RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5575
(668 letters)
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor,
HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET:
UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A*
3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Length = 247
Score = 52.5 bits (125), Expect = 1e-07
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 8/89 (8%)
Query: 2 DKSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLI 61
+ + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+
Sbjct: 38 ETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLM 94
Query: 62 SEVDAIIMRANRMVNNGRMGDFVINGRTK 90
S +D +I N ++G + INGRTK
Sbjct: 95 SSMDDLIRHCNG-----KLGSYKINGRTK 118
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 7e-07
Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 65/220 (29%)
Query: 48 DGRETY---CSNIGRLISEVDAIIMRANR-----------MVNNGRMGDFVINGRTKDLR 93
+G + SN+ + +V + + N +VN + V++G + L
Sbjct: 332 EGVPSPMLSISNLTQ--EQVQDYVNKTNSHLPAGKQVEISLVNGAKN--LVVSGPPQSLY 387
Query: 94 --ISTVEDLRISTVED----------LRISTVEDLRIST--------------VEDLRIS 127
T+ + + D L+ S L +++ +DL +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSN-RFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 128 TVE----DLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVE-----DLRISTVE 178
V D++I V D DLR+ + + V+ + V+ + + +
Sbjct: 447 NVSFNAKDIQI-PVYD--TFDGSDLRVLS-GSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 179 DL---RISTVEDLRISTVED---LRISTVEDLRISTVEDL 212
D S + L +D +R+ L I+ +D
Sbjct: 503 DFGPGGASGLGVL-THRNKDGTGVRVIVAGTLDINPDDDY 541
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 3e-04
Identities = 63/447 (14%), Positives = 142/447 (31%), Gaps = 101/447 (22%)
Query: 90 KDLRISTVEDLRISTVEDLRISTVED-LR--ISTVEDLRISTVEDLRISTVEDLRISTVE 146
KD+ + + V++ V+D + +S E ++ + +S
Sbjct: 19 KDI----LSVFEDAFVDNFDCKDVQDMPKSILSKEE------IDHIIMSKDAVSGT---- 64
Query: 147 DLRISTVEDLRISTVEDLRISTVEDL----------RISTVEDLRISTVEDLRISTVEDL 196
T+ + V+ VE++ I T E + S + + I + L
Sbjct: 65 LRLFWTLLSKQEEMVQKF----VEEVLRINYKFLMSPIKT-EQRQPSMMTRMYIEQRDRL 119
Query: 197 RISTVEDLRISTVEDLRISTVEDLRISTVEDLRIS-------------TVEDLRISTVED 243
+ + V R+ LR + +LR + T + +
Sbjct: 120 Y-NDNQVFAKYNVS--RLQPYLKLR-QALLELRPAKNVLIDGVLGSGKTW--VALDVCLS 173
Query: 244 LRISTVEDLRISTVEDLRISTVEDLRISTVEDL--RISTVEDLRISTVEDLRISTVEDLR 301
++ D +I + +L+ + + ++ L +I R ++++ ++
Sbjct: 174 YKVQCKMDFKIFWL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQ 231
Query: 302 ISTVEDLRISTVEDLRIS-----TVEDLRISTVEDLR----ISTVEDLRISTVEDLRIST 352
E R+ + V++ + +L ++T R V D +S
Sbjct: 232 A---ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT----RFKQVTD-FLSA 283
Query: 353 VEDLRISTVEDLRISTVED---------LRISTVEDLR--ISTVEDLRISTV-EDLRIST 400
IS ++ ++ D L +DL + T R+S + E +R
Sbjct: 284 ATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPRRLSIIAESIR--- 338
Query: 401 VEDL-RISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVED 459
+ L + + + + S++ L + R + L + I T
Sbjct: 339 -DGLATWDNWKHVNCDKLTTIIESSLNVL---EPAEYR-KMFDRLSV-FPPSAHIPT-IL 391
Query: 460 LRI----STVEDLRISTVEDLRISTVE 482
L + D+ + + + S VE
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Score = 34.4 bits (78), Expect = 0.15
Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 47/181 (25%)
Query: 505 VEDLRISTVEDLRISTVED-LR--ISTVEDLRISTVEDLRISTVEDLR----ISTVEDLR 557
+ + V++ V+D + +S E ++ + +S T+ +
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEE------IDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 558 ISTVEDLRISTVEDL----------RISTVEDLRISTVEDLRISTVEDLRISTVEDLRIS 607
V+ VE++ I T E + S + + I + L + +
Sbjct: 76 EEMVQKF----VEEVLRINYKFLMSPIKT-EQRQPSMMTRMYIEQRDRLY-NDNQVFAKY 129
Query: 608 TVEDLRISTVEDLRISTVEDLRIS-------------TVEDLRISTVEDLRILLLYDFSY 654
V R+ LR + +LR + T + + ++ DF
Sbjct: 130 NVS--RLQPYLKLR-QALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKI 184
Query: 655 F 655
F
Sbjct: 185 F 185
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 29.4 bits (66), Expect = 4.3
Identities = 20/191 (10%), Positives = 64/191 (33%), Gaps = 10/191 (5%)
Query: 468 LRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTV-EDLRISTVEDLRIS------T 520
+ + +L + L ++ + + + R +E L +S
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219
Query: 521 VEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDL 580
+ + + + ++ ++D +T L S+V L +S
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS---HG 276
Query: 581 RISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRIST 640
+ ++ T++DL++ + +I+ + D +++L++ + + +
Sbjct: 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336
Query: 641 VEDLRILLLYD 651
+ + + L
Sbjct: 337 LPKVAYIDLQK 347
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.336
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,227,628
Number of extensions: 726548
Number of successful extensions: 1492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1427
Number of HSP's successfully gapped: 6
Length of query: 668
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 568
Effective length of database: 3,909,693
Effective search space: 2220705624
Effective search space used: 2220705624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.4 bits)