RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5575
         (668 letters)



>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus
           thermophilus [TaxId: 274]}
          Length = 250

 Score = 28.4 bits (63), Expect = 2.5
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 48  DGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDLRISTV 97
            G+    S  G  I++ +    RA RMV  G++    ++G    +R  T+
Sbjct: 173 SGQLAPRSMPGSWITDPEEAARRALRMVLEGKV--EALDGGEVAVRADTL 220


>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 254

 Score = 27.6 bits (61), Expect = 4.8
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 48  DGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDLRISTV 97
           DG        G +I + + I  R   MV +G +    ING   DL++ T+
Sbjct: 173 DGTLVPRGRPGAVIEDKEEIAERVISMVKDGGI--RAINGEWVDLKVDTI 220


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.336 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,408,375
Number of extensions: 125535
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 53
Length of query: 668
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 577
Effective length of database: 1,158,166
Effective search space: 668261782
Effective search space used: 668261782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.7 bits)