BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5576
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60
++++EK + EL+ +K +L G S+LH ++ L++++ LK++L + EL + L
Sbjct: 1048 LKKEEKSRQELEKIKRKLEGESSDLH---EQIAELQAQIAELKAQLAKKEEELQAALARL 1104
Query: 61 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 118
S+ + ++ L+S + L+ +L K+ + + + L EL LK+EL
Sbjct: 1105 EDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 36 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95
+ EL +K +L G S+LH ++ L++++ LK++L + EL + L S+
Sbjct: 1055 RQELEKIKRKLEGESSDLH---EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK 1111
Query: 96 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144
+ ++ L+S + L+ +L K+ + + + L EL LK+EL
Sbjct: 1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160
>pdb|1G6U|A Chain A, Crystal Structure Of A Domain Swapped Dimer
pdb|1G6U|B Chain B, Crystal Structure Of A Domain Swapped Dimer
Length = 48
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 18 LHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLK 64
L LKSEL LK E G E L L+SEL L+ +L LKS+L LK
Sbjct: 2 LAALKSELQALKKE--GFSPEELAALESELQALEKKLAALKSKLQALK 47
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 25 LHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLK 71
L LKSEL LK E G E L L+SEL L+ +L LKS+L LK
Sbjct: 2 LAALKSELQALKKE--GFSPEELAALESELQALEKKLAALKSKLQALK 47
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 32 LHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLK 78
L LKSEL LK E G E L L+SEL L+ +L LKS+L LK
Sbjct: 2 LAALKSELQALKKE--GFSPEELAALESELQALEKKLAALKSKLQALK 47
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 39 LHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLK 85
L LKSEL LK E G E L L+SEL L+ +L LKS+L LK
Sbjct: 2 LAALKSELQALKKE--GFSPEELAALESELQALEKKLAALKSKLQALK 47
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 46 LHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLK 92
L LKSEL LK E G E L L+SEL L+ +L LKS+L LK
Sbjct: 2 LAALKSELQALKKE--GFSPEELAALESELQALEKKLAALKSKLQALK 47
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 53 LHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLK 99
L LKSEL LK E G E L L+SEL L+ +L LKS+L LK
Sbjct: 2 LAALKSELQALKKE--GFSPEELAALESELQALEKKLAALKSKLQALK 47
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 60 LHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLK 106
L LKSEL LK E G E L L+SEL L+ +L LKS+L LK
Sbjct: 2 LAALKSELQALKKE--GFSPEELAALESELQALEKKLAALKSKLQALK 47
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 67 LHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLK 113
L LKSEL LK E G E L L+SEL L+ +L LKS+L LK
Sbjct: 2 LAALKSELQALKKE--GFSPEELAALESELQALEKKLAALKSKLQALK 47
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 74 LHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLK 120
L LKSEL LK E G E L L+SEL L+ +L LKS+L LK
Sbjct: 2 LAALKSELQALKKE--GFSPEELAALESELQALEKKLAALKSKLQALK 47
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 81 LHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLK 127
L LKSEL LK E G E L L+SEL L+ +L LKS+L LK
Sbjct: 2 LAALKSELQALKKE--GFSPEELAALESELQALEKKLAALKSKLQALK 47
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 88 LHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLK 134
L LKSEL LK E G E L L+SEL L+ +L LKS+L LK
Sbjct: 2 LAALKSELQALKKE--GFSPEELAALESELQALEKKLAALKSKLQALK 47
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 95 LHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLK 141
L LKSEL LK E G E L L+SEL L+ +L LKS+L LK
Sbjct: 2 LAALKSELQALKKE--GFSPEELAALESELQALEKKLAALKSKLQALK 47
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 11 LDGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLK 57
L LKSEL LK E G E L L+SEL L+ +L LKS+L LK
Sbjct: 2 LAALKSELQALKKE--GFSPEELAALESELQALEKKLAALKSKLQALK 47
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 102 LHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSEL 144
L LKSEL LK E G E L L+SEL L+ +L LKS+L
Sbjct: 2 LAALKSELQALKKE--GFSPEELAALESELQALEKKLAALKSKL 43
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 8 KSELDGLKSE------LHGLKSELHGLKSELHGLKSELHGLK 43
KSEL LK E L L+SEL L+ +L LKS+L LK
Sbjct: 6 KSELQALKKEGFSPEELAALESELQALEKKLAALKSKLQALK 47
>pdb|2QA7|A Chain A, Crystal Structure Of Huntingtin-Interacting Protein 1
(Hip1) Coiled-Coil Domain With A Basic Surface Suitable
For Hip-Protein Interactor (Hippi)
pdb|2QA7|B Chain B, Crystal Structure Of Huntingtin-Interacting Protein 1
(Hip1) Coiled-Coil Domain With A Basic Surface Suitable
For Hip-Protein Interactor (Hippi)
pdb|2QA7|C Chain C, Crystal Structure Of Huntingtin-Interacting Protein 1
(Hip1) Coiled-Coil Domain With A Basic Surface Suitable
For Hip-Protein Interactor (Hippi)
pdb|2QA7|D Chain D, Crystal Structure Of Huntingtin-Interacting Protein 1
(Hip1) Coiled-Coil Domain With A Basic Surface Suitable
For Hip-Protein Interactor (Hippi)
Length = 114
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 95 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNC 148
+ L E+ GLK++L +K+E + +L G SEL +E L+ + +C
Sbjct: 10 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDC 63
>pdb|3I00|A Chain A, Crystal Structure Of The Huntingtin Interacting Protein 1
Coiled Coil Domain
pdb|3I00|B Chain B, Crystal Structure Of The Huntingtin Interacting Protein 1
Coiled Coil Domain
Length = 120
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 95 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNC 148
+ L E+ GLK++L +K+E + +L G SEL +E L+ + +C
Sbjct: 17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDC 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,942,266
Number of Sequences: 62578
Number of extensions: 133417
Number of successful extensions: 409
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 45
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)