Query psy5576
Match_columns 156
No_of_seqs 118 out of 796
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 21:01:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12718 Tropomyosin_1: Tropom 98.4 0.00014 3E-09 48.6 17.8 134 7-147 5-141 (143)
2 COG1579 Zn-ribbon protein, pos 98.4 0.00012 2.7E-09 52.5 17.4 113 11-123 19-133 (239)
3 PF00261 Tropomyosin: Tropomyo 98.4 0.00034 7.3E-09 50.7 18.9 57 82-138 172-228 (237)
4 COG1579 Zn-ribbon protein, pos 98.3 0.00028 6E-09 50.8 17.0 48 60-107 91-138 (239)
5 TIGR02168 SMC_prok_B chromosom 98.3 0.00024 5.3E-09 61.7 19.5 46 8-53 676-721 (1179)
6 PRK09039 hypothetical protein; 98.2 0.00045 9.8E-09 52.7 17.2 61 73-133 124-184 (343)
7 PF12718 Tropomyosin_1: Tropom 98.2 0.00056 1.2E-08 45.7 17.5 132 5-140 10-141 (143)
8 PF00261 Tropomyosin: Tropomyo 98.2 0.00099 2.1E-08 48.3 19.2 57 25-81 94-150 (237)
9 KOG0250|consensus 98.1 0.00074 1.6E-08 57.3 18.1 58 10-67 303-360 (1074)
10 PRK09039 hypothetical protein; 98.0 0.0013 2.9E-08 50.1 17.0 59 80-138 124-182 (343)
11 KOG0933|consensus 98.0 0.0012 2.5E-08 55.7 16.9 146 3-148 788-940 (1174)
12 PF08317 Spc7: Spc7 kinetochor 97.9 0.0037 8.1E-08 47.4 17.8 18 136-153 277-294 (325)
13 PF08317 Spc7: Spc7 kinetochor 97.9 0.004 8.7E-08 47.2 17.9 81 67-147 211-295 (325)
14 PRK11637 AmiB activator; Provi 97.9 0.0071 1.5E-07 47.6 20.2 61 8-68 53-113 (428)
15 PF00038 Filament: Intermediat 97.8 0.0093 2E-07 44.8 18.0 38 8-45 3-40 (312)
16 PRK03918 chromosome segregatio 97.7 0.0085 1.8E-07 51.1 18.4 6 105-110 685-690 (880)
17 PRK11637 AmiB activator; Provi 97.7 0.017 3.6E-07 45.5 19.5 69 9-77 47-115 (428)
18 PF10174 Cast: RIM-binding pro 97.6 0.019 4.1E-07 48.2 18.7 23 11-33 289-311 (775)
19 smart00787 Spc7 Spc7 kinetocho 97.6 0.014 3.1E-07 44.0 17.7 18 129-146 272-289 (312)
20 PRK04778 septation ring format 97.6 0.015 3.2E-07 47.5 17.8 106 42-147 315-430 (569)
21 PF14662 CCDC155: Coiled-coil 97.6 0.01 2.2E-07 41.2 18.9 99 43-141 66-164 (193)
22 smart00787 Spc7 Spc7 kinetocho 97.6 0.017 3.7E-07 43.5 18.5 21 135-155 271-291 (312)
23 KOG0161|consensus 97.6 0.023 5E-07 51.8 19.0 33 11-43 994-1026(1930)
24 TIGR00606 rad50 rad50. This fa 97.5 0.024 5.2E-07 50.6 18.9 47 3-49 882-928 (1311)
25 KOG0933|consensus 97.5 0.036 7.9E-07 47.2 18.3 132 4-135 743-885 (1174)
26 KOG0161|consensus 97.5 0.029 6.4E-07 51.2 18.9 122 5-126 904-1025(1930)
27 KOG0996|consensus 97.5 0.023 5E-07 49.1 16.9 9 11-19 867-875 (1293)
28 KOG0996|consensus 97.4 0.05 1.1E-06 47.1 17.8 49 102-150 558-606 (1293)
29 PRK04778 septation ring format 97.3 0.059 1.3E-06 44.1 17.6 7 39-45 319-325 (569)
30 PF09730 BicD: Microtubule-ass 97.3 0.053 1.1E-06 45.2 17.2 83 16-98 34-116 (717)
31 PF14662 CCDC155: Coiled-coil 97.3 0.026 5.6E-07 39.2 18.3 7 11-17 45-51 (193)
32 PF10481 CENP-F_N: Cenp-F N-te 97.3 0.04 8.8E-07 40.2 14.2 111 10-120 19-129 (307)
33 KOG0977|consensus 97.2 0.056 1.2E-06 43.5 16.0 41 4-44 37-77 (546)
34 PRK04863 mukB cell division pr 97.2 0.071 1.5E-06 48.1 18.1 46 105-150 440-485 (1486)
35 KOG0977|consensus 97.1 0.094 2E-06 42.3 17.6 99 7-105 90-188 (546)
36 PF10498 IFT57: Intra-flagella 97.1 0.07 1.5E-06 41.1 15.3 133 14-149 218-356 (359)
37 PRK04863 mukB cell division pr 97.1 0.15 3.3E-06 46.1 19.3 61 73-133 356-416 (1486)
38 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.1 0.033 7.3E-07 36.6 17.2 84 9-92 3-86 (132)
39 PF08614 ATG16: Autophagy prot 97.1 0.0077 1.7E-07 42.3 9.3 104 29-132 73-176 (194)
40 KOG4643|consensus 97.1 0.15 3.2E-06 43.8 18.4 142 7-148 413-557 (1195)
41 KOG0978|consensus 97.1 0.097 2.1E-06 43.4 16.1 129 3-131 490-618 (698)
42 PF09726 Macoilin: Transmembra 97.1 0.14 3.1E-06 42.8 17.3 13 8-20 424-436 (697)
43 KOG4674|consensus 97.0 0.2 4.4E-06 45.7 18.8 131 15-145 135-269 (1822)
44 PF00038 Filament: Intermediat 97.0 0.084 1.8E-06 39.7 17.6 119 10-128 19-138 (312)
45 KOG0964|consensus 97.0 0.18 3.8E-06 43.2 18.1 102 4-105 666-767 (1200)
46 COG1340 Uncharacterized archae 97.0 0.09 1.9E-06 39.1 17.6 72 4-75 29-100 (294)
47 PF08614 ATG16: Autophagy prot 97.0 0.033 7.2E-07 39.1 11.3 65 57-121 94-158 (194)
48 PF04849 HAP1_N: HAP1 N-termin 96.9 0.11 2.4E-06 38.9 17.3 85 59-143 214-298 (306)
49 KOG0964|consensus 96.8 0.16 3.4E-06 43.5 15.7 88 9-96 230-317 (1200)
50 PF12128 DUF3584: Protein of u 96.8 0.34 7.3E-06 43.2 19.4 73 5-77 603-675 (1201)
51 KOG0995|consensus 96.7 0.22 4.9E-06 40.1 17.2 49 44-92 273-321 (581)
52 PF05911 DUF869: Plant protein 96.7 0.31 6.7E-06 41.2 17.5 18 129-146 734-751 (769)
53 PF15619 Lebercilin: Ciliary p 96.7 0.12 2.6E-06 36.3 17.5 39 57-95 67-105 (194)
54 PF04849 HAP1_N: HAP1 N-termin 96.7 0.17 3.8E-06 37.9 14.9 41 46-86 208-248 (306)
55 PF06818 Fez1: Fez1; InterPro 96.6 0.14 3E-06 36.0 15.6 96 9-104 10-105 (202)
56 COG3883 Uncharacterized protei 96.6 0.17 3.8E-06 37.1 19.7 14 11-24 54-67 (265)
57 PF04582 Reo_sigmaC: Reovirus 96.6 0.0051 1.1E-07 46.2 5.1 126 18-143 30-155 (326)
58 KOG0963|consensus 96.6 0.32 6.9E-06 39.7 17.6 47 105-152 315-361 (629)
59 PF04582 Reo_sigmaC: Reovirus 96.5 0.0059 1.3E-07 45.8 5.2 122 14-135 33-154 (326)
60 PF05667 DUF812: Protein of un 96.5 0.35 7.7E-06 39.8 18.5 53 7-59 326-378 (594)
61 COG4372 Uncharacterized protei 96.5 0.27 5.8E-06 37.9 18.0 43 11-53 76-118 (499)
62 PF15070 GOLGA2L5: Putative go 96.5 0.39 8.4E-06 39.7 17.4 24 6-29 84-107 (617)
63 PF09730 BicD: Microtubule-ass 96.5 0.44 9.5E-06 40.0 18.6 78 3-80 28-105 (717)
64 PF10481 CENP-F_N: Cenp-F N-te 96.4 0.24 5.2E-06 36.4 13.4 33 106-138 94-126 (307)
65 COG4942 Membrane-bound metallo 96.4 0.34 7.3E-06 37.9 19.2 71 4-74 40-110 (420)
66 COG1340 Uncharacterized archae 96.3 0.29 6.3E-06 36.4 17.7 46 4-49 43-88 (294)
67 PF09726 Macoilin: Transmembra 96.3 0.55 1.2E-05 39.4 18.7 27 7-33 458-484 (697)
68 PF05911 DUF869: Plant protein 96.2 0.67 1.4E-05 39.3 17.5 23 125-147 737-759 (769)
69 PF13851 GAS: Growth-arrest sp 96.2 0.27 5.9E-06 34.8 16.6 44 11-54 29-72 (201)
70 KOG0971|consensus 96.2 0.73 1.6E-05 39.5 18.6 32 3-34 326-357 (1243)
71 PF10146 zf-C4H2: Zinc finger- 96.1 0.32 6.9E-06 35.1 13.7 72 51-122 32-103 (230)
72 PF13851 GAS: Growth-arrest sp 96.1 0.3 6.4E-06 34.6 18.2 42 6-47 31-72 (201)
73 PF01576 Myosin_tail_1: Myosin 96.1 0.0015 3.2E-08 55.6 0.0 101 4-104 154-254 (859)
74 PF15619 Lebercilin: Ciliary p 96.1 0.3 6.5E-06 34.4 17.9 17 128-144 164-180 (194)
75 PF05667 DUF812: Protein of un 96.0 0.71 1.5E-05 38.1 18.6 49 5-53 331-379 (594)
76 PF12128 DUF3584: Protein of u 96.0 1.1 2.4E-05 40.1 18.3 69 12-80 603-671 (1201)
77 KOG0976|consensus 96.0 0.86 1.9E-05 38.6 17.0 68 8-75 91-158 (1265)
78 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.9 0.26 5.7E-06 32.4 17.0 43 5-47 6-48 (132)
79 PF15290 Syntaphilin: Golgi-lo 95.8 0.48 1E-05 34.9 11.7 74 11-84 70-143 (305)
80 PF09789 DUF2353: Uncharacteri 95.8 0.59 1.3E-05 35.4 15.2 33 109-141 135-167 (319)
81 PF09789 DUF2353: Uncharacteri 95.8 0.6 1.3E-05 35.4 15.3 22 4-25 25-46 (319)
82 KOG0995|consensus 95.8 0.84 1.8E-05 37.0 18.2 24 49-72 264-287 (581)
83 COG5185 HEC1 Protein involved 95.7 0.78 1.7E-05 36.4 17.0 62 34-95 299-360 (622)
84 KOG0971|consensus 95.7 1.2 2.6E-05 38.2 17.9 38 97-134 494-531 (1243)
85 KOG0999|consensus 95.6 0.95 2.1E-05 36.7 15.3 81 18-98 109-189 (772)
86 PF12795 MscS_porin: Mechanose 95.5 0.62 1.3E-05 33.8 17.9 91 6-96 35-137 (240)
87 PF01576 Myosin_tail_1: Myosin 95.5 0.0036 7.9E-08 53.3 0.0 66 5-70 352-417 (859)
88 TIGR03007 pepcterm_ChnLen poly 95.5 1 2.3E-05 36.1 16.6 9 11-19 170-178 (498)
89 PF06160 EzrA: Septation ring 95.4 1.2 2.6E-05 36.5 17.4 74 71-144 350-423 (560)
90 KOG4673|consensus 95.3 1.4 3E-05 36.7 16.8 18 2-19 423-440 (961)
91 KOG0018|consensus 95.2 1 2.3E-05 39.1 13.2 58 71-128 295-352 (1141)
92 COG4372 Uncharacterized protei 95.2 1.1 2.4E-05 34.7 19.4 21 10-30 82-102 (499)
93 KOG0978|consensus 95.2 1.6 3.5E-05 36.5 18.9 59 88-146 554-612 (698)
94 KOG0804|consensus 95.2 1.2 2.6E-05 35.1 15.3 99 31-132 348-446 (493)
95 PF06818 Fez1: Fez1; InterPro 95.2 0.72 1.6E-05 32.5 14.5 91 7-97 15-105 (202)
96 PRK10884 SH3 domain-containing 95.1 0.77 1.7E-05 32.6 10.8 23 102-124 141-163 (206)
97 KOG1003|consensus 95.0 0.79 1.7E-05 32.1 17.6 40 5-44 7-46 (205)
98 PF12325 TMF_TATA_bd: TATA ele 95.0 0.57 1.2E-05 30.3 13.0 32 88-119 77-108 (120)
99 TIGR03007 pepcterm_ChnLen poly 94.8 1.7 3.6E-05 35.0 17.0 28 9-36 161-188 (498)
100 PF13870 DUF4201: Domain of un 94.8 0.87 1.9E-05 31.4 15.3 20 11-30 15-34 (177)
101 PF13870 DUF4201: Domain of un 94.7 0.93 2E-05 31.3 16.3 30 8-37 5-34 (177)
102 PF09738 DUF2051: Double stran 94.7 1.4 3E-05 33.2 12.3 89 10-98 78-166 (302)
103 KOG0979|consensus 94.6 2.8 6E-05 36.5 17.5 36 11-46 183-218 (1072)
104 PRK15422 septal ring assembly 94.5 0.53 1.1E-05 27.9 9.2 56 81-136 20-75 (79)
105 PF05384 DegS: Sensor protein 94.5 0.97 2.1E-05 30.8 17.3 23 118-140 130-152 (159)
106 COG2433 Uncharacterized conser 94.5 1.6 3.4E-05 35.8 12.0 31 119-149 479-509 (652)
107 KOG0999|consensus 94.5 2.2 4.7E-05 34.7 16.6 32 4-35 45-76 (772)
108 KOG0946|consensus 94.5 1.7 3.7E-05 36.9 12.3 34 58-91 848-881 (970)
109 COG4026 Uncharacterized protei 94.4 1.1 2.3E-05 32.1 9.7 73 55-127 132-204 (290)
110 PF00769 ERM: Ezrin/radixin/mo 94.4 1.4 3.1E-05 32.2 15.6 35 101-135 83-117 (246)
111 KOG0239|consensus 94.3 2.8 6.1E-05 35.2 14.8 98 56-153 225-325 (670)
112 PF12777 MT: Microtubule-bindi 94.2 0.62 1.4E-05 35.7 9.1 74 67-140 237-310 (344)
113 TIGR01005 eps_transp_fam exopo 94.1 3.2 7E-05 35.2 16.1 19 8-26 200-218 (754)
114 PF09728 Taxilin: Myosin-like 94.0 2 4.4E-05 32.5 19.1 54 55-108 213-266 (309)
115 COG3074 Uncharacterized protei 93.9 0.68 1.5E-05 26.6 8.9 58 79-136 18-75 (79)
116 KOG4360|consensus 93.9 2.8 6.1E-05 33.7 13.4 62 49-110 203-264 (596)
117 PF02994 Transposase_22: L1 tr 93.8 0.27 5.8E-06 38.1 6.5 41 101-141 145-185 (370)
118 PF07798 DUF1640: Protein of u 93.7 1.6 3.4E-05 30.2 17.6 47 104-155 117-163 (177)
119 PF10186 Atg14: UV radiation r 93.7 2.1 4.6E-05 31.7 17.5 21 11-31 22-42 (302)
120 PRK11281 hypothetical protein; 93.7 4.9 0.00011 35.8 16.9 24 10-33 81-104 (1113)
121 PF09738 DUF2051: Double stran 93.6 2.4 5.1E-05 32.0 12.4 86 49-134 82-167 (302)
122 PF05384 DegS: Sensor protein 93.5 1.6 3.4E-05 29.7 17.4 47 34-80 24-70 (159)
123 PF10498 IFT57: Intra-flagella 93.5 2.8 6E-05 32.5 15.7 24 31-54 221-244 (359)
124 PF10186 Atg14: UV radiation r 93.5 2.3 5E-05 31.5 17.2 23 18-40 22-44 (302)
125 PF05010 TACC: Transforming ac 93.3 2.1 4.5E-05 30.5 18.7 16 112-127 166-181 (207)
126 KOG0994|consensus 93.2 6 0.00013 35.3 16.7 32 103-134 1713-1744(1758)
127 PRK11281 hypothetical protein; 93.1 6.1 0.00013 35.3 15.9 9 8-16 86-94 (1113)
128 KOG0962|consensus 92.9 6.7 0.00015 35.3 17.1 24 59-82 269-292 (1294)
129 PF11932 DUF3450: Protein of u 92.9 2.7 5.9E-05 30.7 14.3 48 48-95 53-100 (251)
130 KOG0243|consensus 92.8 6.3 0.00014 34.6 18.7 33 62-94 480-512 (1041)
131 TIGR01000 bacteriocin_acc bact 92.8 4.2 9.1E-05 32.4 16.6 20 121-140 291-310 (457)
132 PF08647 BRE1: BRE1 E3 ubiquit 92.7 1.5 3.2E-05 27.2 11.6 37 58-94 24-60 (96)
133 PF14915 CCDC144C: CCDC144C pr 92.7 3.2 7E-05 31.1 18.9 29 12-40 147-175 (305)
134 PF11559 ADIP: Afadin- and alp 92.6 2.1 4.6E-05 28.6 15.0 17 127-143 132-148 (151)
135 KOG4809|consensus 92.5 5 0.00011 32.7 14.5 17 114-130 421-437 (654)
136 KOG0946|consensus 92.5 6.2 0.00013 33.7 16.4 30 109-138 808-837 (970)
137 KOG0972|consensus 92.3 3.7 8.1E-05 30.7 13.8 81 66-146 274-360 (384)
138 PF07106 TBPIP: Tat binding pr 92.3 1.3 2.7E-05 30.3 7.4 9 132-140 149-157 (169)
139 PF13514 AAA_27: AAA domain 92.1 8.4 0.00018 34.4 17.4 69 84-152 894-964 (1111)
140 COG5185 HEC1 Protein involved 92.0 5.3 0.00012 32.0 17.0 67 41-107 292-358 (622)
141 PF05335 DUF745: Protein of un 91.7 3.4 7.3E-05 29.0 15.2 53 100-152 123-175 (188)
142 TIGR01000 bacteriocin_acc bact 91.6 5.9 0.00013 31.6 14.5 22 113-134 290-311 (457)
143 KOG4643|consensus 91.6 8.9 0.00019 33.6 18.0 34 101-134 503-536 (1195)
144 KOG0994|consensus 91.6 9.9 0.00021 34.1 17.6 33 22-54 1569-1601(1758)
145 PF10805 DUF2730: Protein of u 91.4 2.3 5E-05 26.8 7.3 48 94-141 43-92 (106)
146 KOG1853|consensus 91.4 4.4 9.5E-05 29.7 16.5 107 14-123 50-163 (333)
147 PF15070 GOLGA2L5: Putative go 91.3 7.8 0.00017 32.3 18.5 32 111-142 199-230 (617)
148 KOG4302|consensus 91.2 4.1 9E-05 34.0 10.3 39 114-152 160-198 (660)
149 PRK03947 prefoldin subunit alp 91.1 3.1 6.8E-05 27.4 12.2 27 108-134 102-128 (140)
150 COG1842 PspA Phage shock prote 91.1 4.5 9.7E-05 29.2 17.0 42 89-130 95-136 (225)
151 KOG0288|consensus 90.3 7.6 0.00016 30.5 14.9 33 8-40 12-44 (459)
152 PF10234 Cluap1: Clusterin-ass 90.2 6 0.00013 29.3 12.0 54 87-140 184-237 (267)
153 PF04728 LPP: Lipoprotein leuc 90.0 2.1 4.5E-05 23.7 7.1 19 12-30 6-24 (56)
154 PF06785 UPF0242: Uncharacteri 90.0 7.1 0.00015 29.8 16.4 48 51-98 127-174 (401)
155 KOG2264|consensus 89.8 2.6 5.5E-05 34.5 7.7 30 60-89 109-138 (907)
156 PF09728 Taxilin: Myosin-like 89.6 7.5 0.00016 29.5 18.7 22 97-118 241-262 (309)
157 PF13166 AAA_13: AAA domain 89.4 12 0.00026 31.5 15.8 27 108-134 425-451 (712)
158 PF05335 DUF745: Protein of un 89.1 6.1 0.00013 27.7 15.4 109 19-127 63-171 (188)
159 PF15397 DUF4618: Domain of un 88.9 7.6 0.00017 28.6 18.6 41 103-143 182-222 (258)
160 KOG4603|consensus 88.6 6.1 0.00013 27.2 8.0 69 72-140 79-149 (201)
161 COG4477 EzrA Negative regulato 88.1 13 0.00028 30.3 16.0 77 70-146 352-428 (570)
162 KOG4809|consensus 87.8 14 0.0003 30.3 15.7 65 18-82 333-397 (654)
163 TIGR01005 eps_transp_fam exopo 87.5 17 0.00037 31.0 17.6 27 11-37 196-222 (754)
164 cd00632 Prefoldin_beta Prefold 87.5 5.1 0.00011 25.0 11.5 32 106-137 69-100 (105)
165 KOG0963|consensus 87.5 15 0.00033 30.4 17.9 30 111-140 314-343 (629)
166 KOG1962|consensus 87.3 5.1 0.00011 28.7 7.2 39 54-92 161-199 (216)
167 COG1382 GimC Prefoldin, chaper 87.2 6 0.00013 25.5 12.6 42 99-140 69-110 (119)
168 PF07851 TMPIT: TMPIT-like pro 87.2 12 0.00025 28.8 10.2 52 8-59 3-54 (330)
169 PRK09343 prefoldin subunit bet 87.0 6.3 0.00014 25.5 12.8 39 102-140 73-111 (121)
170 PF14817 HAUS5: HAUS augmin-li 86.9 17 0.00036 30.5 10.9 48 2-49 79-126 (632)
171 PF15066 CAGE1: Cancer-associa 86.9 14 0.00031 29.5 16.7 36 44-79 397-432 (527)
172 PF05483 SCP-1: Synaptonemal c 86.7 18 0.00039 30.5 18.3 29 98-126 620-648 (786)
173 TIGR02338 gimC_beta prefoldin, 86.7 6 0.00013 25.0 10.9 33 105-137 72-104 (110)
174 PF15290 Syntaphilin: Golgi-lo 86.7 11 0.00024 28.0 13.8 23 82-104 120-142 (305)
175 COG4477 EzrA Negative regulato 85.8 18 0.00038 29.6 15.8 55 84-138 352-406 (570)
176 PF05266 DUF724: Protein of un 85.6 10 0.00022 26.6 13.7 60 85-144 123-182 (190)
177 KOG0998|consensus 85.6 3.5 7.7E-05 35.6 6.7 86 10-95 436-521 (847)
178 PF05529 Bap31: B-cell recepto 85.4 10 0.00022 26.4 8.9 34 111-144 158-191 (192)
179 PF02403 Seryl_tRNA_N: Seryl-t 85.3 7 0.00015 24.4 8.3 20 115-134 75-94 (108)
180 PF08172 CASP_C: CASP C termin 85.1 13 0.00028 27.3 9.8 29 8-36 5-33 (248)
181 PRK02119 hypothetical protein; 85.0 5.7 0.00012 23.2 7.2 25 109-133 25-49 (73)
182 KOG4302|consensus 85.0 15 0.00033 30.8 9.8 39 107-145 160-198 (660)
183 KOG2751|consensus 85.0 17 0.00038 28.7 13.9 92 60-151 178-269 (447)
184 PRK10803 tol-pal system protei 84.8 10 0.00022 28.0 8.1 59 33-91 43-101 (263)
185 PRK10803 tol-pal system protei 84.4 10 0.00022 28.0 8.0 14 112-125 73-86 (263)
186 PF06120 Phage_HK97_TLTM: Tail 84.0 16 0.00035 27.6 15.2 11 9-19 55-65 (301)
187 KOG0288|consensus 84.0 19 0.00041 28.4 14.2 54 14-67 11-64 (459)
188 KOG3385|consensus 83.9 5.7 0.00012 25.4 5.5 53 99-156 56-108 (118)
189 PF10458 Val_tRNA-synt_C: Valy 83.9 6 0.00013 22.5 6.2 25 9-33 4-28 (66)
190 PF13863 DUF4200: Domain of un 83.6 9.3 0.0002 24.5 13.6 18 117-134 84-101 (126)
191 KOG4673|consensus 83.6 26 0.00057 29.7 17.5 65 80-144 496-560 (961)
192 KOG1899|consensus 83.4 26 0.00055 29.4 13.3 76 17-92 126-201 (861)
193 KOG2991|consensus 83.2 16 0.00035 26.9 14.3 7 128-134 285-291 (330)
194 PF15188 CCDC-167: Coiled-coil 83.0 8.1 0.00018 23.4 7.0 15 118-132 47-61 (85)
195 PF15294 Leu_zip: Leucine zipp 82.2 19 0.0004 26.9 13.7 45 7-51 130-174 (278)
196 PRK10929 putative mechanosensi 81.9 39 0.00084 30.5 16.9 50 101-150 266-315 (1109)
197 PF08826 DMPK_coil: DMPK coile 81.3 7.6 0.00017 21.9 8.6 27 97-123 29-55 (61)
198 PF06008 Laminin_I: Laminin Do 81.3 19 0.00041 26.5 15.2 18 53-70 89-106 (264)
199 COG5283 Phage-related tail pro 81.3 41 0.00089 30.3 16.1 75 24-98 65-139 (1213)
200 PF06428 Sec2p: GDP/GTP exchan 81.2 5.1 0.00011 25.1 4.6 7 35-41 20-26 (100)
201 PF10779 XhlA: Haemolysin XhlA 80.7 8.7 0.00019 22.2 6.6 19 130-148 36-54 (71)
202 KOG1853|consensus 80.4 21 0.00045 26.3 15.8 15 53-67 61-75 (333)
203 PF13874 Nup54: Nucleoporin co 80.2 15 0.00032 24.4 8.0 18 119-136 105-122 (141)
204 KOG0998|consensus 80.1 5.8 0.00013 34.4 6.0 59 44-102 463-521 (847)
205 TIGR03752 conj_TIGR03752 integ 79.9 30 0.00065 27.9 10.2 21 108-128 117-137 (472)
206 PRK00295 hypothetical protein; 79.8 9.4 0.0002 22.0 7.2 13 91-103 24-36 (68)
207 PRK10929 putative mechanosensi 79.6 47 0.001 30.0 17.1 42 97-138 269-310 (1109)
208 TIGR03017 EpsF chain length de 79.1 30 0.00064 27.4 18.6 26 11-36 173-198 (444)
209 PF05529 Bap31: B-cell recepto 78.8 19 0.00042 25.0 8.4 34 102-135 156-189 (192)
210 PF10211 Ax_dynein_light: Axon 78.8 20 0.00043 25.1 8.6 67 4-70 122-189 (189)
211 PF06810 Phage_GP20: Phage min 78.5 18 0.00039 24.5 10.2 16 130-145 118-133 (155)
212 KOG1899|consensus 78.3 40 0.00086 28.4 14.0 71 4-74 120-190 (861)
213 COG3096 MukB Uncharacterized p 78.2 45 0.00097 28.9 14.5 53 85-137 1058-1110(1480)
214 PF03962 Mnd1: Mnd1 family; I 77.9 21 0.00046 25.0 12.4 19 107-125 142-160 (188)
215 PF05266 DUF724: Protein of un 77.6 22 0.00047 25.0 13.4 74 62-135 107-180 (190)
216 PF08172 CASP_C: CASP C termin 77.0 27 0.00058 25.7 9.3 35 11-45 1-35 (248)
217 PF00957 Synaptobrevin: Synapt 76.2 14 0.00031 22.1 8.5 43 111-153 28-70 (89)
218 TIGR00634 recN DNA repair prot 75.5 45 0.00097 27.5 14.4 15 118-132 350-364 (563)
219 PF13514 AAA_27: AAA domain 75.3 63 0.0014 29.1 17.4 9 77-85 755-763 (1111)
220 PRK10246 exonuclease subunit S 75.3 62 0.0013 29.0 18.1 18 132-149 864-881 (1047)
221 PF10267 Tmemb_cc2: Predicted 74.6 40 0.00088 26.6 15.1 11 81-91 278-288 (395)
222 TIGR03017 EpsF chain length de 74.5 41 0.00088 26.6 16.1 20 7-26 176-195 (444)
223 KOG2196|consensus 73.2 34 0.00073 25.0 14.3 73 19-91 81-153 (254)
224 PF08826 DMPK_coil: DMPK coile 73.0 15 0.00031 20.8 8.6 33 98-130 23-55 (61)
225 PF07111 HCR: Alpha helical co 72.5 60 0.0013 27.6 14.2 34 89-122 245-278 (739)
226 PRK11519 tyrosine kinase; Prov 72.4 61 0.0013 27.7 14.5 12 17-28 275-286 (719)
227 TIGR03545 conserved hypothetic 71.5 58 0.0012 27.0 10.4 8 148-155 279-286 (555)
228 PF14282 FlxA: FlxA-like prote 71.2 23 0.0005 22.3 7.3 17 10-26 20-36 (106)
229 KOG0982|consensus 70.1 54 0.0012 26.2 15.8 9 120-128 409-417 (502)
230 PF14073 Cep57_CLD: Centrosome 69.9 34 0.00074 23.8 16.1 39 53-91 59-97 (178)
231 COG3096 MukB Uncharacterized p 69.6 75 0.0016 27.6 15.9 42 111-152 446-487 (1480)
232 PF06009 Laminin_II: Laminin D 69.2 1.5 3.4E-05 29.0 0.0 16 119-134 88-103 (138)
233 PF00015 MCPsignal: Methyl-acc 68.9 36 0.00077 23.6 15.2 10 10-19 83-92 (213)
234 PF15397 DUF4618: Domain of un 68.6 45 0.00099 24.7 18.0 24 31-54 82-105 (258)
235 COG1382 GimC Prefoldin, chaper 67.8 30 0.00066 22.4 11.7 21 107-127 84-104 (119)
236 PF05278 PEARLI-4: Arabidopsis 67.4 49 0.0011 24.6 14.0 63 70-132 198-260 (269)
237 PF02050 FliJ: Flagellar FliJ 65.9 29 0.00063 21.4 13.0 14 24-37 13-26 (123)
238 PF06156 DUF972: Protein of un 65.7 32 0.00068 21.8 7.2 30 8-37 7-36 (107)
239 KOG4687|consensus 64.4 58 0.0013 24.4 12.8 35 9-43 9-43 (389)
240 PRK14127 cell division protein 64.2 17 0.00036 23.1 3.9 8 143-150 87-94 (109)
241 PF14257 DUF4349: Domain of un 64.0 43 0.00093 24.5 6.7 25 55-79 129-153 (262)
242 KOG1850|consensus 63.5 66 0.0014 24.7 17.1 120 26-145 211-330 (391)
243 PF00015 MCPsignal: Methyl-acc 63.1 47 0.001 22.9 15.5 27 114-140 170-196 (213)
244 KOG1937|consensus 63.0 79 0.0017 25.5 16.7 27 115-141 390-416 (521)
245 PF04100 Vps53_N: Vps53-like, 63.0 73 0.0016 25.0 11.7 36 88-123 73-108 (383)
246 KOG2751|consensus 62.5 79 0.0017 25.3 13.8 70 54-123 186-255 (447)
247 TIGR02894 DNA_bind_RsfA transc 62.1 48 0.001 22.6 8.4 34 112-145 109-142 (161)
248 PF03962 Mnd1: Mnd1 family; I 61.7 53 0.0011 23.0 13.0 10 117-126 145-154 (188)
249 PHA03011 hypothetical protein; 61.3 37 0.00081 21.2 7.2 9 111-119 103-111 (120)
250 KOG4687|consensus 61.3 67 0.0015 24.1 13.1 42 89-130 86-127 (389)
251 PF11180 DUF2968: Protein of u 61.1 55 0.0012 23.0 13.5 28 107-134 154-181 (192)
252 PRK12704 phosphodiesterase; Pr 61.1 92 0.002 25.6 16.0 121 21-143 29-153 (520)
253 KOG2685|consensus 60.9 83 0.0018 25.0 13.2 36 87-122 352-387 (421)
254 PF04201 TPD52: Tumour protein 60.6 36 0.00077 23.3 5.2 23 75-97 32-54 (162)
255 KOG1760|consensus 60.6 44 0.00096 21.7 9.9 31 125-155 92-122 (131)
256 PRK11020 hypothetical protein; 60.2 43 0.00092 21.4 6.2 21 7-27 3-23 (118)
257 KOG2010|consensus 60.1 77 0.0017 24.4 10.5 51 45-95 127-177 (405)
258 PF10392 COG5: Golgi transport 59.9 46 0.00099 21.7 11.3 60 96-155 68-127 (132)
259 PRK09973 putative outer membra 59.3 38 0.00082 20.5 6.3 24 12-35 27-50 (85)
260 PF05837 CENP-H: Centromere pr 59.2 42 0.00091 21.1 8.9 25 127-151 57-81 (106)
261 KOG3647|consensus 59.0 74 0.0016 23.8 12.3 51 36-86 111-161 (338)
262 PF15254 CCDC14: Coiled-coil d 58.9 1.2E+02 0.0026 26.3 14.7 58 81-138 496-553 (861)
263 PF15035 Rootletin: Ciliary ro 58.8 59 0.0013 22.7 13.5 22 25-46 18-39 (182)
264 PF14389 Lzipper-MIP1: Leucine 58.1 40 0.00086 20.4 6.4 15 5-19 11-25 (88)
265 PF03148 Tektin: Tektin family 58.0 90 0.002 24.5 17.7 39 100-138 324-362 (384)
266 KOG4010|consensus 57.7 42 0.00091 23.5 5.2 13 80-92 52-64 (208)
267 PF04859 DUF641: Plant protein 57.0 54 0.0012 21.6 5.9 36 99-134 86-121 (131)
268 PF04912 Dynamitin: Dynamitin 56.8 94 0.002 24.3 15.8 11 133-143 373-383 (388)
269 PF03148 Tektin: Tektin family 56.6 96 0.0021 24.3 17.5 26 114-139 324-349 (384)
270 COG3352 FlaC Putative archaeal 56.5 60 0.0013 22.0 10.5 27 82-108 75-101 (157)
271 PF08232 Striatin: Striatin fa 56.2 56 0.0012 21.5 8.9 48 63-110 9-56 (134)
272 KOG1318|consensus 56.2 66 0.0014 25.6 6.7 17 2-18 243-259 (411)
273 PRK00888 ftsB cell division pr 56.0 49 0.0011 20.8 5.1 28 100-127 34-61 (105)
274 PF06717 DUF1202: Protein of u 55.5 43 0.00092 25.1 5.3 38 86-123 138-175 (308)
275 PF08232 Striatin: Striatin fa 55.3 58 0.0013 21.4 8.2 54 59-112 12-65 (134)
276 KOG2991|consensus 54.3 88 0.0019 23.3 15.4 16 62-77 181-196 (330)
277 PF04899 MbeD_MobD: MbeD/MobD 53.4 43 0.00094 19.4 8.0 36 25-60 23-58 (70)
278 PF08657 DASH_Spc34: DASH comp 53.2 76 0.0017 23.5 6.4 16 51-66 187-202 (259)
279 PF08657 DASH_Spc34: DASH comp 53.0 90 0.002 23.1 6.7 30 51-80 180-209 (259)
280 TIGR03319 YmdA_YtgF conserved 52.9 1.3E+02 0.0028 24.7 15.6 121 2-122 62-185 (514)
281 PF06120 Phage_HK97_TLTM: Tail 52.8 1E+02 0.0022 23.5 15.9 25 43-67 80-104 (301)
282 PF14389 Lzipper-MIP1: Leucine 51.2 54 0.0012 19.9 6.4 34 4-37 3-36 (88)
283 KOG0811|consensus 50.7 1E+02 0.0022 23.0 15.4 74 79-155 180-253 (269)
284 PHA02414 hypothetical protein 50.6 59 0.0013 20.2 8.2 48 83-130 33-80 (111)
285 PF05615 THOC7: Tho complex su 50.5 69 0.0015 21.0 11.1 30 81-110 76-105 (139)
286 TIGR00414 serS seryl-tRNA synt 50.0 1.3E+02 0.0028 23.9 10.7 103 31-133 3-109 (418)
287 PF09006 Surfac_D-trimer: Lung 49.9 39 0.00084 17.9 3.6 18 126-143 4-21 (46)
288 KOG3091|consensus 49.6 1.4E+02 0.0031 24.3 9.8 18 100-117 411-428 (508)
289 KOG3809|consensus 49.6 1.4E+02 0.003 24.1 11.5 23 108-130 547-569 (583)
290 PRK11546 zraP zinc resistance 49.3 78 0.0017 21.2 6.9 39 75-113 64-102 (143)
291 KOG2629|consensus 49.2 1.1E+02 0.0025 23.0 9.3 73 13-88 119-191 (300)
292 KOG3564|consensus 49.0 1.5E+02 0.0032 24.3 9.9 82 15-96 27-108 (604)
293 PF10211 Ax_dynein_light: Axon 48.7 92 0.002 21.8 13.6 102 39-140 86-189 (189)
294 PF15066 CAGE1: Cancer-associa 48.7 1.5E+02 0.0032 24.1 16.9 136 1-139 382-517 (527)
295 cd00890 Prefoldin Prefoldin is 48.4 69 0.0015 20.3 10.9 90 53-142 1-129 (129)
296 PF00509 Hemagglutinin: Haemag 48.4 71 0.0015 26.3 5.9 92 3-97 365-456 (550)
297 PF09744 Jnk-SapK_ap_N: JNK_SA 48.3 86 0.0019 21.4 13.5 116 29-144 21-140 (158)
298 COG3879 Uncharacterized protei 48.3 1.1E+02 0.0024 22.6 7.1 63 91-156 48-110 (247)
299 KOG2010|consensus 47.7 1.3E+02 0.0028 23.2 10.0 94 11-104 113-207 (405)
300 KOG3564|consensus 47.7 1.6E+02 0.0034 24.2 9.1 77 10-86 29-105 (604)
301 COG2882 FliJ Flagellar biosynt 47.4 86 0.0019 21.1 12.7 98 8-106 15-112 (148)
302 PLN02320 seryl-tRNA synthetase 47.4 1.6E+02 0.0035 24.2 8.7 71 16-91 93-163 (502)
303 PF15456 Uds1: Up-regulated Du 47.2 78 0.0017 20.6 10.3 79 30-109 22-111 (124)
304 PF06103 DUF948: Bacterial pro 46.8 62 0.0014 19.3 9.3 69 60-128 21-89 (90)
305 PRK10636 putative ABC transpor 46.7 1.8E+02 0.0038 24.5 9.0 77 2-78 549-632 (638)
306 TIGR03545 conserved hypothetic 46.1 1.7E+02 0.0038 24.3 13.4 137 16-153 164-301 (555)
307 KOG0239|consensus 46.0 1.9E+02 0.0041 24.7 16.2 136 9-148 175-313 (670)
308 PF10243 MIP-T3: Microtubule-b 46.0 6.8 0.00015 32.1 0.0 102 4-105 430-535 (539)
309 PF13805 Pil1: Eisosome compon 46.0 1.3E+02 0.0027 22.6 12.9 99 16-115 96-194 (271)
310 PF14257 DUF4349: Domain of un 45.9 1.2E+02 0.0025 22.2 7.4 88 15-103 104-193 (262)
311 COG2900 SlyX Uncharacterized p 45.8 61 0.0013 18.9 6.8 54 69-122 5-58 (72)
312 PF07544 Med9: RNA polymerase 45.7 65 0.0014 19.2 6.4 57 18-74 23-82 (83)
313 PRK10636 putative ABC transpor 45.7 1.8E+02 0.004 24.4 9.4 74 61-134 552-632 (638)
314 TIGR01010 BexC_CtrB_KpsE polys 45.6 1.4E+02 0.003 23.0 14.6 135 11-147 153-297 (362)
315 KOG4603|consensus 45.2 1E+02 0.0022 21.4 13.1 110 43-152 78-194 (201)
316 COG5283 Phage-related tail pro 45.1 2.5E+02 0.0054 25.8 16.5 141 7-147 27-167 (1213)
317 PF07989 Microtub_assoc: Micro 44.6 65 0.0014 18.9 8.3 72 53-124 2-74 (75)
318 PF01166 TSC22: TSC-22/dip/bun 44.5 57 0.0012 18.2 3.7 32 6-37 11-42 (59)
319 PF10224 DUF2205: Predicted co 44.5 69 0.0015 19.2 6.6 49 4-52 18-66 (80)
320 PF15294 Leu_zip: Leucine zipp 44.3 1.4E+02 0.0029 22.5 12.8 109 14-125 130-247 (278)
321 PF09755 DUF2046: Uncharacteri 43.8 1.5E+02 0.0032 22.7 18.6 138 7-144 39-179 (310)
322 TIGR00998 8a0101 efflux pump m 43.5 1.4E+02 0.003 22.4 15.0 129 12-140 76-205 (334)
323 smart00338 BRLZ basic region l 43.1 60 0.0013 18.1 5.9 43 4-46 21-63 (65)
324 PF04420 CHD5: CHD5-like prote 42.7 1.1E+02 0.0023 20.8 6.3 80 75-156 36-115 (161)
325 PLN02943 aminoacyl-tRNA ligase 42.4 1.1E+02 0.0023 27.4 6.6 66 7-72 887-952 (958)
326 PF09744 Jnk-SapK_ap_N: JNK_SA 42.2 1.1E+02 0.0024 20.8 14.1 123 22-144 21-147 (158)
327 KOG2077|consensus 41.9 2.1E+02 0.0046 24.1 10.2 102 2-103 322-423 (832)
328 PF04859 DUF641: Plant protein 41.9 1E+02 0.0022 20.3 5.7 54 56-109 78-131 (131)
329 PF04201 TPD52: Tumour protein 41.5 1.1E+02 0.0025 20.9 6.1 45 4-48 31-80 (162)
330 PF05103 DivIVA: DivIVA protei 41.5 39 0.00085 21.6 3.1 107 3-109 19-130 (131)
331 PRK11546 zraP zinc resistance 41.4 1.1E+02 0.0023 20.6 7.5 67 58-124 47-113 (143)
332 KOG4637|consensus 41.3 1.8E+02 0.0038 23.0 16.7 141 11-151 134-285 (464)
333 PF04871 Uso1_p115_C: Uso1 / p 40.9 1.1E+02 0.0023 20.3 13.7 107 6-112 2-110 (136)
334 PF14193 DUF4315: Domain of un 40.9 81 0.0018 19.0 4.8 35 108-142 2-36 (83)
335 PF09787 Golgin_A5: Golgin sub 40.8 2E+02 0.0044 23.5 15.3 142 3-144 282-429 (511)
336 PF01519 DUF16: Protein of unk 40.7 92 0.002 19.6 8.0 75 8-85 25-101 (102)
337 PF02388 FemAB: FemAB family; 40.6 1.4E+02 0.0031 23.5 6.6 62 81-146 244-305 (406)
338 PTZ00419 valyl-tRNA synthetase 40.5 1.3E+02 0.0028 26.9 6.8 66 7-72 927-992 (995)
339 PF02996 Prefoldin: Prefoldin 40.5 93 0.002 19.5 6.1 47 97-143 74-120 (120)
340 PF04912 Dynamitin: Dynamitin 40.4 1.8E+02 0.0039 22.8 14.9 134 5-141 249-388 (388)
341 COG5570 Uncharacterized small 40.4 63 0.0014 17.6 4.5 54 70-123 3-56 (57)
342 PF13949 ALIX_LYPXL_bnd: ALIX 40.2 1.5E+02 0.0033 21.9 15.1 136 18-153 24-183 (296)
343 PF08702 Fib_alpha: Fibrinogen 40.0 1.1E+02 0.0025 20.4 14.0 110 21-132 27-136 (146)
344 PF07111 HCR: Alpha helical co 39.7 2.5E+02 0.0053 24.2 18.1 144 5-148 165-358 (739)
345 TIGR00414 serS seryl-tRNA synt 39.7 1.9E+02 0.0042 23.0 11.1 102 1-102 1-106 (418)
346 cd00584 Prefoldin_alpha Prefol 39.5 1E+02 0.0022 19.7 11.4 88 53-140 1-127 (129)
347 PRK05729 valS valyl-tRNA synth 39.3 1.2E+02 0.0026 26.6 6.5 65 7-71 809-873 (874)
348 PF02388 FemAB: FemAB family; 39.3 1.9E+02 0.0041 22.8 7.2 60 13-76 239-298 (406)
349 PRK12704 phosphodiesterase; Pr 39.1 2.2E+02 0.0048 23.5 18.5 149 2-150 43-198 (520)
350 PF04129 Vps52: Vps52 / Sac2 f 38.8 2.2E+02 0.0047 23.3 9.5 70 15-84 13-82 (508)
351 COG4985 ABC-type phosphate tra 38.8 1.6E+02 0.0034 21.7 9.9 86 33-118 160-246 (289)
352 PF04880 NUDE_C: NUDE protein, 38.7 84 0.0018 21.6 4.4 52 81-137 2-53 (166)
353 KOG1760|consensus 38.5 1.1E+02 0.0024 19.9 9.0 77 54-130 19-118 (131)
354 PRK10476 multidrug resistance 38.5 1.8E+02 0.0038 22.2 15.3 119 2-120 79-207 (346)
355 TIGR00998 8a0101 efflux pump m 38.4 1.7E+02 0.0037 22.0 15.4 132 2-133 73-205 (334)
356 PRK09413 IS2 repressor TnpA; R 38.3 68 0.0015 20.5 3.8 34 121-154 71-104 (121)
357 PF10046 BLOC1_2: Biogenesis o 38.3 97 0.0021 19.1 12.4 95 21-119 5-99 (99)
358 PF03915 AIP3: Actin interacti 38.3 2.1E+02 0.0045 23.0 13.5 144 5-150 154-304 (424)
359 PF07798 DUF1640: Protein of u 38.0 1.3E+02 0.0029 20.6 18.1 146 5-156 26-173 (177)
360 PRK13169 DNA replication intia 37.5 1.1E+02 0.0024 19.5 7.1 54 3-56 2-55 (110)
361 PRK11578 macrolide transporter 37.0 1.9E+02 0.0042 22.2 9.5 87 5-91 95-184 (370)
362 KOG4010|consensus 36.8 1.2E+02 0.0027 21.3 4.9 37 3-39 45-81 (208)
363 PF14073 Cep57_CLD: Centrosome 36.7 1.5E+02 0.0032 20.7 16.5 146 3-148 19-168 (178)
364 smart00502 BBC B-Box C-termina 36.3 1.1E+02 0.0023 19.0 13.6 99 12-110 3-103 (127)
365 PLN02320 seryl-tRNA synthetase 36.3 2.4E+02 0.0053 23.2 9.7 101 38-145 68-168 (502)
366 KOG0652|consensus 35.6 1.2E+02 0.0026 23.0 5.0 52 103-154 23-74 (424)
367 PRK05729 valS valyl-tRNA synth 35.5 1.5E+02 0.0034 26.0 6.5 67 62-128 808-874 (874)
368 PF11853 DUF3373: Protein of u 34.9 46 0.001 27.0 3.1 39 6-45 22-60 (489)
369 PF06698 DUF1192: Protein of u 34.8 87 0.0019 17.5 4.7 34 102-135 23-56 (59)
370 PF09755 DUF2046: Uncharacteri 34.8 2.1E+02 0.0045 21.9 18.9 140 4-143 22-164 (310)
371 PF14362 DUF4407: Domain of un 34.4 2E+02 0.0043 21.5 16.1 147 4-156 107-273 (301)
372 PF04949 Transcrip_act: Transc 34.4 1.5E+02 0.0032 20.1 11.3 99 1-99 48-146 (159)
373 PF04508 Pox_A_type_inc: Viral 34.4 50 0.0011 14.7 2.4 20 9-28 1-20 (23)
374 PF15188 CCDC-167: Coiled-coil 34.4 1.1E+02 0.0024 18.6 8.5 80 77-156 3-85 (85)
375 PF03904 DUF334: Domain of unk 34.1 1.8E+02 0.004 21.1 13.6 145 5-156 11-155 (230)
376 KOG0249|consensus 34.0 3.2E+02 0.0069 23.8 14.2 132 11-145 137-268 (916)
377 KOG4005|consensus 33.7 1.9E+02 0.0042 21.2 8.8 69 70-138 81-149 (292)
378 KOG4593|consensus 33.7 3.1E+02 0.0067 23.6 18.7 148 3-150 145-297 (716)
379 COG0172 SerS Seryl-tRNA synthe 33.7 2.5E+02 0.0055 22.6 8.4 73 16-91 29-101 (429)
380 PRK13182 racA polar chromosome 33.6 1.6E+02 0.0036 20.4 8.4 66 77-144 83-148 (175)
381 PF07200 Mod_r: Modifier of ru 33.5 1.4E+02 0.0031 19.6 13.3 121 5-126 30-150 (150)
382 PF15254 CCDC14: Coiled-coil d 33.5 3.3E+02 0.0072 23.8 16.3 128 10-140 428-555 (861)
383 PRK01203 prefoldin subunit alp 33.1 1.4E+02 0.0031 19.6 9.4 80 68-147 3-120 (130)
384 TIGR01554 major_cap_HK97 phage 32.8 2.3E+02 0.0051 21.9 7.9 62 81-142 1-62 (378)
385 PF12004 DUF3498: Domain of un 32.5 15 0.00032 29.8 0.0 127 1-130 368-495 (495)
386 PF11570 E2R135: Coiled-coil r 32.2 1.5E+02 0.0033 19.5 13.1 110 8-117 14-136 (136)
387 PF04880 NUDE_C: NUDE protein, 32.1 1.2E+02 0.0026 20.9 4.4 52 95-150 2-53 (166)
388 TIGR03794 NHPM_micro_HlyD NHPM 32.0 2.5E+02 0.0055 22.1 17.0 144 2-145 89-251 (421)
389 PF13815 Dzip-like_N: Iguana/D 31.8 1.4E+02 0.003 19.0 5.7 43 89-131 76-118 (118)
390 KOG1655|consensus 31.8 1.9E+02 0.0041 20.6 14.5 133 14-147 17-152 (218)
391 PTZ00419 valyl-tRNA synthetase 31.5 2.4E+02 0.0052 25.3 7.1 70 62-131 926-995 (995)
392 TIGR02971 heterocyst_DevB ABC 31.4 2.3E+02 0.0049 21.3 16.0 143 5-147 58-205 (327)
393 TIGR03319 YmdA_YtgF conserved 31.1 3E+02 0.0066 22.7 18.5 149 2-150 37-192 (514)
394 PLN02943 aminoacyl-tRNA ligase 30.8 2.3E+02 0.005 25.4 6.8 67 62-128 886-952 (958)
395 KOG1961|consensus 30.7 3.3E+02 0.0072 23.0 10.6 108 5-112 35-143 (683)
396 PF13094 CENP-Q: CENP-Q, a CEN 30.7 1.7E+02 0.0037 19.6 9.8 123 32-154 22-159 (160)
397 PF04871 Uso1_p115_C: Uso1 / p 30.5 1.6E+02 0.0035 19.4 13.6 107 27-133 2-110 (136)
398 PRK14140 heat shock protein Gr 30.4 2E+02 0.0043 20.3 6.4 47 9-55 37-83 (191)
399 PF15450 DUF4631: Domain of un 30.2 3.2E+02 0.0069 22.6 16.3 142 5-148 340-482 (531)
400 TIGR02209 ftsL_broad cell divi 30.1 1.2E+02 0.0026 17.7 5.1 39 90-128 21-59 (85)
401 KOG4438|consensus 30.1 2.9E+02 0.0064 22.2 17.4 145 4-148 126-275 (446)
402 PRK10869 recombination and rep 30.0 3.2E+02 0.007 22.7 16.6 146 5-151 147-312 (553)
403 PF14584 DUF4446: Protein of u 30.0 1.1E+02 0.0024 20.6 3.9 46 104-149 43-88 (151)
404 KOG4593|consensus 29.9 3.6E+02 0.0079 23.2 18.3 142 7-148 128-271 (716)
405 PRK13182 racA polar chromosome 29.6 1.9E+02 0.0042 20.0 7.9 59 63-121 83-146 (175)
406 COG4717 Uncharacterized conser 29.5 4.1E+02 0.0089 23.7 17.5 150 3-154 684-844 (984)
407 KOG3335|consensus 29.3 75 0.0016 22.1 2.9 45 8-52 105-149 (181)
408 KOG0642|consensus 28.9 1.2E+02 0.0026 25.1 4.4 73 81-153 22-94 (577)
409 COG0497 RecN ATPase involved i 28.9 3.5E+02 0.0075 22.7 12.1 119 23-145 255-373 (557)
410 PLN02381 valyl-tRNA synthetase 28.8 2.2E+02 0.0047 25.9 6.4 66 7-72 995-1060(1066)
411 PF00509 Hemagglutinin: Haemag 28.6 2.2E+02 0.0047 23.7 5.8 92 38-132 365-456 (550)
412 PF05546 She9_MDM33: She9 / Md 28.6 2.2E+02 0.0049 20.4 13.8 122 19-144 5-129 (207)
413 PRK15178 Vi polysaccharide exp 28.4 3.2E+02 0.0069 22.1 11.1 123 22-144 241-367 (434)
414 KOG4460|consensus 28.4 3.6E+02 0.0078 22.7 16.9 139 4-142 583-737 (741)
415 KOG3091|consensus 28.3 3.4E+02 0.0073 22.3 11.0 110 25-138 336-445 (508)
416 COG1730 GIM5 Predicted prefold 28.0 1.9E+02 0.0042 19.4 12.1 95 49-143 4-137 (145)
417 PRK14900 valS valyl-tRNA synth 27.9 2.8E+02 0.0061 25.1 6.9 66 62-127 839-904 (1052)
418 PF15030 DUF4527: Protein of u 27.9 2.5E+02 0.0055 20.7 14.2 122 33-154 12-133 (277)
419 PF14817 HAUS5: HAUS augmin-li 27.8 3.8E+02 0.0083 22.8 12.2 90 4-93 74-163 (632)
420 PF10243 MIP-T3: Microtubule-b 27.7 20 0.00043 29.4 0.0 103 35-140 433-535 (539)
421 PRK15178 Vi polysaccharide exp 27.6 3.3E+02 0.0072 22.0 11.8 111 11-123 225-337 (434)
422 PRK14160 heat shock protein Gr 27.4 2.4E+02 0.0051 20.3 8.0 65 20-84 44-108 (211)
423 PRK14900 valS valyl-tRNA synth 27.4 2.6E+02 0.0057 25.3 6.7 65 7-71 840-904 (1052)
424 PF03670 UPF0184: Uncharacteri 27.3 1.5E+02 0.0032 17.9 6.2 47 9-55 26-72 (83)
425 PF04129 Vps52: Vps52 / Sac2 f 27.3 3.5E+02 0.0076 22.2 10.5 76 51-126 7-82 (508)
426 PRK14160 heat shock protein Gr 27.3 2.4E+02 0.0052 20.3 8.5 71 82-156 50-120 (211)
427 PF08606 Prp19: Prp19/Pso4-lik 27.0 1.4E+02 0.003 17.4 7.6 60 32-91 10-69 (70)
428 TIGR00952 S15_bact ribosomal p 26.9 1.5E+02 0.0033 17.9 4.4 66 85-150 2-67 (86)
429 COG0497 RecN ATPase involved i 26.8 3.8E+02 0.0083 22.4 12.2 117 5-125 258-374 (557)
430 COG4717 Uncharacterized conser 26.5 4.7E+02 0.01 23.4 11.1 115 33-147 553-667 (984)
431 COG5493 Uncharacterized conser 26.4 2.5E+02 0.0053 20.1 8.8 70 78-147 45-114 (231)
432 PF11853 DUF3373: Protein of u 26.4 74 0.0016 25.9 2.9 38 1-38 23-60 (489)
433 PRK05626 rpsO 30S ribosomal pr 26.2 1.6E+02 0.0035 17.9 4.6 66 85-150 5-70 (89)
434 PF04350 PilO: Pilus assembly 25.9 1.6E+02 0.0034 19.0 4.1 53 102-154 1-56 (144)
435 PF08286 Spc24: Spc24 subunit 25.6 24 0.00052 22.6 0.1 45 95-139 1-45 (118)
436 KOG0244|consensus 25.6 4.9E+02 0.011 23.3 12.8 137 3-139 468-604 (913)
437 TIGR02132 phaR_Bmeg polyhydrox 25.4 2.4E+02 0.0053 19.7 12.1 105 15-119 71-176 (189)
438 COG2919 Septum formation initi 25.2 1.9E+02 0.0041 18.4 5.2 65 89-156 46-110 (117)
439 PRK14155 heat shock protein Gr 25.1 2.6E+02 0.0057 20.0 5.7 44 5-48 16-59 (208)
440 KOG3215|consensus 25.1 2.6E+02 0.0057 20.0 12.9 121 32-153 35-155 (222)
441 PF05600 DUF773: Protein of un 25.0 3.9E+02 0.0085 22.0 12.3 98 33-130 400-497 (507)
442 PLN02381 valyl-tRNA synthetase 24.9 3.1E+02 0.0067 25.0 6.6 72 53-124 992-1063(1066)
443 TIGR01554 major_cap_HK97 phage 24.9 3.3E+02 0.0072 21.1 8.2 67 60-126 1-67 (378)
444 PF09311 Rab5-bind: Rabaptin-l 24.9 76 0.0017 22.0 2.5 138 15-152 7-148 (181)
445 PF05565 Sipho_Gp157: Siphovir 24.9 2.3E+02 0.0049 19.2 9.2 86 67-155 3-88 (162)
446 PRK11578 macrolide transporter 24.8 3.3E+02 0.0071 21.0 10.2 87 12-98 95-184 (370)
447 cd00890 Prefoldin Prefoldin is 24.8 1.9E+02 0.0041 18.2 10.6 86 60-145 1-125 (129)
448 PF13600 DUF4140: N-terminal d 24.5 1.8E+02 0.0038 17.8 4.4 34 94-127 71-104 (104)
449 PRK10361 DNA recombination pro 24.2 4E+02 0.0087 21.8 18.6 136 3-142 54-193 (475)
450 TIGR01242 26Sp45 26S proteasom 24.2 2.2E+02 0.0048 21.9 5.2 40 11-50 1-40 (364)
451 PRK00106 hypothetical protein; 23.6 4.3E+02 0.0094 22.0 17.2 129 13-143 36-168 (535)
452 PF06148 COG2: COG (conserved 23.5 1.9E+02 0.0042 18.6 4.1 64 90-153 59-122 (133)
453 PF00957 Synaptobrevin: Synapt 23.5 1.7E+02 0.0037 17.3 9.5 78 79-156 3-80 (89)
454 KOG3433|consensus 23.4 2.7E+02 0.0059 19.6 11.8 120 25-144 41-160 (203)
455 PF09787 Golgin_A5: Golgin sub 23.4 4.2E+02 0.0091 21.7 16.2 141 6-146 211-362 (511)
456 PF08181 DegQ: DegQ (SacQ) fam 23.1 1.2E+02 0.0026 15.5 4.3 41 113-153 3-43 (46)
457 KOG0240|consensus 23.0 4.6E+02 0.01 22.1 15.3 144 4-147 354-503 (607)
458 KOG4438|consensus 23.0 4.1E+02 0.0088 21.4 17.2 146 5-150 134-284 (446)
459 PF04136 Sec34: Sec34-like fam 22.9 2.5E+02 0.0054 19.0 9.5 71 5-75 3-73 (157)
460 PF15458 NTR2: Nineteen comple 22.9 3.2E+02 0.0069 20.1 6.2 49 56-104 206-254 (254)
461 KOG2685|consensus 22.8 4E+02 0.0088 21.3 13.0 113 34-146 275-397 (421)
462 TIGR01063 gyrA DNA gyrase, A s 22.7 2.9E+02 0.0062 24.2 5.9 48 98-145 425-472 (800)
463 PF07334 IFP_35_N: Interferon- 22.7 1.8E+02 0.0039 17.2 3.4 35 116-150 2-36 (76)
464 COG3206 GumC Uncharacterized p 22.7 4E+02 0.0087 21.3 15.5 147 5-153 242-393 (458)
465 TIGR01801 CM_A chorismate muta 22.3 2.1E+02 0.0045 17.8 4.7 40 107-146 4-43 (102)
466 smart00503 SynN Syntaxin N-ter 22.2 2E+02 0.0044 17.7 11.8 94 51-144 8-112 (117)
467 PRK14162 heat shock protein Gr 22.1 3E+02 0.0064 19.5 6.9 51 9-59 39-89 (194)
468 PF06419 COG6: Conserved oligo 22.0 4.9E+02 0.011 22.0 8.6 66 5-70 41-106 (618)
469 PF09403 FadA: Adhesion protei 22.0 2.4E+02 0.0052 18.4 13.2 99 5-107 23-121 (126)
470 KOG3647|consensus 21.8 3.6E+02 0.0077 20.3 12.7 121 26-146 66-186 (338)
471 PF06705 SF-assemblin: SF-asse 21.7 3.2E+02 0.007 19.8 17.7 131 15-145 4-138 (247)
472 PF10368 YkyA: Putative cell-w 21.6 3E+02 0.0066 19.5 15.7 144 1-146 60-203 (204)
473 KOG0614|consensus 21.4 4.5E+02 0.0097 22.2 6.3 53 96-148 20-72 (732)
474 KOG3335|consensus 21.3 1.4E+02 0.0031 20.7 3.1 47 99-145 105-151 (181)
475 PF07716 bZIP_2: Basic region 21.3 1.5E+02 0.0033 15.8 5.0 35 4-38 20-54 (54)
476 PF10018 Med4: Vitamin-D-recep 21.3 2.9E+02 0.0063 19.2 8.3 59 81-140 4-62 (188)
477 COG4985 ABC-type phosphate tra 21.2 3.5E+02 0.0075 19.9 9.8 86 12-97 160-246 (289)
478 TIGR02971 heterocyst_DevB ABC 21.1 3.6E+02 0.0079 20.2 16.1 150 7-156 53-207 (327)
479 PRK15048 methyl-accepting chem 21.1 4.6E+02 0.01 21.4 16.3 118 7-127 397-514 (553)
480 smart00283 MA Methyl-accepting 21.0 3.1E+02 0.0067 19.3 15.2 116 5-120 147-262 (262)
481 COG1315 Uncharacterized conser 21.0 4.9E+02 0.011 21.6 7.0 78 6-83 407-486 (543)
482 KOG3856|consensus 20.9 2.6E+02 0.0056 18.3 4.9 36 88-123 12-47 (135)
483 TIGR01730 RND_mfp RND family e 20.7 3.5E+02 0.0077 19.9 8.2 73 5-77 60-135 (322)
484 PF09340 NuA4: Histone acetylt 20.3 2.1E+02 0.0045 17.0 4.5 31 93-123 2-32 (80)
485 KOG0353|consensus 20.3 2.7E+02 0.0059 22.3 4.8 47 102-148 6-52 (695)
486 COG4238 Murein lipoprotein [Ce 20.3 2E+02 0.0044 16.9 6.7 53 8-60 24-76 (78)
487 PRK07737 fliD flagellar cappin 20.3 4.9E+02 0.011 21.3 7.3 55 3-60 442-496 (501)
488 PHA02047 phage lambda Rz1-like 20.1 2.3E+02 0.0051 17.6 5.6 44 2-45 34-77 (101)
489 PF09766 FimP: Fms-interacting 20.0 4.3E+02 0.0093 20.6 14.0 141 6-146 2-154 (355)
No 1
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.43 E-value=0.00014 Score=48.60 Aligned_cols=134 Identities=18% Similarity=0.249 Sum_probs=65.0
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHH---hHHh
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS---ELHG 83 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 83 (156)
++.+.+.+......+...+..++........++..+. ..+..+..++..+...+......+..... ....
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~-------~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~ 77 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQ-------KKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQ 77 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Confidence 3344444444444444444444444444444444444 44444444444444444444333333322 1224
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhh
Q psy5576 84 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLN 147 (156)
Q Consensus 84 ~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~ 147 (156)
+...+..+...+......+.....++.........+...+..+..+.......++.+...|.-+
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555556666666666666666666665555433
No 2
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.42 E-value=0.00012 Score=52.54 Aligned_cols=113 Identities=28% Similarity=0.474 Sum_probs=49.0
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHH--hHHhhHHHH
Q psy5576 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS--ELHGLKSEL 88 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~ 88 (156)
++.+...+......+..+...+..+...+..+...+..++.++..++..+..+...+...+..+..... ++..+..++
T Consensus 19 ~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~ 98 (239)
T COG1579 19 KDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEI 98 (239)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 333444444444444444444455555555555555555555555555555555554444444422221 233333344
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576 89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123 (156)
Q Consensus 89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i 123 (156)
..+......+..++..+...+..+..++..+...+
T Consensus 99 ~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 99 QIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333333333333333333333333333
No 3
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.36 E-value=0.00034 Score=50.68 Aligned_cols=57 Identities=18% Similarity=0.291 Sum_probs=24.3
Q ss_pred HhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576 82 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 138 (156)
Q Consensus 82 ~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~ 138 (156)
..+...+..+...+.........++.....|...++.+...+...+.....+...++
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444444444444444443
No 4
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.30 E-value=0.00028 Score=50.78 Aligned_cols=48 Identities=31% Similarity=0.467 Sum_probs=21.4
Q ss_pred HHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q psy5576 60 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 107 (156)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~ 107 (156)
+..+..+++.++.+...+..++..+..++..+...+..+...+..++.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444443333
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.28 E-value=0.00024 Score=61.72 Aligned_cols=46 Identities=30% Similarity=0.552 Sum_probs=19.3
Q ss_pred HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhh
Q psy5576 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 53 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 53 (156)
..++..+...+..+...+..+...+..+...+..+...+..+...+
T Consensus 676 ~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 721 (1179)
T TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL 721 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433333333333
No 6
>PRK09039 hypothetical protein; Validated
Probab=98.20 E-value=0.00045 Score=52.68 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=24.3
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhH
Q psy5576 73 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 133 (156)
Q Consensus 73 ~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~ 133 (156)
++...+.......-.+..++.++..++..+..++..+...+.+....+..|..+...+...
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444444444444444444444444333333
No 7
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.19 E-value=0.00056 Score=45.66 Aligned_cols=132 Identities=16% Similarity=0.256 Sum_probs=75.4
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 84 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
++.....+.+...+..+.......+..+..+......+...+..+...+......+..........+ .+...+..+
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~l~rriq~L 85 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----QLNRRIQLL 85 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----HHHhhHHHH
Confidence 3444455555555555555555555555555555555555555555555555555444444333322 555555566
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
+.+++.....+......+.........+...+..+......+..++..+...+..+
T Consensus 86 Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 86 EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666555443
No 8
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.19 E-value=0.00099 Score=48.26 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=21.3
Q ss_pred HHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhH
Q psy5576 25 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 81 (156)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (156)
+..++..+..+..........+......+..+...+.........+...+..+..++
T Consensus 94 i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL 150 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333
No 9
>KOG0250|consensus
Probab=98.12 E-value=0.00074 Score=57.29 Aligned_cols=58 Identities=19% Similarity=0.443 Sum_probs=21.9
Q ss_pred hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhH
Q psy5576 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 67 (156)
.++.....+..+...+.+.+.+++.+..+...-..++..+...+.........+...+
T Consensus 303 ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~ 360 (1074)
T KOG0250|consen 303 KIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEI 360 (1074)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444333333333333333333333333333333333
No 10
>PRK09039 hypothetical protein; Validated
Probab=98.04 E-value=0.0013 Score=50.15 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=23.2
Q ss_pred hHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576 80 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 138 (156)
Q Consensus 80 ~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~ 138 (156)
++........+....+..+..++..+..++..++..++..+....+....+.++...++
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444444444443344444444443333
No 11
>KOG0933|consensus
Probab=98.00 E-value=0.0012 Score=55.73 Aligned_cols=146 Identities=23% Similarity=0.280 Sum_probs=99.9
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHH
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 82 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (156)
|-..+..+|..+...++.-...+......+..+.-+.+++...+...+..+..+...+..+..++..+...+........
T Consensus 788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~ 867 (1174)
T KOG0933|consen 788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVK 867 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence 33455666666666666666677777777777777777777777777777777766666666666666666666666655
Q ss_pred hhHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhh
Q psy5576 83 GLKSELHGLKSELHGLKSE-------LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNC 148 (156)
Q Consensus 83 ~~~~e~~~l~~~~~~~~~~-------~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~ 148 (156)
....++......+.....+ ......+.....-.+..+..++..+...-......++.+-..|+|+-
T Consensus 868 ~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 868 KAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 5555555555555444444 44455555566666777777778888888888888999999999986
No 12
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.94 E-value=0.0037 Score=47.40 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=9.7
Q ss_pred HHHhhhHhhhhhhhhHhh
Q psy5576 136 ELHGLKSELGLNCYLTYF 153 (156)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~ 153 (156)
++..++..+..|+.++-+
T Consensus 277 Ev~~Lk~~~~~Le~~~gw 294 (325)
T PF08317_consen 277 EVKRLKAKVDALEKLTGW 294 (325)
T ss_pred HHHHHHHHHHHHHHHHCc
Confidence 345555555555555543
No 13
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.94 E-value=0.004 Score=47.23 Aligned_cols=81 Identities=27% Similarity=0.383 Sum_probs=39.8
Q ss_pred HHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHh----HHHhHhhHHHHHHhhhH
Q psy5576 67 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG----LKSELHGLKSELHGLKS 142 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~----l~~~~~~~~~~~~~l~~ 142 (156)
+..+..++......+.....++.++..++..+...+..+..+...+..++.+++..... -..++..+......++.
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444433332 22456677777777777
Q ss_pred hhhhh
Q psy5576 143 ELGLN 147 (156)
Q Consensus 143 ~~~~~ 147 (156)
..||.
T Consensus 291 ~~gw~ 295 (325)
T PF08317_consen 291 LTGWK 295 (325)
T ss_pred HHCcE
Confidence 77663
No 14
>PRK11637 AmiB activator; Provisional
Probab=97.89 E-value=0.0071 Score=47.57 Aligned_cols=61 Identities=10% Similarity=0.237 Sum_probs=22.6
Q ss_pred HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHH
Q psy5576 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 68 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 68 (156)
+.+|..+..++..+...+..+...+..+...+..+...+..+..++..+..++..+..++.
T Consensus 53 ~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~ 113 (428)
T PRK11637 53 QQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIA 113 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333333333
No 15
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.75 E-value=0.0093 Score=44.82 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=20.6
Q ss_pred HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhh
Q psy5576 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 45 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (156)
+.++..|...+..+-..+..++..=..+...+..+...
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 44566666666666666666666655555555554444
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=97.72 E-value=0.0085 Score=51.15 Aligned_cols=6 Identities=17% Similarity=0.218 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy5576 105 LKSELH 110 (156)
Q Consensus 105 l~~~l~ 110 (156)
+...+.
T Consensus 685 l~~~i~ 690 (880)
T PRK03918 685 LEKRRE 690 (880)
T ss_pred HHHHHH
Confidence 333333
No 17
>PRK11637 AmiB activator; Provisional
Probab=97.68 E-value=0.017 Score=45.52 Aligned_cols=69 Identities=12% Similarity=0.269 Sum_probs=28.1
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHH
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 77 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 77 (156)
.+++.+..++......+......+..+..++..+..++..+...+..+..++..+..++..+..++..+
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444444444444444433333
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.65 E-value=0.019 Score=48.23 Aligned_cols=23 Identities=48% Similarity=0.603 Sum_probs=8.6
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHH
Q psy5576 11 LDGLKSELHGLKSELHGLKSELH 33 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~ 33 (156)
++.+..++......+..+...+.
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~ 311 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLE 311 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 19
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.65 E-value=0.014 Score=43.95 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=7.9
Q ss_pred hHhhHHHHHHhhhHhhhh
Q psy5576 129 ELHGLKSELHGLKSELGL 146 (156)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~ 146 (156)
++..+......++..+||
T Consensus 272 Ei~~Lk~~~~~Le~l~g~ 289 (312)
T smart00787 272 EIEKLKEQLKLLQSLTGW 289 (312)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 334444444444444444
No 20
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.64 E-value=0.015 Score=47.50 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=59.6
Q ss_pred HHhhHHhHHHhhhhhHhhHHhHHHh----------HHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5576 42 LKSELHGLKSELHGLKSELHGLKSE----------LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 111 (156)
Q Consensus 42 ~~~~l~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~ 111 (156)
+...+..+......+..++..+... ...+..++..+...+..+...+.......+.+......+..++..
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444 445555555555555555555555555556666666666666666
Q ss_pred HHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhh
Q psy5576 112 LKSELHGLKSELHGLKSELHGLKSELHGLKSELGLN 147 (156)
Q Consensus 112 l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~ 147 (156)
+......+...+..+...-..+...+..+...+.-+
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i 430 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI 430 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666655554433
No 21
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.61 E-value=0.01 Score=41.17 Aligned_cols=99 Identities=26% Similarity=0.304 Sum_probs=41.1
Q ss_pred HhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5576 43 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122 (156)
Q Consensus 43 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 122 (156)
.+++.+++.-...++.....+-.+...++.+...+-..+..++.+...+......+......+......|..++-..+.-
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l 145 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESL 145 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444333333
Q ss_pred HHhHHHhHhhHHHHHHhhh
Q psy5576 123 LHGLKSELHGLKSELHGLK 141 (156)
Q Consensus 123 i~~l~~~~~~~~~~~~~l~ 141 (156)
+.....-+.+....+..+.
T Consensus 146 ~~~~da~l~e~t~~i~eL~ 164 (193)
T PF14662_consen 146 ICQRDAILSERTQQIEELK 164 (193)
T ss_pred HHHHHHHHHHHHhhHHHHH
Confidence 3333333333344444444
No 22
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.60 E-value=0.017 Score=43.54 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=14.7
Q ss_pred HHHHhhhHhhhhhhhhHhhhc
Q psy5576 135 SELHGLKSELGLNCYLTYFLF 155 (156)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~~~ 155 (156)
.++..+...+..+..++.+-|
T Consensus 271 ~Ei~~Lk~~~~~Le~l~g~~~ 291 (312)
T smart00787 271 KEIEKLKEQLKLLQSLTGWKI 291 (312)
T ss_pred HHHHHHHHHHHHHHHHhCCee
Confidence 456777778888877776544
No 23
>KOG0161|consensus
Probab=97.56 E-value=0.023 Score=51.84 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=12.6
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHH
Q psy5576 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLK 43 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (156)
+.++...++....+...+......+...++.+.
T Consensus 994 ~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le 1026 (1930)
T KOG0161|consen 994 IRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLE 1026 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 24
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.53 E-value=0.024 Score=50.61 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=26.3
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhH
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 49 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 49 (156)
+|..+..+++.+...+..+...+..+...+..+...+..+...+..+
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 34555566666666666665555555555555555555555444443
No 25
>KOG0933|consensus
Probab=97.51 E-value=0.036 Score=47.23 Aligned_cols=132 Identities=19% Similarity=0.319 Sum_probs=56.1
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhH-----------HhhHHhHHHhhhhhHhhHHhHHHhHHhhHH
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGL-----------KSELHGLKSELHGLKSELHGLKSELHGLKS 72 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 72 (156)
...+..++.++..+|.+....+..+..++..++...... ...+........+.......-..+++.+..
T Consensus 743 ~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~l 822 (1174)
T KOG0933|consen 743 LKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQL 822 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665555555554444333222 222222222222222223333333333333
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHH
Q psy5576 73 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 135 (156)
Q Consensus 73 ~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~ 135 (156)
+.+.+..++...+..+.++...++.+..++..+...+............++......+.....
T Consensus 823 E~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt 885 (1174)
T KOG0933|consen 823 EHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDT 885 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhH
Confidence 333334444444444444444444444444444444444444444444444444444433333
No 26
>KOG0161|consensus
Probab=97.50 E-value=0.029 Score=51.22 Aligned_cols=122 Identities=23% Similarity=0.353 Sum_probs=56.1
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 84 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
..+..++.++..++...+.....++.+...+..++..+...+.+....+..+..+.......+..+..++..+...+..+
T Consensus 904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL 983 (1930)
T KOG0161|consen 904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKL 983 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555444444444444444444455555555554444444444444444555555555444444444444
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhH
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 126 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l 126 (156)
..+...+...+..+...+...+.+...+......+...+.++
T Consensus 984 ~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~l 1025 (1930)
T KOG0161|consen 984 SKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDL 1025 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433333333333333333
No 27
>KOG0996|consensus
Probab=97.47 E-value=0.023 Score=49.07 Aligned_cols=9 Identities=33% Similarity=0.660 Sum_probs=3.3
Q ss_pred HHhHHHHHH
Q psy5576 11 LDGLKSELH 19 (156)
Q Consensus 11 i~~l~~~l~ 19 (156)
|+.+..+++
T Consensus 867 ie~l~kE~e 875 (1293)
T KOG0996|consen 867 IEELKKEVE 875 (1293)
T ss_pred HHHHHHHHH
Confidence 333333333
No 28
>KOG0996|consensus
Probab=97.37 E-value=0.05 Score=47.10 Aligned_cols=49 Identities=31% Similarity=0.314 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 102 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 102 ~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
+.+....+..+..+...+......+..++.++...++.......+|..|
T Consensus 558 ~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al 606 (1293)
T KOG0996|consen 558 LKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDAL 606 (1293)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3333333333333333333333444444444444444444444444433
No 29
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.33 E-value=0.059 Score=44.06 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=2.5
Q ss_pred HHhHHhh
Q psy5576 39 LHGLKSE 45 (156)
Q Consensus 39 ~~~~~~~ 45 (156)
+..+...
T Consensus 319 l~~~~e~ 325 (569)
T PRK04778 319 LEHAKEQ 325 (569)
T ss_pred HHHHHHH
Confidence 3333333
No 30
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.33 E-value=0.053 Score=45.19 Aligned_cols=83 Identities=24% Similarity=0.292 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHH
Q psy5576 16 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95 (156)
Q Consensus 16 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~ 95 (156)
..|.+++..+..+...+.....+.+.+......+......++.+...++.++..++..-.++-..+..++.+.-.+...+
T Consensus 34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqv 113 (717)
T PF09730_consen 34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQV 113 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555556666666666666666665555555565555555555554
Q ss_pred HhH
Q psy5576 96 HGL 98 (156)
Q Consensus 96 ~~~ 98 (156)
+.+
T Consensus 114 s~L 116 (717)
T PF09730_consen 114 SVL 116 (717)
T ss_pred HHH
Confidence 433
No 31
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.32 E-value=0.026 Score=39.21 Aligned_cols=7 Identities=14% Similarity=0.544 Sum_probs=2.5
Q ss_pred HHhHHHH
Q psy5576 11 LDGLKSE 17 (156)
Q Consensus 11 i~~l~~~ 17 (156)
+..|..+
T Consensus 45 ~~~L~~q 51 (193)
T PF14662_consen 45 ITDLRKQ 51 (193)
T ss_pred HHHHHHH
Confidence 3333333
No 32
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=97.26 E-value=0.04 Score=40.24 Aligned_cols=111 Identities=26% Similarity=0.337 Sum_probs=64.0
Q ss_pred hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHH
Q psy5576 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 89 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 89 (156)
.|.+++.+++.+.+.-+.-.=.++.+...+..-......-...+..+..+...+...+.+++.....+..++..-+..+.
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~ 98 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVN 98 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHH
Confidence 45555555555555555555555555555555555555556666666666666666666666666666666666666666
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q psy5576 90 GLKSELHGLKSELHGLKSELHGLKSELHGLK 120 (156)
Q Consensus 90 ~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 120 (156)
-+...+......+..++.++..+..++...+
T Consensus 99 ~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 99 FLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555555555555555554444444333
No 33
>KOG0977|consensus
Probab=97.24 E-value=0.056 Score=43.54 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=32.5
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHh
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKS 44 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (156)
|..-|.+|..|...+..+-..+..++.+=..+..++..+..
T Consensus 37 R~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~ 77 (546)
T KOG0977|consen 37 REREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRG 77 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56678899999999999888888888887777777766654
No 34
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.23 E-value=0.071 Score=48.11 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 105 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 105 l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
+..-+....+.+......+..++.++......+..+...+..++.+
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~ 485 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKI 485 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666666666666777777777777777777766666554
No 35
>KOG0977|consensus
Probab=97.15 E-value=0.094 Score=42.28 Aligned_cols=99 Identities=29% Similarity=0.394 Sum_probs=44.9
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 86 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|..++..+..-+++.......++.++..+..++..+...+.............+......+..++.++..++..+..+..
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 34444445555555544455555555555555554444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q psy5576 87 ELHGLKSELHGLKSELHGL 105 (156)
Q Consensus 87 e~~~l~~~~~~~~~~~~~l 105 (156)
+...+..+...+...+..+
T Consensus 170 e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARA 188 (546)
T ss_pred HHHHHHHHhhhhHHHHHHH
Confidence 4444444444433333333
No 36
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=97.15 E-value=0.07 Score=41.07 Aligned_cols=133 Identities=21% Similarity=0.294 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHH
Q psy5576 14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 93 (156)
Q Consensus 14 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~ 93 (156)
.+.-++.+..-...+...+...+..+..+...+...-. .+...-..+..++..+-.+......++............
T Consensus 218 WR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~le---kI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~ 294 (359)
T PF10498_consen 218 WRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLE---KIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASE 294 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444444444432222 222233333444555555555555556666666666666
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHHhHH------hHHHhHhhHHHHHHhhhHhhhhhhh
Q psy5576 94 ELHGLKSELHGLKSELHGLKSELHGLKSELH------GLKSELHGLKSELHGLKSELGLNCY 149 (156)
Q Consensus 94 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~------~l~~~~~~~~~~~~~l~~~~~~~~~ 149 (156)
.+......+..+..++..++.++++-...+. .++.-+..++.++..+.-++|++..
T Consensus 295 ~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVleh 356 (359)
T PF10498_consen 295 GVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLEH 356 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheehh
Confidence 6666666666666666666666666654443 5667778888888888888887754
No 37
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.15 E-value=0.15 Score=46.07 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=23.0
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhH
Q psy5576 73 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 133 (156)
Q Consensus 73 ~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~ 133 (156)
.+..+...+......+..+...+......+..++.++..+..++......+..+..+....
T Consensus 356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~ 416 (1486)
T PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQY 416 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333333333
No 38
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.12 E-value=0.033 Score=36.62 Aligned_cols=84 Identities=27% Similarity=0.339 Sum_probs=36.5
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 88 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 88 (156)
.++..+..++..+..........+..+..++..........+..+..--..-......+..++.+...+...+..+..+.
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~ 82 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEA 82 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554444444444444444444444444444444333322333333344444444444444444444444
Q ss_pred HHHH
Q psy5576 89 HGLK 92 (156)
Q Consensus 89 ~~l~ 92 (156)
+...
T Consensus 83 ~~a~ 86 (132)
T PF07926_consen 83 ESAK 86 (132)
T ss_pred HHHH
Confidence 4333
No 39
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=97.11 E-value=0.0077 Score=42.29 Aligned_cols=104 Identities=29% Similarity=0.361 Sum_probs=29.3
Q ss_pred HHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy5576 29 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 108 (156)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~ 108 (156)
...+..++.++..+...-..+..++..+...+..+...+......+..+......+..++..+...+......+..+..+
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE 152 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDE 152 (194)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhHHHhHHhHHHhHhh
Q psy5576 109 LHGLKSELHGLKSELHGLKSELHG 132 (156)
Q Consensus 109 l~~l~~~~~~~~~~i~~l~~~~~~ 132 (156)
+..|.-+.+.++..+..+..+-..
T Consensus 153 ~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 153 LQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333
No 40
>KOG4643|consensus
Probab=97.11 E-value=0.15 Score=43.76 Aligned_cols=142 Identities=22% Similarity=0.200 Sum_probs=78.3
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhh---HhhHHhHHHhHHhhHHhHHHHHHhHHh
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL---KSELHGLKSELHGLKSELHGLKSELHG 83 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (156)
|..+++.|...+..+.....+++.....+..+.+.+..........+..- ......+.....+.......+...+.+
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666665555444433322 233444444444455555555555555
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhh
Q psy5576 84 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNC 148 (156)
Q Consensus 84 ~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~ 148 (156)
+..-++.....++.+......+..++..+..+...+......+...+..++++-..+-.++-.||
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk 557 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLK 557 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555544444
No 41
>KOG0978|consensus
Probab=97.07 E-value=0.097 Score=43.39 Aligned_cols=129 Identities=26% Similarity=0.307 Sum_probs=65.9
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHH
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 82 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (156)
.+.........|..+...+...+..+......+...+..+......+......+..++..+...+...............
T Consensus 490 e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~ 569 (698)
T KOG0978|consen 490 ERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLE 569 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHh
Q psy5576 83 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 131 (156)
Q Consensus 83 ~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~ 131 (156)
.+..+.+.....+.+++....+....+..+......++.++..+...+.
T Consensus 570 ~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 570 DLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554444444444444444444444444333
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.06 E-value=0.14 Score=42.83 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=5.3
Q ss_pred HhhHHhHHHHHHH
Q psy5576 8 KSELDGLKSELHG 20 (156)
Q Consensus 8 ~~ei~~l~~~l~~ 20 (156)
..++..|+.++..
T Consensus 424 E~dvkkLraeLq~ 436 (697)
T PF09726_consen 424 EADVKKLRAELQS 436 (697)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444333
No 43
>KOG4674|consensus
Probab=97.04 E-value=0.2 Score=45.66 Aligned_cols=131 Identities=29% Similarity=0.334 Sum_probs=68.1
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHH
Q psy5576 15 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 94 (156)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~ 94 (156)
.+++..+...+..+..++..+....-++...+......-...+....++.++..-+......+..++.....++..+..+
T Consensus 135 ~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re 214 (1822)
T KOG4674|consen 135 KAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRRE 214 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444444444433333333444555555555556666666666666666665555555
Q ss_pred ----HHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhh
Q psy5576 95 ----LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145 (156)
Q Consensus 95 ----~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~ 145 (156)
+..+...+..+...+..+...+..+......+...+......+..+...++
T Consensus 215 ~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~ 269 (1822)
T KOG4674|consen 215 HSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAE 269 (1822)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 555555566665666666666665655555555555555555555444443
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.03 E-value=0.084 Score=39.67 Aligned_cols=119 Identities=26% Similarity=0.336 Sum_probs=61.8
Q ss_pred hHHhHHHHHHHHHHhHHhHHHHH-HHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576 10 ELDGLKSELHGLKSELHGLKSEL-HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 88 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 88 (156)
.+..|..+-..+..++..+.... .............+..++..+..+..+...+..++.++...+..+...+.......
T Consensus 19 kVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~ 98 (312)
T PF00038_consen 19 KVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAER 98 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444331 11222233445556666666666666666666666666666666666666555556
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHH
Q psy5576 89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 128 (156)
Q Consensus 89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~ 128 (156)
..+...+..+...+.........++.++..+..++..+..
T Consensus 99 ~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 99 KDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 6666666666666665555555666666666655555443
No 45
>KOG0964|consensus
Probab=97.03 E-value=0.18 Score=43.25 Aligned_cols=102 Identities=23% Similarity=0.381 Sum_probs=55.6
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHh
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 83 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (156)
|..+-..++....++.++...+..+...+....++++.+.........++.........+..++..+..+...+...+.-
T Consensus 666 rLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~ 745 (1200)
T KOG0964|consen 666 RLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEP 745 (1200)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH
Confidence 33444455555556666666666666666666566666655555555555555555555555555555555555555444
Q ss_pred hHHHHHHHHHHHHhHHHHHHHH
Q psy5576 84 LKSELHGLKSELHGLKSELHGL 105 (156)
Q Consensus 84 ~~~e~~~l~~~~~~~~~~~~~l 105 (156)
....+..+...+..+......+
T Consensus 746 k~~~Le~i~~~l~~~~~~~~~~ 767 (1200)
T KOG0964|consen 746 KGKELEEIKTSLHKLESQSNYF 767 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 4444444444444444333333
No 46
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.98 E-value=0.09 Score=39.08 Aligned_cols=72 Identities=19% Similarity=0.368 Sum_probs=42.9
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHH
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 75 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 75 (156)
|..+..++..+...-+.+..++..+......+....+.+...+..++....++...+..+...+..+.....
T Consensus 29 R~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 29 RDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666666666666666666666666666666666666555555555555554444444443
No 47
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.95 E-value=0.033 Score=39.09 Aligned_cols=65 Identities=29% Similarity=0.386 Sum_probs=16.3
Q ss_pred HhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5576 57 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121 (156)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 121 (156)
...+..+...+..+...+......+..+..++..+...+..+...+......+..+.+++..++-
T Consensus 94 ~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l 158 (194)
T PF08614_consen 94 AQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL 158 (194)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333
No 48
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.90 E-value=0.11 Score=38.89 Aligned_cols=85 Identities=24% Similarity=0.300 Sum_probs=37.6
Q ss_pred hHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576 59 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 138 (156)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~ 138 (156)
++..+..++..-..+......++..+..++..+....+..-.+...+...+.........+..++.+++.+..+...-+.
T Consensus 214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~ 293 (306)
T PF04849_consen 214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLH 293 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444444444444444444444444444444444444555555555555555444444
Q ss_pred hhhHh
Q psy5576 139 GLKSE 143 (156)
Q Consensus 139 ~l~~~ 143 (156)
..+.+
T Consensus 294 EaQEE 298 (306)
T PF04849_consen 294 EAQEE 298 (306)
T ss_pred HHHHH
Confidence 44443
No 49
>KOG0964|consensus
Probab=96.85 E-value=0.16 Score=43.53 Aligned_cols=88 Identities=22% Similarity=0.336 Sum_probs=38.9
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 88 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 88 (156)
+++.+...++..+.......-..-.++..++.........+..++..+...+..+..+.+++..+....-.....++-++
T Consensus 230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~ 309 (1200)
T KOG0964|consen 230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKI 309 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34444444444444444444444444444444444444444444444444444444444444444333333333344444
Q ss_pred HHHHHHHH
Q psy5576 89 HGLKSELH 96 (156)
Q Consensus 89 ~~l~~~~~ 96 (156)
.++..++.
T Consensus 310 kdlq~~i~ 317 (1200)
T KOG0964|consen 310 KDLQDQIT 317 (1200)
T ss_pred HHHHHHhh
Confidence 44444443
No 50
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.81 E-value=0.34 Score=43.21 Aligned_cols=73 Identities=23% Similarity=0.383 Sum_probs=42.4
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHH
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 77 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 77 (156)
.++..++..+...+.........++..+......+......+......+......+..+......++.++...
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 675 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEA 675 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666555555555555555555555555555555444433
No 51
>KOG0995|consensus
Probab=96.74 E-value=0.22 Score=40.13 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=19.1
Q ss_pred hhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHH
Q psy5576 44 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 92 (156)
Q Consensus 44 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~ 92 (156)
..+...+.-+..+......+...+..+..++.....+++.+..+.+++.
T Consensus 273 ~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 273 DDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444444444444444333
No 52
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.70 E-value=0.31 Score=41.21 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=8.0
Q ss_pred hHhhHHHHHHhhhHhhhh
Q psy5576 129 ELHGLKSELHGLKSELGL 146 (156)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~ 146 (156)
++......+..++..|..
T Consensus 734 EiaaAA~KLAECQeTI~s 751 (769)
T PF05911_consen 734 EIAAAAEKLAECQETIAS 751 (769)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 53
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.69 E-value=0.12 Score=36.32 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=16.0
Q ss_pred HhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHH
Q psy5576 57 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95 (156)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~ 95 (156)
..++..+...+.............+...+.++..+...+
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l 105 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDEL 105 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443333333
No 54
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.66 E-value=0.17 Score=37.86 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=15.5
Q ss_pred HHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH
Q psy5576 46 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 86 (156)
Q Consensus 46 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+.....++..+..++..-..+..+...++.++..++-.++.
T Consensus 208 L~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~ 248 (306)
T PF04849_consen 208 LSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQ 248 (306)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334333333333333333333333333333333
No 55
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.61 E-value=0.14 Score=36.03 Aligned_cols=96 Identities=30% Similarity=0.409 Sum_probs=58.5
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 88 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 88 (156)
.+|.-|+.++.+....+..--..+-.++..+......+......+..+...+..-..++.....++.+...+..-+...+
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl 89 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKL 89 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhh
Confidence 45666666666666666666666666666666666666666666666666555555566666666665555555555555
Q ss_pred HHHHHHHHhHHHHHHH
Q psy5576 89 HGLKSELHGLKSELHG 104 (156)
Q Consensus 89 ~~l~~~~~~~~~~~~~ 104 (156)
..+..++..+......
T Consensus 90 ~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 90 GQLEAELAELREELAC 105 (202)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 5555555544444444
No 56
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.17 Score=37.09 Aligned_cols=14 Identities=14% Similarity=0.551 Sum_probs=4.9
Q ss_pred HHhHHHHHHHHHHh
Q psy5576 11 LDGLKSELHGLKSE 24 (156)
Q Consensus 11 i~~l~~~l~~~~~~ 24 (156)
|+.|-.++.++..+
T Consensus 54 i~~L~~qi~~~~~k 67 (265)
T COG3883 54 IESLDNQIEEIQSK 67 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 57
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=96.58 E-value=0.0051 Score=46.17 Aligned_cols=126 Identities=29% Similarity=0.443 Sum_probs=23.1
Q ss_pred HHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHh
Q psy5576 18 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 97 (156)
Q Consensus 18 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~ 97 (156)
+..+.+.+..++.....+...+..+...+.++...+..+...+......+..+...+..+...+..+...+..+...+..
T Consensus 30 Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~ 109 (326)
T PF04582_consen 30 LSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSD 109 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhh
Confidence 33334444444444444444444444444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHh
Q psy5576 98 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 143 (156)
Q Consensus 98 ~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~ 143 (156)
....+..+...+..+.-.+..++..+..+.-.+.++...+..++..
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 5555555555566666666666666666666666666666665554
No 58
>KOG0963|consensus
Probab=96.57 E-value=0.32 Score=39.67 Aligned_cols=47 Identities=30% Similarity=0.424 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHh
Q psy5576 105 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTY 152 (156)
Q Consensus 105 l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (156)
....+..|+.+.......++++...+... ...+.+..+..+|+.|-+
T Consensus 315 ~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ief 361 (629)
T KOG0963|consen 315 HKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKAIEF 361 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHhhc
Confidence 33344455555555555555555544443 456667777777777643
No 59
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=96.54 E-value=0.0059 Score=45.84 Aligned_cols=122 Identities=30% Similarity=0.453 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHH
Q psy5576 14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 93 (156)
Q Consensus 14 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~ 93 (156)
+...+..++..+..+...+..+...+..+...+..+...+.+....+..+...+..+...+..+...+..+..-+.....
T Consensus 33 I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~s 112 (326)
T PF04582_consen 33 IRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSS 112 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhh
Confidence 33444444444444444444444444444444444444555555555555555555555555555555555555555555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHH
Q psy5576 94 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 135 (156)
Q Consensus 94 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~ 135 (156)
.+..++..+..+...+..|+..+....-.|..++.++..++.
T Consensus 113 sIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 113 SISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 555555555555555555666666666666666665555553
No 60
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.53 E-value=0.35 Score=39.76 Aligned_cols=53 Identities=34% Similarity=0.503 Sum_probs=27.4
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhh
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 59 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 59 (156)
-..++..+..+++.+...+..+...+..+...+..+...+.........+..+
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~ 378 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEE 378 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555544444444444333
No 61
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.49 E-value=0.27 Score=37.94 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=17.7
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhh
Q psy5576 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 53 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 53 (156)
++++..++..+..++..........+.+-.....++...+.+.
T Consensus 76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~ 118 (499)
T COG4372 76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQER 118 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333333333333333
No 62
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.48 E-value=0.39 Score=39.71 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=12.9
Q ss_pred HHHhhHHhHHHHHHHHHHhHHhHH
Q psy5576 6 KRKSELDGLKSELHGLKSELHGLK 29 (156)
Q Consensus 6 ~~~~ei~~l~~~l~~~~~~~~~~~ 29 (156)
.+..++..|..++..+..++....
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv 107 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQV 107 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556665555555554443
No 63
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.46 E-value=0.44 Score=39.97 Aligned_cols=78 Identities=23% Similarity=0.286 Sum_probs=44.0
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHh
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 80 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (156)
+.+.|...|.+|..++..+...+.....+.+.+......+......+..+...+..++..+...-.++-.+...+..+
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeE 105 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEE 105 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345566666666666666666666666666666655555555555555555555555555555444444444444443
No 64
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.41 E-value=0.24 Score=36.37 Aligned_cols=33 Identities=33% Similarity=0.465 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576 106 KSELHGLKSELHGLKSELHGLKSELHGLKSELH 138 (156)
Q Consensus 106 ~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~ 138 (156)
+..+.-++.++......|+.+..++..+..+++
T Consensus 94 e~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 94 ESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444443333
No 65
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.39 E-value=0.34 Score=37.93 Aligned_cols=71 Identities=18% Similarity=0.367 Sum_probs=41.2
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhH
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 74 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (156)
.+....+|..++..+.........++..+..++.++..+..++..+...+..+...+..+...+..+..+.
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666555555555555555555555555555554444
No 66
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.32 E-value=0.29 Score=36.45 Aligned_cols=46 Identities=17% Similarity=0.388 Sum_probs=19.4
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhH
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 49 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 49 (156)
|+.++..+..+...+..+...-..+...+..++.....+...+..+
T Consensus 43 Rdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 43 RDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443333333
No 67
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.30 E-value=0.55 Score=39.44 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=11.3
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELH 33 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~ 33 (156)
++.+|..++.+.+.++.++..+.....
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq 484 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQ 484 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333
No 68
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.18 E-value=0.67 Score=39.29 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=9.0
Q ss_pred hHHHhHhhHHHHHHhhhHhhhhh
Q psy5576 125 GLKSELHGLKSELHGLKSELGLN 147 (156)
Q Consensus 125 ~l~~~~~~~~~~~~~l~~~~~~~ 147 (156)
.-..++.+....|..|..+.-.|
T Consensus 737 aAA~KLAECQeTI~sLGkQLksL 759 (769)
T PF05911_consen 737 AAAEKLAECQETIASLGKQLKSL 759 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333444444444444433333
No 69
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.18 E-value=0.27 Score=34.76 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=17.4
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhh
Q psy5576 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 54 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 54 (156)
|..|+.++..+..........+..+..+-..+.+-+..+.....
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~ 72 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVE 72 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444444444444444433333333333333333333
No 70
>KOG0971|consensus
Probab=96.16 E-value=0.73 Score=39.47 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=22.3
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHH
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHG 34 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~ 34 (156)
|=+.|..+++.+...++++...+..++.++..
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777777777777777666543
No 71
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.13 E-value=0.32 Score=35.15 Aligned_cols=72 Identities=22% Similarity=0.317 Sum_probs=33.6
Q ss_pred HhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5576 51 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122 (156)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 122 (156)
.-+.+...+...+..+......++..+..++..++..+.+...+.......+..+..++..|..+++.+..+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555444444444444444444444444444444444444444444444333
No 72
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.11 E-value=0.3 Score=34.58 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=18.5
Q ss_pred HHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHH
Q psy5576 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 47 (156)
Q Consensus 6 ~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 47 (156)
+++.+|..+..........+..+..+-..+..-+..+.....
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~ 72 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVE 72 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345555555554444444444444443333333333333333
No 73
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.11 E-value=0.0015 Score=55.60 Aligned_cols=101 Identities=27% Similarity=0.374 Sum_probs=0.0
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHh
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 83 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (156)
|..+..+++.+...++.+.......+.....+...+..+...+......+.++......+..++..+...+......+..
T Consensus 154 k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~ 233 (859)
T PF01576_consen 154 KSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQ 233 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666555555555555556655555555555555555555555555555555555555554444
Q ss_pred hHHHHHHHHHHHHhHHHHHHH
Q psy5576 84 LKSELHGLKSELHGLKSELHG 104 (156)
Q Consensus 84 ~~~e~~~l~~~~~~~~~~~~~ 104 (156)
+......+...+.++...+..
T Consensus 234 l~r~k~~L~~qLeelk~~lee 254 (859)
T PF01576_consen 234 LQREKSSLESQLEELKRQLEE 254 (859)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHh
Confidence 444444444444444333333
No 74
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.08 E-value=0.3 Score=34.36 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=6.6
Q ss_pred HhHhhHHHHHHhhhHhh
Q psy5576 128 SELHGLKSELHGLKSEL 144 (156)
Q Consensus 128 ~~~~~~~~~~~~l~~~~ 144 (156)
.....+...+..+..++
T Consensus 164 kK~~~~~~~~~~l~~ei 180 (194)
T PF15619_consen 164 KKHKEAQEEVKSLQEEI 180 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444333
No 75
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.01 E-value=0.71 Score=38.07 Aligned_cols=49 Identities=37% Similarity=0.507 Sum_probs=27.3
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 53 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 53 (156)
.+++.+++.+..++..+...+..+...+.++..+..........+...+
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666665555555555555544444444333
No 76
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.00 E-value=1.1 Score=40.13 Aligned_cols=69 Identities=25% Similarity=0.404 Sum_probs=31.4
Q ss_pred HhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHh
Q psy5576 12 DGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 80 (156)
Q Consensus 12 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (156)
+.|..+++.+...+..+......+...+......+......+......+......+..+......+..+
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 671 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQE 671 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444444444443
No 77
>KOG0976|consensus
Probab=95.96 E-value=0.86 Score=38.61 Aligned_cols=68 Identities=24% Similarity=0.383 Sum_probs=35.4
Q ss_pred HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHH
Q psy5576 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 75 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 75 (156)
++....++.++..++.++..++.....+..+...++..+...+.++.+.+.++..+.+++..+..++.
T Consensus 91 Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLs 158 (1265)
T KOG0976|consen 91 RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELS 158 (1265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 34445555555556666666655555555555555555555555554444444444444444444433
No 78
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.92 E-value=0.26 Score=32.38 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=22.1
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHH
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 47 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 47 (156)
.++..++..+...+......+..+...+......+......+.
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE 48 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE 48 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555444444443
No 79
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=95.84 E-value=0.48 Score=34.93 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=35.6
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 84 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
|.+|+..+.+-...++.-+.++..++.++...++.+-.-+.-..+.+..+...+.+|++++.-++..+..+..-
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 44555555555555555555555555555544444433333333334444455555555555554444444433
No 80
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.78 E-value=0.59 Score=35.37 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=13.0
Q ss_pred HHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhh
Q psy5576 109 LHGLKSELHGLKSELHGLKSELHGLKSELHGLK 141 (156)
Q Consensus 109 l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~ 141 (156)
++.+..++..++..+..+-.+..++..+.+.+.
T Consensus 135 LEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk 167 (319)
T PF09789_consen 135 LEKLREQIEQLERDLQSLLDEKEELVTERDAYK 167 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444333333333333333333
No 81
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.77 E-value=0.6 Score=35.35 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=9.9
Q ss_pred hHHHHhhHHhHHHHHHHHHHhH
Q psy5576 4 KEKRKSELDGLKSELHGLKSEL 25 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~ 25 (156)
|+.|+.-.+.+......++...
T Consensus 25 rDqyKlMAEqLqer~q~LKkk~ 46 (319)
T PF09789_consen 25 RDQYKLMAEQLQERYQALKKKY 46 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 82
>KOG0995|consensus
Probab=95.76 E-value=0.84 Score=36.98 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=9.0
Q ss_pred HHHhhhhhHhhHHhHHHhHHhhHH
Q psy5576 49 LKSELHGLKSELHGLKSELHGLKS 72 (156)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~~~~~~ 72 (156)
++..+..++.++..+..-..+++.
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~ 287 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKS 287 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh
Confidence 333333333333333333333333
No 83
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.74 E-value=0.78 Score=36.43 Aligned_cols=62 Identities=24% Similarity=0.376 Sum_probs=29.5
Q ss_pred HHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHH
Q psy5576 34 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95 (156)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~ 95 (156)
.++..+..+.............++......-..+.++..++.....++..+...++++...+
T Consensus 299 ~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 299 TLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333333444444444444444444444444455555555555555555555555555444
No 84
>KOG0971|consensus
Probab=95.69 E-value=1.2 Score=38.25 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576 97 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 134 (156)
Q Consensus 97 ~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~ 134 (156)
++..++..+...+..+..+++.....+-+...-+..++
T Consensus 494 DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfR 531 (1243)
T KOG0971|consen 494 DLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFR 531 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 85
>KOG0999|consensus
Probab=95.63 E-value=0.95 Score=36.69 Aligned_cols=81 Identities=26% Similarity=0.309 Sum_probs=42.9
Q ss_pred HHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHh
Q psy5576 18 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 97 (156)
Q Consensus 18 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~ 97 (156)
|-+++..+..+...+...+.+.+.+.....+....-...+.+..+++.++..++-.-.++-.++..++.+.-.+...++.
T Consensus 109 I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~ 188 (772)
T KOG0999|consen 109 ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSN 188 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 44444444444444444444444444444444444555555566666666666666666666666666555555544443
Q ss_pred H
Q psy5576 98 L 98 (156)
Q Consensus 98 ~ 98 (156)
+
T Consensus 189 L 189 (772)
T KOG0999|consen 189 L 189 (772)
T ss_pred H
Confidence 3
No 86
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.52 E-value=0.62 Score=33.80 Aligned_cols=91 Identities=22% Similarity=0.376 Sum_probs=47.9
Q ss_pred HHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHh------------HHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHh
Q psy5576 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSE------------LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 73 (156)
Q Consensus 6 ~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 73 (156)
.++...+.+...+...+..+..+...+..+... +..+...+......+......+......+..+...
T Consensus 35 ~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~ 114 (240)
T PF12795_consen 35 KQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTR 114 (240)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345555666666666666666666666666443 34444445545555555555555555555544444
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHH
Q psy5576 74 LHGLKSELHGLKSELHGLKSELH 96 (156)
Q Consensus 74 ~~~~~~~~~~~~~e~~~l~~~~~ 96 (156)
.......+......+.++...+.
T Consensus 115 p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 115 PERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444443
No 87
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.50 E-value=0.0036 Score=53.28 Aligned_cols=66 Identities=24% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 70 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 70 (156)
..|..+++++...++........+..+...+...+..+......+...+.....+...+..++..+
T Consensus 352 ~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~L 417 (859)
T PF01576_consen 352 KRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKL 417 (859)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345556666666665555555555555444444444444444433333333333333333333333
No 88
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.47 E-value=1 Score=36.11 Aligned_cols=9 Identities=11% Similarity=0.338 Sum_probs=3.3
Q ss_pred HHhHHHHHH
Q psy5576 11 LDGLKSELH 19 (156)
Q Consensus 11 i~~l~~~l~ 19 (156)
+..++.++.
T Consensus 170 l~~~~~~L~ 178 (498)
T TIGR03007 170 IKTYEKKLE 178 (498)
T ss_pred HHHHHHHHH
Confidence 333333333
No 89
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.44 E-value=1.2 Score=36.54 Aligned_cols=74 Identities=18% Similarity=0.368 Sum_probs=35.3
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 71 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 71 ~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
..++..+......+...+..-....+.+...+..+...+..+..+...+...+..+...-...+..+..+...+
T Consensus 350 ~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 350 EKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKL 423 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444555555555555555555555555555555554444444444444433
No 90
>KOG4673|consensus
Probab=95.33 E-value=1.4 Score=36.71 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=12.0
Q ss_pred chhHHHHhhHHhHHHHHH
Q psy5576 2 RRKEKRKSELDGLKSELH 19 (156)
Q Consensus 2 ~~~~~~~~ei~~l~~~l~ 19 (156)
+.|++++.++..++.+++
T Consensus 423 kERDalr~e~kslk~ela 440 (961)
T KOG4673|consen 423 KERDALRREQKSLKKELA 440 (961)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 357777777777666543
No 91
>KOG0018|consensus
Probab=95.21 E-value=1 Score=39.11 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=29.2
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHH
Q psy5576 71 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 128 (156)
Q Consensus 71 ~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~ 128 (156)
+.........+......+.............+..++.++..+......+..+|.....
T Consensus 295 ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q 352 (1141)
T KOG0018|consen 295 KENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ 352 (1141)
T ss_pred chhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444455555555555555555555555555555555555555555544433
No 92
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.19 E-value=1.1 Score=34.72 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=8.1
Q ss_pred hHHhHHHHHHHHHHhHHhHHH
Q psy5576 10 ELDGLKSELHGLKSELHGLKS 30 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~~~ 30 (156)
.|..+..++..........+.
T Consensus 82 qlr~~rtel~~a~~~k~~~e~ 102 (499)
T COG4372 82 QLRALRTELGTAQGEKRAAET 102 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 93
>KOG0978|consensus
Probab=95.19 E-value=1.6 Score=36.53 Aligned_cols=59 Identities=27% Similarity=0.275 Sum_probs=22.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhh
Q psy5576 88 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL 146 (156)
Q Consensus 88 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~ 146 (156)
+........+.......+..++....+.+.++...+.+....+..+......++.++..
T Consensus 554 le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~ 612 (698)
T KOG0978|consen 554 LEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELER 612 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444444444444333333333333333333333
No 94
>KOG0804|consensus
Probab=95.19 E-value=1.2 Score=35.11 Aligned_cols=99 Identities=22% Similarity=0.260 Sum_probs=46.1
Q ss_pred HHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5576 31 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 110 (156)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~ 110 (156)
++...+..+.........+......+.......+..+.++...+.....++......-..+..........+.++++
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e--- 424 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEE--- 424 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 44444444444444444445555555555555555555555555555555555554444444433333333333222
Q ss_pred HHHHHHHhHHHhHHhHHHhHhh
Q psy5576 111 GLKSELHGLKSELHGLKSELHG 132 (156)
Q Consensus 111 ~l~~~~~~~~~~i~~l~~~~~~ 132 (156)
.........+..|.++++++.+
T Consensus 425 ~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 425 REKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 2333333444444444444443
No 95
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.19 E-value=0.72 Score=32.54 Aligned_cols=91 Identities=30% Similarity=0.398 Sum_probs=52.6
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 86 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|+..+.+...++...-..+-.+...+...+..+......+..+...+..-..++.....++.+...+...+...+..++.
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~ 94 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEA 94 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHH
Confidence 45566666666666666666666666666666666666666565555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHh
Q psy5576 87 ELHGLKSELHG 97 (156)
Q Consensus 87 e~~~l~~~~~~ 97 (156)
++..+......
T Consensus 95 El~~Lr~~l~~ 105 (202)
T PF06818_consen 95 ELAELREELAC 105 (202)
T ss_pred HHHHHHHHHHh
Confidence 55555544444
No 96
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.15 E-value=0.77 Score=32.64 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHH
Q psy5576 102 LHGLKSELHGLKSELHGLKSELH 124 (156)
Q Consensus 102 ~~~l~~~l~~l~~~~~~~~~~i~ 124 (156)
...+..++..+..+...++.++.
T Consensus 141 n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 141 NQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444443333333
No 97
>KOG1003|consensus
Probab=95.01 E-value=0.79 Score=32.06 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=21.7
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKS 44 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (156)
.++++.|.-+..+++..+..+..+..++..+.+..++...
T Consensus 7 a~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er 46 (205)
T KOG1003|consen 7 AALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESER 46 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 3455566666666666555555555555555544443333
No 98
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.99 E-value=0.57 Score=30.32 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=11.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH
Q psy5576 88 LHGLKSELHGLKSELHGLKSELHGLKSELHGL 119 (156)
Q Consensus 88 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 119 (156)
+..+......+-.-+.+.......|...+..+
T Consensus 77 l~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 77 LEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 99
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.84 E-value=1.7 Score=34.96 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=13.7
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHH
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLK 36 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~ 36 (156)
.-.+-+..++..+..++...+..+...+
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555544443
No 100
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.78 E-value=0.87 Score=31.41 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=8.9
Q ss_pred HHhHHHHHHHHHHhHHhHHH
Q psy5576 11 LDGLKSELHGLKSELHGLKS 30 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~ 30 (156)
.-.+...+..+..++...+.
T Consensus 15 ~~~lk~~l~k~~~ql~~ke~ 34 (177)
T PF13870_consen 15 NITLKHQLAKLEEQLRQKEE 34 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 101
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.67 E-value=0.93 Score=31.26 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=17.6
Q ss_pred HhhHHhHHHHHHHHHHhHHhHHHHHHHHHH
Q psy5576 8 KSELDGLKSELHGLKSELHGLKSELHGLKS 37 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~ 37 (156)
.++++.+.-....+...+..+...+.....
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~ 34 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEE 34 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666555544
No 102
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=94.66 E-value=1.4 Score=33.23 Aligned_cols=89 Identities=25% Similarity=0.275 Sum_probs=56.7
Q ss_pred hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHH
Q psy5576 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 89 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 89 (156)
.+.+++..+.+++.++....-.-.++..+-..+..++.-++..+.++...+..+..++.....+++..+..+..+..++.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666766666666666666666666666666666666666666666666666555666666666666666666
Q ss_pred HHHHHHHhH
Q psy5576 90 GLKSELHGL 98 (156)
Q Consensus 90 ~l~~~~~~~ 98 (156)
.+...+...
T Consensus 158 ~Lre~L~~r 166 (302)
T PF09738_consen 158 ELREQLKQR 166 (302)
T ss_pred HHHHHHHHH
Confidence 666555443
No 103
>KOG0979|consensus
Probab=94.62 E-value=2.8 Score=36.47 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=14.9
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhH
Q psy5576 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 46 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 46 (156)
+.+++.....+...+......+..++.+.+.+...+
T Consensus 183 L~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdV 218 (1072)
T KOG0979|consen 183 LMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDV 218 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443333
No 104
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.54 E-value=0.53 Score=27.86 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=24.8
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHH
Q psy5576 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 136 (156)
Q Consensus 81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~ 136 (156)
+.-++.+++++......+..+...+......|..+...++.+-..+..++..+-..
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444434444444444444444444444455545555554444433
No 105
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=94.51 E-value=0.97 Score=30.76 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=9.5
Q ss_pred hHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 118 GLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 118 ~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
.+..-++-+...+.++...++.+
T Consensus 130 qi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 130 QIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333444444444444444433
No 106
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=1.6 Score=35.83 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=13.5
Q ss_pred HHHhHHhHHHhHhhHHHHHHhhhHhhhhhhh
Q psy5576 119 LKSELHGLKSELHGLKSELHGLKSELGLNCY 149 (156)
Q Consensus 119 ~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~ 149 (156)
.+..|..|...+......++.|...+.-+.+
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 107
>KOG0999|consensus
Probab=94.49 E-value=2.2 Score=34.73 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=15.2
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHH
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGL 35 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~ 35 (156)
|..++...++|...++.....+...+..+.+.
T Consensus 45 K~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~ 76 (772)
T KOG0999|consen 45 KEDLKQQLEELEAEYDLARTELDQTKEALGQY 76 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544444444444433
No 108
>KOG0946|consensus
Probab=94.46 E-value=1.7 Score=36.86 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=13.5
Q ss_pred hhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHH
Q psy5576 58 SELHGLKSELHGLKSELHGLKSELHGLKSELHGL 91 (156)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 91 (156)
.+...+..++..+..++....+.+..+...+..+
T Consensus 848 ~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl 881 (970)
T KOG0946|consen 848 NELKLIEQKLSNLQEKIKFGNNLIKELTEKISSL 881 (970)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Confidence 3333334444444444444444444444333333
No 109
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.39 E-value=1.1 Score=32.13 Aligned_cols=73 Identities=30% Similarity=0.386 Sum_probs=30.6
Q ss_pred hhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHH
Q psy5576 55 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127 (156)
Q Consensus 55 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~ 127 (156)
+++..+..+...++....+...+..++..++.+.+.....++.+..+.+.++..+..+-.+...+...++++.
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 3333333444444444444444444444444444444444444444444444444444444444444433333
No 110
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=94.39 E-value=1.4 Score=32.17 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHH
Q psy5576 101 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 135 (156)
Q Consensus 101 ~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~ 135 (156)
.+..+...+..|.........+...|..++.....
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444443333
No 111
>KOG0239|consensus
Probab=94.29 E-value=2.8 Score=35.19 Aligned_cols=98 Identities=27% Similarity=0.389 Sum_probs=49.5
Q ss_pred hHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHH---HhHhh
Q psy5576 56 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK---SELHG 132 (156)
Q Consensus 56 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~---~~~~~ 132 (156)
.......+.......+.++..+...+..+......+......+.......-..+..+...+......+.+.. .....
T Consensus 225 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~k 304 (670)
T KOG0239|consen 225 LRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRK 304 (670)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555555555555555555544444444444343333333333333333 55556
Q ss_pred HHHHHHhhhHhhhhhhhhHhh
Q psy5576 133 LKSELHGLKSELGLNCYLTYF 153 (156)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~ 153 (156)
+...+..+...+.+-|.+--|
T Consensus 305 L~N~i~eLkGnIRV~CRvRP~ 325 (670)
T KOG0239|consen 305 LHNEILELKGNIRVFCRVRPL 325 (670)
T ss_pred HHHHHHHhhcCceEEEEecCC
Confidence 666677777777777765443
No 112
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=94.22 E-value=0.62 Score=35.71 Aligned_cols=74 Identities=23% Similarity=0.351 Sum_probs=32.0
Q ss_pred HHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 67 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
+......+..+...+..+..+.+....+...++..+.....++.....=+..+..+...+...+..+......+
T Consensus 237 L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 237 LAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhccc
Confidence 33333333333333333333333333333333344444444444444444555555555555555555544443
No 113
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.12 E-value=3.2 Score=35.24 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=8.0
Q ss_pred HhhHHhHHHHHHHHHHhHH
Q psy5576 8 KSELDGLKSELHGLKSELH 26 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~ 26 (156)
..++..++.++...+.++.
T Consensus 200 ~~ql~~l~~~l~~aE~~l~ 218 (754)
T TIGR01005 200 APEIADLSKQSRDAEAEVA 218 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 114
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.00 E-value=2 Score=32.49 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=21.6
Q ss_pred hhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy5576 55 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 108 (156)
Q Consensus 55 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~ 108 (156)
.+..++..+...+..+...+.....-+..+..+++.+...+..++.+...+..+
T Consensus 213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k 266 (309)
T PF09728_consen 213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSK 266 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444443334444444444444444444333333333333
No 115
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.88 E-value=0.68 Score=26.65 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=29.4
Q ss_pred HhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHH
Q psy5576 79 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 136 (156)
Q Consensus 79 ~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~ 136 (156)
.-+.-++.+++++......+..+...+....+.|..+-..++.+-..+..++..+-..
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444445444444445555555555555555555555555555555544433
No 116
>KOG4360|consensus
Probab=93.87 E-value=2.8 Score=33.71 Aligned_cols=62 Identities=24% Similarity=0.271 Sum_probs=26.9
Q ss_pred HHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5576 49 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 110 (156)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~ 110 (156)
.-.++.+.......+...++....+..+...+...+..++.++...+..+.-+...+-.-+.
T Consensus 203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq 264 (596)
T KOG4360|consen 203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQ 264 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444333333
No 117
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=93.83 E-value=0.27 Score=38.13 Aligned_cols=41 Identities=15% Similarity=0.410 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhh
Q psy5576 101 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 141 (156)
Q Consensus 101 ~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~ 141 (156)
.+..++..+..++..+..+...+..+...+..+...+.++.
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444433
No 118
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=93.70 E-value=1.6 Score=30.20 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhhc
Q psy5576 104 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLF 155 (156)
Q Consensus 104 ~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 155 (156)
........++.++.+++..|. ..+..++..++.. ++++++|++.++|
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~---~ei~~lr~~iE~~--K~~~lr~~~g~i~ 163 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKID---TEIANLRTEIESL--KWDTLRWLVGVIF 163 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 344444445555555544442 3344566666654 7788888776654
No 119
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.70 E-value=2.1 Score=31.70 Aligned_cols=21 Identities=43% Similarity=0.483 Sum_probs=8.7
Q ss_pred HHhHHHHHHHHHHhHHhHHHH
Q psy5576 11 LDGLKSELHGLKSELHGLKSE 31 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~ 31 (156)
+-.+...+..+......+...
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~ 42 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRR 42 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333
No 120
>PRK11281 hypothetical protein; Provisional
Probab=93.70 E-value=4.9 Score=35.84 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=9.2
Q ss_pred hHHhHHHHHHHHHHhHHhHHHHHH
Q psy5576 10 ELDGLKSELHGLKSELHGLKSELH 33 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~~~~~~ 33 (156)
+.+.+.+.+......+......+.
T Consensus 81 ~~~~L~k~l~~Ap~~l~~a~~~Le 104 (1113)
T PRK11281 81 ETEQLKQQLAQAPAKLRQAQAELE 104 (1113)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333333334443333333333333
No 121
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=93.64 E-value=2.4 Score=32.03 Aligned_cols=86 Identities=24% Similarity=0.271 Sum_probs=41.0
Q ss_pred HHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHH
Q psy5576 49 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 128 (156)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~ 128 (156)
++..+.+++..+...-....++.++...+.-++..+...+.++...+..++.++.+....+..++..++.+..++..++.
T Consensus 82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444455444444444444444455555555555555555555
Q ss_pred hHhhHH
Q psy5576 129 ELHGLK 134 (156)
Q Consensus 129 ~~~~~~ 134 (156)
.+....
T Consensus 162 ~L~~rd 167 (302)
T PF09738_consen 162 QLKQRD 167 (302)
T ss_pred HHHHHH
Confidence 544333
No 122
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=93.53 E-value=1.6 Score=29.72 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=19.9
Q ss_pred HHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHh
Q psy5576 34 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 80 (156)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (156)
..+.++..+..++..++..+.....+.+.+..........+......
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~ 70 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRN 70 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444444444444444444444444333
No 123
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.51 E-value=2.8 Score=32.46 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=9.0
Q ss_pred HHHHHHHhHHhHHhhHHhHHHhhh
Q psy5576 31 ELHGLKSELHGLKSELHGLKSELH 54 (156)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~~~~~~~ 54 (156)
.+.++..-...+...+..++..+.
T Consensus 221 hleqm~~~~~~I~~~~~~~~~~L~ 244 (359)
T PF10498_consen 221 HLEQMKQHKKSIESALPETKSQLD 244 (359)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHH
Confidence 333333333333333333333333
No 124
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.51 E-value=2.3 Score=31.51 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=9.6
Q ss_pred HHHHHHhHHhHHHHHHHHHHhHH
Q psy5576 18 LHGLKSELHGLKSELHGLKSELH 40 (156)
Q Consensus 18 l~~~~~~~~~~~~~~~~~~~~~~ 40 (156)
+..+...+..+......+...+.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 125
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.31 E-value=2.1 Score=30.46 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=5.7
Q ss_pred HHHHHHhHHHhHHhHH
Q psy5576 112 LKSELHGLKSELHGLK 127 (156)
Q Consensus 112 l~~~~~~~~~~i~~l~ 127 (156)
|.+.+...+-.+..+.
T Consensus 166 Lqa~lkk~e~~~~SLe 181 (207)
T PF05010_consen 166 LQASLKKEEMKVQSLE 181 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 126
>KOG0994|consensus
Probab=93.15 E-value=6 Score=35.29 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576 103 HGLKSELHGLKSELHGLKSELHGLKSELHGLK 134 (156)
Q Consensus 103 ~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~ 134 (156)
.+|+.....-+..+.....++..+..++..+.
T Consensus 1713 ~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1713 KDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 33333333333333344444444444444333
No 127
>PRK11281 hypothetical protein; Provisional
Probab=93.13 E-value=6.1 Score=35.26 Aligned_cols=9 Identities=22% Similarity=0.265 Sum_probs=3.2
Q ss_pred HhhHHhHHH
Q psy5576 8 KSELDGLKS 16 (156)
Q Consensus 8 ~~ei~~l~~ 16 (156)
+..+...-.
T Consensus 86 ~k~l~~Ap~ 94 (1113)
T PRK11281 86 KQQLAQAPA 94 (1113)
T ss_pred HHHHHHhHH
Confidence 333333333
No 128
>KOG0962|consensus
Probab=92.94 E-value=6.7 Score=35.27 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=11.6
Q ss_pred hHHhHHHhHHhhHHhHHHHHHhHH
Q psy5576 59 ELHGLKSELHGLKSELHGLKSELH 82 (156)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~ 82 (156)
++..+..+...+..++..+...+.
T Consensus 269 ~~~~l~~e~~~l~~~~~~l~~~i~ 292 (1294)
T KOG0962|consen 269 QVKLLDSEHKNLKKQISRLREKIL 292 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444555555555555544433
No 129
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.92 E-value=2.7 Score=30.68 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=19.1
Q ss_pred hHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHH
Q psy5576 48 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95 (156)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~ 95 (156)
.+...+..+..++..+......+...+.....++..+..+++.+....
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444444444444444443333
No 130
>KOG0243|consensus
Probab=92.80 E-value=6.3 Score=34.60 Aligned_cols=33 Identities=42% Similarity=0.460 Sum_probs=13.4
Q ss_pred hHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHH
Q psy5576 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSE 94 (156)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~ 94 (156)
.+..+...++..+.....++..+..++..+...
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444433
No 131
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.75 E-value=4.2 Score=32.43 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=7.9
Q ss_pred HhHHhHHHhHhhHHHHHHhh
Q psy5576 121 SELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 121 ~~i~~l~~~~~~~~~~~~~l 140 (156)
.++......+..+...+..+
T Consensus 291 ~~l~~~~~~l~~~~~~l~~a 310 (457)
T TIGR01000 291 QEITDLNQKLLELESKIKSL 310 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444333333
No 132
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=92.73 E-value=1.5 Score=27.16 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=13.7
Q ss_pred hhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHH
Q psy5576 58 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 94 (156)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~ 94 (156)
.++..++..+.++..++......+-......+.+..+
T Consensus 24 ~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e 60 (96)
T PF08647_consen 24 KELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNE 60 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333333333333333333333333333333333333
No 133
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.73 E-value=3.2 Score=31.05 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=12.1
Q ss_pred HhHHHHHHHHHHhHHhHHHHHHHHHHhHH
Q psy5576 12 DGLKSELHGLKSELHGLKSELHGLKSELH 40 (156)
Q Consensus 12 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 40 (156)
+-|..++......+..++.++...+..+.
T Consensus 147 e~LsQqLskaesK~nsLe~elh~trdaLr 175 (305)
T PF14915_consen 147 EILSQQLSKAESKFNSLEIELHHTRDALR 175 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 134
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.60 E-value=2.1 Score=28.64 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=8.1
Q ss_pred HHhHhhHHHHHHhhhHh
Q psy5576 127 KSELHGLKSELHGLKSE 143 (156)
Q Consensus 127 ~~~~~~~~~~~~~l~~~ 143 (156)
..++.....+++.+++.
T Consensus 132 ~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 132 EHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444555555443
No 135
>KOG4809|consensus
Probab=92.52 E-value=5 Score=32.67 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=6.9
Q ss_pred HHHHhHHHhHHhHHHhH
Q psy5576 114 SELHGLKSELHGLKSEL 130 (156)
Q Consensus 114 ~~~~~~~~~i~~l~~~~ 130 (156)
..+..++.++..+...+
T Consensus 421 d~i~~le~e~~~y~de~ 437 (654)
T KOG4809|consen 421 DQIKQLEKEASYYRDEC 437 (654)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 136
>KOG0946|consensus
Probab=92.50 E-value=6.2 Score=33.73 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576 109 LHGLKSELHGLKSELHGLKSELHGLKSELH 138 (156)
Q Consensus 109 l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~ 138 (156)
+..+..++..++.++..+....+.....+.
T Consensus 808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le 837 (970)
T KOG0946|consen 808 LQELQSELTQLKEQIQTLLERTSAAADSLE 837 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 444444444444444444444444444433
No 137
>KOG0972|consensus
Probab=92.27 E-value=3.7 Score=30.72 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=34.7
Q ss_pred hHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH------HhHHHhHhhHHHHHHh
Q psy5576 66 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL------HGLKSELHGLKSELHG 139 (156)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i------~~l~~~~~~~~~~~~~ 139 (156)
++..+-.+.......+..+...........+.-...+.+...+++.++.++.+-...+ -.+++-+..+..+...
T Consensus 274 qL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~ 353 (384)
T KOG0972|consen 274 QLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQT 353 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHh
Confidence 3333333333333333444443444444444444444444444444444444433322 2344445555555555
Q ss_pred hhHhhhh
Q psy5576 140 LKSELGL 146 (156)
Q Consensus 140 l~~~~~~ 146 (156)
+.-++++
T Consensus 354 mnv~igv 360 (384)
T KOG0972|consen 354 MNVQIGV 360 (384)
T ss_pred hhhheeh
Confidence 5544443
No 138
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.27 E-value=1.3 Score=30.35 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=3.2
Q ss_pred hHHHHHHhh
Q psy5576 132 GLKSELHGL 140 (156)
Q Consensus 132 ~~~~~~~~l 140 (156)
.+......+
T Consensus 149 ~~~~~~~~~ 157 (169)
T PF07106_consen 149 KLEKEYKKW 157 (169)
T ss_pred HHHHHHHHH
Confidence 333333333
No 139
>PF13514 AAA_27: AAA domain
Probab=92.12 E-value=8.4 Score=34.41 Aligned_cols=69 Identities=30% Similarity=0.368 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH--hHHhHHHhHhhHHHHHHhhhHhhhhhhhhHh
Q psy5576 84 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS--ELHGLKSELHGLKSELHGLKSELGLNCYLTY 152 (156)
Q Consensus 84 ~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~--~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (156)
+..++..+...+..+...+..+...+..++..+..+.. .+..+..+.......+...-.+|..+.....
T Consensus 894 l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~ 964 (1111)
T PF13514_consen 894 LEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEEWAALRLAAE 964 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444432 3344555666666666666666665554443
No 140
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.03 E-value=5.3 Score=31.95 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=34.3
Q ss_pred hHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q psy5576 41 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 107 (156)
Q Consensus 41 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~ 107 (156)
.+.+.+..++..+..+......+..-...++......-..+..+..++...+.++..++..+..+..
T Consensus 292 k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~ 358 (622)
T COG5185 292 KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHK 358 (622)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3445555555666666555555555555555555444444444444444444444444444444433
No 141
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=91.71 E-value=3.4 Score=28.98 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHh
Q psy5576 100 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTY 152 (156)
Q Consensus 100 ~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (156)
..+.....-......++.+...-+..-+.++..+...+......|.-|+..+|
T Consensus 123 ~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~ 175 (188)
T PF05335_consen 123 ANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAY 175 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444555555555555566666666666666665554
No 142
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.63 E-value=5.9 Score=31.61 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=8.7
Q ss_pred HHHHHhHHHhHHhHHHhHhhHH
Q psy5576 113 KSELHGLKSELHGLKSELHGLK 134 (156)
Q Consensus 113 ~~~~~~~~~~i~~l~~~~~~~~ 134 (156)
..++......+......+....
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~ 311 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLK 311 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443333
No 143
>KOG4643|consensus
Probab=91.59 E-value=8.9 Score=33.62 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576 101 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 134 (156)
Q Consensus 101 ~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~ 134 (156)
++..+......+..++......+..+...+..+.
T Consensus 503 elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe 536 (1195)
T KOG4643|consen 503 ELSRLHALKNELKEQYKTCDIQYELLSNKLEELE 536 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 144
>KOG0994|consensus
Probab=91.56 E-value=9.9 Score=34.07 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=12.1
Q ss_pred HHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhh
Q psy5576 22 KSELHGLKSELHGLKSELHGLKSELHGLKSELH 54 (156)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 54 (156)
...++.........+..+......+..++..+.
T Consensus 1569 ~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~ 1601 (1758)
T KOG0994|consen 1569 VEALEEADVAQGEAQDAIQGADRDIRLAQQLLA 1601 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 145
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=91.40 E-value=2.3 Score=26.81 Aligned_cols=48 Identities=31% Similarity=0.559 Sum_probs=20.1
Q ss_pred HHHhHHHHHHHHHHHHHHH--HHHHHhHHHhHHhHHHhHhhHHHHHHhhh
Q psy5576 94 ELHGLKSELHGLKSELHGL--KSELHGLKSELHGLKSELHGLKSELHGLK 141 (156)
Q Consensus 94 ~~~~~~~~~~~l~~~l~~l--~~~~~~~~~~i~~l~~~~~~~~~~~~~l~ 141 (156)
.+......+..++.++..+ ...+..+...+.++..++..+...++.+.
T Consensus 43 ~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333344444444444 44444444444444444444444444443
No 146
>KOG1853|consensus
Probab=91.39 E-value=4.4 Score=29.70 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHH
Q psy5576 14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 93 (156)
Q Consensus 14 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~ 93 (156)
|..+++.++.....+......+..+...+.+.+.....+.......+..-.+....++. ++..-+..++...+.++.
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aike---ql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKE---QLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccHHHH
Confidence 44455666666666666666666666666666555554444433333333333332222 222223333333223322
Q ss_pred -------HHHhHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576 94 -------ELHGLKSELHGLKSELHGLKSELHGLKSEL 123 (156)
Q Consensus 94 -------~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i 123 (156)
-+.++.+.+...-.+..-|+.++++.+.-+
T Consensus 127 akRati~sleDfeqrLnqAIErnAfLESELdEke~ll 163 (333)
T KOG1853|consen 127 AKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLL 163 (333)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 223555555555555555665555555443
No 147
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.27 E-value=7.8 Score=32.34 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=13.9
Q ss_pred HHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhH
Q psy5576 111 GLKSELHGLKSELHGLKSELHGLKSELHGLKS 142 (156)
Q Consensus 111 ~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~ 142 (156)
.|..++..++..+..++..+.....++..+..
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~ 230 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELKSQEAQSLQE 230 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444444444444444444444444444433
No 148
>KOG4302|consensus
Probab=91.24 E-value=4.1 Score=34.02 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=21.0
Q ss_pred HHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHh
Q psy5576 114 SELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTY 152 (156)
Q Consensus 114 ~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (156)
..++++...+..+.++...--..+..+...+-.+|...-
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg 198 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLG 198 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555555555555555555555555555555555443
No 149
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=91.07 E-value=3.1 Score=27.42 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576 108 ELHGLKSELHGLKSELHGLKSELHGLK 134 (156)
Q Consensus 108 ~l~~l~~~~~~~~~~i~~l~~~~~~~~ 134 (156)
++..+...+..+...+..+...+..+.
T Consensus 102 ~~~~l~~~~~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 102 RKEELEKALEKLEEALQKLASRIAQLA 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 150
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=91.07 E-value=4.5 Score=29.21 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=16.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhH
Q psy5576 89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130 (156)
Q Consensus 89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~ 130 (156)
..+......+...+..+......|...+..+...|.+++...
T Consensus 95 ~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 95 QSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444443333
No 151
>KOG0288|consensus
Probab=90.26 E-value=7.6 Score=30.52 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=12.5
Q ss_pred HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHH
Q psy5576 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELH 40 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 40 (156)
...+.++...++...+....+..+...++.+..
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ 44 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESR 44 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333333333333333333333
No 152
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=90.21 E-value=6 Score=29.31 Aligned_cols=54 Identities=28% Similarity=0.367 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
.+.++..+...+...+.....+++..+..+..++.--.....+.+.++.++..+
T Consensus 184 ~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 184 QLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444444443344444444444444443
No 153
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=90.04 E-value=2.1 Score=23.71 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=7.0
Q ss_pred HhHHHHHHHHHHhHHhHHH
Q psy5576 12 DGLKSELHGLKSELHGLKS 30 (156)
Q Consensus 12 ~~l~~~l~~~~~~~~~~~~ 30 (156)
+.|..++..+..++..+..
T Consensus 6 d~Ls~dVq~L~~kvdqLs~ 24 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSS 24 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 154
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=90.02 E-value=7.1 Score=29.82 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=19.5
Q ss_pred HhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhH
Q psy5576 51 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 98 (156)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~ 98 (156)
...+.++.-+..+..+-..++.++..+..+..+.+.+-..+..++++.
T Consensus 127 ~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 127 GDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444444333
No 155
>KOG2264|consensus
Probab=89.77 E-value=2.6 Score=34.55 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=10.8
Q ss_pred HHhHHHhHHhhHHhHHHHHHhHHhhHHHHH
Q psy5576 60 LHGLKSELHGLKSELHGLKSELHGLKSELH 89 (156)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 89 (156)
+..+...++.++..+.+.+.++..++.+++
T Consensus 109 I~~~n~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 109 IEEINTKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 333333333333333333333333333333
No 156
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=89.60 E-value=7.5 Score=29.48 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q psy5576 97 GLKSELHGLKSELHGLKSELHG 118 (156)
Q Consensus 97 ~~~~~~~~l~~~l~~l~~~~~~ 118 (156)
.+..++..+...+..|+.+...
T Consensus 241 tfk~Emekm~Kk~kklEKE~~~ 262 (309)
T PF09728_consen 241 TFKKEMEKMSKKIKKLEKENQT 262 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 157
>PF13166 AAA_13: AAA domain
Probab=89.41 E-value=12 Score=31.54 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576 108 ELHGLKSELHGLKSELHGLKSELHGLK 134 (156)
Q Consensus 108 ~l~~l~~~~~~~~~~i~~l~~~~~~~~ 134 (156)
.+..+...+..+...+..+...+..+.
T Consensus 425 ~i~~~~~~~~~~~~~~~~~~~~i~~l~ 451 (712)
T PF13166_consen 425 EINSLEKKLKKAKEEIKKIEKEIKELE 451 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444433333
No 158
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=89.08 E-value=6.1 Score=27.72 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=61.5
Q ss_pred HHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhH
Q psy5576 19 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 98 (156)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~ 98 (156)
.....-++.++..+...+..+......+...+................+..+..-+......+.....-..+...++.+.
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK 142 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEK 142 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555666666666655555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHhHH
Q psy5576 99 KSELHGLKSELHGLKSELHGLKSELHGLK 127 (156)
Q Consensus 99 ~~~~~~l~~~l~~l~~~~~~~~~~i~~l~ 127 (156)
...+.....+...|..++.....+++..+
T Consensus 143 ~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 143 TQLLEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554443
No 159
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.89 E-value=7.6 Score=28.62 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHh
Q psy5576 103 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 143 (156)
Q Consensus 103 ~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~ 143 (156)
-.....-..+...+......|.++...+..+..++..+...
T Consensus 182 ~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 182 LQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444677777777888888888888888777777654
No 160
>KOG4603|consensus
Probab=88.64 E-value=6.1 Score=27.18 Aligned_cols=69 Identities=23% Similarity=0.417 Sum_probs=0.0
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 72 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH--GLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 72 ~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~--~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
.++..+...+..+......+....+....++..|...+. .++.++.+++.+.....+++..+..-...+
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~v 149 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHV 149 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
No 161
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=88.07 E-value=13 Score=30.30 Aligned_cols=77 Identities=21% Similarity=0.328 Sum_probs=37.8
Q ss_pred hHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhh
Q psy5576 70 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL 146 (156)
Q Consensus 70 ~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~ 146 (156)
+..++..+...+..+...+..-....+.++..+......+..++.........+..+.+.=...+..+..+...+..
T Consensus 352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~e 428 (570)
T COG4477 352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHE 428 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444455555555555555555555555555555555555555555555444433
No 162
>KOG4809|consensus
Probab=87.83 E-value=14 Score=30.28 Aligned_cols=65 Identities=28% Similarity=0.310 Sum_probs=25.4
Q ss_pred HHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHH
Q psy5576 18 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 82 (156)
Q Consensus 18 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (156)
|+......+.+...+..++.++.+....+..++.....+....-.....+..++-.+++.+.+..
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~ 397 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECS 397 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 33333344444444444444333333333333333333333333333333333333333333333
No 163
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.51 E-value=17 Score=31.00 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=14.1
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHHH
Q psy5576 11 LDGLKSELHGLKSELHGLKSELHGLKS 37 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~~~~~ 37 (156)
.+-+..++..+..++...+.++...+.
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 164
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=87.51 E-value=5.1 Score=25.04 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHH
Q psy5576 106 KSELHGLKSELHGLKSELHGLKSELHGLKSEL 137 (156)
Q Consensus 106 ~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~ 137 (156)
...+..+...+..++..+..+...+.++...+
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444443333
No 165
>KOG0963|consensus
Probab=87.50 E-value=15 Score=30.42 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=14.0
Q ss_pred HHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 111 GLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 111 ~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
....++..+..++......+..+...++..
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444444444444455554444443
No 166
>KOG1962|consensus
Probab=87.28 E-value=5.1 Score=28.66 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=14.4
Q ss_pred hhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHH
Q psy5576 54 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 92 (156)
Q Consensus 54 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~ 92 (156)
..++.++......++........+..+.+.+..+.+.+-
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 333333333333333333333333333333333333333
No 167
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=87.25 E-value=6 Score=25.54 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 99 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 99 ~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
..-+.++..+.+.++-++.-++.....+..++..+...+..+
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555554443
No 168
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=87.22 E-value=12 Score=28.76 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=25.5
Q ss_pred HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhh
Q psy5576 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 59 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 59 (156)
.++.+++.++..++++.......+++++..-.......+...+..+.++...
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~s 54 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKS 54 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555554444444444444443333333
No 169
>PRK09343 prefoldin subunit beta; Provisional
Probab=86.97 E-value=6.3 Score=25.47 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 102 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 102 ~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
+..+..+++-++..+..++.....+...+.++...+..+
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555555444444
No 170
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=86.90 E-value=17 Score=30.53 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=27.1
Q ss_pred chhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhH
Q psy5576 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 49 (156)
Q Consensus 2 ~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 49 (156)
.+|..+..+|+.|..+|..+...+...+.++..-.........++.+.
T Consensus 79 ~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~ 126 (632)
T PF14817_consen 79 RRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDS 126 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666666655555555554444444433
No 171
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=86.89 E-value=14 Score=29.52 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=13.8
Q ss_pred hhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHH
Q psy5576 44 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 79 (156)
Q Consensus 44 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (156)
..+..++..+.+...+...+..++..++...-.++.
T Consensus 397 e~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQE 432 (527)
T PF15066_consen 397 EALANTQKHLQESRNEKETLQLELKKIKANYVHLQE 432 (527)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHH
Confidence 333333333333333333333344444433333333
No 172
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=86.72 E-value=18 Score=30.48 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHhH
Q psy5576 98 LKSELHGLKSELHGLKSELHGLKSELHGL 126 (156)
Q Consensus 98 ~~~~~~~l~~~l~~l~~~~~~~~~~i~~l 126 (156)
+...+..-..++..+...++.++.++..+
T Consensus 620 LKKk~~aE~kq~~~~eikVn~L~~E~e~~ 648 (786)
T PF05483_consen 620 LKKKITAESKQSNVYEIKVNKLQEELENL 648 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444333333
No 173
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=86.70 E-value=6 Score=25.00 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHH
Q psy5576 105 LKSELHGLKSELHGLKSELHGLKSELHGLKSEL 137 (156)
Q Consensus 105 l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~ 137 (156)
+..++..++..+..++..+..+...+.++...+
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444333
No 174
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=86.67 E-value=11 Score=28.04 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=10.2
Q ss_pred HhhHHHHHHHHHHHHhHHHHHHH
Q psy5576 82 HGLKSELHGLKSELHGLKSELHG 104 (156)
Q Consensus 82 ~~~~~e~~~l~~~~~~~~~~~~~ 104 (156)
.+...+|.++.+.+..+...+.+
T Consensus 120 KEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 120 KEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhch
Confidence 33344445555444444444443
No 175
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=85.84 E-value=18 Score=29.57 Aligned_cols=55 Identities=18% Similarity=0.333 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576 84 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 138 (156)
Q Consensus 84 ~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~ 138 (156)
+..++.++.+.+......+..-....+.+...+..+...+........++...+.
T Consensus 352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~ 406 (570)
T COG4477 352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLT 406 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334444444444444444443444444444444444444444444444443333
No 176
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.59 E-value=10 Score=26.62 Aligned_cols=60 Identities=30% Similarity=0.413 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
..+...++..+..++..+..+..+...+.........+|..++.....+...+..+.-++
T Consensus 123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555556666666666666666666666555444
No 177
>KOG0998|consensus
Probab=85.56 E-value=3.5 Score=35.61 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=34.2
Q ss_pred hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHH
Q psy5576 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 89 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 89 (156)
++..+......+.........++..+..........+...+......-.-+..+...+..+...+.....++..+..+++
T Consensus 436 ~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln 515 (847)
T KOG0998|consen 436 ELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISSLEKELN 515 (847)
T ss_pred hhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHHHHHHHh
Confidence 33333333344433333333344444444444444444444444443333333333333333333333333333333333
Q ss_pred HHHHHH
Q psy5576 90 GLKSEL 95 (156)
Q Consensus 90 ~l~~~~ 95 (156)
.+..+.
T Consensus 516 ~~~qq~ 521 (847)
T KOG0998|consen 516 ELQQQL 521 (847)
T ss_pred hhHHHH
Confidence 333333
No 178
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=85.41 E-value=10 Score=26.43 Aligned_cols=34 Identities=35% Similarity=0.518 Sum_probs=15.9
Q ss_pred HHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 111 GLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 111 ~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
....++..++.++.....+...+..+.+.+..+|
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444444444444445555555544
No 179
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=85.27 E-value=7 Score=24.43 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=7.6
Q ss_pred HHHhHHHhHHhHHHhHhhHH
Q psy5576 115 ELHGLKSELHGLKSELHGLK 134 (156)
Q Consensus 115 ~~~~~~~~i~~l~~~~~~~~ 134 (156)
+...+..++..+...+..+.
T Consensus 75 e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 75 EVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 180
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=85.13 E-value=13 Score=27.32 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=11.8
Q ss_pred HhhHHhHHHHHHHHHHhHHhHHHHHHHHH
Q psy5576 8 KSELDGLKSELHGLKSELHGLKSELHGLK 36 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~ 36 (156)
+.++..+..++.+...-+..++..+..+.
T Consensus 5 q~~l~~l~~~~~~~~~L~~kLE~DL~~~~ 33 (248)
T PF08172_consen 5 QKELSELEAKLEEQKELNAKLENDLAKVQ 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444433333
No 181
>PRK02119 hypothetical protein; Provisional
Probab=85.05 E-value=5.7 Score=23.24 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=9.0
Q ss_pred HHHHHHHHHhHHHhHHhHHHhHhhH
Q psy5576 109 LHGLKSELHGLKSELHGLKSELHGL 133 (156)
Q Consensus 109 l~~l~~~~~~~~~~i~~l~~~~~~~ 133 (156)
+..|+.-+......|..+...+..+
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 182
>KOG4302|consensus
Probab=85.00 E-value=15 Score=30.82 Aligned_cols=39 Identities=31% Similarity=0.401 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhh
Q psy5576 107 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145 (156)
Q Consensus 107 ~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~ 145 (156)
.++..+...+..+..+...-...+..+...+..+-...+
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg 198 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLG 198 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455566666666666666665666666665555554443
No 183
>KOG2751|consensus
Probab=85.00 E-value=17 Score=28.74 Aligned_cols=92 Identities=23% Similarity=0.233 Sum_probs=47.9
Q ss_pred HHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHh
Q psy5576 60 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 139 (156)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~ 139 (156)
...+..+.+++..+-.++-.++..+..+-.++...+...+.....+.++-...-........+.-.....+..+...+..
T Consensus 178 ~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~ 257 (447)
T KOG2751|consen 178 EEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEY 257 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Confidence 33344444444444444444444444445555555555555555555555555555555555555555666666666666
Q ss_pred hhHhhhhhhhhH
Q psy5576 140 LKSELGLNCYLT 151 (156)
Q Consensus 140 l~~~~~~~~~~~ 151 (156)
....++.|.+.-
T Consensus 258 s~~qldkL~ktN 269 (447)
T KOG2751|consen 258 SQAQLDKLRKTN 269 (447)
T ss_pred HHHHHHHHHhhh
Confidence 666666655543
No 184
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.77 E-value=10 Score=28.02 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=32.6
Q ss_pred HHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHH
Q psy5576 33 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 91 (156)
Q Consensus 33 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 91 (156)
..+...+..-...+.++..++..+..++.+++..++....++.++..+...+-.+++.+
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344455566666666666666666666666666666555555555544
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.42 E-value=10 Score=27.99 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=5.0
Q ss_pred HHHHHHhHHHhHHh
Q psy5576 112 LKSELHGLKSELHG 125 (156)
Q Consensus 112 l~~~~~~~~~~i~~ 125 (156)
|..+++....++..
T Consensus 73 LrG~~E~~~~~l~~ 86 (263)
T PRK10803 73 LRGQIQENQYQLNQ 86 (263)
T ss_pred HhhHHHHHHHHHHH
Confidence 33333333333333
No 186
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=84.04 E-value=16 Score=27.61 Aligned_cols=11 Identities=45% Similarity=0.661 Sum_probs=4.3
Q ss_pred hhHHhHHHHHH
Q psy5576 9 SELDGLKSELH 19 (156)
Q Consensus 9 ~ei~~l~~~l~ 19 (156)
..|+++...+.
T Consensus 55 ~~ld~~~~kl~ 65 (301)
T PF06120_consen 55 DSLDELKEKLK 65 (301)
T ss_pred HhhHHHHHHHH
Confidence 33344443333
No 187
>KOG0288|consensus
Probab=84.04 E-value=19 Score=28.41 Aligned_cols=54 Identities=26% Similarity=0.296 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhH
Q psy5576 14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67 (156)
Q Consensus 14 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 67 (156)
+.+.+.++...+....+....+..+...+......+...+...+..+.++..+.
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~ 64 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEEN 64 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333333333333333333333333333
No 188
>KOG3385|consensus
Probab=83.93 E-value=5.7 Score=25.42 Aligned_cols=53 Identities=21% Similarity=0.409 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhhcC
Q psy5576 99 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLFV 156 (156)
Q Consensus 99 ~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 156 (156)
-.++..-..=+..+....+....-+...-.++..+.+. ..+.++||++.|++|
T Consensus 56 g~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-----sg~~l~~~m~~f~lV 108 (118)
T KOG3385|consen 56 GDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-----SGISLLCWMAVFSLV 108 (118)
T ss_pred ccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHH
Confidence 33444444555566666666666666666666666655 567799999888765
No 189
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=83.89 E-value=6 Score=22.52 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=11.0
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHH
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELH 33 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~ 33 (156)
.++..|..++..+...+..+...+.
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444444444444433
No 190
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=83.64 E-value=9.3 Score=24.52 Aligned_cols=18 Identities=50% Similarity=0.643 Sum_probs=6.5
Q ss_pred HhHHHhHHhHHHhHhhHH
Q psy5576 117 HGLKSELHGLKSELHGLK 134 (156)
Q Consensus 117 ~~~~~~i~~l~~~~~~~~ 134 (156)
..+...+..+...+..+.
T Consensus 84 ~~l~~~l~~l~~~~~k~e 101 (126)
T PF13863_consen 84 KKLKAELEELKSEISKLE 101 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 191
>KOG4673|consensus
Probab=83.58 E-value=26 Score=29.68 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=30.5
Q ss_pred hHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 80 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 80 ~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
.+..+..+.+.+...+.....--..+...+..+.+.....+..+......+..+......++..+
T Consensus 496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~ 560 (961)
T KOG4673|consen 496 LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATN 560 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444333333334444445555555555555555555555554444444433
No 192
>KOG1899|consensus
Probab=83.38 E-value=26 Score=29.39 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=34.1
Q ss_pred HHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHH
Q psy5576 17 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 92 (156)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~ 92 (156)
++..+..++.....++..++.-+..-..++...++.+++--.....++.+.-.+-.++..++-.+..++.+..+.+
T Consensus 126 QvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E 201 (861)
T KOG1899|consen 126 QVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETE 201 (861)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHH
Confidence 4444444555555555555555554455554444444443333344444444444444444444444443333333
No 193
>KOG2991|consensus
Probab=83.22 E-value=16 Score=26.94 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=2.5
Q ss_pred HhHhhHH
Q psy5576 128 SELHGLK 134 (156)
Q Consensus 128 ~~~~~~~ 134 (156)
..+..-+
T Consensus 285 q~Lketr 291 (330)
T KOG2991|consen 285 QKLKETR 291 (330)
T ss_pred HHHHHHH
Confidence 3333333
No 194
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=82.99 E-value=8.1 Score=23.38 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=5.4
Q ss_pred hHHHhHHhHHHhHhh
Q psy5576 118 GLKSELHGLKSELHG 132 (156)
Q Consensus 118 ~~~~~i~~l~~~~~~ 132 (156)
.+...+.....++..
T Consensus 47 ~l~~~l~~~E~eL~~ 61 (85)
T PF15188_consen 47 ELKEKLENNEKELKL 61 (85)
T ss_pred HHHHHhhccHHHHHH
Confidence 333333333333333
No 195
>PF15294 Leu_zip: Leucine zipper
Probab=82.16 E-value=19 Score=26.94 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=25.7
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 51 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 51 (156)
+..+|..|..+-+.+...+..++......-.+-..+...+..++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666655555555555555555554444
No 196
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=81.92 E-value=39 Score=30.46 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 101 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 101 ~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
....+...+.....+++.+..+-...+..+..+......+++.+.|++--
T Consensus 266 ~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S 315 (1109)
T PRK10929 266 INRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVS 315 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34445555555556666666666666666666666666677777776643
No 197
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=81.34 E-value=7.6 Score=21.92 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576 97 GLKSELHGLKSELHGLKSELHGLKSEL 123 (156)
Q Consensus 97 ~~~~~~~~l~~~l~~l~~~~~~~~~~i 123 (156)
.+...+.+.+.+...|..++..+..++
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 198
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=81.31 E-value=19 Score=26.47 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=6.4
Q ss_pred hhhhHhhHHhHHHhHHhh
Q psy5576 53 LHGLKSELHGLKSELHGL 70 (156)
Q Consensus 53 ~~~l~~~~~~~~~~~~~~ 70 (156)
...+...+..+...+..+
T Consensus 89 a~~L~~~i~~l~~~i~~l 106 (264)
T PF06008_consen 89 AQDLEQFIQNLQDNIQEL 106 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 199
>COG5283 Phage-related tail protein [Function unknown]
Probab=81.28 E-value=41 Score=30.32 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=28.9
Q ss_pred hHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhH
Q psy5576 24 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 98 (156)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~ 98 (156)
.+...+.-+..+.++..++.......+..+.++..++......+..+-.++.....++..-+.++..+...++.+
T Consensus 65 ameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t 139 (1213)
T COG5283 65 AMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTL 139 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhh
Confidence 333333333334444444433333334444444333333333333333333333333333333444444444333
No 200
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=81.20 E-value=5.1 Score=25.06 Aligned_cols=7 Identities=43% Similarity=0.639 Sum_probs=2.5
Q ss_pred HHHhHHh
Q psy5576 35 LKSELHG 41 (156)
Q Consensus 35 ~~~~~~~ 41 (156)
+..++..
T Consensus 20 ie~ElEe 26 (100)
T PF06428_consen 20 IESELEE 26 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 201
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=80.72 E-value=8.7 Score=22.21 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=7.3
Q ss_pred HhhHHHHHHhhhHhhhhhh
Q psy5576 130 LHGLKSELHGLKSELGLNC 148 (156)
Q Consensus 130 ~~~~~~~~~~l~~~~~~~~ 148 (156)
+..+...+..+....-|+.
T Consensus 36 i~~~~~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 36 IKNLNKQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333433
No 202
>KOG1853|consensus
Probab=80.38 E-value=21 Score=26.33 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=5.4
Q ss_pred hhhhHhhHHhHHHhH
Q psy5576 53 LHGLKSELHGLKSEL 67 (156)
Q Consensus 53 ~~~l~~~~~~~~~~~ 67 (156)
..++....+++..+.
T Consensus 61 nrdl~t~nqrl~~E~ 75 (333)
T KOG1853|consen 61 NRDLETRNQRLTTEQ 75 (333)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 203
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=80.16 E-value=15 Score=24.42 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHHhHHhHHHhHhhHHHH
Q psy5576 119 LKSELHGLKSELHGLKSE 136 (156)
Q Consensus 119 ~~~~i~~l~~~~~~~~~~ 136 (156)
+..+-+.+...+..+...
T Consensus 105 l~~eEe~L~~~le~l~~~ 122 (141)
T PF13874_consen 105 LSPEEEELRKRLEALEAQ 122 (141)
T ss_dssp ------------------
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 333333333334333333
No 204
>KOG0998|consensus
Probab=80.14 E-value=5.8 Score=34.36 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=21.9
Q ss_pred hhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHH
Q psy5576 44 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 102 (156)
Q Consensus 44 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~ 102 (156)
..+...+..+..........-.-+.++...+..+...+.....++..+...+..+....
T Consensus 463 ~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~ 521 (847)
T KOG0998|consen 463 AQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISSLEKELNELQQQL 521 (847)
T ss_pred hhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHHHHHHHhhhHHHH
Confidence 33333333333333333333333333333333333333333334444443333333333
No 205
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.87 E-value=30 Score=27.88 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhHHHhHHhHHH
Q psy5576 108 ELHGLKSELHGLKSELHGLKS 128 (156)
Q Consensus 108 ~l~~l~~~~~~~~~~i~~l~~ 128 (156)
+...|..++..+...+..+..
T Consensus 117 ~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 117 EIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444333333
No 206
>PRK00295 hypothetical protein; Provisional
Probab=79.78 E-value=9.4 Score=21.99 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=4.6
Q ss_pred HHHHHHhHHHHHH
Q psy5576 91 LKSELHGLKSELH 103 (156)
Q Consensus 91 l~~~~~~~~~~~~ 103 (156)
++..+...+..+.
T Consensus 24 Ln~~v~~Qq~~I~ 36 (68)
T PRK00295 24 LNDVLVEQQRVIE 36 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 207
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=79.62 E-value=47 Score=29.97 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576 97 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 138 (156)
Q Consensus 97 ~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~ 138 (156)
.+...+.....++..+..+....++.+.........+++.++
T Consensus 269 ~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~ 310 (1109)
T PRK10929 269 ELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQ 310 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444443
No 208
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=79.08 E-value=30 Score=27.35 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=11.3
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHH
Q psy5576 11 LDGLKSELHGLKSELHGLKSELHGLK 36 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~~~~ 36 (156)
+.-+..++..+..++...+..+...+
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 209
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=78.83 E-value=19 Score=25.04 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHH
Q psy5576 102 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 135 (156)
Q Consensus 102 ~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~ 135 (156)
......++..++.++...+.+++.++++...+..
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555555555555555443
No 210
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=78.79 E-value=20 Score=25.14 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=0.0
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHh-HHhhHHhHHHhhhhhHhhHHhHHHhHHhh
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHG-LKSELHGLKSELHGLKSELHGLKSELHGL 70 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 70 (156)
+..+..+|..|..+...+...+..+....+.+...... ...........+..++.....+...++++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 211
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=78.53 E-value=18 Score=24.51 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=8.9
Q ss_pred HhhHHHHHHhhhHhhh
Q psy5576 130 LHGLKSELHGLKSELG 145 (156)
Q Consensus 130 ~~~~~~~~~~l~~~~~ 145 (156)
+..+...+..++..++
T Consensus 118 ~~Gldeqi~~lkes~~ 133 (155)
T PF06810_consen 118 LKGLDEQIKALKESDP 133 (155)
T ss_pred cccHHHHHHHHHhcCc
Confidence 5555555665555553
No 212
>KOG1899|consensus
Probab=78.29 E-value=40 Score=28.35 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=33.2
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhH
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 74 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (156)
|++|.=++..|..++..--.++..++--+..-+..+....+-+.+---....++.+.-.+-.++..++-.+
T Consensus 120 kesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkl 190 (861)
T KOG1899|consen 120 KESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKL 190 (861)
T ss_pred hhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHH
Confidence 44555555556666555555555555555555544444444333332233333333333333333333333
No 213
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=78.18 E-value=45 Score=28.89 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHH
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 137 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~ 137 (156)
....+++...++........++..+.-.+.+.+.+...+.........++.-.
T Consensus 1058 ~~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~V 1110 (1480)
T COG3096 1058 RIRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQV 1110 (1480)
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33456667777777777777777777777777777777766666666655443
No 214
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.88 E-value=21 Score=24.98 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhHHHhHHh
Q psy5576 107 SELHGLKSELHGLKSELHG 125 (156)
Q Consensus 107 ~~l~~l~~~~~~~~~~i~~ 125 (156)
..+..+....+.-+..|..
T Consensus 142 ~~~~~~~~~anrwTDNI~~ 160 (188)
T PF03962_consen 142 EEIKIAKEAANRWTDNIFS 160 (188)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 3333333333333333333
No 215
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=77.63 E-value=22 Score=25.00 Aligned_cols=74 Identities=27% Similarity=0.350 Sum_probs=31.8
Q ss_pred hHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHH
Q psy5576 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 135 (156)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~ 135 (156)
........++..+.........++..+..++..+..++.....+.........++..++...+.+...+.+.+-
T Consensus 107 ~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 107 KLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444333333444444444444444444444444444444444444444444444444444443
No 216
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=76.97 E-value=27 Score=25.68 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhh
Q psy5576 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 45 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (156)
++.++.++..+...+...+.-...++.++..+...
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35566677777777777776666666666666543
No 217
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=76.17 E-value=14 Score=22.14 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=24.9
Q ss_pred HHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhh
Q psy5576 111 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYF 153 (156)
Q Consensus 111 ~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 153 (156)
.=...++.+...-+.+...-..+......+...+-|-+|-.++
T Consensus 28 ~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~ 70 (89)
T PF00957_consen 28 ERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYI 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555566666666666666666666666664433
No 218
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=75.48 E-value=45 Score=27.53 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=5.5
Q ss_pred hHHHhHHhHHHhHhh
Q psy5576 118 GLKSELHGLKSELHG 132 (156)
Q Consensus 118 ~~~~~i~~l~~~~~~ 132 (156)
.++.++..+...+..
T Consensus 350 ~L~~el~~l~~~l~~ 364 (563)
T TIGR00634 350 ALEEEVDKLEEELDK 364 (563)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 219
>PF13514 AAA_27: AAA domain
Probab=75.30 E-value=63 Score=29.13 Aligned_cols=9 Identities=11% Similarity=0.545 Sum_probs=3.2
Q ss_pred HHHhHHhhH
Q psy5576 77 LKSELHGLK 85 (156)
Q Consensus 77 ~~~~~~~~~ 85 (156)
+...+..+.
T Consensus 755 ~~~~~~~f~ 763 (1111)
T PF13514_consen 755 MEADLAAFE 763 (1111)
T ss_pred HHHHHHHHH
Confidence 333333333
No 220
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=75.27 E-value=62 Score=29.03 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=7.3
Q ss_pred hHHHHHHhhhHhhhhhhh
Q psy5576 132 GLKSELHGLKSELGLNCY 149 (156)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~ 149 (156)
.+...+..+...|.....
T Consensus 864 ~~~~~~~~~~~~~~~~~~ 881 (1047)
T PRK10246 864 ALMQQIAQATQQVEDWGY 881 (1047)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444433333
No 221
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=74.57 E-value=40 Score=26.59 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=4.1
Q ss_pred HHhhHHHHHHH
Q psy5576 81 LHGLKSELHGL 91 (156)
Q Consensus 81 ~~~~~~e~~~l 91 (156)
+..+..++..+
T Consensus 278 i~~LKqeLa~~ 288 (395)
T PF10267_consen 278 IYNLKQELASM 288 (395)
T ss_pred HHHHHHHHHhH
Confidence 33333333333
No 222
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=74.53 E-value=41 Score=26.59 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=8.5
Q ss_pred HHhhHHhHHHHHHHHHHhHH
Q psy5576 7 RKSELDGLKSELHGLKSELH 26 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~ 26 (156)
+..++..++.++...+..+.
T Consensus 176 l~~ql~~~~~~l~~ae~~l~ 195 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLS 195 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 223
>KOG2196|consensus
Probab=73.21 E-value=34 Score=25.04 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=29.4
Q ss_pred HHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHH
Q psy5576 19 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 91 (156)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 91 (156)
.+-..++..-+..|.+.-.++..+...+-.....+..+-.+.........++...++.+.....+++.-+..+
T Consensus 81 NkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~l 153 (254)
T KOG2196|consen 81 NKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPL 153 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444334444444444444444444444444444444333333333333
No 224
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.05 E-value=15 Score=20.79 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhH
Q psy5576 98 LKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130 (156)
Q Consensus 98 ~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~ 130 (156)
.....-.++.++.....+...+..+|..+..++
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444333333333
No 225
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=72.47 E-value=60 Score=27.62 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=14.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5576 89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122 (156)
Q Consensus 89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 122 (156)
..+...+..++.+...+..-...|.-.+..+..-
T Consensus 245 ~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~I 278 (739)
T PF07111_consen 245 EELLETVQHLQEDRDALQATAELLQVRVQSLTDI 278 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 226
>PRK11519 tyrosine kinase; Provisional
Probab=72.35 E-value=61 Score=27.67 Aligned_cols=12 Identities=25% Similarity=0.302 Sum_probs=4.3
Q ss_pred HHHHHHHhHHhH
Q psy5576 17 ELHGLKSELHGL 28 (156)
Q Consensus 17 ~l~~~~~~~~~~ 28 (156)
++..+..++...
T Consensus 275 ql~~l~~~L~~a 286 (719)
T PRK11519 275 QLPEVRSRLDVA 286 (719)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 227
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=71.51 E-value=58 Score=27.02 Aligned_cols=8 Identities=25% Similarity=0.160 Sum_probs=4.2
Q ss_pred hhhHhhhc
Q psy5576 148 CYLTYFLF 155 (156)
Q Consensus 148 ~~~~~~~~ 155 (156)
+.++++||
T Consensus 279 ~~~~~~L~ 286 (555)
T TIGR03545 279 KNFAVDLF 286 (555)
T ss_pred HHHHHHHh
Confidence 45555554
No 228
>PF14282 FlxA: FlxA-like protein
Probab=71.21 E-value=23 Score=22.28 Aligned_cols=17 Identities=18% Similarity=0.559 Sum_probs=6.7
Q ss_pred hHHhHHHHHHHHHHhHH
Q psy5576 10 ELDGLKSELHGLKSELH 26 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~ 26 (156)
.|..|..+|..+..++.
T Consensus 20 ~I~~L~~Qi~~Lq~ql~ 36 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQ 36 (106)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444433333
No 229
>KOG0982|consensus
Probab=70.13 E-value=54 Score=26.16 Aligned_cols=9 Identities=22% Similarity=0.493 Sum_probs=3.4
Q ss_pred HHhHHhHHH
Q psy5576 120 KSELHGLKS 128 (156)
Q Consensus 120 ~~~i~~l~~ 128 (156)
..++..++.
T Consensus 409 eqevkrLrq 417 (502)
T KOG0982|consen 409 EQEVKRLRQ 417 (502)
T ss_pred HHHHHHhcc
Confidence 333333333
No 230
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=69.94 E-value=34 Score=23.78 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=23.3
Q ss_pred hhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHH
Q psy5576 53 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 91 (156)
Q Consensus 53 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 91 (156)
..++...+....+.+.-++.+++....-+...+.+...+
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~ 97 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAV 97 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 445666666667777777777666666555544443333
No 231
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=69.64 E-value=75 Score=27.61 Aligned_cols=42 Identities=7% Similarity=0.079 Sum_probs=26.9
Q ss_pred HHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHh
Q psy5576 111 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTY 152 (156)
Q Consensus 111 ~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (156)
.+.+.-......+=.+++++.-...-.......|.+.|+|+.
T Consensus 446 ~f~A~~e~~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaG 487 (1480)
T COG3096 446 TFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAG 487 (1480)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhC
Confidence 444555555555666666666555666777778888888763
No 232
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=69.19 E-value=1.5 Score=28.96 Aligned_cols=16 Identities=6% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHhHHhHHHhHhhHH
Q psy5576 119 LKSELHGLKSELHGLK 134 (156)
Q Consensus 119 ~~~~i~~l~~~~~~~~ 134 (156)
+...|..++..+...+
T Consensus 88 ls~nI~~IrelI~qAR 103 (138)
T PF06009_consen 88 LSRNISRIRELIAQAR 103 (138)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 233
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=68.89 E-value=36 Score=23.57 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=4.0
Q ss_pred hHHhHHHHHH
Q psy5576 10 ELDGLKSELH 19 (156)
Q Consensus 10 ei~~l~~~l~ 19 (156)
++..|..+..
T Consensus 83 eir~LA~~t~ 92 (213)
T PF00015_consen 83 EIRKLAEQTS 92 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhhhhh
Confidence 3444444333
No 234
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=68.55 E-value=45 Score=24.67 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=10.6
Q ss_pred HHHHHHHhHHhHHhhHHhHHHhhh
Q psy5576 31 ELHGLKSELHGLKSELHGLKSELH 54 (156)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~~~~~~~ 54 (156)
.+..+..++..+...+.....+++
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 235
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=67.82 E-value=30 Score=22.36 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhHHHhHHhHH
Q psy5576 107 SELHGLKSELHGLKSELHGLK 127 (156)
Q Consensus 107 ~~l~~l~~~~~~~~~~i~~l~ 127 (156)
-++..|+.+...++..+.+++
T Consensus 84 ~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 84 LRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 236
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=67.41 E-value=49 Score=24.63 Aligned_cols=63 Identities=25% Similarity=0.341 Sum_probs=28.9
Q ss_pred hHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhh
Q psy5576 70 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 132 (156)
Q Consensus 70 ~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~ 132 (156)
....+.....++.....++......++.+...+.+...++..++.+...+...+..+...+..
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444445555554444444444444444433
No 237
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=65.89 E-value=29 Score=21.42 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=5.0
Q ss_pred hHHhHHHHHHHHHH
Q psy5576 24 ELHGLKSELHGLKS 37 (156)
Q Consensus 24 ~~~~~~~~~~~~~~ 37 (156)
.+......+..+..
T Consensus 13 ~~~~~~~~l~~L~~ 26 (123)
T PF02050_consen 13 ELQEAEEQLEQLQQ 26 (123)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 238
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=65.70 E-value=32 Score=21.79 Aligned_cols=30 Identities=37% Similarity=0.432 Sum_probs=12.0
Q ss_pred HhhHHhHHHHHHHHHHhHHhHHHHHHHHHH
Q psy5576 8 KSELDGLKSELHGLKSELHGLKSELHGLKS 37 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~ 37 (156)
-..+..++..+..+-.++..++..+..+-.
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~E 36 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLE 36 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333333333
No 239
>KOG4687|consensus
Probab=64.39 E-value=58 Score=24.40 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=15.4
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHH
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLK 43 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (156)
.+|.++..+...+..++..-...+..+.+++....
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe 43 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFE 43 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443333
No 240
>PRK14127 cell division protein GpsB; Provisional
Probab=64.16 E-value=17 Score=23.14 Aligned_cols=8 Identities=13% Similarity=0.011 Sum_probs=3.6
Q ss_pred hhhhhhhh
Q psy5576 143 ELGLNCYL 150 (156)
Q Consensus 143 ~~~~~~~~ 150 (156)
.|++||.|
T Consensus 87 n~DiLKRl 94 (109)
T PRK14127 87 NYDILKRL 94 (109)
T ss_pred hHHHHHHH
Confidence 34444444
No 241
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=64.03 E-value=43 Score=24.54 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=10.2
Q ss_pred hhHhhHHhHHHhHHhhHHhHHHHHH
Q psy5576 55 GLKSELHGLKSELHGLKSELHGLKS 79 (156)
Q Consensus 55 ~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (156)
+...++.....++..++....++..
T Consensus 129 DvT~~y~D~~arl~~l~~~~~rl~~ 153 (262)
T PF14257_consen 129 DVTEQYVDLEARLKNLEAEEERLLE 153 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443333
No 242
>KOG1850|consensus
Probab=63.46 E-value=66 Score=24.69 Aligned_cols=120 Identities=16% Similarity=0.217 Sum_probs=61.2
Q ss_pred HhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHH
Q psy5576 26 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 105 (156)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l 105 (156)
..+...-.++..++......+......+.....-+..+..++......+..+..+.-......+..+..+-.+-.+...-
T Consensus 211 e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~ 290 (391)
T KOG1850|consen 211 EEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVR 290 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHH
Confidence 33333344444444444555555555555555555555555555555555555554444445555555554444444444
Q ss_pred HHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhh
Q psy5576 106 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145 (156)
Q Consensus 106 ~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~ 145 (156)
...+..+...+..++.-...+.....++...+..+....+
T Consensus 291 ~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~ 330 (391)
T KOG1850|consen 291 DKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVS 330 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccc
Confidence 4555555555555555555555555555555544444333
No 243
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=63.14 E-value=47 Score=22.94 Aligned_cols=27 Identities=4% Similarity=0.091 Sum_probs=9.6
Q ss_pred HHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 114 SELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 114 ~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
..+..+....................+
T Consensus 170 ~~i~~i~~~~~~~~~~~~~~~~~~~~l 196 (213)
T PF00015_consen 170 ESIEEISEISEQISASSEEIAEAAEEL 196 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 244
>KOG1937|consensus
Probab=62.99 E-value=79 Score=25.47 Aligned_cols=27 Identities=7% Similarity=0.256 Sum_probs=11.0
Q ss_pred HHHhHHHhHHhHHHhHhhHHHHHHhhh
Q psy5576 115 ELHGLKSELHGLKSELHGLKSELHGLK 141 (156)
Q Consensus 115 ~~~~~~~~i~~l~~~~~~~~~~~~~l~ 141 (156)
.+.++...+.....++..+..+...++
T Consensus 390 rikEi~gniRKq~~DI~Kil~etreLq 416 (521)
T KOG1937|consen 390 RIKEIDGNIRKQEQDIVKILEETRELQ 416 (521)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333333
No 245
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=62.95 E-value=73 Score=25.02 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576 88 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123 (156)
Q Consensus 88 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i 123 (156)
+.++...-...+..+..+...|..|..-...+...|
T Consensus 73 i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SI 108 (383)
T PF04100_consen 73 ISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSI 108 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344443433333333333
No 246
>KOG2751|consensus
Probab=62.49 E-value=79 Score=25.26 Aligned_cols=70 Identities=24% Similarity=0.307 Sum_probs=26.7
Q ss_pred hhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576 54 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123 (156)
Q Consensus 54 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i 123 (156)
..+..+-.++-+.+..+..+-..+...+..++.+...+.......-.+........-..+.++..++.++
T Consensus 186 ~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~ 255 (447)
T KOG2751|consen 186 KNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQI 255 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Confidence 3333333334444444444444444444444444433333333333333333333333333333333333
No 247
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=62.13 E-value=48 Score=22.65 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=12.9
Q ss_pred HHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhh
Q psy5576 112 LKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145 (156)
Q Consensus 112 l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~ 145 (156)
+..++..+...+..+..++..+...+..+...|.
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 248
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=61.73 E-value=53 Score=23.00 Aligned_cols=10 Identities=10% Similarity=-0.110 Sum_probs=3.5
Q ss_pred HhHHHhHHhH
Q psy5576 117 HGLKSELHGL 126 (156)
Q Consensus 117 ~~~~~~i~~l 126 (156)
......+..+
T Consensus 145 ~~~~~~anrw 154 (188)
T PF03962_consen 145 KIAKEAANRW 154 (188)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 249
>PHA03011 hypothetical protein; Provisional
Probab=61.33 E-value=37 Score=21.17 Aligned_cols=9 Identities=33% Similarity=0.456 Sum_probs=3.3
Q ss_pred HHHHHHHhH
Q psy5576 111 GLKSELHGL 119 (156)
Q Consensus 111 ~l~~~~~~~ 119 (156)
-|.++++.+
T Consensus 103 ~LraeIDkL 111 (120)
T PHA03011 103 FLRAEIDKL 111 (120)
T ss_pred HHHHHHHHH
Confidence 333333333
No 250
>KOG4687|consensus
Probab=61.31 E-value=67 Score=24.09 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhH
Q psy5576 89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130 (156)
Q Consensus 89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~ 130 (156)
.++-..+.....+...+....+.|-.+...+....+-+..-.
T Consensus 86 qdLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTe 127 (389)
T KOG4687|consen 86 QDLAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETE 127 (389)
T ss_pred hHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHH
Confidence 344444444444444444444444444444444444444333
No 251
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=61.15 E-value=55 Score=23.04 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576 107 SELHGLKSELHGLKSELHGLKSELHGLK 134 (156)
Q Consensus 107 ~~l~~l~~~~~~~~~~i~~l~~~~~~~~ 134 (156)
.+...|..+....+..+..+...+..+.
T Consensus 154 ~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 154 QEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333333
No 252
>PRK12704 phosphodiesterase; Provisional
Probab=61.12 E-value=92 Score=25.60 Aligned_cols=121 Identities=23% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhh----HHhHHHHHHhHHhhHHHHHHHHHHHH
Q psy5576 21 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL----KSELHGLKSELHGLKSELHGLKSELH 96 (156)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e~~~l~~~~~ 96 (156)
....+...+.+...+. -....+.-..........+.++...+.+++.- +.++.+....+..-...++.-...+.
T Consensus 29 a~~~l~~Ae~eAe~I~--keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Le 106 (520)
T PRK12704 29 AEAKIKEAEEEAKRIL--EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLE 106 (520)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHh
Q psy5576 97 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 143 (156)
Q Consensus 97 ~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~ 143 (156)
..+..+......+......+.....++..+.......-..+.++..+
T Consensus 107 kke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ 153 (520)
T PRK12704 107 KREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE 153 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
No 253
>KOG2685|consensus
Probab=60.93 E-value=83 Score=24.99 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5576 87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122 (156)
Q Consensus 87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 122 (156)
++..+...+..++..+.+.+..+..|......++.+
T Consensus 352 EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~d 387 (421)
T KOG2685|consen 352 EVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERD 387 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443333333333
No 254
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=60.58 E-value=36 Score=23.30 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=9.1
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHh
Q psy5576 75 HGLKSELHGLKSELHGLKSELHG 97 (156)
Q Consensus 75 ~~~~~~~~~~~~e~~~l~~~~~~ 97 (156)
+.++.++..++.+|..+.+.+..
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~a 54 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAA 54 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333333
No 255
>KOG1760|consensus
Probab=60.55 E-value=44 Score=21.74 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=15.5
Q ss_pred hHHHhHhhHHHHHHhhhHhhhhhhhhHhhhc
Q psy5576 125 GLKSELHGLKSELHGLKSELGLNCYLTYFLF 155 (156)
Q Consensus 125 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 155 (156)
.+.+.+..+.++...+..++.-||++.|-=|
T Consensus 92 ~l~k~i~~les~~e~I~~~m~~LK~~LYaKF 122 (131)
T KOG1760|consen 92 TLEKEIEELESELESISARMDELKKVLYAKF 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444555555555555565555433
No 256
>PRK11020 hypothetical protein; Provisional
Probab=60.19 E-value=43 Score=21.44 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=10.3
Q ss_pred HHhhHHhHHHHHHHHHHhHHh
Q psy5576 7 RKSELDGLKSELHGLKSELHG 27 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~ 27 (156)
++++|..|...++.+..++..
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaa 23 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAA 23 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444433
No 257
>KOG2010|consensus
Probab=60.06 E-value=77 Score=24.37 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=20.0
Q ss_pred hHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHH
Q psy5576 45 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95 (156)
Q Consensus 45 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~ 95 (156)
.+....-...++..+...+-.++..++..+......+..-..+..++..++
T Consensus 127 kykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~ 177 (405)
T KOG2010|consen 127 KYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKEL 177 (405)
T ss_pred HHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444443333333333333333
No 258
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=59.92 E-value=46 Score=21.71 Aligned_cols=60 Identities=27% Similarity=0.333 Sum_probs=44.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhhc
Q psy5576 96 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLF 155 (156)
Q Consensus 96 ~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 155 (156)
..++.-+..+...+..|......++.++.+=-..+......+..+....++|-.+..|++
T Consensus 68 ~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~ 127 (132)
T PF10392_consen 68 EELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFLQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777777777777777777777778888888888888888777764
No 259
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=59.29 E-value=38 Score=20.53 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=8.9
Q ss_pred HhHHHHHHHHHHhHHhHHHHHHHH
Q psy5576 12 DGLKSELHGLKSELHGLKSELHGL 35 (156)
Q Consensus 12 ~~l~~~l~~~~~~~~~~~~~~~~~ 35 (156)
++|..++..+..++..+...+..+
T Consensus 27 dqLss~V~~L~~kvdql~~dv~~a 50 (85)
T PRK09973 27 NQLASNVQTLNAKIARLEQDMKAL 50 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 260
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=59.22 E-value=42 Score=21.07 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=11.0
Q ss_pred HHhHhhHHHHHHhhhHhhhhhhhhH
Q psy5576 127 KSELHGLKSELHGLKSELGLNCYLT 151 (156)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~~~~ 151 (156)
...+..+...+..-...+.+++-++
T Consensus 57 ~~~l~~~~~~lk~~r~~~~v~k~v~ 81 (106)
T PF05837_consen 57 SEKLEKLEKELKKSRQRWRVMKNVF 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 261
>KOG3647|consensus
Probab=59.05 E-value=74 Score=23.80 Aligned_cols=51 Identities=25% Similarity=0.416 Sum_probs=26.0
Q ss_pred HHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH
Q psy5576 36 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 86 (156)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+..+..+...+..++..++........+...+++-+.++++....+..++.
T Consensus 111 k~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lqs 161 (338)
T KOG3647|consen 111 KSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQS 161 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555555555555555555555555555555444444
No 262
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=58.86 E-value=1.2e+02 Score=26.27 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=28.6
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 138 (156)
Q Consensus 81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~ 138 (156)
...+..++++.-..+..++-.++..+.+-..|.-.+..-+.+|..+..-...+...+.
T Consensus 496 ~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 496 TTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMA 553 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444455555555555555555555554444444433
No 263
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=58.85 E-value=59 Score=22.67 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=9.0
Q ss_pred HHhHHHHHHHHHHhHHhHHhhH
Q psy5576 25 LHGLKSELHGLKSELHGLKSEL 46 (156)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l 46 (156)
+..+..++.+++..+..+...+
T Consensus 18 v~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 18 VQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 264
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=58.08 E-value=40 Score=20.44 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=5.8
Q ss_pred HHHHhhHHhHHHHHH
Q psy5576 5 EKRKSELDGLKSELH 19 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~ 19 (156)
.++..++..|...++
T Consensus 11 ~~LeqeV~~Lq~~L~ 25 (88)
T PF14389_consen 11 SALEQEVAELQKQLQ 25 (88)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334433333333
No 265
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=57.99 E-value=90 Score=24.48 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576 100 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 138 (156)
Q Consensus 100 ~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~ 138 (156)
.++..+..-+..|..++...+..+..+......+...+.
T Consensus 324 ~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 324 EEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433
No 266
>KOG4010|consensus
Probab=57.66 E-value=42 Score=23.53 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=4.7
Q ss_pred hHHhhHHHHHHHH
Q psy5576 80 ELHGLKSELHGLK 92 (156)
Q Consensus 80 ~~~~~~~e~~~l~ 92 (156)
++...+.+|..+.
T Consensus 52 EL~kvEeEI~TLr 64 (208)
T KOG4010|consen 52 ELAKVEEEIVTLR 64 (208)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 267
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=57.02 E-value=54 Score=21.61 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576 99 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 134 (156)
Q Consensus 99 ~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~ 134 (156)
+..+...+.-...|+.++...+.+|..++..+..+.
T Consensus 86 qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 86 QSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444433
No 268
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=56.81 E-value=94 Score=24.34 Aligned_cols=11 Identities=9% Similarity=0.368 Sum_probs=4.3
Q ss_pred HHHHHHhhhHh
Q psy5576 133 LKSELHGLKSE 143 (156)
Q Consensus 133 ~~~~~~~l~~~ 143 (156)
+...+..+..+
T Consensus 373 i~~n~~~le~R 383 (388)
T PF04912_consen 373 IEKNVKKLEER 383 (388)
T ss_pred HHHHHHHHHHH
Confidence 33333444333
No 269
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=56.56 E-value=96 Score=24.34 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=10.4
Q ss_pred HHHHhHHHhHHhHHHhHhhHHHHHHh
Q psy5576 114 SELHGLKSELHGLKSELHGLKSELHG 139 (156)
Q Consensus 114 ~~~~~~~~~i~~l~~~~~~~~~~~~~ 139 (156)
.+...+...+..+...+......+..
T Consensus 324 ~Ev~~l~~~i~~L~~~L~~a~~~l~~ 349 (384)
T PF03148_consen 324 EEVKELRESIEALQEKLDEAEASLQK 349 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333
No 270
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=56.46 E-value=60 Score=21.96 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=10.2
Q ss_pred HhhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy5576 82 HGLKSELHGLKSELHGLKSELHGLKSE 108 (156)
Q Consensus 82 ~~~~~e~~~l~~~~~~~~~~~~~l~~~ 108 (156)
.....+++.+...++++...+.....+
T Consensus 75 ~~~~eelerLe~~iKdl~~lye~Vs~d 101 (157)
T COG3352 75 QDIKEELERLEENIKDLVSLYELVSRD 101 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333333
No 271
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=56.21 E-value=56 Score=21.52 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=18.0
Q ss_pred HHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5576 63 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 110 (156)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~ 110 (156)
+..+..+++.......-+-..+...|..++.+....+.-..++...+.
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIk 56 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIK 56 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333
No 272
>KOG1318|consensus
Probab=56.20 E-value=66 Score=25.55 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=14.4
Q ss_pred chhHHHHhhHHhHHHHH
Q psy5576 2 RRKEKRKSELDGLKSEL 18 (156)
Q Consensus 2 ~~~~~~~~ei~~l~~~l 18 (156)
|||.+++..|.+|..-|
T Consensus 243 RRR~nIN~~IkeLg~li 259 (411)
T KOG1318|consen 243 RRRENINDRIKELGQLI 259 (411)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 78999999999988755
No 273
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=55.99 E-value=49 Score=20.79 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHhHH
Q psy5576 100 SELHGLKSELHGLKSELHGLKSELHGLK 127 (156)
Q Consensus 100 ~~~~~l~~~l~~l~~~~~~~~~~i~~l~ 127 (156)
.++..+..++..++.+...+..++..++
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333444444444444444444333
No 274
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=55.47 E-value=43 Score=25.13 Aligned_cols=38 Identities=13% Similarity=0.400 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576 86 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123 (156)
Q Consensus 86 ~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i 123 (156)
..+..++..+......+..|+.++..|..++..++..|
T Consensus 138 ~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kki 175 (308)
T PF06717_consen 138 YRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKI 175 (308)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 275
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=55.31 E-value=58 Score=21.44 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=23.6
Q ss_pred hHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5576 59 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 112 (156)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l 112 (156)
+..+.+......+.+.+.++..|..++.+....+.-..++...+.-|+..+..-
T Consensus 12 Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqE 65 (134)
T PF08232_consen 12 EWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQE 65 (134)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444444444444333
No 276
>KOG2991|consensus
Probab=54.35 E-value=88 Score=23.25 Aligned_cols=16 Identities=38% Similarity=0.410 Sum_probs=6.1
Q ss_pred hHHHhHHhhHHhHHHH
Q psy5576 62 GLKSELHGLKSELHGL 77 (156)
Q Consensus 62 ~~~~~~~~~~~~~~~~ 77 (156)
++..+++..+..++..
T Consensus 181 rlK~ele~tk~Klee~ 196 (330)
T KOG2991|consen 181 RLKGELEQTKDKLEEA 196 (330)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 277
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=53.37 E-value=43 Score=19.44 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=13.3
Q ss_pred HHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhH
Q psy5576 25 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60 (156)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 60 (156)
.+..+..+..+...+.........+..++..+...+
T Consensus 23 ~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv 58 (70)
T PF04899_consen 23 QQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQV 58 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 278
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=53.16 E-value=76 Score=23.52 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=5.7
Q ss_pred HhhhhhHhhHHhHHHh
Q psy5576 51 SELHGLKSELHGLKSE 66 (156)
Q Consensus 51 ~~~~~l~~~~~~~~~~ 66 (156)
..+..+...+..++.+
T Consensus 187 ~~y~~l~~~i~~lE~~ 202 (259)
T PF08657_consen 187 QRYNQLSNSIAYLEAE 202 (259)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 279
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=53.03 E-value=90 Score=23.14 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=11.8
Q ss_pred HhhhhhHhhHHhHHHhHHhhHHhHHHHHHh
Q psy5576 51 SELHGLKSELHGLKSELHGLKSELHGLKSE 80 (156)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (156)
..+..+...+..+...+..++.+++....+
T Consensus 180 eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~q 209 (259)
T PF08657_consen 180 EKIAALRQRYNQLSNSIAYLEAEVAEQEAQ 209 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444333333333333
No 280
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=52.86 E-value=1.3e+02 Score=24.74 Aligned_cols=121 Identities=21% Similarity=0.203 Sum_probs=0.0
Q ss_pred chhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhH
Q psy5576 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 81 (156)
Q Consensus 2 ~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (156)
.+|..+..++.....++...+..+..-...+......+......+......+.....++.....+...+..+....-..+
T Consensus 62 ~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~ 141 (514)
T TIGR03319 62 KLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI 141 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5576 82 HGLKSELHG---LKSELHGLKSELHGLKSELHGLKSELHGLKSE 122 (156)
Q Consensus 82 ~~~~~e~~~---l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 122 (156)
..+..+-.. +..--.+...+...+-.++..--..-......
T Consensus 142 a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~ 185 (514)
T TIGR03319 142 SGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAK 185 (514)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 281
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=52.75 E-value=1e+02 Score=23.47 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=9.6
Q ss_pred HhhHHhHHHhhhhhHhhHHhHHHhH
Q psy5576 43 KSELHGLKSELHGLKSELHGLKSEL 67 (156)
Q Consensus 43 ~~~l~~~~~~~~~l~~~~~~~~~~~ 67 (156)
...+......+.++...+..+...+
T Consensus 80 ~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 80 EESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 282
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=51.24 E-value=54 Score=19.87 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=16.8
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHH
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKS 37 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~ 37 (156)
+.+....-..|+.++..++..++.=..--..+..
T Consensus 3 k~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~ 36 (88)
T PF14389_consen 3 KQALHERRSALEQEVAELQKQLQEEQDLRRALEK 36 (88)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666665555544333333333
No 283
>KOG0811|consensus
Probab=50.66 E-value=1e+02 Score=22.99 Aligned_cols=74 Identities=9% Similarity=0.119 Sum_probs=41.3
Q ss_pred HhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhhc
Q psy5576 79 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLF 155 (156)
Q Consensus 79 ~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 155 (156)
..+..++..|.+++.-++++-.-+.+.-..++.+++.++........-...+.... ..-...+.|.|++..|++
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~---~yq~~~~k~~~~ll~v~~ 253 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAA---KYQRKARKKKCILLLVGG 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCchhhhhHHHH
Confidence 34555555555555555555555555555555666666555555555444444444 333455667787776654
No 284
>PHA02414 hypothetical protein
Probab=50.62 E-value=59 Score=20.17 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhH
Q psy5576 83 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130 (156)
Q Consensus 83 ~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~ 130 (156)
.+...+.++..-+.++....+--.++.+.+-=++..++..|+.+..--
T Consensus 33 eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~~n 80 (111)
T PHA02414 33 ELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAESN 80 (111)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHhcc
Confidence 344444555555555555555555555566666666666665555433
No 285
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=50.52 E-value=69 Score=20.95 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=11.3
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5576 81 LHGLKSELHGLKSELHGLKSELHGLKSELH 110 (156)
Q Consensus 81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~ 110 (156)
...+......+...+......+..+...+.
T Consensus 76 ~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~ 105 (139)
T PF05615_consen 76 RENYEQLNEEIEQEIEQAKKEIEELKEELE 105 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 286
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=49.97 E-value=1.3e+02 Score=23.93 Aligned_cols=103 Identities=23% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHH----HHhHHHHHHHHH
Q psy5576 31 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE----LHGLKSELHGLK 106 (156)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~----~~~~~~~~~~l~ 106 (156)
.+.-++...+.+...+..-.-.....-..+-.+..+...+..+++.++.+...+..++...... ...+......+.
T Consensus 3 Dik~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~ 82 (418)
T TIGR00414 3 DRKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELK 82 (418)
T ss_pred CHHHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHhHHhHHHhHhhH
Q psy5576 107 SELHGLKSELHGLKSELHGLKSELHGL 133 (156)
Q Consensus 107 ~~l~~l~~~~~~~~~~i~~l~~~~~~~ 133 (156)
.++..++.++..++.++...-..+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~lPN~ 109 (418)
T TIGR00414 83 EELTELSAALKALEAELQDKLLSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC
No 287
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=49.94 E-value=39 Score=17.87 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=7.4
Q ss_pred HHHhHhhHHHHHHhhhHh
Q psy5576 126 LKSELHGLKSELHGLKSE 143 (156)
Q Consensus 126 l~~~~~~~~~~~~~l~~~ 143 (156)
++.++..+...+..++..
T Consensus 4 LrqQv~aL~~qv~~Lq~~ 21 (46)
T PF09006_consen 4 LRQQVEALQGQVQRLQAA 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 288
>KOG3091|consensus
Probab=49.60 E-value=1.4e+02 Score=24.32 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5576 100 SELHGLKSELHGLKSELH 117 (156)
Q Consensus 100 ~~~~~l~~~l~~l~~~~~ 117 (156)
..-+++..++..|-.+++
T Consensus 411 ~~EE~Lr~Kldtll~~ln 428 (508)
T KOG3091|consen 411 PDEEELRAKLDTLLAQLN 428 (508)
T ss_pred ccHHHHHHHHHHHHHHhc
Confidence 333444444444444443
No 289
>KOG3809|consensus
Probab=49.56 E-value=1.4e+02 Score=24.12 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhHHHhHHhHHHhH
Q psy5576 108 ELHGLKSELHGLKSELHGLKSEL 130 (156)
Q Consensus 108 ~l~~l~~~~~~~~~~i~~l~~~~ 130 (156)
.+..|+..|...+..|......+
T Consensus 547 ~la~lq~~I~d~~e~i~~~r~~I 569 (583)
T KOG3809|consen 547 ILANLQKEINDTKEEISKARGRI 569 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333333
No 290
>PRK11546 zraP zinc resistance protein; Provisional
Probab=49.30 E-value=78 Score=21.20 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=14.0
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5576 75 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 113 (156)
Q Consensus 75 ~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~ 113 (156)
..++.++-.-..+++.+-..-.-..+.+..+..++..|.
T Consensus 64 ~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr 102 (143)
T PRK11546 64 SALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLR 102 (143)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 291
>KOG2629|consensus
Probab=49.20 E-value=1.1e+02 Score=23.04 Aligned_cols=73 Identities=23% Similarity=0.320 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576 13 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 88 (156)
Q Consensus 13 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 88 (156)
.+......+..+...+...+..+..++..+.+.+...+. ++...+..+...+-.+...++.++.++..+...+
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lv 191 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLESEINTIKQLV 191 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
No 292
>KOG3564|consensus
Probab=49.05 E-value=1.5e+02 Score=24.31 Aligned_cols=82 Identities=13% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHH
Q psy5576 15 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 94 (156)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~ 94 (156)
..++..+.+.++...++......+....+..+.....++..+...+......+...-.+..+.+.+.+.++..+..+..-
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~ 106 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDM 106 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q ss_pred HH
Q psy5576 95 LH 96 (156)
Q Consensus 95 ~~ 96 (156)
+.
T Consensus 107 l~ 108 (604)
T KOG3564|consen 107 LK 108 (604)
T ss_pred Hh
No 293
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=48.67 E-value=92 Score=21.81 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHh-HHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHH
Q psy5576 39 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG-LKSEL 116 (156)
Q Consensus 39 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~-l~~~~ 116 (156)
+..+...+..+-..+..+-...........-.... ...+...+..+..+...+...+..+......+...... .....
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 117 HGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 117 ~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
.....++..++.....+...+..+
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
No 294
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=48.67 E-value=1.5e+02 Score=24.14 Aligned_cols=136 Identities=19% Similarity=0.193 Sum_probs=0.0
Q ss_pred CchhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHh
Q psy5576 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 80 (156)
Q Consensus 1 ~~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (156)
|-.|-.+.+-+..|..-+...++.+++-...-..+.-++..+...+-.++..+..--.+....-...-.+...+.....+
T Consensus 382 iLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeee 461 (527)
T PF15066_consen 382 ILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEE 461 (527)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHh
Q psy5576 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 139 (156)
Q Consensus 81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~ 139 (156)
+..++.....++ +.+...+.-+..+....+.++-.++.+.....+..-.-+..+..
T Consensus 462 verLQ~lkgelE---kat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs 517 (527)
T PF15066_consen 462 VERLQQLKGELE---KATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKS 517 (527)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 295
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=48.42 E-value=69 Score=20.33 Aligned_cols=90 Identities=24% Similarity=0.420 Sum_probs=0.0
Q ss_pred hhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHH-----------------------H-------------
Q psy5576 53 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL-----------------------H------------- 96 (156)
Q Consensus 53 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~-----------------------~------------- 96 (156)
...+...+..+...+..+...+..+...+..+..-++.+..-. .
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ 80 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhH
Q psy5576 97 ---GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 142 (156)
Q Consensus 97 ---~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~ 142 (156)
.......-+..++..+...+..++..+..+...+..+...++.+..
T Consensus 81 ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~ 129 (129)
T cd00890 81 VEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQQ 129 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 296
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=48.37 E-value=71 Score=26.31 Aligned_cols=92 Identities=10% Similarity=0.244 Sum_probs=0.0
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHH
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 82 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (156)
++.+=+.-|+.+..++..+ ++.+..+++++..++.++...+..+...+.+...++.....++--+-.....+...-.
T Consensus 365 D~kSTQ~aid~it~kvN~i---iek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlleN~~tld~~Ds 441 (550)
T PF00509_consen 365 DLKSTQKAIDQITKKVNSI---IEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLENQRTLDLHDS 441 (550)
T ss_dssp EHHHHHHHHHHHHHHHHHH---HHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHH---HHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhccccchhhhHH
Q ss_pred hhHHHHHHHHHHHHh
Q psy5576 83 GLKSELHGLKSELHG 97 (156)
Q Consensus 83 ~~~~e~~~l~~~~~~ 97 (156)
++..--+.....+..
T Consensus 442 ~~~~L~ekvk~qL~~ 456 (550)
T PF00509_consen 442 NVNNLYEKVKRQLRE 456 (550)
T ss_dssp HHHHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHHhc
No 297
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=48.34 E-value=86 Score=21.37 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHH----HHHHHHHhHHHHHHH
Q psy5576 29 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH----GLKSELHGLKSELHG 104 (156)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~l~~~~~~~~~~~~~ 104 (156)
...+..+-..+-.+-+.+..+-........++..+.....++..+...-.......+.++. ....+..++...+..
T Consensus 21 ~e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~ 100 (158)
T PF09744_consen 21 EEAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQ 100 (158)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 105 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 105 l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
++.....|.............+...-..+......+...+
T Consensus 101 Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~ 140 (158)
T PF09744_consen 101 LEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERE 140 (158)
T ss_pred HHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
No 298
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.25 E-value=1.1e+02 Score=22.55 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhhcC
Q psy5576 91 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLFV 156 (156)
Q Consensus 91 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 156 (156)
.......+..++..++++...|.+++..+++.+.... ......-..++++...++.++...=|
T Consensus 48 ~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~---~~~~t~~~~ie~~l~~l~~~aG~v~V 110 (247)
T COG3879 48 RRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVR---RSVLTDDAALEDRLEKLRMLAGSVPV 110 (247)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHhHHHHHHHHHHHHHHHhccCCC
No 299
>KOG2010|consensus
Probab=47.70 E-value=1.3e+02 Score=23.23 Aligned_cols=94 Identities=18% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHhHHH-HHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHH
Q psy5576 11 LDGLKS-ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 89 (156)
Q Consensus 11 i~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 89 (156)
+.++.. .+.+++...+...--..++..+...+-.++.-++..+.+...++.....+......+++..+.-+..+.....
T Consensus 113 ~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~ 192 (405)
T KOG2010|consen 113 LSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKME 192 (405)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHH
Q psy5576 90 GLKSELHGLKSELHG 104 (156)
Q Consensus 90 ~l~~~~~~~~~~~~~ 104 (156)
++...++.-..-+.+
T Consensus 193 elKe~l~QRdeliee 207 (405)
T KOG2010|consen 193 ELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHH
No 300
>KOG3564|consensus
Probab=47.67 E-value=1.6e+02 Score=24.18 Aligned_cols=77 Identities=13% Similarity=0.215 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH
Q psy5576 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 86 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
++..+....++..++++-...++...+..+.....+...+.-++......+...-.+..+++.+.+.++.++..+..
T Consensus 29 ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d 105 (604)
T KOG3564|consen 29 EFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKD 105 (604)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
No 301
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=47.44 E-value=86 Score=21.14 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHH
Q psy5576 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 87 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 87 (156)
+.+.+++..++......+......+..+........+.+............- ......+..+...+......+......
T Consensus 15 ~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~-~nyq~fI~~Le~~I~q~~~~~~~~~~~ 93 (148)
T COG2882 15 KKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQW-QNYQQFISQLEVAIDQQQSQLSKLRKQ 93 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q psy5576 88 LHGLKSELHGLKSELHGLK 106 (156)
Q Consensus 88 ~~~l~~~~~~~~~~~~~l~ 106 (156)
++...............+.
T Consensus 94 ve~~r~~w~ek~~~~k~~e 112 (148)
T COG2882 94 VEQKREIWQEKQIELKALE 112 (148)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 302
>PLN02320 seryl-tRNA synthetase
Probab=47.35 E-value=1.6e+02 Score=24.20 Aligned_cols=71 Identities=25% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHH
Q psy5576 16 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 91 (156)
Q Consensus 16 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 91 (156)
..+-.+......+..+++.++.+...+...+.. .........+..+...+..++..+...+..++.++..+
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-----~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG-----KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 303
>PF15456 Uds1: Up-regulated During Septation
Probab=47.16 E-value=78 Score=20.59 Aligned_cols=79 Identities=28% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhh-----------HHhHHHHHHhHHhhHHHHHHHHHHHHhH
Q psy5576 30 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL-----------KSELHGLKSELHGLKSELHGLKSELHGL 98 (156)
Q Consensus 30 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~e~~~l~~~~~~~ 98 (156)
.+++.++.++..+...+..++..+. +...+......+..+ .........++......++++...+-.+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q psy5576 99 KSELHGLKSEL 109 (156)
Q Consensus 99 ~~~~~~l~~~l 109 (156)
+........++
T Consensus 101 e~R~~~~~~rL 111 (124)
T PF15456_consen 101 ENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHH
No 304
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=46.84 E-value=62 Score=19.35 Aligned_cols=69 Identities=16% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHH
Q psy5576 60 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 128 (156)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~ 128 (156)
+..+..-+......+..+..++..+..+...+-.....+..++......+..+-.....+...+..+..
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~~ 89 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELNS 89 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
No 305
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=46.67 E-value=1.8e+02 Score=24.54 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred chhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHh-------hHHhHHHhhhhhHhhHHhHHHhHHhhHHhH
Q psy5576 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKS-------ELHGLKSELHGLKSELHGLKSELHGLKSEL 74 (156)
Q Consensus 2 ~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (156)
+.+..++.....+..++..++..+..++.++..+...+..-.- .+..+..++..++..+..+..++..+...+
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 549 RREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q psy5576 75 HGLK 78 (156)
Q Consensus 75 ~~~~ 78 (156)
+.+.
T Consensus 629 ~~~~ 632 (638)
T PRK10636 629 EQML 632 (638)
T ss_pred HHHh
No 306
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=46.08 E-value=1.7e+02 Score=24.30 Aligned_cols=137 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHH
Q psy5576 16 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95 (156)
Q Consensus 16 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~ 95 (156)
...+++...+......+.....++- -..++...+.++..+...--.--..+.....++..+..++......+..+..++
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHH-HHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhh
Q psy5576 96 HGLKSELHGLKSELH-GLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYF 153 (156)
Q Consensus 96 ~~~~~~~~~l~~~l~-~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 153 (156)
......+...-.++. .-...+..+...+.--......+-..+=+-.-.--+.+++.|+
T Consensus 243 ~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~~~~~~~~~~~~L~g~~i~~~~~~~~~~y 301 (555)
T TIGR03545 243 QNDKKQLKADLAELKKAPQNDLKRLENKYAIKSGDLKNFAVDLFGPEIRKYLQKFLKYY 301 (555)
T ss_pred HHhHHHHHHHHHHHHhccHhHHHHHHHHhCCCcccHHHHHHHHhhHHHHHHHHHHHHHH
No 307
>KOG0239|consensus
Probab=46.05 E-value=1.9e+02 Score=24.73 Aligned_cols=136 Identities=26% Similarity=0.310 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 88 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 88 (156)
.+-..+..++..+...+.............+.........+...+. .+......+..+..........+..+..++
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l 250 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG----NYADLRRNIKPLEGLESTIKKKIQALQQEL 250 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----hhhhHHHhhhhhhhhhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHH---HHHHhhhHhhhhhh
Q psy5576 89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK---SELHGLKSELGLNC 148 (156)
Q Consensus 89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~---~~~~~l~~~~~~~~ 148 (156)
..+......+......+.......-.........+......+.... .....+.+++-=|+
T Consensus 251 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 251 EELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 308
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=46.01 E-value=6.8 Score=32.07 Aligned_cols=102 Identities=16% Similarity=0.289 Sum_probs=0.0
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhh----HhhHHhHHHhHHhhHHhHHHHHH
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL----KSELHGLKSELHGLKSELHGLKS 79 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~ 79 (156)
++-...+|+.|...|+.|.....=|-.-++=+...++....++..++...... ..+.......++-+..++..+..
T Consensus 430 ~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~~El~~W~~e~~~~~~~l~~e~~~t~~~~~pl~~~L~ele~ 509 (539)
T PF10243_consen 430 RESVEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQKELEMWRSEYRQHAEALQEEQSITDEALEPLKAQLAELEQ 509 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q ss_pred hHHhhHHHHHHHHHHHHhHHHHHHHH
Q psy5576 80 ELHGLKSELHGLKSELHGLKSELHGL 105 (156)
Q Consensus 80 ~~~~~~~e~~~l~~~~~~~~~~~~~l 105 (156)
.|......|..+...+-.....|..+
T Consensus 510 ~I~~~~~~i~~~ka~Il~Ne~~i~~~ 535 (539)
T PF10243_consen 510 QIKDQQDKICAVKANILKNEEKIQKM 535 (539)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
No 309
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=46.00 E-value=1.3e+02 Score=22.60 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHH
Q psy5576 16 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95 (156)
Q Consensus 16 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~ 95 (156)
..|.++...+.-+-.++..+...+..--...-..-..+...+..+...+.....+..++..++..--. ...+..++.++
T Consensus 96 ddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~-s~kl~~LeqEL 174 (271)
T PF13805_consen 96 DDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQ-SPKLVVLEQEL 174 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-TTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q psy5576 96 HGLKSELHGLKSELHGLKSE 115 (156)
Q Consensus 96 ~~~~~~~~~l~~~l~~l~~~ 115 (156)
...+.+..-.+.++..+..+
T Consensus 175 vraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 175 VRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhhHH
No 310
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=45.88 E-value=1.2e+02 Score=22.24 Aligned_cols=88 Identities=19% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhh--HHhHHHHHHhHHhhHHHHHHHH
Q psy5576 15 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL--KSELHGLKSELHGLKSELHGLK 92 (156)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e~~~l~ 92 (156)
...++..-..+..+- .+.........+..++-++...+..++....++..-+.+. -.++-.++.++...+.+++.+.
T Consensus 104 ~~~~~~~l~~l~~~g-~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~ 182 (262)
T PF14257_consen 104 ADKFDSFLDELSELG-KVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLE 182 (262)
T ss_pred HHHHHHHHHHHhccC-ceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHH
Q psy5576 93 SELHGLKSELH 103 (156)
Q Consensus 93 ~~~~~~~~~~~ 103 (156)
.++..+...+.
T Consensus 183 ~~~~~l~~~v~ 193 (262)
T PF14257_consen 183 GQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHhhc
No 311
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.80 E-value=61 Score=18.93 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5576 69 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122 (156)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 122 (156)
.++.++..+...+.--+.-|++++..+......+..+..++..|-.++..++..
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~ 58 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS 58 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 312
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=45.73 E-value=65 Score=19.22 Aligned_cols=57 Identities=14% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHhHHhHHHHHHHHHHhHHh---HHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhH
Q psy5576 18 LHGLKSELHGLKSELHGLKSELHG---LKSELHGLKSELHGLKSELHGLKSELHGLKSEL 74 (156)
Q Consensus 18 l~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (156)
..++......++.++..++..+.. +...+......+..++..+.....-+..+....
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 313
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=45.71 E-value=1.8e+02 Score=24.45 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred HhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhH
Q psy5576 61 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL-------KSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 133 (156)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~-------~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~ 133 (156)
............++..+...+..++.++..++..+.+- ...+..+..++..++.+++.+...+.++...+.++
T Consensus 552 ~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 552 AELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q psy5576 134 K 134 (156)
Q Consensus 134 ~ 134 (156)
.
T Consensus 632 ~ 632 (638)
T PRK10636 632 L 632 (638)
T ss_pred h
No 314
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=45.61 E-value=1.4e+02 Score=23.00 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhh--HHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE--LHGLKSELHGLKSELHGLKSELHGLKSEL 88 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 88 (156)
++....-+..+ ..........-+..++.....++...+..+.+.... +-.........-..+..+..++..++.++
T Consensus 153 ~~~~~~~i~~~--~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l 230 (362)
T TIGR01010 153 LKEGERLINRL--NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQL 230 (362)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH--------HhHHHhHhhHHHHHHhhhHhhhhh
Q psy5576 89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL--------HGLKSELHGLKSELHGLKSELGLN 147 (156)
Q Consensus 89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i--------~~l~~~~~~~~~~~~~l~~~~~~~ 147 (156)
..+.......--.+..+..++..+..++......+ .....++..+..+.+-.+..|..+
T Consensus 231 ~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~ 297 (362)
T TIGR01010 231 AQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAA 297 (362)
T ss_pred HHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
No 315
>KOG4603|consensus
Probab=45.17 E-value=1e+02 Score=21.39 Aligned_cols=110 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred HhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHH--hHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHH
Q psy5576 43 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS--ELHGLKSELHGLKSELHGLKSELHGLKSELH-----GLKSE 115 (156)
Q Consensus 43 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~-----~l~~~ 115 (156)
.+++..+...+..+...+..+...+...+.++..+.. -+..++.++..+..........+..+.+-.. ...+-
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v 157 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQV 157 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Q ss_pred HHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHh
Q psy5576 116 LHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTY 152 (156)
Q Consensus 116 ~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (156)
..........+++...-+..-+..+-..++--+.=.|
T Consensus 158 ~~~y~~~~~~wrk~krmf~ei~d~~~e~~pk~ksel~ 194 (201)
T KOG4603|consen 158 YREYQKYCKEWRKRKRMFREIIDKLLEGLPKKKSELY 194 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHH
No 316
>COG5283 Phage-related tail protein [Function unknown]
Probab=45.11 E-value=2.5e+02 Score=25.79 Aligned_cols=141 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 86 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|+..|.+-.....-++++...-..-+..-.-....+.+.......-+.++..+...........+.....+..++...+.
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~ 106 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN 106 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhh
Q psy5576 87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLN 147 (156)
Q Consensus 87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~ 147 (156)
-...+...+......+.-.+..+..+..++..+...+.........-...+..+...+..+
T Consensus 107 ~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl 167 (1213)
T COG5283 107 KLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGL 167 (1213)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhH
No 317
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=44.62 E-value=65 Score=18.92 Aligned_cols=72 Identities=26% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhhhHhhHHhHHHhHHhhHHhHHHHHHhHH-hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHH
Q psy5576 53 LHGLKSELHGLKSELHGLKSELHGLKSELH-GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124 (156)
Q Consensus 53 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~ 124 (156)
+.+....+..+..+--+++-.+..+...+. ........+....-++..++..+..++..+...+......++
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 318
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=44.49 E-value=57 Score=18.21 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHH
Q psy5576 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKS 37 (156)
Q Consensus 6 ~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~ 37 (156)
+++.+++.|+..|.++......++.+=.-++.
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 319
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=44.49 E-value=69 Score=19.16 Aligned_cols=49 Identities=29% Similarity=0.289 Sum_probs=0.0
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHh
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 52 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 52 (156)
|+.+.+++..|...+..+-..+...+.....+..+=.-+..-+..+...
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 320
>PF15294 Leu_zip: Leucine zipper
Probab=44.32 E-value=1.4e+02 Score=22.51 Aligned_cols=109 Identities=28% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHH---------hHHhhHHhHHHHHHhHHhh
Q psy5576 14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS---------ELHGLKSELHGLKSELHGL 84 (156)
Q Consensus 14 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 84 (156)
+..+|..+..+...++..+..+.......-.+-..+..++.++......... .+..++..+..+..++..-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHh
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 125 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~ 125 (156)
..+.....+.+...+...-..+-.+...+.....+++.
T Consensus 210 ---~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLek 247 (278)
T PF15294_consen 210 ---LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEK 247 (278)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHH
No 321
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=43.76 E-value=1.5e+02 Score=22.72 Aligned_cols=138 Identities=21% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHH-HhhhhhHhhHHhHHHhHHhhHHhH-HHHHHhHHhh
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSEL-HGLKSELHGL 84 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 84 (156)
++.+++..+.....+...+..+......+......-.+-+.+.- ..+..+..+...+...+.+=+.-+ ..+...+..+
T Consensus 39 Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qL 118 (310)
T PF09755_consen 39 LKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQL 118 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 85 KSELHGLKSELHG-LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 85 ~~e~~~l~~~~~~-~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
..+...+...+.. ....+..+...+..|..+.......+..+.....++...+..=+.-+
T Consensus 119 r~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~l 179 (310)
T PF09755_consen 119 RQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEAL 179 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
No 322
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=43.51 E-value=1.4e+02 Score=22.44 Aligned_cols=129 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHH
Q psy5576 12 DGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 91 (156)
Q Consensus 12 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 91 (156)
..+...+...+..+..+...+..+......+...+...+..+......+......+.+.+.-...---....++.....+
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~ 155 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKAL 155 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHH-HHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 92 KSELHGLKSELH-GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 92 ~~~~~~~~~~~~-~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
......+..... .+...........-.....+......+......+...
T Consensus 156 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~~~l~~~ 205 (334)
T TIGR00998 156 LSAKAALNAAIQEQLNANQALVRGTPLKKQPAVQEAKERLKTAWLALKRT 205 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhCc
No 323
>smart00338 BRLZ basic region leucin zipper.
Probab=43.08 E-value=60 Score=18.10 Aligned_cols=43 Identities=40% Similarity=0.632 Sum_probs=0.0
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhH
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 46 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 46 (156)
|.-=+..+..|...+..+......+...+..+..++..+...+
T Consensus 21 R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 21 RERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 324
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=42.72 E-value=1.1e+02 Score=20.83 Aligned_cols=80 Identities=23% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhh
Q psy5576 75 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFL 154 (156)
Q Consensus 75 ~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 154 (156)
.....+...+..|+.++..+...+ ...+-=++-..++.+++.+..+++.+..............-....+...-..++
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~i--S~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAI--SAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTTLPFF 113 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS---TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH----------
T ss_pred ccccHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred cC
Q psy5576 155 FV 156 (156)
Q Consensus 155 ~~ 156 (156)
|+
T Consensus 114 ~l 115 (161)
T PF04420_consen 114 VL 115 (161)
T ss_dssp --
T ss_pred hh
No 325
>PLN02943 aminoacyl-tRNA ligase
Probab=42.36 E-value=1.1e+02 Score=27.37 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 72 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 72 (156)
+..++..|.++++.++.++..++..+.+-.-.-..-..-+..-+..+.++..++..+...+..+..
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 326
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=42.16 E-value=1.1e+02 Score=20.85 Aligned_cols=123 Identities=22% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHH----hhHHHHHHHHHHHHh
Q psy5576 22 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH----GLKSELHGLKSELHG 97 (156)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~l~~~~~~ 97 (156)
...+..+--.+-.+=.-++.+......-...+..+......+......-+.........+. ....+..++...+..
T Consensus 21 ~e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~ 100 (158)
T PF09744_consen 21 EEAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQ 100 (158)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 98 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 98 ~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
++.....+......+......+...-..+......+......+-..|
T Consensus 101 Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~ 147 (158)
T PF09744_consen 101 LEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKL 147 (158)
T ss_pred HHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
No 327
>KOG2077|consensus
Probab=41.93 E-value=2.1e+02 Score=24.07 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=0.0
Q ss_pred chhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhH
Q psy5576 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 81 (156)
Q Consensus 2 ~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (156)
+-|--|...+++|..+-.-+...+...+..-..++..+.++.+++..++................--=........+.++
T Consensus 322 iVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEM 401 (832)
T KOG2077|consen 322 IVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEM 401 (832)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHH
Q ss_pred HhhHHHHHHHHHHHHhHHHHHH
Q psy5576 82 HGLKSELHGLKSELHGLKSELH 103 (156)
Q Consensus 82 ~~~~~e~~~l~~~~~~~~~~~~ 103 (156)
...-.+.+.+...+..++..+.
T Consensus 402 aRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 402 ARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
No 328
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=41.86 E-value=1e+02 Score=20.34 Aligned_cols=54 Identities=24% Similarity=0.355 Sum_probs=0.0
Q ss_pred hHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy5576 56 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 109 (156)
Q Consensus 56 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l 109 (156)
+...+....+.+..++.-...++.++..-+.++..+...+.+.......++.++
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 329
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=41.54 E-value=1.1e+02 Score=20.89 Aligned_cols=45 Identities=29% Similarity=0.395 Sum_probs=0.0
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHh-----HHhHHhhHHh
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSE-----LHGLKSELHG 48 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~ 48 (156)
|.+++.+|.+.+.+|..+..-+...+.....++.. +..+.+.+..
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlsk 80 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSK 80 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHH
No 330
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=41.45 E-value=39 Score=21.63 Aligned_cols=107 Identities=21% Similarity=0.328 Sum_probs=0.0
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHh-----hHHhHHHH
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG-----LKSELHGL 77 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~ 77 (156)
+++.+-.=|+.+...+..+......+...+..+...+..+......+...+.........+...-.. +.......
T Consensus 19 d~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~~A~~~a 98 (131)
T PF05103_consen 19 DPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEAEEIIEEAQKEA 98 (131)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy5576 78 KSELHGLKSELHGLKSELHGLKSELHGLKSEL 109 (156)
Q Consensus 78 ~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l 109 (156)
..-+.....+...+...+..+.........++
T Consensus 99 ~~i~~~A~~~~~~l~~~~~~lk~~~~~~~~~~ 130 (131)
T PF05103_consen 99 EEIIEEARAEAERLREEIEELKRQAEQFRAQF 130 (131)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 331
>PRK11546 zraP zinc resistance protein; Provisional
Probab=41.44 E-value=1.1e+02 Score=20.55 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=0.0
Q ss_pred hhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHH
Q psy5576 58 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124 (156)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~ 124 (156)
.+...+..-.+.+..+...++.++-.-..+++.+-..-.-..+.+..+..++..|..++.+......
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 332
>KOG4637|consensus
Probab=41.30 E-value=1.8e+02 Score=23.01 Aligned_cols=141 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh------
Q psy5576 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL------ 84 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 84 (156)
+.....++...-..++.....++++...+....+++...+..+..+...+...+.++...+.-...-.......
T Consensus 134 ~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~ 213 (464)
T KOG4637|consen 134 INAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGN 213 (464)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCc
Q ss_pred -HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH----HhHHHhHhhHHHHHHhhhHhhhhhhhhH
Q psy5576 85 -KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL----HGLKSELHGLKSELHGLKSELGLNCYLT 151 (156)
Q Consensus 85 -~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i----~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 151 (156)
..++..+-.........+.+....+..+.+.+..+-... +.-..++-.+.+.+..+.-..-.+.++.
T Consensus 214 ~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~~q~~~~~~enr~~e~m~l~k~~nslkp~l~~lr~~~ 285 (464)
T KOG4637|consen 214 SEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKALIQALRSNSENRLCELMELDKAMNSLKPDLIQLRKIR 285 (464)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCchHHHHHHHH
No 333
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=40.93 E-value=1.1e+02 Score=20.29 Aligned_cols=107 Identities=30% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHhhHHhHHHHHHH-HHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhH-Hh
Q psy5576 6 KRKSELDGLKSELHG-LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL-HG 83 (156)
Q Consensus 6 ~~~~ei~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 83 (156)
+|+.++.....--.. ..............+......+......+.................+..+......+..+. ..
T Consensus 2 ~~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~ 81 (136)
T PF04871_consen 2 ELKSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKE 81 (136)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5576 84 LKSELHGLKSELHGLKSELHGLKSELHGL 112 (156)
Q Consensus 84 ~~~e~~~l~~~~~~~~~~~~~l~~~l~~l 112 (156)
.+.+.+.+---+.++...+.....++..|
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHc
No 334
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=40.90 E-value=81 Score=18.98 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhH
Q psy5576 108 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 142 (156)
Q Consensus 108 ~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~ 142 (156)
++..+...+......|.++..++..+......+.+
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 335
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=40.76 E-value=2e+02 Score=23.52 Aligned_cols=142 Identities=26% Similarity=0.350 Sum_probs=0.0
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHH---
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS--- 79 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--- 79 (156)
.++.++.++..+..++..+..++...+..+..-...+...-..+..........+.++..+..++..+.........
T Consensus 282 E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~ 361 (511)
T PF09787_consen 282 ERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQ 361 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHH
Q ss_pred -hHHhhHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 80 -ELHGLKSELHGLKSELHGLK--SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 80 -~~~~~~~e~~~l~~~~~~~~--~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
.+..-..++..+...+.... ..-.+++..+..+...+-..+..++.+......+.=.++.+...|
T Consensus 362 ~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l 429 (511)
T PF09787_consen 362 LKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQL 429 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHH
No 336
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=40.74 E-value=92 Score=19.56 Aligned_cols=75 Identities=15% Similarity=0.278 Sum_probs=0.0
Q ss_pred HhhHHhHHHHHHHHHHhHHhHHHHHH--HHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhH
Q psy5576 8 KSELDGLKSELHGLKSELHGLKSELH--GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 85 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
..++++.+. .....+..++..+. .....+..+.+.+....+++..+..++..-...++.+...+..+..+++.++
T Consensus 25 ~kef~efKd---~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 25 HKEFDEFKD---SNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHH------HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 337
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=40.63 E-value=1.4e+02 Score=23.52 Aligned_cols=62 Identities=23% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhh
Q psy5576 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL 146 (156)
Q Consensus 81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~ 146 (156)
+..+..++..+...+..+...+.... ....++..++.++..+.+++..+..-+..-.....+
T Consensus 244 ~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~l 305 (406)
T PF02388_consen 244 LESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAEYGDEIPL 305 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceE
No 338
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=40.54 E-value=1.3e+02 Score=26.94 Aligned_cols=66 Identities=21% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 72 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 72 (156)
+..++..|.++++.++.++..+...+.+-.-.-..-..-+..-+..+.++..++..+...+..+..
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~ 992 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKS 992 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 339
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=40.48 E-value=93 Score=19.51 Aligned_cols=47 Identities=26% Similarity=0.424 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHh
Q psy5576 97 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 143 (156)
Q Consensus 97 ~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~ 143 (156)
.....+.-+..++..++..+..+...+..+...+..+...++.+...
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 120 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQQ 120 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 340
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=40.45 E-value=1.8e+02 Score=22.80 Aligned_cols=134 Identities=22% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHhhHHhH-HHHHHHHHHhHHhHHHHHHHHHHhHHhH--HhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHH--
Q psy5576 5 EKRKSELDGL-KSELHGLKSELHGLKSELHGLKSELHGL--KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS-- 79 (156)
Q Consensus 5 ~~~~~ei~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 79 (156)
..+...+.-| ...++.+...+..+..++..+....... .......=..+..+-..+..+..-+=.+-.++..+..
T Consensus 249 ~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH 328 (388)
T PF04912_consen 249 NELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLH 328 (388)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q ss_pred -hHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhh
Q psy5576 80 -ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 141 (156)
Q Consensus 80 -~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~ 141 (156)
+...+-.-+..++.....+...+.....-+..++.. +...+..+...+..+...+..|+
T Consensus 329 ~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 329 EEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccC
No 341
>COG5570 Uncharacterized small protein [Function unknown]
Probab=40.37 E-value=63 Score=17.58 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=0.0
Q ss_pred hHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576 70 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123 (156)
Q Consensus 70 ~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i 123 (156)
+++.+..+.....+++.++.+.-..=+.-...+..+..+.-.|..++..++...
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~~ 56 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQM 56 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhccC
No 342
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=40.20 E-value=1.5e+02 Score=21.89 Aligned_cols=136 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhH-------------HhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576 18 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL-------------HGLKSELHGLKSELHGLKSELHGL 84 (156)
Q Consensus 18 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+..+...+..+..-.......+..+...+..-...-..+...+ ..+...+..+..-+.....--..+
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~ 103 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQL 103 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------HHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhh
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELHGLK-----------SELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYF 153 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~-----------~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 153 (156)
...+......+.-+......+...+.... ..+..+=..+..+..+...+-..+...-..=.+.+-|.++
T Consensus 104 ~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~~~d~i~~~l~~~ 183 (296)
T PF13949_consen 104 RSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKEKLQNDDISKLLSEL 183 (296)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHh
No 343
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=40.01 E-value=1.1e+02 Score=20.41 Aligned_cols=110 Identities=10% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHH
Q psy5576 21 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 100 (156)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~ 100 (156)
+.+.-......+..++..+..+...-..+..-+..+...+............-.......++... +--++..+.....
T Consensus 27 L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~--~~~~e~~i~~~~~ 104 (146)
T PF08702_consen 27 LDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI--IYILETKIINQPS 104 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH--HHHHHHHHhhhHh
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhh
Q psy5576 101 ELHGLKSELHGLKSELHGLKSELHGLKSELHG 132 (156)
Q Consensus 101 ~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~ 132 (156)
.+..|..-+.....++..++..+..+......
T Consensus 105 ~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~Ck~ 136 (146)
T PF08702_consen 105 NIRVLQNILRSNRQKIQRLEQDIDQQERYCKE 136 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
No 344
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=39.72 E-value=2.5e+02 Score=24.20 Aligned_cols=144 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhH----------HhH
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK----------SEL 74 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~ 74 (156)
.++......|...+..+..........+.....+.+.+...+......+......+..++.-+-... .+.
T Consensus 165 ~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er 244 (739)
T PF07111_consen 165 ASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPER 244 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHH
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH----------------------------------------HHHH
Q psy5576 75 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH----------------------------------------GLKS 114 (156)
Q Consensus 75 ~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~----------------------------------------~l~~ 114 (156)
..+...+..+..+.+.+.....-++-.+..+..=+. .|+.
T Consensus 245 ~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLka 324 (739)
T PF07111_consen 245 EELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKA 324 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhh
Q psy5576 115 ELHGLKSELHGLKSELHGLKSELHGLKSELGLNC 148 (156)
Q Consensus 115 ~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~ 148 (156)
+--++...+..+...+..+......-..+-.++.
T Consensus 325 Qeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq 358 (739)
T PF07111_consen 325 QELEHRDSVKQLRGQVASLQEEVASQQQEQAILQ 358 (739)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 345
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=39.69 E-value=1.9e+02 Score=22.98 Aligned_cols=102 Identities=25% Similarity=0.292 Sum_probs=0.0
Q ss_pred CchhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHh----HHhhHHhHHH
Q psy5576 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE----LHGLKSELHG 76 (156)
Q Consensus 1 ~~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~ 76 (156)
|.+-.-++...+.....+..---.....-..+-.+..+...+..+++.++.+.+.+..++...... ...+..+...
T Consensus 1 MlDik~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~ 80 (418)
T TIGR00414 1 MLDRKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKE 80 (418)
T ss_pred CCCHHHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q ss_pred HHHhHHhhHHHHHHHHHHHHhHHHHH
Q psy5576 77 LKSELHGLKSELHGLKSELHGLKSEL 102 (156)
Q Consensus 77 ~~~~~~~~~~e~~~l~~~~~~~~~~~ 102 (156)
+..++..++.....+...+...-..+
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 81 LKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
No 346
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.53 E-value=1e+02 Score=19.74 Aligned_cols=88 Identities=25% Similarity=0.394 Sum_probs=0.0
Q ss_pred hhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHH------------------------------------
Q psy5576 53 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH------------------------------------ 96 (156)
Q Consensus 53 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~------------------------------------ 96 (156)
...+...+..+...+..+..++..+...+..+..-++.+..-..
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~ 80 (129)
T cd00584 1 LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 97 ---GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 97 ---~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
.....+.-+..++..+...+..+...+..+...+..+...++..
T Consensus 81 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 81 VEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 347
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=39.35 E-value=1.2e+02 Score=26.62 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 71 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 71 (156)
+..++..|.+++..++..+..+...+.+-.-.-..=..-+..-+..+.++..++..+...+..+.
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l~ 873 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARLK 873 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 348
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=39.33 E-value=1.9e+02 Score=22.82 Aligned_cols=60 Identities=22% Similarity=0.292 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHH
Q psy5576 13 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 76 (156)
Q Consensus 13 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 76 (156)
.....+..+...+..++.++..+...+.... ....++.++..++..+..++..++.-+..
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHh
No 349
>PRK12704 phosphodiesterase; Provisional
Probab=39.12 E-value=2.2e+02 Score=23.47 Aligned_cols=149 Identities=23% Similarity=0.182 Sum_probs=0.0
Q ss_pred chhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHH----HHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHH
Q psy5576 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGL----KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 77 (156)
Q Consensus 2 ~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 77 (156)
+.+.+...--........+.+..+.....++..- +.++......+..-...+..-...+......+......+...
T Consensus 43 I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~r 122 (520)
T PRK12704 43 ILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQK 122 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 78 KSELHGLKSELHGLKSELHGLKSELHGLKSELHG---LKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 78 ~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~---l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
..++.....++..+.......-..++.+..+-.. +..--.+...+...+-..+..-...-..-....=+..-+
T Consensus 123 e~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~a~ 198 (520)
T PRK12704 123 QQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQAI 198 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 350
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=38.79 E-value=2.2e+02 Score=23.33 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576 15 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 84 (156)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
...+..+..++..+...+..++.-+..-+..+..+..++..++.....+...+.+-+.-...+..=++.+
T Consensus 13 ~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i 82 (508)
T PF04129_consen 13 SENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDI 82 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 351
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=38.75 E-value=1.6e+02 Score=21.65 Aligned_cols=86 Identities=22% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHhHHhHHhhHHhHHHhhhhh-HhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5576 33 HGLKSELHGLKSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 111 (156)
Q Consensus 33 ~~~~~~~~~~~~~l~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~ 111 (156)
..+..++..---....+..+...+ ..++.-+.+.++++.-+..+++-.=.--..-...+..+.++++.....+..++..
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~ 239 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDA 239 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh
Q psy5576 112 LKSELHG 118 (156)
Q Consensus 112 l~~~~~~ 118 (156)
|.++.+.
T Consensus 240 L~~e~~r 246 (289)
T COG4985 240 LRAELER 246 (289)
T ss_pred Hhhhhhh
No 352
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=38.66 E-value=84 Score=21.62 Aligned_cols=52 Identities=37% Similarity=0.449 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHH
Q psy5576 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 137 (156)
Q Consensus 81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~ 137 (156)
++.++..++..-....=++.++ .+.+.|..+...+..++.+++.++ .+...+
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
No 353
>KOG1760|consensus
Probab=38.53 E-value=1.1e+02 Score=19.93 Aligned_cols=77 Identities=26% Similarity=0.395 Sum_probs=0.0
Q ss_pred hhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH---HHHHHHHH--------------------HHhHHHHHHHHHHHHH
Q psy5576 54 HGLKSELHGLKSELHGLKSELHGLKSELHGLKS---ELHGLKSE--------------------LHGLKSELHGLKSELH 110 (156)
Q Consensus 54 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---e~~~l~~~--------------------~~~~~~~~~~l~~~l~ 110 (156)
++.-..+.++.++...++..+...+.++..+.. ++.-+... ...++.....+...+.
T Consensus 19 Qq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~ 98 (131)
T KOG1760|consen 19 QQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIE 98 (131)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHhHHhHHHhH
Q psy5576 111 GLKSELHGLKSELHGLKSEL 130 (156)
Q Consensus 111 ~l~~~~~~~~~~i~~l~~~~ 130 (156)
.++.+...+...+.+++.-+
T Consensus 99 ~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 99 ELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 354
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=38.51 E-value=1.8e+02 Score=22.20 Aligned_cols=119 Identities=7% Similarity=0.063 Sum_probs=0.0
Q ss_pred chhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHH----------HhHHhhH
Q psy5576 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK----------SELHGLK 71 (156)
Q Consensus 2 ~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~----------~~~~~~~ 71 (156)
++-..+...+..++..+......+......+......+......+...+..+...+..+.+.. .++...+
T Consensus 79 ld~~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~ 158 (346)
T PRK10476 79 IDPRPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQAR 158 (346)
T ss_pred ECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHH
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q psy5576 72 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 120 (156)
Q Consensus 72 ~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 120 (156)
.........+.....+.......+.........+......+......+.
T Consensus 159 ~~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~~~l~ 207 (346)
T PRK10476 159 TAQRDAEVSLNQALLQAQAAAAAVGGVDALVAQRAAREAALAIAELHLE 207 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
No 355
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=38.39 E-value=1.7e+02 Score=21.97 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred chhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhH
Q psy5576 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 81 (156)
Q Consensus 2 ~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (156)
++-..+...+...+..+..+..++..+......+..++......+...+..+...+.++.+...-...=-.-...+....
T Consensus 73 ld~~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~ 152 (334)
T TIGR00998 73 LDPTNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHAR 152 (334)
T ss_pred ECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhH
Q psy5576 82 HGLKSELHGLKSELH-GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 133 (156)
Q Consensus 82 ~~~~~e~~~l~~~~~-~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~ 133 (156)
..+......+..... ...................+...+..+......+...
T Consensus 153 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~~~l~~~ 205 (334)
T TIGR00998 153 KALLSAKAALNAAIQEQLNANQALVRGTPLKKQPAVQEAKERLKTAWLALKRT 205 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhCc
No 356
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=38.28 E-value=68 Score=20.47 Aligned_cols=34 Identities=21% Similarity=0.042 Sum_probs=0.0
Q ss_pred HhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhh
Q psy5576 121 SELHGLKSELHGLKSELHGLKSELGLNCYLTYFL 154 (156)
Q Consensus 121 ~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 154 (156)
..+.....++..+...+..+..+.++|++.+.|+
T Consensus 71 ~~~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~ 104 (121)
T PRK09413 71 SELAAAMKQIKELQRLLGKKTMENELLKEAVEYG 104 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 357
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=38.27 E-value=97 Score=19.11 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHH
Q psy5576 21 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 100 (156)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~ 100 (156)
+..-..-+..++......+.-+..-.......+..+......+...+..+......+..-+.. ++.++..+..++.
T Consensus 5 f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~----Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 5 FSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQ----IDQIEEQVTELEQ 80 (99)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q psy5576 101 ELHGLKSELHGLKSELHGL 119 (156)
Q Consensus 101 ~~~~l~~~l~~l~~~~~~~ 119 (156)
-+..+..=...|+.++..+
T Consensus 81 ~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 81 TVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHhhcC
No 358
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=38.25 E-value=2.1e+02 Score=22.97 Aligned_cols=144 Identities=18% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHH----HHHHHHHhHHhHHHHHHHHHHhHHhHH--hhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHH
Q psy5576 5 EKRKSELDGLKS----ELHGLKSELHGLKSELHGLKSELHGLK--SELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 78 (156)
Q Consensus 5 ~~~~~ei~~l~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 78 (156)
.++++++..+++ -.......+..+..++..+...-.... ....-+..-...+......+-..+..++.-++.+.
T Consensus 154 ~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LR 233 (424)
T PF03915_consen 154 QSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLR 233 (424)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH-HhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 79 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL-HGLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 79 ~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i-~~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
. +.......=....+..+..++..+...+..+..-+...+-.+ .-|..++..+-.+.+-+...-+++--|
T Consensus 234 k--DV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL 304 (424)
T PF03915_consen 234 K--DVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDL 304 (424)
T ss_dssp H--HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 359
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=38.02 E-value=1.3e+02 Score=20.62 Aligned_cols=146 Identities=20% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHH-HhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELHGLKSELHG 83 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+..-+..--..+..--..-..++...-.....+.++..++...+ ..+..+......+..++..+.. .+..++..
T Consensus 26 ~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~---~L~~ei~~ 102 (177)
T PF07798_consen 26 KALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ---ELREEINK 102 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_pred hHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhhcC
Q psy5576 84 LKSE-LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLFV 156 (156)
Q Consensus 84 ~~~e-~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 156 (156)
+..+ .-+++.+.............++..+..++ ..++..++..++..+..+-..---.-+.|-...+.|+
T Consensus 103 l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki---~~ei~~lr~~iE~~K~~~lr~~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 103 LRAEVKLDLNLEKGRIREEQAKQELKIQELNNKI---DTEIANLRTEIESLKWDTLRWLVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 360
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=37.47 E-value=1.1e+02 Score=19.50 Aligned_cols=54 Identities=33% Similarity=0.353 Sum_probs=0.0
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhh
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 56 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 56 (156)
+|.++=..+..+...+..+-.++..++..+..+-.+=..+.-+...++..+..+
T Consensus 2 dk~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 361
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=36.96 E-value=1.9e+02 Score=22.22 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHh---HHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhH
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHG---LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 81 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (156)
..+..++..++..+..+...+...+..+...+.+++. +-..-.-...++......+.....++..+...+......+
T Consensus 95 ~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 174 (370)
T PRK11578 95 EQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASL 174 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHH
Q psy5576 82 HGLKSELHGL 91 (156)
Q Consensus 82 ~~~~~e~~~l 91 (156)
......+...
T Consensus 175 ~~~~~~l~~~ 184 (370)
T PRK11578 175 DTAKTNLDYT 184 (370)
T ss_pred HHHHHHHhcC
No 362
>KOG4010|consensus
Probab=36.83 E-value=1.2e+02 Score=21.28 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=0.0
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhH
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSEL 39 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 39 (156)
.+..++.++..++.+|..+..-+..-+.....++..+
T Consensus 45 Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 45 EKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 363
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=36.71 E-value=1.5e+02 Score=20.73 Aligned_cols=146 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHH----hHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHH
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELH----GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 78 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 78 (156)
.|.--...+..|..+.......+..-...-........ .+...+......+.-++.++..++.-+...+.+....-
T Consensus 19 ER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~l 98 (178)
T PF14073_consen 19 ERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVL 98 (178)
T ss_pred HHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q ss_pred HhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhh
Q psy5576 79 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNC 148 (156)
Q Consensus 79 ~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~ 148 (156)
.....+..+...-...+......+..++.+...|.....-....|..+...+..-.....-++....-++
T Consensus 99 e~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQ 168 (178)
T PF14073_consen 99 EQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQ 168 (178)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 364
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=36.32 E-value=1.1e+02 Score=19.02 Aligned_cols=99 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhh-hhhHhhHHhHHHhHHhhHHhHHHHHH-hHHhhHHHHH
Q psy5576 12 DGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL-HGLKSELHGLKSELHGLKSELHGLKS-ELHGLKSELH 89 (156)
Q Consensus 12 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~ 89 (156)
..+...+..+......+...+..+......+.......+..+ .....-+..+...-..+-.++..... ....+.....
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~ 82 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLE 82 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q psy5576 90 GLKSELHGLKSELHGLKSELH 110 (156)
Q Consensus 90 ~l~~~~~~~~~~~~~l~~~l~ 110 (156)
.+...+..+..-+.-.+..+.
T Consensus 83 ~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 83 SLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 365
>PLN02320 seryl-tRNA synthetase
Probab=36.32 E-value=2.4e+02 Score=23.17 Aligned_cols=101 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5576 38 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 117 (156)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~ 117 (156)
++.-+.+..+.....+..-..... -.++-.+..+...+..+++.+..+.+.+...+.. .........+.++..
T Consensus 68 D~k~ir~n~~~v~~~l~~R~~~~~--vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-----~~~~~~~~~l~~~~k 140 (502)
T PLN02320 68 DFKWIRDNKEAVAINIRNRNSNAN--LELVLELYENMLALQKEVERLRAERNAVANKMKG-----KLEPSERQALVEEGK 140 (502)
T ss_pred CHHHHHhCHHHHHHHHHhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCCCCHHHHHHHHH
Q ss_pred hHHHhHHhHHHhHhhHHHHHHhhhHhhh
Q psy5576 118 GLKSELHGLKSELHGLKSELHGLKSELG 145 (156)
Q Consensus 118 ~~~~~i~~l~~~~~~~~~~~~~l~~~~~ 145 (156)
.+..++..+...+..+..++..+-..++
T Consensus 141 ~lk~~i~~le~~~~~~~~~l~~~~l~iP 168 (502)
T PLN02320 141 NLKEGLVTLEEDLVKLTDELQLEAQSIP 168 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
No 366
>KOG0652|consensus
Probab=35.58 E-value=1.2e+02 Score=23.01 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhh
Q psy5576 103 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFL 154 (156)
Q Consensus 103 ~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 154 (156)
.++......|..++.=++++...+.+++..+...+..-...+.+.+.+.|++
T Consensus 23 e~i~~rtrlldnEirI~~sev~ri~he~~~~~ekIkeN~EkIk~Nk~LPYLV 74 (424)
T KOG0652|consen 23 EEIISRTRLLDNEIRIMKSEVQRINHELQAMKEKIKENTEKIKVNKQLPYLV 74 (424)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhhccccCchHH
No 367
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=35.55 E-value=1.5e+02 Score=26.00 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=0.0
Q ss_pred hHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHH
Q psy5576 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 128 (156)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~ 128 (156)
....++.++..++..++.++..+...+.+-.-..+.=..-+..-..++..+..++..+...+..+..
T Consensus 808 d~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l~~ 874 (874)
T PRK05729 808 DVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARLKA 874 (874)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 368
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=34.90 E-value=46 Score=27.03 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhh
Q psy5576 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 45 (156)
Q Consensus 6 ~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (156)
+...+++.++ +|++++++++++++++..+...+..++..
T Consensus 22 a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~~ 60 (489)
T PF11853_consen 22 AMADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEKH 60 (489)
T ss_pred hhhhhhHHHH-HHHHHHHHHHHHHHhhcccccccchhhHh
No 369
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=34.80 E-value=87 Score=17.54 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHH
Q psy5576 102 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 135 (156)
Q Consensus 102 ~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~ 135 (156)
+.+|...+..|+++|..++..+..-.........
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAea 56 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRAAAEA 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 370
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=34.79 E-value=2.1e+02 Score=21.92 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=0.0
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhh-HhhHHhHHHhHHhhHHhHHHHHHhHH
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSELH 82 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (156)
+..+...+..|..+...+...+.........+..+...+...--.+......- +.-.+.+-..++.++.+...+-..+.
T Consensus 22 ~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e 101 (310)
T PF09755_consen 22 REQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYE 101 (310)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhHHHhHHhHHHhHhhHHHHHHhhhHh
Q psy5576 83 GLKSE-LHGLKSELHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLKSE 143 (156)
Q Consensus 83 ~~~~e-~~~l~~~~~~~~~~~~~l~~~l~~l~~~-~~~~~~~i~~l~~~~~~~~~~~~~l~~~ 143 (156)
.-+.- .+.+...+..+..+...++..+..=... +..+...|..+..+.......+..+..+
T Consensus 102 ~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~E 164 (310)
T PF09755_consen 102 QEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRRE 164 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 371
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=34.42 E-value=2e+02 Score=21.53 Aligned_cols=147 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhH--HHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHh------------HHh
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGL--KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE------------LHG 69 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~------------~~~ 69 (156)
..++..++......-..-...--.. ...+.....++..+..++..++..+.........-..- ...
T Consensus 107 ~~eI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~ 186 (301)
T PF14362_consen 107 EKEIDQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKE 186 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHH
Q ss_pred hHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh-----
Q psy5576 70 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL----- 144 (156)
Q Consensus 70 ~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~----- 144 (156)
....+.....++..+...++.....+..... .+...+..........-.........+-..+..+..--
T Consensus 187 ~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~------~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~L~~~~~~ 260 (301)
T PF14362_consen 187 KRAQLDAAQAELDTLQAQIDAAIAALDAQIA------ARKARLDEARQAKVAEFQAIISANDGFLARLEALWELTKEDPS 260 (301)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHHHHhCCCc
Q ss_pred -hhhhhhHhhhcC
Q psy5576 145 -GLNCYLTYFLFV 156 (156)
Q Consensus 145 -~~~~~~~~~~~~ 156 (156)
.+...++.+||+
T Consensus 261 ~~~~~~~i~llfi 273 (301)
T PF14362_consen 261 ALLASLFIFLLFI 273 (301)
T ss_pred HHHHHHHHHHHHH
No 372
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=34.42 E-value=1.5e+02 Score=20.08 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=0.0
Q ss_pred CchhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHh
Q psy5576 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 80 (156)
Q Consensus 1 ~~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (156)
|--|+.+...+-.....-..+..-...++.-.+=.+.++.-+...++....++.-+.......+.++...-........+
T Consensus 48 meVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknke 127 (159)
T PF04949_consen 48 MEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKE 127 (159)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHhHH
Q psy5576 81 LHGLKSELHGLKSELHGLK 99 (156)
Q Consensus 81 ~~~~~~e~~~l~~~~~~~~ 99 (156)
-..+-..+-.+-.+-..++
T Consensus 128 K~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 128 KAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 373
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=34.39 E-value=50 Score=14.69 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHHHHhHHhH
Q psy5576 9 SELDGLKSELHGLKSELHGL 28 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~ 28 (156)
++++.++..|.+++.++..+
T Consensus 1 ~E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLSEC 20 (23)
T ss_pred ChHHHHHHHHHHHHHHHHHH
No 374
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=34.37 E-value=1.1e+02 Score=18.55 Aligned_cols=80 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHhHHhhHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhh
Q psy5576 77 LKSELHGLKSELHGLKSELHGLKSELHG---LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYF 153 (156)
Q Consensus 77 ~~~~~~~~~~e~~~l~~~~~~~~~~~~~---l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 153 (156)
...+++.++..+..+...+......+.. -......++.+...+...+.....++..+..+=..-----..+.-+.++
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK~~~ls~~l~~v~~L 82 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENRKSMLLSVALFFVCFL 82 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q ss_pred hcC
Q psy5576 154 LFV 156 (156)
Q Consensus 154 ~~~ 156 (156)
+|+
T Consensus 83 vY~ 85 (85)
T PF15188_consen 83 VYG 85 (85)
T ss_pred HcC
No 375
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=34.10 E-value=1.8e+02 Score=21.10 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 84 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.++++-.+....+......--..-.....--..+++++..+..-+-..+..+....+..+.+.+.+...+..........
T Consensus 11 ~~~k~n~~~~n~q~~skstgt~s~~~q~~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~ 90 (230)
T PF03904_consen 11 EEEKNNKETNNTQTNSKSTGTQSQKTQMSLENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDK 90 (230)
T ss_pred HHHhccccccchhhhhhccCCCcHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhhcC
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLFV 156 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 156 (156)
.......-+.-++..+.....+ .+... +..++.+.......+..++...-..|.-..+..++-|+
T Consensus 91 --~~k~~~dF~~~Lq~~Lk~V~td--e~k~~---~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~ 155 (230)
T PF03904_consen 91 --TEKVHNDFQDILQDELKDVDTD--ELKNI---AQNEIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIG 155 (230)
T ss_pred --HHHHHHHHHHHHHHHHHhhchH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
No 376
>KOG0249|consensus
Probab=33.96 E-value=3.2e+02 Score=23.79 Aligned_cols=132 Identities=18% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHH
Q psy5576 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 90 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 90 (156)
+..++.++..--..+...+.........+..+...+......+........--...-.++-.... ..+.....+.-.
T Consensus 137 lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvd---Erlqlhlkerma 213 (916)
T KOG0249|consen 137 LPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVD---ERLQLHLKERMA 213 (916)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccH---HHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhh
Q psy5576 91 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145 (156)
Q Consensus 91 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~ 145 (156)
.-.....+..+...+...+..+....+.+...++.+...+..+......-..++.
T Consensus 214 Ale~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mr 268 (916)
T KOG0249|consen 214 ALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELR 268 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhc
No 377
>KOG4005|consensus
Probab=33.74 E-value=1.9e+02 Score=21.23 Aligned_cols=69 Identities=26% Similarity=0.306 Sum_probs=0.0
Q ss_pred hHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576 70 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 138 (156)
Q Consensus 70 ~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~ 138 (156)
......+.+.+...++.++.++..+...++.+...|...-..|=.+-.++...++.+...+..+.....
T Consensus 81 AQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 81 AQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
No 378
>KOG4593|consensus
Probab=33.73 E-value=3.1e+02 Score=23.58 Aligned_cols=148 Identities=23% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHH
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 82 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (156)
.+.+..+.+..+..-+..+...+..++.+.--....+..+...+......+.....++......+......+........
T Consensus 145 l~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~q 224 (716)
T KOG4593|consen 145 LLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQ 224 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHhHHHhHH---hHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 83 GLKSELHGLKSE--LHGLKSELHGLKSELHGLKSELHGLKSELH---GLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 83 ~~~~e~~~l~~~--~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~---~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
....-...+... ...+...+...-..+..+.....+...++. +...-..-+..+.+.++...+-+.++
T Consensus 225 q~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l 297 (716)
T KOG4593|consen 225 QNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKL 297 (716)
T ss_pred HHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
No 379
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.71 E-value=2.5e+02 Score=22.57 Aligned_cols=73 Identities=29% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHH
Q psy5576 16 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 91 (156)
Q Consensus 16 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 91 (156)
..+-.+......+...++.++.....+...+......-.. ....+..+...+..++..+...+..+..+++.+
T Consensus 29 ~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 29 DKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 380
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=33.55 E-value=1.6e+02 Score=20.35 Aligned_cols=66 Identities=17% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 77 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 77 ~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
....+.-+....+.+...+.+++..+..+..++... ++-....+|+++...+..+...+..+...+
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY--qll~hr~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSY--QLLQHRREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhhc
No 381
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=33.54 E-value=1.4e+02 Score=19.65 Aligned_cols=121 Identities=21% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 84 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
..+...++.+......+....-.++..+..++..+...-..+..+...+.........+ ...-+-..-...+.......
T Consensus 30 ~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~ 108 (150)
T PF07200_consen 30 QELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEA 108 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhH
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 126 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l 126 (156)
+.+-+.+...+-+-...+...-...-........-....+.+
T Consensus 109 eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH~R~~K~EkL 150 (150)
T PF07200_consen 109 EEESEELAEEFLDGEIDVDDFLKQFKEKRKLYHLRRAKEEKL 150 (150)
T ss_dssp HHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhccC
No 382
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=33.51 E-value=3.3e+02 Score=23.84 Aligned_cols=128 Identities=21% Similarity=0.182 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHH
Q psy5576 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 89 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 89 (156)
|+-.|..---.++.++.+.-..++.++..-+++..-++..+.....+...+..-..++-..+ .....+...+..+++
T Consensus 428 El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~k---q~~d~e~~rik~ev~ 504 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENK---QQFDIETTRIKIEVE 504 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 90 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 90 ~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
+.-..+..++-.++..+.+-..|.-.+..-+.+|..+..-...+...+..+
T Consensus 505 eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 505 EALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred HHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 383
>PRK01203 prefoldin subunit alpha; Provisional
Probab=33.11 E-value=1.4e+02 Score=19.59 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred HhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH-------------------------------------
Q psy5576 68 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH------------------------------------- 110 (156)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~------------------------------------- 110 (156)
..+..++..++.+++.+..++..+.....++...+..+...-.
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VE 82 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIA 82 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEE
Q ss_pred -HHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhh
Q psy5576 111 -GLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLN 147 (156)
Q Consensus 111 -~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~ 147 (156)
.....+..++..+..+..-+......+..+...|..+
T Consensus 83 K~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l 120 (130)
T PRK01203 83 EERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTV 120 (130)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 384
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=32.78 E-value=2.3e+02 Score=21.91 Aligned_cols=62 Identities=24% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhH
Q psy5576 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 142 (156)
Q Consensus 81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~ 142 (156)
+.++...+..+.....++.........++......+..++..++.+......+...+..+..
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 385
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=32.52 E-value=15 Score=29.84 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=0.0
Q ss_pred CchhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhH-HhhHHhHHHHHH
Q psy5576 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL-HGLKSELHGLKS 79 (156)
Q Consensus 1 ~~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 79 (156)
|.+...|..||..|+..+......+.+.+..+..-++....+-.++. ..+.+-+..+.....+. .+++.-+.++-.
T Consensus 368 ~~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq---~RLedSE~RLr~QQ~eKd~qmksII~RL~~ 444 (495)
T PF12004_consen 368 MKEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQ---ARLEDSEERLRRQQEEKDSQMKSIISRLMA 444 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HhhhhhHHHHHHHhhhhHHHHHHHHhhhhh
Q ss_pred hHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhH
Q psy5576 80 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130 (156)
Q Consensus 80 ~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~ 130 (156)
--+++..+-..+...+...+.-|...+..|..|.+--..+-..+..++.+.
T Consensus 445 vEeELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~ry 495 (495)
T PF12004_consen 445 VEEELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKERY 495 (495)
T ss_dssp ---------------------------------------------------
T ss_pred hhhhhhhhHHHHhcccccchHHHHHhhhhccccccccccccccccccccCC
No 386
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=32.24 E-value=1.5e+02 Score=19.52 Aligned_cols=110 Identities=16% Similarity=0.289 Sum_probs=0.0
Q ss_pred HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhh-------------hhhHhhHHhHHHhHHhhHHhH
Q psy5576 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL-------------HGLKSELHGLKSELHGLKSEL 74 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~l~~~~~~~~~~~~~~~~~~ 74 (156)
+.+|.....+|..+...+.+....+...+.+++.....+.+.+... .--...+..+...+.+-+..+
T Consensus 14 ~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~~dv~nkq~~l 93 (136)
T PF11570_consen 14 RAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQKDVQNKQNKL 93 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5576 75 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 117 (156)
Q Consensus 75 ~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~ 117 (156)
.....++..+..++......++.........+.....-+.+++
T Consensus 94 ~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAenkl~ 136 (136)
T PF11570_consen 94 KAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAENKLN 136 (136)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhccC
No 387
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=32.13 E-value=1.2e+02 Score=20.85 Aligned_cols=52 Identities=37% Similarity=0.402 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 95 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 95 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
+.+++..+...-++-.-|+.++ .+-+.|...+..+++++.+|+.++.+-.++
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 388
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=32.04 E-value=2.5e+02 Score=22.08 Aligned_cols=144 Identities=15% Similarity=0.188 Sum_probs=0.0
Q ss_pred chhHHHHhhHHhHHHHHHHHHHhHHhHH--------HHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHh
Q psy5576 2 RRKEKRKSELDGLKSELHGLKSELHGLK--------SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 73 (156)
Q Consensus 2 ~~~~~~~~ei~~l~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 73 (156)
++-..+...+......+..+..++..+. ............+...+..++..+..+..++......+......
T Consensus 89 l~~~~~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~~~~ 168 (421)
T TIGR03794 89 LFQPELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLAT 168 (421)
T ss_pred ECcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHhHHhhH------HHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhHH----HhHHhHHHhHhhHHHHHHhhhH
Q psy5576 74 LHGLKSELHGLK------SELHGLKSEL-HGLKSELHGLKSELHGLKSELHGLK----SELHGLKSELHGLKSELHGLKS 142 (156)
Q Consensus 74 ~~~~~~~~~~~~------~e~~~l~~~~-~~~~~~~~~l~~~l~~l~~~~~~~~----~~i~~l~~~~~~~~~~~~~l~~ 142 (156)
+.+...-..... .+........ ...+.....+...+..+......+. ..+......+......+..+..
T Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~ 248 (421)
T TIGR03794 169 FKRDRILQQQWREEQEKYDAADKARAIYALQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEARYEIEELEN 248 (421)
T ss_pred hhHHHHHHHHHhhhcccHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh
Q psy5576 143 ELG 145 (156)
Q Consensus 143 ~~~ 145 (156)
.+.
T Consensus 249 ~l~ 251 (421)
T TIGR03794 249 KLN 251 (421)
T ss_pred HHh
No 389
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.84 E-value=1.4e+02 Score=19.01 Aligned_cols=43 Identities=35% Similarity=0.455 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHh
Q psy5576 89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 131 (156)
Q Consensus 89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~ 131 (156)
+.+...+..++..+..+..+...+.........++..++.++.
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 390
>KOG1655|consensus
Probab=31.77 E-value=1.9e+02 Score=20.58 Aligned_cols=133 Identities=13% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHH--HhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHH
Q psy5576 14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK--SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 91 (156)
Q Consensus 14 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 91 (156)
|..-++.+...-.+++.++.++..++..+..++..++ -....++..--+.-.+...++.+...+..+-=+++. ..=.
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQ-a~~t 95 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQ-ANFT 95 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHH-HhHHhHHHhHhhHHHHHHhhhHhhhhh
Q psy5576 92 KSELHGLKSELHGLKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELGLN 147 (156)
Q Consensus 92 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~i~~l~~~~~~~~~~~~~l~~~~~~~ 147 (156)
...+++.+..+..+..-...++.....++ ..|+.+..++.++-..-..++...+.+
T Consensus 96 ~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~ 152 (218)
T KOG1655|consen 96 AESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRN 152 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 391
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=31.47 E-value=2.4e+02 Score=25.31 Aligned_cols=70 Identities=23% Similarity=0.220 Sum_probs=0.0
Q ss_pred hHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHh
Q psy5576 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 131 (156)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~ 131 (156)
....++.++..++..+..++..+...+.+-.-.-+.-..-+..-..++..+..++..+...+..+..-+.
T Consensus 926 d~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~~~~ 995 (995)
T PTZ00419 926 DLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKSLLK 995 (995)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 392
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=31.42 E-value=2.3e+02 Score=21.31 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 84 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
......+......+..+...+...+-....+..........+......+...+..+......+.+.+.-...---....+
T Consensus 58 ~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~ 137 (327)
T TIGR02971 58 DVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDL 137 (327)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH-----hHHhHHHhHhhHHHHHHhhhHhhhhh
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS-----ELHGLKSELHGLKSELHGLKSELGLN 147 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-----~i~~l~~~~~~~~~~~~~l~~~~~~~ 147 (156)
+.-...+......+......+...+......+..+.. .+......+......+......+..+
T Consensus 138 d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~~~ 205 (327)
T TIGR02971 138 DSKALKLRTAEEELEEALASRSEQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLELT 205 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 393
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=31.10 E-value=3e+02 Score=22.66 Aligned_cols=149 Identities=23% Similarity=0.196 Sum_probs=0.0
Q ss_pred chhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHH----HHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHH
Q psy5576 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGL----KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 77 (156)
Q Consensus 2 ~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 77 (156)
+.+.+...--........+.+..+.....++..- +.++......+..-...+..-...+......+...+..+...
T Consensus 37 i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~r 116 (514)
T TIGR03319 37 IIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNK 116 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 78 KSELHGLKSELHGLKSELHGLKSELHGLKSELHG---LKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 78 ~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~---l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
..++.....+...+.......-..++.+..+-.. +..-..+...+...+-..+..-...-..-....=+..-|
T Consensus 117 e~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~ai 192 (514)
T TIGR03319 117 EKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILATAI 192 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 394
>PLN02943 aminoacyl-tRNA ligase
Probab=30.79 E-value=2.3e+02 Score=25.37 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred hHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHH
Q psy5576 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 128 (156)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~ 128 (156)
....++.++..++..++.++..+...+.+-.-.-+.-..-+..-..++..+..++..+...+..+..
T Consensus 886 D~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 886 DISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 395
>KOG1961|consensus
Probab=30.74 E-value=3.3e+02 Score=23.04 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHh-HHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 83 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (156)
+.+-+++..-...+......++..-.+......+ +....+.+.....++.++..-+.++..-+......+.....++..
T Consensus 35 ~e~v~~~lktg~~lr~y~~~ve~~l~k~e~~Siqdyi~es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~ 114 (683)
T KOG1961|consen 35 DELVKEALKTGDDLREYSKQVENELRKAERKSIQDYIKESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKI 114 (683)
T ss_pred hHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5576 84 LKSELHGLKSELHGLKSELHGLKSELHGL 112 (156)
Q Consensus 84 ~~~e~~~l~~~~~~~~~~~~~l~~~l~~l 112 (156)
++..-..+...+...+.-.+.+..-+..+
T Consensus 115 lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~ 143 (683)
T KOG1961|consen 115 LQEKSNDMQLRLENRQAVESKLSQFVDDL 143 (683)
T ss_pred HHHHhhHHHHHHHhHHHHHHHHHHHhccc
No 396
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=30.66 E-value=1.7e+02 Score=19.63 Aligned_cols=123 Identities=20% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5576 32 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 111 (156)
Q Consensus 32 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~ 111 (156)
+..+-.....+...+......+..++.++......++.-...+..++........++........-.-.....-......
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~~~~~~~ 101 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDSGVLELPE 101 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccccccccccc
Q ss_pred HHHHHH---------------hHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhh
Q psy5576 112 LKSELH---------------GLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFL 154 (156)
Q Consensus 112 l~~~~~---------------~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 154 (156)
...... ++..-+..+...+..+......+..--+++...-+.|
T Consensus 102 ~~~~~~~~~~~~~~~~~l~d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~~~~L 159 (160)
T PF13094_consen 102 LPQKSLLEASESRFAPTLCDEELLPLLKQLNKHLESMQNNLQQLKGLLEAIERSYAAL 159 (160)
T ss_pred ccccccccccccccCcccchHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc
No 397
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=30.50 E-value=1.6e+02 Score=19.38 Aligned_cols=107 Identities=30% Similarity=0.275 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHhHHhhHHhH-HHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHH-HH
Q psy5576 27 GLKSELHGLKSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL-HG 104 (156)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~-~~ 104 (156)
.++..+......-..+...-..+ ......+......+......+.................+..+......+..+. ..
T Consensus 2 ~~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~ 81 (136)
T PF04871_consen 2 ELKSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKE 81 (136)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHhHHHhHHhHHHhHhhH
Q psy5576 105 LKSELHGLKSELHGLKSELHGLKSELHGL 133 (156)
Q Consensus 105 l~~~l~~l~~~~~~~~~~i~~l~~~~~~~ 133 (156)
....+..|=-=+..+...+..++.++..+
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHc
No 398
>PRK14140 heat shock protein GrpE; Provisional
Probab=30.41 E-value=2e+02 Score=20.32 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhh
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 55 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 55 (156)
..|+.+...+..+..++..++..+..+..+++........-......
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~ 83 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEK 83 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 399
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=30.16 E-value=3.2e+02 Score=22.61 Aligned_cols=142 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 84 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+.++....-+...+..+...+..+...+..+...++--.+.+..--..... .-.......+..+..-.......+..+
T Consensus 340 d~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~--e~~~~~r~~lekl~~~q~e~~~~l~~v 417 (531)
T PF15450_consen 340 DLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKN--EWESDERKSLEKLDQWQNEMEKHLKEV 417 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhh
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELH-GLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNC 148 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~-~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~ 148 (156)
...++++-.++.++............ .+..+...-..+|..++.++..+-+.++-+...-|+.+
T Consensus 418 ~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~rk 482 (531)
T PF15450_consen 418 QEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPGRK 482 (531)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh
No 400
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=30.07 E-value=1.2e+02 Score=17.70 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHH
Q psy5576 90 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 128 (156)
Q Consensus 90 ~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~ 128 (156)
...........++..+..++..++.+.+.+..++..+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 21 SAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 401
>KOG4438|consensus
Probab=30.07 E-value=2.9e+02 Score=22.19 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHh
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 83 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (156)
|++-......--.+...+-..-..+.....++..++.........-...+..++..+..+...+-........+..+...
T Consensus 126 Re~k~~~~~~~~~q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~ 205 (446)
T KOG4438|consen 126 REEKMDLYRPFIQQLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNK 205 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHH----HhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhh
Q psy5576 84 LKSELHG-LKSELHGLKSELHGLKSELHGLKSEL----HGLKSELHGLKSELHGLKSELHGLKSELGLNC 148 (156)
Q Consensus 84 ~~~e~~~-l~~~~~~~~~~~~~l~~~l~~l~~~~----~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~ 148 (156)
....-.+ .....+.+.-.+..+++....|..++ ..+.+.+++++..+....+.+..+...+.++.
T Consensus 206 ~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ 275 (446)
T KOG4438|consen 206 MKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILE 275 (446)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 402
>PRK10869 recombination and repair protein; Provisional
Probab=30.04 E-value=3.2e+02 Score=22.67 Aligned_cols=146 Identities=19% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhh---------HhhHHhHHHhHHhhHHhHH
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL---------KSELHGLKSELHGLKSELH 75 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l---------~~~~~~~~~~~~~~~~~~~ 75 (156)
+++... ..+...+...=..+..+...+..+..........++-++.++.++ ..++..-...+.+.+.-..
T Consensus 147 D~~~~~-~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~ 225 (553)
T PRK10869 147 DAYANE-TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLT 225 (553)
T ss_pred HHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHhhHH-----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 76 GLKSELHGLKS-----------ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 76 ~~~~~~~~~~~-----------e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
.+..-+..+.. .....-..+.........+...+..+...+.++...+..+...+.---..++.++.++
T Consensus 226 ~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl 305 (553)
T PRK10869 226 TSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRL 305 (553)
T ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q ss_pred hhhhhhH
Q psy5576 145 GLNCYLT 151 (156)
Q Consensus 145 ~~~~~~~ 151 (156)
+.++.+.
T Consensus 306 ~~l~~L~ 312 (553)
T PRK10869 306 SKQISLA 312 (553)
T ss_pred HHHHHHH
No 403
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=29.99 E-value=1.1e+02 Score=20.65 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhh
Q psy5576 104 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCY 149 (156)
Q Consensus 104 ~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~ 149 (156)
.++.-+.....+++.+...+..+..++..+...+...-..+++.+|
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvvRY 88 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVVRY 88 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEc
No 404
>KOG4593|consensus
Probab=29.89 E-value=3.6e+02 Score=23.19 Aligned_cols=142 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 86 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+-+..+.+.+-......-+..+..++..+..-.......+..+..+....+.........+.+.+.++.....++.....
T Consensus 128 ~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q 207 (716)
T KOG4593|consen 128 LERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQ 207 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhh
Q psy5576 87 ELHGLKSELHGLKSELHGLKSELHGLKSE--LHGLKSELHGLKSELHGLKSELHGLKSELGLNC 148 (156)
Q Consensus 87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~--~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~ 148 (156)
.+......+............-...+... ...+...+..--..+..+.....+..++...+.
T Consensus 208 ~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~r 271 (716)
T KOG4593|consen 208 KIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLR 271 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 405
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=29.60 E-value=1.9e+02 Score=19.99 Aligned_cols=59 Identities=17% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5576 63 LKSELHGLKSELHGLKSELHGLKSELHGLKSELH-----GLKSELHGLKSELHGLKSELHGLKS 121 (156)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~-----~~~~~~~~l~~~l~~l~~~~~~~~~ 121 (156)
....+.-++.....+..++..++..++.+...+. ....++.++...+..|++.+...+.
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
No 406
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=29.49 E-value=4.1e+02 Score=23.69 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHH--------HHhHHhHHhhHHhHHHhhhhhHhhHHhHHH-hHHhhHHh
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGL--------KSELHGLKSELHGLKSELHGLKSELHGLKS-ELHGLKSE 73 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 73 (156)
.|.++.+-+...+.....+...+....+.+..+ ..++..........+...+.+......+.. .=..++--
T Consensus 684 ~r~~le~~~~~t~El~~~L~ae~~~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~ 763 (984)
T COG4717 684 ARLALEGNIERTKELNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELS 763 (984)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhh
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH--HhHHhHHHhHhhHHHHHHhhhHhhhhhhhhH
Q psy5576 74 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK--SELHGLKSELHGLKSELHGLKSELGLNCYLT 151 (156)
Q Consensus 74 ~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 151 (156)
.......+. +.+...+...+.....++.++...+..+..++..++ ...+.++.....+...+...-..|..|.+.-
T Consensus 764 ~~~~~~~~~--e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~ 841 (984)
T COG4717 764 ASLDQRELK--EEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAV 841 (984)
T ss_pred hhhhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh
Q psy5576 152 YFL 154 (156)
Q Consensus 152 ~~~ 154 (156)
-.+
T Consensus 842 ~vl 844 (984)
T COG4717 842 QVL 844 (984)
T ss_pred HHH
No 407
>KOG3335|consensus
Probab=29.25 E-value=75 Score=22.08 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=0.0
Q ss_pred HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHh
Q psy5576 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 52 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 52 (156)
++++.+|...+..+..++..++..+..+...+......+..+...
T Consensus 105 ~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el~~~~q~ 149 (181)
T KOG3335|consen 105 KQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESELKPIRQA 149 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccC
No 408
>KOG0642|consensus
Probab=28.90 E-value=1.2e+02 Score=25.09 Aligned_cols=73 Identities=16% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhh
Q psy5576 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYF 153 (156)
Q Consensus 81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 153 (156)
+.-++-+....+......+-+.+++..+++-|+.+....+.....+..++.-+.-.+.+....|..++++|-+
T Consensus 22 lhyiQ~E~~knE~dr~~WElERaElqariAfLqgErk~qenlk~dl~rR~kmlE~~lkeerak~~~lq~gte~ 94 (577)
T KOG0642|consen 22 LHYIQHEWTKNERDRARWELERAELQARIAFLQGERKGQENLKMDLVRRIKMLEFALKEERAKYNKLQPGTEL 94 (577)
T ss_pred HHHHHhHhhhhhhhhhheehhhhhHHHHHHHHhcchhhhHHHHHHHHHHHhcccchhHHhhhhhhcccccccc
No 409
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=28.86 E-value=3.5e+02 Score=22.66 Aligned_cols=119 Identities=24% Similarity=0.276 Sum_probs=0.0
Q ss_pred HhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHH
Q psy5576 23 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 102 (156)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~ 102 (156)
..+......+..+...+...-..+......+...-..+...-..+..++.++..+..-...+...+.++-.-...+..++
T Consensus 255 ~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el 334 (557)
T COG0497 255 EDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEEL 334 (557)
T ss_pred HHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhh
Q psy5576 103 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145 (156)
Q Consensus 103 ~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~ 145 (156)
..+.. .......++.++..+..++......+......+.
T Consensus 335 ~~L~~----~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A 373 (557)
T COG0497 335 AQLDN----SEESLEALEKEVKKLKAELLEAAEALSAIRKKAA 373 (557)
T ss_pred HHhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 410
>PLN02381 valyl-tRNA synthetase
Probab=28.85 E-value=2.2e+02 Score=25.88 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 72 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 72 (156)
+..++..|.+++..++.++..+...+.+-.-....=..-+..-+..+.++..++..+...+..+..
T Consensus 995 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~~kl~~~~~~l~~l~~~l~~l~~ 1060 (1066)
T PLN02381 995 AEAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLTKLLQELEFFEKESKRLEA 1060 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 411
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=28.61 E-value=2.2e+02 Score=23.67 Aligned_cols=92 Identities=10% Similarity=0.246 Sum_probs=0.0
Q ss_pred hHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5576 38 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 117 (156)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~ 117 (156)
++...+..++++..+++.+.... ..+++++..+...+..++..++..+++.-.++-..+.++--+-+.-..|.-.-+
T Consensus 365 D~kSTQ~aid~it~kvN~iiek~---n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlleN~~tld~~Ds 441 (550)
T PF00509_consen 365 DLKSTQKAIDQITKKVNSIIEKM---NKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLENQRTLDLHDS 441 (550)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHTT---TCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHh---ccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhccccchhhhHH
Q ss_pred hHHHhHHhHHHhHhh
Q psy5576 118 GLKSELHGLKSELHG 132 (156)
Q Consensus 118 ~~~~~i~~l~~~~~~ 132 (156)
.+..-.+..+..+..
T Consensus 442 ~~~~L~ekvk~qL~~ 456 (550)
T PF00509_consen 442 NVNNLYEKVKRQLRE 456 (550)
T ss_dssp HHHHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHHhc
No 412
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=28.59 E-value=2.2e+02 Score=20.37 Aligned_cols=122 Identities=16% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHhHHhHHHHHHHHHHhHHhHHh--hHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHH
Q psy5576 19 HGLKSELHGLKSELHGLKSELHGLKS--ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 96 (156)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~ 96 (156)
..+..-+..+...+..+...+..+.. .+..++..+...+..+......+...+......-.....-+.+++.+-+...
T Consensus 5 ~~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~ 84 (207)
T PF05546_consen 5 KKLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKH 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 97 G-LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 97 ~-~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
. ...++..... |-..-..........+..+...+...+.+...+
T Consensus 85 sWs~~DleRFT~----Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L 129 (207)
T PF05546_consen 85 SWSPADLERFTE----LYRNDHENEQAEEEAKEALEEAEEKVEEAFDDL 129 (207)
T ss_pred CCChHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 413
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=28.41 E-value=3.2e+02 Score=22.07 Aligned_cols=123 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhh--HhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHH
Q psy5576 22 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGL--KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 99 (156)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~ 99 (156)
...+.-.+.++...+..+......+...+....-+ ..+....-.-+..++.++...+.++..+..-+..-.-.+..+.
T Consensus 241 ~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~ 320 (434)
T PRK15178 241 KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLS 320 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH--hHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 100 SELHGLKSELHGLKSELHGLKS--ELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 100 ~~~~~l~~~l~~l~~~~~~~~~--~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
..+..++.++.....++..-.. .+...-.+...+.-+.+-.+..|
T Consensus 321 ~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y 367 (434)
T PRK15178 321 AKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARW 367 (434)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
No 414
>KOG4460|consensus
Probab=28.40 E-value=3.6e+02 Score=22.67 Aligned_cols=139 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhH-----------HhhHH
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL-----------HGLKS 72 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-----------~~~~~ 72 (156)
|.++.+-+..+...+++--..+..++++...++.....+...++.+...-..+..-...+.... ..++.
T Consensus 583 ~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~ 662 (741)
T KOG4460|consen 583 KEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKK 662 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHH
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhH
Q psy5576 73 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH-----GLKSELHGLKSELHGLKSELHGLKSELHGLKS 142 (156)
Q Consensus 73 ~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~-----~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~ 142 (156)
++..+..+...+..-++.+.......+.-+....+.+. .-..++..++.-+.++...+.+.......+.+
T Consensus 663 Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~ 737 (741)
T KOG4460|consen 663 ELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIREMVKQVKDIRN 737 (741)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 415
>KOG3091|consensus
Probab=28.32 E-value=3.4e+02 Score=22.32 Aligned_cols=110 Identities=15% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHH
Q psy5576 25 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 104 (156)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~ 104 (156)
+..+...+.--..+...-...+..+.+.+.++...-...-..+..++.++..+..++=.+-..+..+...=-.+...-++
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~ 415 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEE 415 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHH
Q ss_pred HHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576 105 LKSELHGLKSELHGLKSELHGLKSELHGLKSELH 138 (156)
Q Consensus 105 l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~ 138 (156)
+..++..|-.+++.- .++.-++..+-+.+.
T Consensus 416 Lr~Kldtll~~ln~P----nq~k~Rl~~L~e~~r 445 (508)
T KOG3091|consen 416 LRAKLDTLLAQLNAP----NQLKARLDELYEILR 445 (508)
T ss_pred HHHHHHHHHHHhcCh----HHHHHHHHHHHHHHH
No 416
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=28.01 E-value=1.9e+02 Score=19.40 Aligned_cols=95 Identities=20% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhH------------------------------
Q psy5576 49 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL------------------------------ 98 (156)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~------------------------------ 98 (156)
....+.++..+++.+...++.+..++..+...+..++.-++.++.-...-
T Consensus 4 ~~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iG 83 (145)
T COG1730 4 TQQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIG 83 (145)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcC
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHh
Q psy5576 99 ---------KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 143 (156)
Q Consensus 99 ---------~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~ 143 (156)
...+.-+..++..+...+..++..|..+...+..+....+.+...
T Consensus 84 sg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 84 SGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred CceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 417
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=27.93 E-value=2.8e+02 Score=25.13 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred hHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHH
Q psy5576 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127 (156)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~ 127 (156)
....++.+++.++..+..++..+...+.+.......-..-+.....++.....++..++..+..+.
T Consensus 839 D~~~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~~~~~~l~~le~~l~~L~ 904 (1052)
T PRK14900 839 DLAAETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAMLS 904 (1052)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 418
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=27.89 E-value=2.5e+02 Score=20.73 Aligned_cols=122 Identities=20% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5576 33 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 112 (156)
Q Consensus 33 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l 112 (156)
+.++-.+..+.-++-.++.++.+.-.....+...++....-...++..++++..+..+.+-.+.=+...++.+-.+-..=
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eR 91 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRER 91 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhh
Q psy5576 113 KSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFL 154 (156)
Q Consensus 113 ~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 154 (156)
+.-+..+-.++..-.-...-+..-.+.+-+...+--|-+.||
T Consensus 92 n~Li~~llqel~RHg~~~~lLse~a~~mv~DvALaEYaAtFL 133 (277)
T PF15030_consen 92 NRLITHLLQELHRHGPANHLLSELAQSMVNDVALAEYAATFL 133 (277)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhc
No 419
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=27.79 E-value=3.8e+02 Score=22.82 Aligned_cols=90 Identities=13% Similarity=0.205 Sum_probs=0.0
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHh
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 83 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (156)
+.+--.+-..|..++..+...+..+...+.....++......+...-.++.+....---+..--.+.......+..-...
T Consensus 74 ~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~r 153 (632)
T PF14817_consen 74 RENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKR 153 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHH
Q psy5576 84 LKSELHGLKS 93 (156)
Q Consensus 84 ~~~e~~~l~~ 93 (156)
+...++.+..
T Consensus 154 l~~~~~~~q~ 163 (632)
T PF14817_consen 154 LQGQVEQLQD 163 (632)
T ss_pred HHHHHHHHHH
No 420
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=27.70 E-value=20 Score=29.38 Aligned_cols=103 Identities=16% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5576 35 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 114 (156)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~ 114 (156)
...++..+...|..+-...+=|-.-++.+...++.+..++..+..+...+.. .+..+.......+.-|..+|..|+.
T Consensus 433 ~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~~El~~W~~e~~~~~~---~l~~e~~~t~~~~~pl~~~L~ele~ 509 (539)
T PF10243_consen 433 VEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQKELEMWRSEYRQHAE---ALQEEQSITDEALEPLKAQLAELEQ 509 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhhHHHHHHHHHHH
Q ss_pred HHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 115 ELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 115 ~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
.|......|...+..+-.-...|..|
T Consensus 510 ~I~~~~~~i~~~ka~Il~Ne~~i~~~ 535 (539)
T PF10243_consen 510 QIKDQQDKICAVKANILKNEEKIQKM 535 (539)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
No 421
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=27.58 E-value=3.3e+02 Score=21.98 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhh--HHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE--LHGLKSELHGLKSELHGLKSELHGLKSEL 88 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 88 (156)
+..-+.-++.+... .....+.-.+.++......+...+..+...... +-+-.......-.-+..++.++.....++
T Consensus 225 L~~sE~~VN~Ls~r--ar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL 302 (434)
T PRK15178 225 LSFAEQHVNTVSAR--MQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEY 302 (434)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576 89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123 (156)
Q Consensus 89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i 123 (156)
..+........-.+..+..++..|+.++......+
T Consensus 303 ~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 303 AQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHh
No 422
>PRK14160 heat shock protein GrpE; Provisional
Probab=27.45 E-value=2.4e+02 Score=20.29 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576 20 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 84 (156)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.....-.+-...+..+......+...+..+...+.++...+.++..++.++..+...-......+
T Consensus 44 ~~~~~~~~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~ 108 (211)
T PRK14160 44 IIEDSEESNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSD 108 (211)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 423
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=27.43 E-value=2.6e+02 Score=25.30 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 71 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 71 (156)
+..++..+.+++..+.+++..++..+.+..-....-..-+......+......+..+...+..+.
T Consensus 840 ~~~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~~~~~~l~~le~~l~~L~ 904 (1052)
T PRK14900 840 LAAETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAMLS 904 (1052)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 424
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=27.31 E-value=1.5e+02 Score=17.89 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhh
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 55 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 55 (156)
.++..+...++.+..-+..++..-..+...+..+-+.-.+++.++.+
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
No 425
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=27.29 E-value=3.5e+02 Score=22.17 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=0.0
Q ss_pred HhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhH
Q psy5576 51 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 126 (156)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l 126 (156)
.++..-...+..+..++..+..-+..++.-+..++.++..+..++..++..-..+..++..-+.-...+..-+.++
T Consensus 7 ~dy~~e~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i 82 (508)
T PF04129_consen 7 QDYLKESENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDI 82 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 426
>PRK14160 heat shock protein GrpE; Provisional
Probab=27.27 E-value=2.4e+02 Score=20.27 Aligned_cols=71 Identities=24% Similarity=0.204 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhhcC
Q psy5576 82 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLFV 156 (156)
Q Consensus 82 ~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 156 (156)
......+..+...+..+...+..+..++..+...+-.+..+...++.+...-..... .|+..+-+..||-|
T Consensus 50 ~~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~----~~a~e~~~~~LLpV 120 (211)
T PRK14160 50 ESNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIY----SDACEDVLKELLPV 120 (211)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhH
No 427
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=26.95 E-value=1.4e+02 Score=17.39 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHH
Q psy5576 32 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 91 (156)
Q Consensus 32 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 91 (156)
+..++.+++.+--+...++.++.....++...--+.+-.+.-+.++..+.+.....+..+
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
No 428
>TIGR00952 S15_bact ribosomal protein S15, bacterial/organelle. This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13.
Probab=26.93 E-value=1.5e+02 Score=17.91 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
..+..++-..+.....+....+-++..|...|..+..-+..-..+......-..-+..+-.+|+||
T Consensus 2 ~~~k~~li~~~~~~~~DtGS~eVQiA~LT~rI~~L~~Hl~~h~KD~~srrgL~~lv~kRkrlL~YL 67 (86)
T TIGR00952 2 KERKQEIIKEFQLHEKDTGSPEVQIALLTERINQLTEHLKANKKDHHSRRGLLKLVGRRRRLLKYL 67 (86)
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHH
No 429
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.78 E-value=3.8e+02 Score=22.44 Aligned_cols=117 Identities=24% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 84 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.++-..+..+...+.+.--.+..+...+...-..++---..+......+..+..-...+...+..+-.-...+..++..
T Consensus 258 ~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~- 336 (557)
T COG0497 258 SEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQ- 336 (557)
T ss_pred hccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHh
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 125 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~ 125 (156)
++........++.++..+..++......++........
T Consensus 337 ---L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~ 374 (557)
T COG0497 337 ---LDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAK 374 (557)
T ss_pred ---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 430
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=26.53 E-value=4.7e+02 Score=23.37 Aligned_cols=115 Identities=15% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5576 33 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 112 (156)
Q Consensus 33 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l 112 (156)
..+++.+..+...+..+...+..++..+...+......+.+.+..-..+---...-...-.++-+.-+.+..+.+....|
T Consensus 553 ~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~EL 632 (984)
T COG4717 553 SRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAEL 632 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhh
Q psy5576 113 KSELHGLKSELHGLKSELHGLKSELHGLKSELGLN 147 (156)
Q Consensus 113 ~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~ 147 (156)
..+...+..+.......+..+..............
T Consensus 633 ~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~ 667 (984)
T COG4717 633 THQVARLREEQAAFEERVEGLLAVLEAQFIDLSTL 667 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHH
No 431
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=26.44 E-value=2.5e+02 Score=20.11 Aligned_cols=70 Identities=23% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhh
Q psy5576 78 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLN 147 (156)
Q Consensus 78 ~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~ 147 (156)
+..+..+..+++....++.+...+....-..-..++..-............++..++..+..+..+|+++
T Consensus 45 k~dve~l~~e~E~~~k~l~de~~E~r~~~~tke~lk~l~~~~~~~f~a~~edi~rlE~~i~~lgaRwGil 114 (231)
T COG5493 45 KQDVEELRKETEQRQKELADEKLEVRKQKATKEDLKLLQRFQEEEFRATKEDIKRLETIITGLGARWGIL 114 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 432
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.35 E-value=74 Score=25.92 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=0.0
Q ss_pred CchhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHh
Q psy5576 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSE 38 (156)
Q Consensus 1 ~~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~ 38 (156)
+.....+.++|+.|+++++++++++..+...+...+..
T Consensus 23 ~~~~~~~~qkie~L~kql~~Lk~q~~~l~~~v~k~e~~ 60 (489)
T PF11853_consen 23 MADDIDLLQKIEALKKQLEELKAQQDDLNDRVDKVEKH 60 (489)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhcccccccchhhHh
No 433
>PRK05626 rpsO 30S ribosomal protein S15; Reviewed
Probab=26.21 E-value=1.6e+02 Score=17.94 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
......+-..+.....+-...+-+++.|...|..+..-+..-..+......-..-+..+-.+|+|+
T Consensus 5 ~~~k~~li~~f~~~~~DTGS~eVQiA~LT~rI~~L~~Hlk~~~KD~~srrgL~~lv~kRkrlL~YL 70 (89)
T PRK05626 5 KEKKAEIIKEYGRHEGDTGSPEVQVALLTERINHLTEHLKEHKKDHHSRRGLLKMVGQRRKLLDYL 70 (89)
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHhHHHHHHHH
No 434
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=25.92 E-value=1.6e+02 Score=18.97 Aligned_cols=53 Identities=30% Similarity=0.428 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHH---hHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhh
Q psy5576 102 LHGLKSELHGLKSELHGLKS---ELHGLKSELHGLKSELHGLKSELGLNCYLTYFL 154 (156)
Q Consensus 102 ~~~l~~~l~~l~~~~~~~~~---~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 154 (156)
+.....++..+..++..... .+..+..++..+...+..+...++--..+..||
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~~~~~~~ll 56 (144)
T PF04350_consen 1 LKTLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPAEEEIPSLL 56 (144)
T ss_dssp -----------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTGGGHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
No 435
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=25.65 E-value=24 Score=22.55 Aligned_cols=45 Identities=40% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHh
Q psy5576 95 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 139 (156)
Q Consensus 95 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~ 139 (156)
+..+....-.+...+..++..+..+..++..++..+..+......
T Consensus 1 ~~~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 1 IQELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ------------------------------------------HT-
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 436
>KOG0244|consensus
Probab=25.56 E-value=4.9e+02 Score=23.27 Aligned_cols=137 Identities=19% Similarity=0.064 Sum_probs=0.0
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHH
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 82 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (156)
+..++..++..+...++..+.-...+...........+........+...+..++.+...+..++..+......+.....
T Consensus 468 ~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~ 547 (913)
T KOG0244|consen 468 KQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERV 547 (913)
T ss_pred HHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHH
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHh
Q psy5576 83 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 139 (156)
Q Consensus 83 ~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~ 139 (156)
..-..+..-...++........+-............+..+|..++.....+-.....
T Consensus 548 qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~ 604 (913)
T KOG0244|consen 548 QKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKE 604 (913)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 437
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=25.37 E-value=2.4e+02 Score=19.71 Aligned_cols=105 Identities=18% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHH
Q psy5576 15 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 94 (156)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~ 94 (156)
+.++..+-.-+-.++.+++.+...++..-..+.....+-..+...+..++..+..+......+-.-++.-..--+.+...
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~ 150 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKET 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH
Q ss_pred H-HhHHHHHHHHHHHHHHHHHHHHhH
Q psy5576 95 L-HGLKSELHGLKSELHGLKSELHGL 119 (156)
Q Consensus 95 ~-~~~~~~~~~l~~~l~~l~~~~~~~ 119 (156)
+ +.+...=..+...+-.-.......
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (189)
T TIGR02132 151 IQKQIKTQGEQLQAQLLEKQEALAAK 176 (189)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
No 438
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=25.16 E-value=1.9e+02 Score=18.42 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhhcC
Q psy5576 89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLFV 156 (156)
Q Consensus 89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 156 (156)
...-.....+...++....+++.|.+....+..++..++....-+. +.....|+..+--=.|.|+
T Consensus 46 ~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~---e~AR~~l~~~~~gEi~f~i 110 (117)
T COG2919 46 KNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIE---ERARSELGMSKPGEIFFRL 110 (117)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH---HHHHHHhCCCCCCCEEEEe
No 439
>PRK14155 heat shock protein GrpE; Provisional
Probab=25.14 E-value=2.6e+02 Score=20.00 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 48 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 48 (156)
..+..+++.+..++.++...+.-+...+.+++.....-......
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~ 59 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARA 59 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 440
>KOG3215|consensus
Probab=25.12 E-value=2.6e+02 Score=20.03 Aligned_cols=121 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5576 32 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 111 (156)
Q Consensus 32 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~ 111 (156)
+..+..-+-....++......+.....-...+-+.+...+--.-....-+.....++.++..-...+...+.....++..
T Consensus 35 v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E~~mlKtqrv~e~nlre~e~~~q~k~Eiersi~~a~~kie~ 114 (222)
T KOG3215|consen 35 VEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDEPSMLKTQRVIEMNLREIENLVQKKLEIERSIQKARNKIEL 114 (222)
T ss_pred HHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhh
Q psy5576 112 LKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYF 153 (156)
Q Consensus 112 l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 153 (156)
+..++.+.+-. ..-+.....+...+...-.+...++.+-.+
T Consensus 115 lkkql~eaKi~-r~nrqe~~~l~kvis~~p~RsEt~k~l~el 155 (222)
T KOG3215|consen 115 LKKQLHEAKIV-RLNRQEYSALSKVISDCPARSETDKDLNEL 155 (222)
T ss_pred HHHHHHHHHHH-HHhHHHHHHHHHHHhcCCCcchhHHHHHHH
No 441
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=25.00 E-value=3.9e+02 Score=21.99 Aligned_cols=98 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5576 33 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 112 (156)
Q Consensus 33 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l 112 (156)
..+..-+..+..-+..+.......-..+.....-+.++...+.+.......+......+.....++...+..+..++..+
T Consensus 400 ~~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l 479 (507)
T PF05600_consen 400 ESIEEMLSAVEEIISQLTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDAL 479 (507)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHhHHHhHHhHHHhH
Q psy5576 113 KSELHGLKSELHGLKSEL 130 (156)
Q Consensus 113 ~~~~~~~~~~i~~l~~~~ 130 (156)
-++-..++..++.--+..
T Consensus 480 ~~~Tr~Lq~~iE~~ISk~ 497 (507)
T PF05600_consen 480 VERTRELQKQIEADISKR 497 (507)
T ss_pred HHHHHHHHHHHHHHHHHH
No 442
>PLN02381 valyl-tRNA synthetase
Probab=24.91 E-value=3.1e+02 Score=24.95 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred hhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHH
Q psy5576 53 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124 (156)
Q Consensus 53 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~ 124 (156)
+.+...++.++..++..++.++..+...+.+-.....-=...+..-...+..+..++..+...+..+....+
T Consensus 992 ~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~~kl~~~~~~l~~l~~~l~~l~~~~~ 1063 (1066)
T PLN02381 992 AVNAEAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLTKLLQELEFFEKESKRLEAETS 1063 (1066)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 443
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=24.90 E-value=3.3e+02 Score=21.09 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhH
Q psy5576 60 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 126 (156)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l 126 (156)
+..++..+..+..+...+.........++......+..++..+..+......+..++..++......
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTEET 67 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
No 444
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=24.90 E-value=76 Score=21.97 Aligned_cols=138 Identities=24% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHH
Q psy5576 15 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 94 (156)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~ 94 (156)
..-...+...+..+......+..++..+..+..-++..+......+.......-++...+..+..-......+.......
T Consensus 7 aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~~~~ 86 (181)
T PF09311_consen 7 AQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIESRTA 86 (181)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHT---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccccccchh
Q ss_pred ----HHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHh
Q psy5576 95 ----LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTY 152 (156)
Q Consensus 95 ----~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (156)
-......+..+..-...++.....-....................+-..+.+++-+..
T Consensus 87 ~e~~e~~~~~ei~~L~~l~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~E~~~rl~tL~nlv~ 148 (181)
T PF09311_consen 87 AEHEEEKLRSEIDTLQELFPNLEEELRAEISELPSPKSEMAQLQSQGYEIPARLRTLHNLVI 148 (181)
T ss_dssp ---------------------------------------------S-TTS-HHHHHHHHHHH
T ss_pred hhhhhhcccccchhHHHcCccccccccccccccccccchHHHHHhccccchHHHHHHHHHHH
No 445
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=24.87 E-value=2.3e+02 Score=19.21 Aligned_cols=86 Identities=12% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhh
Q psy5576 67 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL 146 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~ 146 (156)
+-.+..++..+..-+......-..+...+..+. ..+..+....-.-+..++..+..+..+...+........+...|
T Consensus 3 LYel~~~~~~l~~~~e~~~~d~e~~~dtLe~i~---~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~ 79 (162)
T PF05565_consen 3 LYELTDEYLELLELLEEGDLDEEAIADTLESIE---DEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDR 79 (162)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHhhhc
Q psy5576 147 NCYLTYFLF 155 (156)
Q Consensus 147 ~~~~~~~~~ 155 (156)
++......+
T Consensus 80 Lk~yL~~~m 88 (162)
T PF05565_consen 80 LKEYLLDAM 88 (162)
T ss_pred HHHHHHHHH
No 446
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=24.84 E-value=3.3e+02 Score=20.99 Aligned_cols=87 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHh---HHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576 12 DGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG---LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 88 (156)
Q Consensus 12 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 88 (156)
..+..++..++..+..++..+...+..+......+.. +-.+..-...++......+...+.++......+......+
T Consensus 95 ~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 174 (370)
T PRK11578 95 EQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASL 174 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhH
Q psy5576 89 HGLKSELHGL 98 (156)
Q Consensus 89 ~~l~~~~~~~ 98 (156)
+.....+...
T Consensus 175 ~~~~~~l~~~ 184 (370)
T PRK11578 175 DTAKTNLDYT 184 (370)
T ss_pred HHHHHHHhcC
No 447
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.81 E-value=1.9e+02 Score=18.24 Aligned_cols=86 Identities=24% Similarity=0.412 Sum_probs=0.0
Q ss_pred HHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHH-----------------------HH------------
Q psy5576 60 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL-----------------------HG------------ 104 (156)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~-----------------------~~------------ 104 (156)
...+...+..+...+..+...+..+...+..+......+..-. ..
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ 80 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Q ss_pred ----HHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhh
Q psy5576 105 ----LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145 (156)
Q Consensus 105 ----l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~ 145 (156)
......-+...++.++..+..+...+..+...+..+...+.
T Consensus 81 ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 81 VEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 448
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.55 E-value=1.8e+02 Score=17.81 Aligned_cols=34 Identities=35% Similarity=0.576 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHH
Q psy5576 94 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127 (156)
Q Consensus 94 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~ 127 (156)
.+..+...+..++.++..+..++..+...+.-++
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 449
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=24.22 E-value=4e+02 Score=21.81 Aligned_cols=136 Identities=17% Similarity=0.268 Sum_probs=0.0
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHH
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 82 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (156)
+-..+..+...+..++..+......+...+..+...++....... .++..+......+..+++.+..++-.-+.. .
T Consensus 54 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~---ek~~~l~~~~~~L~~~F~~LA~~ile~k~~-~ 129 (475)
T PRK10361 54 QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHAD---DKIRQMINSEQRLSEQFENLANRIFEHSNR-R 129 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHhHHHhHHhHHHhHhhHHHHHHhhhH
Q psy5576 83 GLKSELHGLKSELHGLKSELHGLKSELHGLK----SELHGLKSELHGLKSELHGLKSELHGLKS 142 (156)
Q Consensus 83 ~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~----~~~~~~~~~i~~l~~~~~~~~~~~~~l~~ 142 (156)
-...-...+..-+.=+...+.....++..+. .....+..+|..+...-..+..+...+-+
T Consensus 130 f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ 193 (475)
T PRK10361 130 VDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTR 193 (475)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 450
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=24.16 E-value=2.2e+02 Score=21.88 Aligned_cols=40 Identities=30% Similarity=0.450 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHH
Q psy5576 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 50 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 50 (156)
|..+..++..+..++..+..+...++.++..+.+.+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 1 ISELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 451
>PRK00106 hypothetical protein; Provisional
Probab=23.57 E-value=4.3e+02 Score=21.98 Aligned_cols=129 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhh---HH-hHHHHHHhHHhhHHHH
Q psy5576 13 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL---KS-ELHGLKSELHGLKSEL 88 (156)
Q Consensus 13 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~e~ 88 (156)
.|-..-.....-+...+.....+. -....+.-..........+.++.....+++.- +. ++.+....+..-...+
T Consensus 36 ~~~~A~~~A~~IleeAe~eAe~I~--keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE~L 113 (535)
T PRK00106 36 TLLNAEQEAVNLRGKAERDAEHIK--KTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSL 113 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHh
Q psy5576 89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 143 (156)
Q Consensus 89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~ 143 (156)
+.-...+......+......+.....++......+..+.......-..+.++..+
T Consensus 114 ekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~ 168 (535)
T PRK00106 114 DRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQA 168 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
No 452
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=23.55 E-value=1.9e+02 Score=18.64 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhh
Q psy5576 90 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYF 153 (156)
Q Consensus 90 ~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 153 (156)
.+...+......+..+...+..+..++......+......+...-.....+......++.+.-+
T Consensus 59 ~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~~~l~~ 122 (133)
T PF06148_consen 59 SLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEKALLKLLLDI 122 (133)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHHHT-SSSSHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 453
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=23.47 E-value=1.7e+02 Score=17.30 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=0.0
Q ss_pred HhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhhcC
Q psy5576 79 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLFV 156 (156)
Q Consensus 79 ~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 156 (156)
..+..+..++++......+.-..+-+-.+.++.|..+-+.+...-......-..+....---.-.+.+.--+..++|+
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~ 80 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIII 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhh
No 454
>KOG3433|consensus
Probab=23.41 E-value=2.7e+02 Score=19.60 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHH
Q psy5576 25 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 104 (156)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~ 104 (156)
+...+..+..+-..--...+.+....-=++=-...+.....-++.+..+++........+...+.....-....+.....
T Consensus 41 ~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~e 120 (203)
T KOG3433|consen 41 WQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSEAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDE 120 (203)
T ss_pred hhHHHHHHHHHhccchHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 105 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 105 l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
+..++..+...+..+..++..++.--..+-.....+...|
T Consensus 121 l~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~ 160 (203)
T KOG3433|consen 121 LTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTM 160 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
No 455
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=23.39 E-value=4.2e+02 Score=21.73 Aligned_cols=141 Identities=26% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhh-----------HHhHHHhHHhhHHhH
Q psy5576 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE-----------LHGLKSELHGLKSEL 74 (156)
Q Consensus 6 ~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~ 74 (156)
.+..+..++...++-+.......+..+...+.........-+..-..+..--.. +..+..+...+..++
T Consensus 211 ~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~ 290 (511)
T PF09787_consen 211 EYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEI 290 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHH
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhh
Q psy5576 75 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL 146 (156)
Q Consensus 75 ~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~ 146 (156)
..+..++..+..++.+.......-.......-..+...-......+.++.-+...+..+..........+.+
T Consensus 291 ~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~ 362 (511)
T PF09787_consen 291 QLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQL 362 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHH
No 456
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=23.10 E-value=1.2e+02 Score=15.46 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhh
Q psy5576 113 KSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYF 153 (156)
Q Consensus 113 ~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 153 (156)
..++.+++.-+=.+..++.+-...+..++..++-.-+.+|+
T Consensus 3 k~~ieelkqll~rle~eirett~sl~ninksidq~dk~~y~ 43 (46)
T PF08181_consen 3 KKKIEELKQLLWRLENEIRETTDSLRNINKSIDQYDKYTYM 43 (46)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhchhhh
No 457
>KOG0240|consensus
Probab=23.04 E-value=4.6e+02 Score=22.07 Aligned_cols=144 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred hHHHHhhHHhHHHHHHH------HHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHH
Q psy5576 4 KEKRKSELDGLKSELHG------LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 77 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 77 (156)
++.+...+..+...... ...-...-.-.+........-+......+.............+..++..+..++.+.
T Consensus 354 kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~k 433 (607)
T KOG0240|consen 354 KDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQK 433 (607)
T ss_pred HhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhh
Q psy5576 78 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLN 147 (156)
Q Consensus 78 ~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~ 147 (156)
..++.........+..+..+..............+..+...++.....-+.+....-..+..+...|+..
T Consensus 434 d~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~ 503 (607)
T KOG0240|consen 434 DDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQK 503 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
No 458
>KOG4438|consensus
Probab=23.02 E-value=4.1e+02 Score=21.44 Aligned_cols=146 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHh-
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG- 83 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (156)
..+-.+.+.+-.....+....+.+..++..+......-...+..+...+.++...+.........+-.+....+..-..
T Consensus 134 ~~~~~q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~ 213 (446)
T KOG4438|consen 134 RPFIQQLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSE 213 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 84 LKSELHGLKSELHGLKSELHGLKSELH----GLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 84 ~~~e~~~l~~~~~~~~~~~~~l~~~l~----~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
.....+.+.--+..+++....+...+. .|..-+.++.--+...++-..++......++.....++-+
T Consensus 214 ~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti 284 (446)
T KOG4438|consen 214 KNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTI 284 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
No 459
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=22.93 E-value=2.5e+02 Score=18.96 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHH
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 75 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 75 (156)
..+...+......++.+-..+..+...+..+...+..+..+-..+......+-.+...+..-.+.+...+.
T Consensus 3 ~~y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~ 73 (157)
T PF04136_consen 3 RQYLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQ 73 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
No 460
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=22.87 E-value=3.2e+02 Score=20.15 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=0.0
Q ss_pred hHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHH
Q psy5576 56 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 104 (156)
Q Consensus 56 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~ 104 (156)
+...+.++...+..++.........+..+..+...+......++..+.+
T Consensus 206 L~~~~~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l~~ 254 (254)
T PF15458_consen 206 LSECLERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELLKE 254 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 461
>KOG2685|consensus
Probab=22.75 E-value=4e+02 Score=21.33 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHH----------HHHHHhHHHHHH
Q psy5576 34 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL----------KSELHGLKSELH 103 (156)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l----------~~~~~~~~~~~~ 103 (156)
.+...+.+.......+..++...-.++......+..++..+.....-+......++.- ....-.+-.++.
T Consensus 275 af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~ 354 (421)
T KOG2685|consen 275 AFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEVH 354 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhh
Q psy5576 104 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL 146 (156)
Q Consensus 104 ~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~ 146 (156)
.+..-+..|..++.+.+..+..+-.....+...+.-..+.+.+
T Consensus 355 ~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k~nsL~I 397 (421)
T KOG2685|consen 355 ELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIKANSLFI 397 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
No 462
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=22.72 E-value=2.9e+02 Score=24.22 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhh
Q psy5576 98 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145 (156)
Q Consensus 98 ~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~ 145 (156)
...++..+..++..+..++..++.-++.......-+..++..+.+.|+
T Consensus 425 t~~e~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkkfg 472 (800)
T TIGR01063 425 TGLEREKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQFG 472 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhC
No 463
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.67 E-value=1.8e+02 Score=17.23 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 116 LHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 116 ~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
++.+..+-..++.++..++.+++.....+-+..-+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~di 36 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQIKEDI 36 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
No 464
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=22.67 E-value=4e+02 Score=21.29 Aligned_cols=147 Identities=22% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHH---HhHHhHHhh-HHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLK---SELHGLKSE-LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 80 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (156)
.++...+.............+..+........ ......... +.+++.+...+...+..+...+....-....+..+
T Consensus 242 ~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q 321 (458)
T COG3206 242 SALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQ 321 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHH
Q ss_pred HHhhHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhh
Q psy5576 81 LHGLKSE-LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYF 153 (156)
Q Consensus 81 ~~~~~~e-~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 153 (156)
+..+... ...+..-+.....+..-+......|...+..++.....+-.....+.+--.++ +..-.-|-+|+
T Consensus 322 ~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~--~~~r~~ye~lL 393 (458)
T COG3206 322 LAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREA--EAARSLYETLL 393 (458)
T ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHH--HHHHHHHHHHH
No 465
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=22.26 E-value=2.1e+02 Score=17.81 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhh
Q psy5576 107 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL 146 (156)
Q Consensus 107 ~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~ 146 (156)
..+..+..+++.++.+|-.+-.+...+...+..++...+.
T Consensus 4 ~~L~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K~~~~~ 43 (102)
T TIGR01801 4 QSLEDLRAEVDQLNRQILALISRRGEVVAQIGHAKSAQGP 43 (102)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
No 466
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=22.17 E-value=2e+02 Score=17.65 Aligned_cols=94 Identities=13% Similarity=0.214 Sum_probs=0.0
Q ss_pred HhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----------hH
Q psy5576 51 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH-----------GL 119 (156)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~-----------~~ 119 (156)
..+..+...+..+...+..+..-...+.........-...+.................+..|..... -.
T Consensus 8 ~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~ 87 (117)
T smart00503 8 EKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTR 87 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHH
Q ss_pred HHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 120 KSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 120 ~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
......+...+...-...+.++..|
T Consensus 88 ~~q~~~L~~~f~~~m~~fq~~Q~~~ 112 (117)
T smart00503 88 KAQTEKLRKKFKEVMNEFQRLQRKY 112 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>PRK14162 heat shock protein GrpE; Provisional
Probab=22.11 E-value=3e+02 Score=19.51 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhh
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 59 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 59 (156)
.++..+...+..+..++..+...+..+..+++........-..........
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~ 89 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQ 89 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=21.99 E-value=4.9e+02 Score=22.00 Aligned_cols=66 Identities=23% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 70 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 70 (156)
+.+.+.++.+...++.+...+..+...+.........+-.+...++.+...+.....-+..-+.++
T Consensus 41 ~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f 106 (618)
T PF06419_consen 41 SPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERF 106 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 469
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=21.96 E-value=2.4e+02 Score=18.43 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 84 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
..+-.+++.|..+++.+ ...=...+...+...+.+...+.........+...+..+... .....=......-+..+
T Consensus 23 ~~v~~~l~~LEae~q~L---~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~-~~~r~yk~eYk~llk~y 98 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQL---EQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQD-SKVRWYKDEYKELLKKY 98 (126)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGSTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cchhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q psy5576 85 KSELHGLKSELHGLKSELHGLKS 107 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~ 107 (156)
..-...++..+...+..+..++.
T Consensus 99 ~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 99 KDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 470
>KOG3647|consensus
Probab=21.80 E-value=3.6e+02 Score=20.35 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHH
Q psy5576 26 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 105 (156)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l 105 (156)
..+-..+-+.-.-+-++-..-.-...........--.+..--.-++..+..+..++......++........+...+..-
T Consensus 66 r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierr 145 (338)
T KOG3647|consen 66 RELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERR 145 (338)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhh
Q psy5576 106 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL 146 (156)
Q Consensus 106 ~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~ 146 (156)
..+++.+...+..++.---....+....+.+++.+-..|.+
T Consensus 146 k~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l 186 (338)
T KOG3647|consen 146 KAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFL 186 (338)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
No 471
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=21.66 E-value=3.2e+02 Score=19.79 Aligned_cols=131 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhHHHHH-HHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHH-hHHhhHHH-HHHH
Q psy5576 15 KSELHGLKSELHGLKSEL-HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS-ELHGLKSE-LHGL 91 (156)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e-~~~l 91 (156)
..++..+...+......+ .........-...+..+...+..++..+..-..........+...-. .+..+... -..+
T Consensus 4 ~~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~ 83 (247)
T PF06705_consen 4 KSKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQI 83 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHh-HHHhHhhHHHHHHhhhHhhh
Q psy5576 92 KSELHGLKSELHGLKSELHGLKSELHGLKSELHG-LKSELHGLKSELHGLKSELG 145 (156)
Q Consensus 92 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~-l~~~~~~~~~~~~~l~~~~~ 145 (156)
......+...+..+..++..|...+......+.. +......+...+..+...+.
T Consensus 84 ~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~ 138 (247)
T PF06705_consen 84 SEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFE 138 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
No 472
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=21.65 E-value=3e+02 Score=19.50 Aligned_cols=144 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred CchhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHh
Q psy5576 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 80 (156)
Q Consensus 1 ~~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (156)
|-.-..+....+.+-.-++.-...+..-+..+.....++..+...+..+... .+..+...+...+...-..+..+-..
T Consensus 60 ~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d~--~~k~qa~~l~~~~~~ry~~~~~l~~~ 137 (204)
T PF10368_consen 60 KDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIEDE--KLKKQAKELNEAMKKRYKSYDKLYKA 137 (204)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------H--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhh
Q psy5576 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL 146 (156)
Q Consensus 81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~ 146 (156)
....-..-.++-.-+.+-......+...+..+......+......+..-.......-..+-...++
T Consensus 138 Y~~~l~~ekely~~L~~~d~~~~~l~~ki~~iN~~y~~~~~~~~~fn~~t~~yN~~K~~~y~~a~~ 203 (204)
T PF10368_consen 138 YKKALELEKELYEMLKDKDTTQKQLDEKIKAINQSYKEVNKQKEKFNEYTKKYNEEKQDFYKKAGL 203 (204)
T ss_dssp HHHHHHHHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 473
>KOG0614|consensus
Probab=21.39 E-value=4.5e+02 Score=22.20 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhh
Q psy5576 96 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNC 148 (156)
Q Consensus 96 ~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~ 148 (156)
..+++-+..++..+....+++..-+..+..+..++......+..+.++.+-++
T Consensus 20 ~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r 72 (732)
T KOG0614|consen 20 RELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLR 72 (732)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
No 474
>KOG3335|consensus
Probab=21.33 E-value=1.4e+02 Score=20.74 Aligned_cols=47 Identities=23% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhh
Q psy5576 99 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145 (156)
Q Consensus 99 ~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~ 145 (156)
+.++.++...+..|+.++.+++..++.+-+.+....+++..+...++
T Consensus 105 ~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el~~~~q~~p 151 (181)
T KOG3335|consen 105 KQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESELKPIRQAPP 151 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccCCC
No 475
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=21.32 E-value=1.5e+02 Score=15.82 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=0.0
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHh
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSE 38 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~ 38 (156)
|..-+..+..+...+..+......+...+..+..+
T Consensus 20 R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 20 RQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 476
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.28 E-value=2.9e+02 Score=19.15 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
...+..--..+...+..+ ........+|..|.+++..++..+..+-..+......+..+
T Consensus 4 ~~~L~~~d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 4 AEDLIEADDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=21.16 E-value=3.5e+02 Score=19.95 Aligned_cols=86 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhHHhHHHHHHHHHH-hHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHH
Q psy5576 12 DGLKSELHGLKSELHGLKSELHGLKS-ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 90 (156)
Q Consensus 12 ~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 90 (156)
+-+..+++.---.++.+-.++..+.. +..-++..++.++-+-..+...=.-.......+..+..+++.++..+..+++.
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~ 239 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDA 239 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh
Q psy5576 91 LKSELHG 97 (156)
Q Consensus 91 l~~~~~~ 97 (156)
+..++..
T Consensus 240 L~~e~~r 246 (289)
T COG4985 240 LRAELER 246 (289)
T ss_pred Hhhhhhh
No 478
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=21.14 E-value=3.6e+02 Score=20.19 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 86 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+...+......+......+..+...+.............+......+..+...+......+...+....+...-...--.
T Consensus 53 ~~~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~i 132 (327)
T TIGR02971 53 RTAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAV 132 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHH-----hHhhHHHHHHhhhHhhhhhhhhHhhhcC
Q psy5576 87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS-----ELHGLKSELHGLKSELGLNCYLTYFLFV 156 (156)
Q Consensus 87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 156 (156)
-..++......+......+......+...+......+..+.. .+......+..+...+...+.-.-...+
T Consensus 133 S~~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~~~~i 207 (327)
T TIGR02971 133 SASDLDSKALKLRTAEEELEEALASRSEQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLELTYV 207 (327)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcCEE
No 479
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=21.12 E-value=4.6e+02 Score=21.39 Aligned_cols=118 Identities=8% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 86 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+..|+..|..+.......+..+ +....................+..+...+......+..+.............+..
T Consensus 397 VA~EVr~LA~~t~~st~~I~~~---i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 473 (553)
T PRK15048 397 VAGEVRNLASRSAQAAKEIKAL---IEDSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVAL 473 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHH
Q psy5576 87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127 (156)
Q Consensus 87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~ 127 (156)
.+..+....................|......+...+..++
T Consensus 474 ~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~L~~~v~~fk 514 (553)
T PRK15048 474 AVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSAFR 514 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 480
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=21.01 E-value=3.1e+02 Score=19.31 Aligned_cols=116 Identities=8% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 84 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+.+...+.............+......+.............+......+..+...+..+.......-............+
T Consensus 147 ~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~i 226 (262)
T smart00283 147 KEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEI 226 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 120 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 120 (156)
......+.............+......|......++
T Consensus 227 ~~~~~~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 262 (262)
T smart00283 227 AQVTQETAAMSEEISAAAEELSGLAEELKELVEQFK 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 481
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=21.00 E-value=4.9e+02 Score=21.60 Aligned_cols=78 Identities=22% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHH--hHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHh
Q psy5576 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKS--ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 83 (156)
Q Consensus 6 ~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.....+..|.+++...+..++.+..-+..+.. -...-..-..+.+.........+-.+...+++.+.++..++..+..
T Consensus 407 e~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~~~~~~vnn~ki~l~~~ieki~~~l~~lqe~le~ 486 (543)
T COG1315 407 EIVERLKELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKESLLTAVNNTKITLRNSIEKIKAELEGLQEELEV 486 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHhh
No 482
>KOG3856|consensus
Probab=20.86 E-value=2.6e+02 Score=18.32 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576 88 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123 (156)
Q Consensus 88 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i 123 (156)
...+..+++++-+....++..+..|+.+|-.++...
T Consensus 12 ye~~kaEL~elikkrqe~eetl~nLe~qIY~~EgsY 47 (135)
T KOG3856|consen 12 YEDTKAELAELIKKRQELEETLANLERQIYAFEGSY 47 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 483
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=20.71 E-value=3.5e+02 Score=19.90 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHh---HHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHH
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHG---LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 77 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 77 (156)
..+..++..+..++..+...+...+..+...+.-+.. ...++.....++......+..+..++..+...+...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 135 (322)
T TIGR01730 60 DDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYT 135 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 484
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=20.31 E-value=2.1e+02 Score=17.00 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576 93 SELHGLKSELHGLKSELHGLKSELHGLKSEL 123 (156)
Q Consensus 93 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i 123 (156)
..+..+......++..+..++.+|-.++...
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~Y 32 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKETSY 32 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>KOG0353|consensus
Probab=20.28 E-value=2.7e+02 Score=22.25 Aligned_cols=47 Identities=19% Similarity=0.451 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhh
Q psy5576 102 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNC 148 (156)
Q Consensus 102 ~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~ 148 (156)
+..+..++..+..++..++.+|.++..+..++-.....+...+.+-|
T Consensus 6 ls~ls~el~~i~~ei~~id~qiqel~~kkqel~qkkk~i~kkielk~ 52 (695)
T KOG0353|consen 6 LSALSEELADIDGEIGAIDIQIQELREKKQELIQKKKAIEKKIELKC 52 (695)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 486
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=20.26 E-value=2e+02 Score=16.94 Aligned_cols=53 Identities=17% Similarity=0.388 Sum_probs=0.0
Q ss_pred HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhH
Q psy5576 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 60 (156)
...++++...+..+..++..++...+.+..+.......-......+......+
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a~s~ 76 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQAQSY 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
No 487
>PRK07737 fliD flagellar capping protein; Validated
Probab=20.26 E-value=4.9e+02 Score=21.34 Aligned_cols=55 Identities=7% Similarity=0.218 Sum_probs=0.0
Q ss_pred hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhH
Q psy5576 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 60 (156)
|...|..++..+..++..++..+...+..+ ..++..+..-+..+..+-.-+...+
T Consensus 442 ~~~~l~~~i~~l~~~i~~~~~rl~~~e~ry---~~qf~ale~~~s~mnsq~s~L~~~l 496 (501)
T PRK07737 442 QQFAIGKDLNQIETQIDRFQDRLKQIEDRY---YKKFSAMEKAIQKANEQSMYLMNAL 496 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
No 488
>PHA02047 phage lambda Rz1-like protein
Probab=20.09 E-value=2.3e+02 Score=17.59 Aligned_cols=44 Identities=9% Similarity=0.265 Sum_probs=0.0
Q ss_pred chhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhh
Q psy5576 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 45 (156)
Q Consensus 2 ~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (156)
++=.++.++++.++..+..++..+..++..-...+.++...-++
T Consensus 34 ~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~ 77 (101)
T PHA02047 34 EEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQ 77 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 489
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=20.02 E-value=4.3e+02 Score=20.56 Aligned_cols=141 Identities=22% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhh--------HhhHHhHHHhHHhhHHhHH--
Q psy5576 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL--------KSELHGLKSELHGLKSELH-- 75 (156)
Q Consensus 6 ~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l--------~~~~~~~~~~~~~~~~~~~-- 75 (156)
.|+.--......+......+...+..++...=.+..+..+...+...+... ...+...+.-....-..+.
T Consensus 2 ~Lk~~nR~~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~ 81 (355)
T PF09766_consen 2 ALKQLNRAAQFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDP 81 (355)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhcccc
Q ss_pred --HHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhh
Q psy5576 76 --GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL 146 (156)
Q Consensus 76 --~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~ 146 (156)
.......-+-..++-=-.+-..+.....++......+...+...+..+..+...+..+......++..+++
T Consensus 82 ~~~~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~ 154 (355)
T PF09766_consen 82 ELTEDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGL 154 (355)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Done!