Query psy5576
Match_columns 156
No_of_seqs 118 out of 796
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 21:01:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 98.6 1.2E-05 4.1E-10 57.8 17.9 125 9-133 18-144 (256)
2 3na7_A HP0958; flagellar bioge 98.3 0.00018 6.3E-09 51.6 18.5 47 7-53 30-76 (256)
3 3o0z_A RHO-associated protein 98.3 0.00024 8.2E-09 47.2 18.7 132 9-140 6-137 (168)
4 1i84_S Smooth muscle myosin he 98.1 2.8E-05 9.6E-10 66.7 10.7 38 10-47 858-895 (1184)
5 1i84_S Smooth muscle myosin he 98.1 2.6E-05 8.7E-10 67.0 10.4 87 6-92 861-947 (1184)
6 3o0z_A RHO-associated protein 97.9 0.0015 5.2E-08 43.4 19.3 128 7-134 11-138 (168)
7 2v71_A Nuclear distribution pr 97.8 0.0027 9.3E-08 43.2 18.8 27 48-74 53-79 (189)
8 2efr_A General control protein 97.6 0.0047 1.6E-07 40.7 19.8 108 42-149 47-154 (155)
9 3oja_B Anopheles plasmodium-re 97.6 0.0028 9.5E-08 50.4 13.8 56 87-142 524-579 (597)
10 3u1c_A Tropomyosin alpha-1 cha 97.4 0.0082 2.8E-07 36.8 13.8 85 26-110 12-96 (101)
11 3oja_B Anopheles plasmodium-re 97.3 0.0095 3.3E-07 47.4 14.1 122 15-136 455-580 (597)
12 2b9c_A Striated-muscle alpha t 97.3 0.016 5.5E-07 37.9 14.6 136 9-144 3-138 (147)
13 2efr_A General control protein 97.1 0.028 9.7E-07 37.0 19.8 108 35-142 26-133 (155)
14 3vkg_A Dynein heavy chain, cyt 96.8 0.33 1.1E-05 45.9 20.2 11 18-28 1936-1946(3245)
15 3swk_A Vimentin; cytoskeleton, 96.6 0.041 1.4E-06 32.6 9.9 13 111-123 67-79 (86)
16 3swk_A Vimentin; cytoskeleton, 96.5 0.049 1.7E-06 32.2 10.0 42 108-149 43-84 (86)
17 2b9c_A Striated-muscle alpha t 96.2 0.12 4.2E-06 33.7 13.4 87 52-138 53-139 (147)
18 2jee_A YIIU; FTSZ, septum, coi 96.2 0.078 2.7E-06 30.8 9.9 54 83-136 24-77 (81)
19 3ol1_A Vimentin; structural ge 96.0 0.14 4.9E-06 32.1 12.1 84 45-128 21-104 (119)
20 2e7s_A RAB guanine nucleotide 95.8 0.061 2.1E-06 34.4 7.5 32 49-80 44-75 (135)
21 3l4q_C Phosphatidylinositol 3- 95.6 0.28 9.4E-06 32.7 13.3 127 10-136 11-146 (170)
22 4gkw_A Spindle assembly abnorm 95.4 0.26 8.9E-06 31.2 18.1 114 10-123 12-135 (167)
23 3ol1_A Vimentin; structural ge 95.2 0.3 1E-05 30.6 13.7 43 5-47 16-58 (119)
24 2v4h_A NF-kappa-B essential mo 95.2 0.28 9.6E-06 30.1 10.5 21 101-121 84-104 (110)
25 2ocy_A RAB guanine nucleotide 95.1 0.39 1.3E-05 31.5 16.2 32 103-134 111-142 (154)
26 2v4h_A NF-kappa-B essential mo 94.7 0.4 1.4E-05 29.4 10.6 17 11-27 26-42 (110)
27 3ghg_A Fibrinogen alpha chain; 94.5 0.63 2.1E-05 36.4 10.8 16 7-22 62-77 (562)
28 3jsv_C NF-kappa-B essential mo 94.0 0.54 1.8E-05 28.0 8.5 39 87-125 48-86 (94)
29 3oja_A Leucine-rich immune mol 93.9 1.7 5.8E-05 33.6 14.9 45 87-131 429-473 (487)
30 2e7s_A RAB guanine nucleotide 93.7 0.82 2.8E-05 29.2 9.2 41 53-93 41-81 (135)
31 2v66_B Nuclear distribution pr 93.6 0.73 2.5E-05 28.4 14.4 20 28-47 8-27 (111)
32 2eqb_B RAB guanine nucleotide 93.3 0.77 2.6E-05 27.6 12.3 15 11-25 7-21 (97)
33 2xzr_A Immunoglobulin-binding 92.2 1.1 3.7E-05 26.7 14.5 20 131-150 86-105 (114)
34 3s4r_A Vimentin; alpha-helix, 92.2 1.1 3.8E-05 26.7 10.1 37 4-40 4-40 (93)
35 3l4q_C Phosphatidylinositol 3- 90.6 2.6 8.9E-05 28.0 13.7 120 17-143 11-139 (170)
36 2v66_B Nuclear distribution pr 90.6 1.9 6.6E-05 26.6 13.6 20 96-115 80-99 (111)
37 2ocy_A RAB guanine nucleotide 90.6 2.5 8.5E-05 27.7 18.1 17 111-127 112-128 (154)
38 4gkw_A Spindle assembly abnorm 90.1 2.4 8.2E-05 26.8 18.5 27 84-110 103-129 (167)
39 3mq7_A Bone marrow stromal ant 90.1 2.2 7.5E-05 26.4 12.6 18 46-63 41-58 (121)
40 1deq_A Fibrinogen (alpha chain 90.0 4.9 0.00017 30.2 11.2 21 7-27 65-85 (390)
41 3a7p_A Autophagy protein 16; c 89.3 3.1 0.00011 27.0 10.2 9 107-115 103-111 (152)
42 2i1j_A Moesin; FERM, coiled-co 88.7 0.55 1.9E-05 37.5 4.7 7 124-130 436-442 (575)
43 2xzr_A Immunoglobulin-binding 87.7 3 0.0001 24.8 14.7 37 91-127 67-103 (114)
44 3c9i_A Tail needle protein GP2 86.0 6.4 0.00022 26.9 10.1 60 85-144 90-149 (242)
45 4emc_A Monopolin complex subun 85.9 5.9 0.0002 26.7 7.7 8 108-115 49-56 (190)
46 3mq9_A Bone marrow stromal ant 85.7 10 0.00035 29.0 14.0 21 57-77 403-423 (471)
47 1jcd_A Major outer membrane li 85.5 2.7 9.3E-05 22.1 6.0 13 13-25 8-20 (52)
48 2nrj_A HBL B protein; enteroto 84.7 10 0.00035 28.1 12.1 37 4-40 118-154 (346)
49 3s4r_A Vimentin; alpha-helix, 84.4 4.6 0.00016 24.0 10.0 12 28-39 14-25 (93)
50 3mq7_A Bone marrow stromal ant 84.3 5.4 0.00019 24.6 11.1 12 84-95 76-87 (121)
51 2zdi_C Prefoldin subunit alpha 84.0 6.6 0.00022 25.3 8.6 35 1-35 1-35 (151)
52 2xdj_A Uncharacterized protein 83.0 5.1 0.00017 23.3 8.4 30 50-79 26-55 (83)
53 2xdj_A Uncharacterized protein 82.3 5.5 0.00019 23.2 8.6 28 100-127 27-54 (83)
54 1x79_B RAB GTPase binding effe 82.1 6.8 0.00023 24.1 11.9 19 77-95 50-68 (112)
55 3hhm_B NISH2 P85alpha; PI3KCA, 81.1 15 0.00052 27.6 14.2 15 33-47 143-157 (373)
56 3i00_A HIP-I, huntingtin-inter 80.5 8.3 0.00028 24.1 9.3 18 11-28 17-34 (120)
57 3hhm_B NISH2 P85alpha; PI3KCA, 80.1 17 0.00057 27.3 14.3 13 37-49 140-152 (373)
58 1m1j_A Fibrinogen alpha subuni 79.4 20 0.00067 27.7 12.3 32 7-38 63-94 (491)
59 1fxk_A Prefoldin; archaeal pro 79.2 7.9 0.00027 23.1 11.2 13 111-123 83-95 (107)
60 3mq9_A Bone marrow stromal ant 79.0 19 0.00066 27.5 14.0 19 116-134 445-463 (471)
61 2zqm_A Prefoldin beta subunit 78.1 9.2 0.00031 23.2 11.8 22 106-127 83-104 (117)
62 3uux_B Mitochondrial division 76.5 17 0.00058 25.5 10.1 10 125-134 209-218 (242)
63 2y3a_B Phosphatidylinositol 3- 75.2 21 0.00072 26.0 11.4 52 94-145 91-142 (302)
64 2ke4_A CDC42-interacting prote 75.0 11 0.00038 22.6 7.7 34 2-35 15-48 (98)
65 2oto_A M protein; helical coil 72.8 16 0.00056 23.6 17.7 13 19-31 32-44 (155)
66 1bb1_B Designed, thermostable 72.4 5.8 0.0002 18.2 3.7 30 123-152 4-33 (36)
67 1m1j_C Fibrinogen gamma chain; 72.2 30 0.001 26.3 12.7 36 88-123 93-128 (409)
68 1cii_A Colicin IA; bacteriocin 71.6 33 0.0011 26.6 13.3 38 46-83 358-395 (602)
69 2pnv_A Small conductance calci 70.0 8.8 0.0003 19.3 4.0 6 108-113 24-29 (43)
70 3uux_B Mitochondrial division 69.8 26 0.00088 24.6 10.2 66 55-120 153-218 (242)
71 3u06_A Protein claret segregat 69.7 14 0.00049 28.1 6.5 35 5-39 6-40 (412)
72 4e61_A Protein BIM1; EB1-like 69.0 17 0.00057 22.1 8.8 11 145-155 87-97 (106)
73 2l5g_B Putative uncharacterize 67.1 10 0.00034 18.9 4.4 19 112-130 14-32 (42)
74 2zdi_C Prefoldin subunit alpha 64.4 25 0.00086 22.5 8.6 39 102-140 100-138 (151)
75 1go4_E MAD1 (mitotic arrest de 61.4 24 0.00081 21.2 8.3 22 53-74 14-35 (100)
76 3fx0_A NF-kappa-B essential mo 61.2 4 0.00014 24.3 1.6 11 85-95 61-71 (96)
77 3ghg_B Fibrinogen beta chain; 59.3 60 0.002 25.1 12.4 22 103-124 166-187 (461)
78 1wle_A Seryl-tRNA synthetase; 58.6 64 0.0022 25.3 10.0 18 117-134 126-143 (501)
79 2dq0_A Seryl-tRNA synthetase; 58.2 62 0.0021 24.9 8.9 24 114-137 76-99 (455)
80 2y3a_B Phosphatidylinositol 3- 56.7 54 0.0018 23.8 11.2 53 12-64 14-66 (302)
81 3hd7_B Syntaxin-1A; membrane p 56.1 31 0.0011 20.9 10.3 59 78-136 20-78 (109)
82 3qne_A Seryl-tRNA synthetase, 53.8 77 0.0026 24.7 9.0 17 118-134 82-98 (485)
83 4dk0_A Putative MACA; alpha-ha 53.4 62 0.0021 23.5 9.7 19 10-28 71-89 (369)
84 3fx0_A NF-kappa-B essential mo 52.0 5 0.00017 23.9 0.9 30 17-46 18-47 (96)
85 1wt6_A Myotonin-protein kinase 50.1 34 0.0012 19.6 8.6 24 107-130 45-68 (81)
86 1d7m_A Cortexillin I; coiled-c 49.1 38 0.0013 19.8 13.9 14 92-105 73-86 (101)
87 1ses_A Seryl-tRNA synthetase; 49.1 85 0.0029 23.8 8.9 13 120-132 77-89 (421)
88 2c5k_T Syntaxin TLG1, T-snare 47.5 42 0.0014 19.8 5.0 25 63-87 66-90 (95)
89 2q6q_A Spindle POLE BODY compo 47.0 35 0.0012 18.8 7.6 49 84-132 15-63 (74)
90 3cl3_D NF-kappa-B essential mo 47.0 51 0.0017 20.7 7.0 37 17-53 10-46 (130)
91 3a5t_A Transcription factor MA 45.4 16 0.00053 22.3 2.4 40 109-148 60-99 (107)
92 2wt7_B Transcription factor MA 45.0 46 0.0016 19.5 9.6 14 61-74 24-37 (90)
93 4g1a_A AQ-C16C19 peptide; heli 44.5 20 0.0007 15.9 2.1 24 12-35 3-26 (32)
94 4dyl_A Tyrosine-protein kinase 44.1 1E+02 0.0034 23.2 9.8 35 4-38 304-338 (406)
95 2yo3_A General control protein 42.9 56 0.0019 23.3 5.3 18 132-149 241-258 (268)
96 2lf0_A Uncharacterized protein 42.8 58 0.002 20.1 5.6 17 8-24 9-25 (123)
97 3c9i_A Tail needle protein GP2 37.7 96 0.0033 21.2 14.3 41 88-128 107-147 (242)
98 3tq7_B Microtubule-associated 37.2 60 0.002 18.7 4.8 49 107-155 8-57 (82)
99 1fxk_C Protein (prefoldin); ar 37.0 73 0.0025 19.6 11.4 41 100-140 88-128 (133)
100 2qih_A Protein USPA1; trimeric 35.5 85 0.0029 19.9 17.4 35 100-134 96-130 (157)
101 2xv5_A Lamin-A/C; structural p 34.2 64 0.0022 18.1 7.6 9 119-127 45-53 (74)
102 3mtu_A Tropomyosin alpha-1 cha 32.6 68 0.0023 18.0 5.8 23 7-29 7-29 (75)
103 3sjb_C Golgi to ER traffic pro 32.2 80 0.0027 18.6 4.1 47 10-56 24-75 (93)
104 4dzo_A Mitotic spindle assembl 32.0 92 0.0032 19.3 5.5 33 9-41 4-36 (123)
105 1txp_A HnRNP C, heterogeneous 31.8 40 0.0014 15.0 2.2 15 7-21 4-18 (28)
106 1ez3_A Syntaxin-1A; three heli 31.5 88 0.003 18.9 11.9 22 124-145 98-119 (127)
107 2ve7_C Kinetochore protein NUF 30.8 92 0.0032 21.8 4.9 53 88-140 150-202 (250)
108 3vmx_A Voltage-gated hydrogen 30.6 59 0.002 16.6 5.9 30 96-125 7-36 (48)
109 3lss_A Seryl-tRNA synthetase; 29.3 2E+02 0.0069 22.4 9.1 13 103-115 121-133 (484)
110 2ic6_A Nucleocapsid protein; h 29.0 84 0.0029 17.9 7.9 8 14-21 10-17 (78)
111 2ic9_A Nucleocapsid protein; h 28.6 96 0.0033 18.4 7.9 11 13-23 9-19 (96)
112 1a92_A Delta antigen; leucine 28.3 66 0.0022 16.4 4.3 34 120-153 13-46 (50)
113 3lss_A Seryl-tRNA synthetase; 28.1 2.1E+02 0.0073 22.2 9.2 20 117-136 114-133 (484)
114 3he5_B Synzip2; heterodimeric 27.7 62 0.0021 16.0 6.1 31 9-39 10-40 (52)
115 1s94_A S-syntaxin; three helix 27.5 1.3E+02 0.0044 19.6 10.0 21 124-144 129-149 (180)
116 1dip_A Delta-sleep-inducing pe 25.6 80 0.0027 17.7 3.0 25 7-31 13-37 (78)
117 1kd8_A GABH AIV, GCN4 acid bas 25.6 63 0.0022 15.3 4.3 24 13-36 5-28 (36)
118 1xaw_A Occludin; coiled-coil, 24.0 1.5E+02 0.005 18.9 10.7 34 6-39 49-82 (140)
119 3rrk_A V-type ATPase 116 kDa s 22.9 2.2E+02 0.0075 20.6 7.1 25 103-127 229-253 (357)
120 3tul_A Cell invasion protein S 22.7 1.6E+02 0.0055 18.9 12.1 8 66-73 77-84 (158)
121 1kd8_B GABH BLL, GCN4 acid bas 22.6 74 0.0025 15.1 4.7 21 13-33 5-25 (36)
122 2pms_C Pneumococcal surface pr 22.5 1.5E+02 0.0051 18.5 9.3 16 15-30 12-27 (125)
123 1j1d_C Troponin I, TNI; THIN f 20.6 1.7E+02 0.0058 18.4 6.1 43 49-91 63-105 (133)
124 2p22_A Suppressor protein STP2 20.5 1.9E+02 0.0066 19.1 13.1 51 100-150 115-165 (174)
125 1ytz_T Troponin T; muscle, THI 20.4 1.5E+02 0.0052 17.9 5.6 30 60-89 58-87 (107)
126 1rtm_1 Mannose-binding protein 20.3 97 0.0033 19.1 3.2 18 8-25 3-20 (149)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.61 E-value=1.2e-05 Score=57.82 Aligned_cols=125 Identities=19% Similarity=0.266 Sum_probs=71.7
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHH--hHHhhHH
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS--ELHGLKS 86 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 86 (156)
.+|..+...+..++..+..+...+..+...+..+...+..+...+..++..+......+...+..+..... ++..+..
T Consensus 18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~k 97 (256)
T 3na7_A 18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI 97 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 45555556666666666666666666666666666666666666666666666666666666655544322 4555555
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhH
Q psy5576 87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 133 (156)
Q Consensus 87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~ 133 (156)
++..+...+..+...+..+...+..+...+..+...+..+...+...
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~ 144 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555554444444444333
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.35 E-value=0.00018 Score=51.60 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=19.5
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhh
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 53 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 53 (156)
+-.++..+...+..+...+..+...+..+...+..+...+......+
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri 76 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKI 76 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443333333333
No 3
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=98.28 E-value=0.00024 Score=47.23 Aligned_cols=132 Identities=16% Similarity=0.174 Sum_probs=71.5
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 88 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 88 (156)
..+..|..++.++...+..-......+++...++...+........++...+..+......+..++..+...+..-....
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r 85 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDR 85 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666655555555544444
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
......+.+++..+..+..++..+.........+...+...+..+..+...+
T Consensus 86 ~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 86 GHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444555555555555555555544444444444444444444444433
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.07 E-value=2.8e-05 Score=66.73 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=14.7
Q ss_pred hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHH
Q psy5576 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 47 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 47 (156)
++..+..++..+...+..++..+..+...+..+..+..
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~ 895 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKN 895 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333333333333333333333
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.06 E-value=2.6e-05 Score=67.00 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=44.6
Q ss_pred HHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhH
Q psy5576 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 85 (156)
Q Consensus 6 ~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
.++.++..+...+..+...+..++..+..+..+...+...+......+......+..+..++..+...+..+..++....
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~e 940 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE 940 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666655555555554444444444444444444444444444443333
Q ss_pred HHHHHHH
Q psy5576 86 SELHGLK 92 (156)
Q Consensus 86 ~e~~~l~ 92 (156)
..+..+.
T Consensus 941 e~l~el~ 947 (1184)
T 1i84_S 941 ERSQQLQ 947 (1184)
T ss_dssp HC-----
T ss_pred HHHHHHH
Confidence 3333333
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.93 E-value=0.0015 Score=43.41 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=61.8
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 86 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|.++++++...+..-......+.+....+......+...+.++...+..+......+..++..+...+..-+........
T Consensus 11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555555555555555555555555555555555555555555555555555555444444443333333
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576 87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 134 (156)
Q Consensus 87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~ 134 (156)
-+.++...+..+..++..+......+..+...+...+..+.+....+.
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444444444444444444444444444444443
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.83 E-value=0.0027 Score=43.16 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=10.5
Q ss_pred hHHHhhhhhHhhHHhHHHhHHhhHHhH
Q psy5576 48 GLKSELHGLKSELHGLKSELHGLKSEL 74 (156)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (156)
.+.....++......+..++..++..+
T Consensus 53 ~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 53 QAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444433333333
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.65 E-value=0.0047 Score=40.70 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=54.2
Q ss_pred HHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5576 42 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121 (156)
Q Consensus 42 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 121 (156)
+...+......+..+...-......-..++.++..+...+.............+..++..+..++..+..-......+..
T Consensus 47 LEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~ 126 (155)
T 2efr_A 47 LEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISE 126 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444445555554444444444444555555555555555555555555555555
Q ss_pred hHHhHHHhHhhHHHHHHhhhHhhhhhhh
Q psy5576 122 ELHGLKSELHGLKSELHGLKSELGLNCY 149 (156)
Q Consensus 122 ~i~~l~~~~~~~~~~~~~l~~~~~~~~~ 149 (156)
.+...-..+..+......+.+++..+++
T Consensus 127 eLd~tl~el~~~~~~~~~~~~~~~~~~~ 154 (155)
T 2efr_A 127 EMKQLEDKVEELLSKNYHLENEVARLKK 154 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhc
Confidence 5555555555555555556666555554
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.55 E-value=0.0028 Score=50.45 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhH
Q psy5576 87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 142 (156)
Q Consensus 87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~ 142 (156)
+.......+.........++.+...++..+...+..+.+++.+......++..+.+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334333444444444444444444444444444444444433
No 10
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.37 E-value=0.0082 Score=36.77 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=33.9
Q ss_pred HhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHH
Q psy5576 26 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 105 (156)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l 105 (156)
..++............+...+............++..+...+..++.++......+......+.............+..+
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333334444444444444444444444444444433333333333333333444444
Q ss_pred HHHHH
Q psy5576 106 KSELH 110 (156)
Q Consensus 106 ~~~l~ 110 (156)
..++.
T Consensus 92 ~Rriq 96 (101)
T 3u1c_A 92 NRRIQ 96 (101)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.31 E-value=0.0095 Score=47.36 Aligned_cols=122 Identities=20% Similarity=0.253 Sum_probs=56.7
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhh----hhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHH
Q psy5576 15 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH----GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 90 (156)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 90 (156)
..++..+...+..++.+.......+......+......+. ++......+...+..+....+........+...++.
T Consensus 455 ~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADA 534 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 3344444444444444444444444444444333333222 222222334444444444444444444555555555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHH
Q psy5576 91 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 136 (156)
Q Consensus 91 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~ 136 (156)
.......++.++..++..+...+..+.++..++..+..++..+...
T Consensus 535 ~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 535 KQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555443
No 12
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=97.26 E-value=0.016 Score=37.91 Aligned_cols=136 Identities=14% Similarity=0.150 Sum_probs=59.7
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 88 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 88 (156)
+.|.-+..+++.....+.....++..+....+........+...-..-...+..+..++.....-.......+......+
T Consensus 3 Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl 82 (147)
T 2b9c_A 3 RRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKL 82 (147)
T ss_dssp --------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44555555555555555555666665555555554444444444333334444444444444444444444444444444
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
.-+...+.............+..|..++..+.+.+..+...-......-..+...+
T Consensus 83 ~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I 138 (147)
T 2b9c_A 83 VIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV 138 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444433333333333333333
No 13
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.06 E-value=0.028 Score=36.97 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=72.6
Q ss_pred HHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5576 35 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 114 (156)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~ 114 (156)
+...+.............+..+..++......+..++..-.........+..+|..+...++.........+..+..|+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666666666666666666666666666666666666777777777777777777777777777777777
Q ss_pred HHHhHHHhHHhHHHhHhhHHHHHHhhhH
Q psy5576 115 ELHGLKSELHGLKSELHGLKSELHGLKS 142 (156)
Q Consensus 115 ~~~~~~~~i~~l~~~~~~~~~~~~~l~~ 142 (156)
.++.+...+...+.....+...+...-.
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~ 133 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMKQLED 133 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766666666666655433
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.77 E-value=0.33 Score=45.95 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=3.9
Q ss_pred HHHHHHhHHhH
Q psy5576 18 LHGLKSELHGL 28 (156)
Q Consensus 18 l~~~~~~~~~~ 28 (156)
++.++.++...
T Consensus 1936 V~~l~~~L~~~ 1946 (3245)
T 3vkg_A 1936 VKDLQVSLAQK 1946 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 15
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=96.64 E-value=0.041 Score=32.59 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=4.8
Q ss_pred HHHHHHHhHHHhH
Q psy5576 111 GLKSELHGLKSEL 123 (156)
Q Consensus 111 ~l~~~~~~~~~~i 123 (156)
.|+.++..+..+|
T Consensus 67 dLE~kvesL~eEl 79 (86)
T 3swk_A 67 DLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 16
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=96.53 E-value=0.049 Score=32.21 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhh
Q psy5576 108 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCY 149 (156)
Q Consensus 108 ~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~ 149 (156)
....+++.+..+...+....-...++...++.+..++..+++
T Consensus 43 ~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 43 QREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445555555555555555555555666666665555554
No 17
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=96.24 E-value=0.12 Score=33.69 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=35.0
Q ss_pred hhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHh
Q psy5576 52 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 131 (156)
Q Consensus 52 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~ 131 (156)
.+..+..++.....-..............+..+..++.............+..++..+..+.+.+..+...-......-.
T Consensus 53 r~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~ 132 (147)
T 2b9c_A 53 KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNY 132 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Confidence 33333333333333333333333333333333444444444444444444444444444444444444444444443333
Q ss_pred hHHHHHH
Q psy5576 132 GLKSELH 138 (156)
Q Consensus 132 ~~~~~~~ 138 (156)
.+...+.
T Consensus 133 ~yee~I~ 139 (147)
T 2b9c_A 133 HLENEVA 139 (147)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3433333
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.18 E-value=0.078 Score=30.82 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHH
Q psy5576 83 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 136 (156)
Q Consensus 83 ~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~ 136 (156)
-++.+++.+......+..+...+......+..+...+..+...+..++..+-..
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333334444444444444444444444444444444444433
No 19
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.98 E-value=0.14 Score=32.10 Aligned_cols=84 Identities=15% Similarity=0.270 Sum_probs=41.2
Q ss_pred hHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHH
Q psy5576 45 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124 (156)
Q Consensus 45 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~ 124 (156)
.+..++.++..+..+-..+..++.++......++..+..-......++..+..+...+....-....|+.++..+..+|.
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433333334444445555555555554455555555566666655
Q ss_pred hHHH
Q psy5576 125 GLKS 128 (156)
Q Consensus 125 ~l~~ 128 (156)
.++.
T Consensus 101 FLKk 104 (119)
T 3ol1_A 101 FLKK 104 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 20
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.83 E-value=0.061 Score=34.41 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=11.6
Q ss_pred HHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHh
Q psy5576 49 LKSELHGLKSELHGLKSELHGLKSELHGLKSE 80 (156)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (156)
....+..+...+..-.......+.....+..+
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E 75 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKE 75 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 21
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=95.63 E-value=0.28 Score=32.75 Aligned_cols=127 Identities=15% Similarity=0.231 Sum_probs=58.9
Q ss_pred hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhH---------HHHHHh
Q psy5576 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL---------HGLKSE 80 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~ 80 (156)
.++.+...+..+..+.......++.+-.++.....++...+..+.+....+.-++.++...+.-- .....+
T Consensus 11 ~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E 90 (170)
T 3l4q_C 11 SVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKE 90 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHH
Confidence 35555556666666666666666666666655555555555555555544444444432221100 000012
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHH
Q psy5576 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 136 (156)
Q Consensus 81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~ 136 (156)
+..+..-...+...+..+......+...+.......-.++.++..++-++..+...
T Consensus 91 ~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~ 146 (170)
T 3l4q_C 91 MQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKI 146 (170)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 22333333344444444444444444444444444444555555555444444433
No 22
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=95.43 E-value=0.26 Score=31.18 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=64.0
Q ss_pred hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH---
Q psy5576 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS--- 86 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 86 (156)
.|.+|...+..+...+.+.+..+.-.-.-+.+-...+..++..-.....++..++.+...+...+......+.....
T Consensus 12 ~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQn 91 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQN 91 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHh
Confidence 35666677777777777777776666666666666777776666666666777766666665555544443332222
Q ss_pred -------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576 87 -------ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123 (156)
Q Consensus 87 -------e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i 123 (156)
.+.++.+.++....-+..+..-+..|..++..-.-.+
T Consensus 92 QQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~ 135 (167)
T 4gkw_A 92 QQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKA 135 (167)
T ss_dssp HHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444444444444444444444444444333333
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.23 E-value=0.3 Score=30.64 Aligned_cols=43 Identities=16% Similarity=0.336 Sum_probs=24.4
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHH
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 47 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 47 (156)
.-|...|..|+.+|..+...-..+.-++..+...++....++.
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE 58 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3455566666666666666555555555555555555544444
No 24
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=95.18 E-value=0.28 Score=30.07 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q psy5576 101 ELHGLKSELHGLKSELHGLKS 121 (156)
Q Consensus 101 ~~~~l~~~l~~l~~~~~~~~~ 121 (156)
....+..+...|..++..+..
T Consensus 84 dREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 84 AREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 25
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.14 E-value=0.39 Score=31.48 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576 103 HGLKSELHGLKSELHGLKSELHGLKSELHGLK 134 (156)
Q Consensus 103 ~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~ 134 (156)
..++.+...|..++.+.+.-+..+...+..+.
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444443
No 26
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=94.70 E-value=0.4 Score=29.40 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=6.4
Q ss_pred HHhHHHHHHHHHHhHHh
Q psy5576 11 LDGLKSELHGLKSELHG 27 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~ 27 (156)
++.|...+...+..+..
T Consensus 26 i~~L~~~L~~AEeaL~~ 42 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVA 42 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 27
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=94.52 E-value=0.63 Score=36.36 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=7.0
Q ss_pred HHhhHHhHHHHHHHHH
Q psy5576 7 RKSELDGLKSELHGLK 22 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~ 22 (156)
+++.|++|+.+++++.
T Consensus 62 ltkrINELKnqLEdls 77 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 28
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=93.97 E-value=0.54 Score=28.01 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHh
Q psy5576 87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 125 (156)
Q Consensus 87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~ 125 (156)
.+.-+..++..=......+..+...|..++..+...+..
T Consensus 48 Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 48 QADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444444444333
No 29
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.93 E-value=1.7 Score=33.59 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHh
Q psy5576 87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 131 (156)
Q Consensus 87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~ 131 (156)
++.......+.++.++..+.++...++..+.+++..+.+....+.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 333333333333444444434333444444444444433333333
No 30
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.70 E-value=0.82 Score=29.22 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=17.5
Q ss_pred hhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHH
Q psy5576 53 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 93 (156)
Q Consensus 53 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~ 93 (156)
+.....++..+...+..-.............+..+++++..
T Consensus 41 l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 41 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 81 (135)
T ss_dssp TTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444433
No 31
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.63 E-value=0.73 Score=28.45 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhHHhHHhhHH
Q psy5576 28 LKSELHGLKSELHGLKSELH 47 (156)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~ 47 (156)
+......+..+++.+..++.
T Consensus 8 L~~~~~~L~~E~e~~k~K~~ 27 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLE 27 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 32
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.27 E-value=0.77 Score=27.58 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=5.7
Q ss_pred HHhHHHHHHHHHHhH
Q psy5576 11 LDGLKSELHGLKSEL 25 (156)
Q Consensus 11 i~~l~~~l~~~~~~~ 25 (156)
++.++.++..+...+
T Consensus 7 ~e~lre~l~~le~~~ 21 (97)
T 2eqb_B 7 YNQLKEDYNTLKREL 21 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 33
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=92.21 E-value=1.1 Score=26.70 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=7.9
Q ss_pred hhHHHHHHhhhHhhhhhhhh
Q psy5576 131 HGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~ 150 (156)
..+-+..-.+.+++..++++
T Consensus 86 aaLlsk~yh~ene~ar~kkl 105 (114)
T 2xzr_A 86 EEILSKIYHIENEIARIKKL 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 33333333344444444443
No 34
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=92.17 E-value=1.1 Score=26.71 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=21.9
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHH
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELH 40 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 40 (156)
|..-+.+|..|...++..-.++..++..=..+..++.
T Consensus 4 R~~EKe~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~ 40 (93)
T 3s4r_A 4 RTNEKVELQELNDRFANLIDKVRFLEQQNKILLAELE 40 (93)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777776666666666555544443
No 35
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=90.64 E-value=2.6 Score=28.04 Aligned_cols=120 Identities=14% Similarity=0.222 Sum_probs=56.7
Q ss_pred HHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHh---------HHhhHHH
Q psy5576 17 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE---------LHGLKSE 87 (156)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~e 87 (156)
.++.+-..+..+...+.....+++.+-+.+..+...+.-....+......+.-++.+......- ..+-.-+
T Consensus 11 ~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E 90 (170)
T 3l4q_C 11 SVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKE 90 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHH
Confidence 3455555555555555555555555555555555555555555555555555555444222210 0111113
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHh
Q psy5576 88 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 143 (156)
Q Consensus 88 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~ 143 (156)
+..+..... .+...+..+......+...+.........+.++++++.-.
T Consensus 91 ~~~l~~N~e-------~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPe 139 (170)
T 3l4q_C 91 MQRILLNSE-------RLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPD 139 (170)
T ss_dssp TTTTTHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 344444443 4444444444444444444444444444444444444433
No 36
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.63 E-value=1.9 Score=26.55 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=7.2
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q psy5576 96 HGLKSELHGLKSELHGLKSE 115 (156)
Q Consensus 96 ~~~~~~~~~l~~~l~~l~~~ 115 (156)
.++...+...-.+..-|+.+
T Consensus 80 eD~E~k~n~aiErnalLE~E 99 (111)
T 2v66_B 80 EDFEQRLNQAIERNAFLESE 99 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 37
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.56 E-value=2.5 Score=27.67 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=6.2
Q ss_pred HHHHHHHhHHHhHHhHH
Q psy5576 111 GLKSELHGLKSELHGLK 127 (156)
Q Consensus 111 ~l~~~~~~~~~~i~~l~ 127 (156)
.++.+...+...+.+..
T Consensus 112 ~~e~r~~~L~~ql~e~~ 128 (154)
T 2ocy_A 112 AIEILNKRLTEQLREKD 128 (154)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 38
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.14 E-value=2.4 Score=26.82 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5576 84 LKSELHGLKSELHGLKSELHGLKSELH 110 (156)
Q Consensus 84 ~~~e~~~l~~~~~~~~~~~~~l~~~l~ 110 (156)
++..+.+-..-...+...+.-+..+++
T Consensus 103 LEADLKEKDsMVe~LT~TiG~LrKELE 129 (167)
T 4gkw_A 103 LEADLKEKDSMVESLTETIGILRKELE 129 (167)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444333
No 39
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=90.09 E-value=2.2 Score=26.35 Aligned_cols=18 Identities=6% Similarity=0.193 Sum_probs=6.4
Q ss_pred HHhHHHhhhhhHhhHHhH
Q psy5576 46 LHGLKSELHGLKSELHGL 63 (156)
Q Consensus 46 l~~~~~~~~~l~~~~~~~ 63 (156)
+.....+.......+..+
T Consensus 41 l~~~eaQAaTCNqTV~tL 58 (121)
T 3mq7_A 41 FQDVEAQAATANHTVMAL 58 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.99 E-value=4.9 Score=30.17 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=9.0
Q ss_pred HHhhHHhHHHHHHHHHHhHHh
Q psy5576 7 RKSELDGLKSELHGLKSELHG 27 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~ 27 (156)
++..|+.|...|..+......
T Consensus 65 ~~~rIe~L~~~L~~~s~s~~~ 85 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKNSKD 85 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhhH
Confidence 344444444444444433333
No 41
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.35 E-value=3.1 Score=27.04 Aligned_cols=9 Identities=22% Similarity=0.032 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy5576 107 SELHGLKSE 115 (156)
Q Consensus 107 ~~l~~l~~~ 115 (156)
.++..|..+
T Consensus 103 DEl~aLqlq 111 (152)
T 3a7p_A 103 AALISGTIE 111 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 42
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=88.68 E-value=0.55 Score=37.45 Aligned_cols=7 Identities=29% Similarity=0.510 Sum_probs=0.4
Q ss_pred HhHHHhH
Q psy5576 124 HGLKSEL 130 (156)
Q Consensus 124 ~~l~~~~ 130 (156)
..+..++
T Consensus 436 ~~~~~~~ 442 (575)
T 2i1j_A 436 RRLQEEV 442 (575)
T ss_dssp ------C
T ss_pred HHHHHHH
Confidence 3333333
No 43
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=87.67 E-value=3 Score=24.81 Aligned_cols=37 Identities=11% Similarity=0.319 Sum_probs=16.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHH
Q psy5576 91 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127 (156)
Q Consensus 91 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~ 127 (156)
....+.+.-+++..++.+.+.|-..+..+++++..++
T Consensus 67 qQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~k 103 (114)
T 2xzr_A 67 QQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIK 103 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333333334444444444445445555555554444
No 44
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=86.03 E-value=6.4 Score=26.91 Aligned_cols=60 Identities=10% Similarity=0.290 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~ 144 (156)
..++.+.+..+......+..++-++...+..+..++..+..+..++......+..++..|
T Consensus 90 ~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~Dy 149 (242)
T 3c9i_A 90 RIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADY 149 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred hcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhh
Confidence 333333344444444444444444455555555555555555555555555555555544
No 45
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=85.89 E-value=5.9 Score=26.69 Aligned_cols=8 Identities=13% Similarity=0.538 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy5576 108 ELHGLKSE 115 (156)
Q Consensus 108 ~l~~l~~~ 115 (156)
++..++++
T Consensus 49 ql~sl~~~ 56 (190)
T 4emc_A 49 QIDSLNAQ 56 (190)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 33333333
No 46
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=85.66 E-value=10 Score=28.99 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=8.6
Q ss_pred HhhHHhHHHhHHhhHHhHHHH
Q psy5576 57 KSELHGLKSELHGLKSELHGL 77 (156)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~ 77 (156)
+.++.+.+..+.+++.+....
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~ 423 (471)
T 3mq9_A 403 QQELTEAQKGFQDVEAQAATA 423 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhc
Confidence 334444444444444443333
No 47
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=85.45 E-value=2.7 Score=22.14 Aligned_cols=13 Identities=8% Similarity=0.064 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHhH
Q psy5576 13 GLKSELHGLKSEL 25 (156)
Q Consensus 13 ~l~~~l~~~~~~~ 25 (156)
.|..+++.+..++
T Consensus 8 ~Lss~V~~L~~kV 20 (52)
T 1jcd_A 8 QASSDAQTANAKA 20 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 48
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=84.70 E-value=10 Score=28.13 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=24.3
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHH
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELH 40 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 40 (156)
+..++.-|..|...+...+.....+...+..++..+.
T Consensus 118 ~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~ 154 (346)
T 2nrj_A 118 GETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIG 154 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777766666666666666554
No 49
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.44 E-value=4.6 Score=23.96 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=4.4
Q ss_pred HHHHHHHHHHhH
Q psy5576 28 LKSELHGLKSEL 39 (156)
Q Consensus 28 ~~~~~~~~~~~~ 39 (156)
+...+...-..+
T Consensus 14 LNdRlAsyIdKV 25 (93)
T 3s4r_A 14 LNDRFANLIDKV 25 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 50
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.28 E-value=5.4 Score=24.62 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=4.4
Q ss_pred hHHHHHHHHHHH
Q psy5576 84 LKSELHGLKSEL 95 (156)
Q Consensus 84 ~~~e~~~l~~~~ 95 (156)
++.+|..++..+
T Consensus 76 LqgEI~~Lnq~L 87 (121)
T 3mq7_A 76 LEGEITTLNHKL 87 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 51
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=83.99 E-value=6.6 Score=25.34 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=17.5
Q ss_pred CchhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHH
Q psy5576 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGL 35 (156)
Q Consensus 1 ~~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~ 35 (156)
|+|=+++..++..+...+..+...+..+...+..+
T Consensus 1 ~~~m~~~~~~l~ql~~~~qql~~~~~~l~~~~~~L 35 (151)
T 2zdi_C 1 MIRMAQNNKELEKLAYEYQVLQAQAQILAQNLELL 35 (151)
T ss_dssp ---CCSSTTHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555
No 52
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=83.01 E-value=5.1 Score=23.29 Aligned_cols=30 Identities=13% Similarity=0.325 Sum_probs=12.0
Q ss_pred HHhhhhhHhhHHhHHHhHHhhHHhHHHHHH
Q psy5576 50 KSELHGLKSELHGLKSELHGLKSELHGLKS 79 (156)
Q Consensus 50 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (156)
..++..+..++..++..++....++..+..
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333333444444444444444444433333
No 53
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=82.26 E-value=5.5 Score=23.15 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHhHH
Q psy5576 100 SELHGLKSELHGLKSELHGLKSELHGLK 127 (156)
Q Consensus 100 ~~~~~l~~~l~~l~~~~~~~~~~i~~l~ 127 (156)
..+..+..++..|...+.....++..+.
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 54
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=82.15 E-value=6.8 Score=24.14 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=6.8
Q ss_pred HHHhHHhhHHHHHHHHHHH
Q psy5576 77 LKSELHGLKSELHGLKSEL 95 (156)
Q Consensus 77 ~~~~~~~~~~e~~~l~~~~ 95 (156)
+......-+..+..+...+
T Consensus 50 L~~~~q~sE~~L~~Lqq~f 68 (112)
T 1x79_B 50 LVLRAQASEILLEELQQGL 68 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 55
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=81.15 E-value=15 Score=27.55 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=5.4
Q ss_pred HHHHHhHHhHHhhHH
Q psy5576 33 HGLKSELHGLKSELH 47 (156)
Q Consensus 33 ~~~~~~~~~~~~~l~ 47 (156)
..+..++....+++.
T Consensus 143 ~~~~~~~~~~~~e~~ 157 (373)
T 3hhm_B 143 DRLYEEYTRTSQEIQ 157 (373)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHH
Confidence 333333333333333
No 56
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=80.47 E-value=8.3 Score=24.06 Aligned_cols=18 Identities=33% Similarity=0.678 Sum_probs=7.7
Q ss_pred HHhHHHHHHHHHHhHHhH
Q psy5576 11 LDGLKSELHGLKSELHGL 28 (156)
Q Consensus 11 i~~l~~~l~~~~~~~~~~ 28 (156)
|+.|..++..+...+..+
T Consensus 17 Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 17 IERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 57
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=80.08 E-value=17 Score=27.34 Aligned_cols=13 Identities=23% Similarity=0.153 Sum_probs=4.7
Q ss_pred HhHHhHHhhHHhH
Q psy5576 37 SELHGLKSELHGL 49 (156)
Q Consensus 37 ~~~~~~~~~l~~~ 49 (156)
.+.+.+-..+..+
T Consensus 140 ~~~~~~~~~~~~~ 152 (373)
T 3hhm_B 140 REYDRLYEEYTRT 152 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHhccc
Confidence 3333333333333
No 58
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=79.36 E-value=20 Score=27.72 Aligned_cols=32 Identities=6% Similarity=0.105 Sum_probs=14.1
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHh
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSE 38 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~ 38 (156)
+++.|++|+..+..+.........-+..+...
T Consensus 63 v~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~ 94 (491)
T 1m1j_A 63 YSQRIDNIRQQLADSQNKYKTSNRVIVETINI 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 44455555555555444443333333333333
No 59
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=79.23 E-value=7.9 Score=23.12 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=4.7
Q ss_pred HHHHHHHhHHHhH
Q psy5576 111 GLKSELHGLKSEL 123 (156)
Q Consensus 111 ~l~~~~~~~~~~i 123 (156)
.+..++..+...+
T Consensus 83 ~le~~~~~~~~~l 95 (107)
T 1fxk_A 83 TIERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 60
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=79.01 E-value=19 Score=27.45 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=7.4
Q ss_pred HHhHHHhHHhHHHhHhhHH
Q psy5576 116 LHGLKSELHGLKSELHGLK 134 (156)
Q Consensus 116 ~~~~~~~i~~l~~~~~~~~ 134 (156)
+.+++.+|..+.+++.+.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 61
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=78.13 E-value=9.2 Score=23.23 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhHHHhHHhHH
Q psy5576 106 KSELHGLKSELHGLKSELHGLK 127 (156)
Q Consensus 106 ~~~l~~l~~~~~~~~~~i~~l~ 127 (156)
...+..+..++..+...+.+++
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 62
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=76.49 E-value=17 Score=25.48 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=3.6
Q ss_pred hHHHhHhhHH
Q psy5576 125 GLKSELHGLK 134 (156)
Q Consensus 125 ~l~~~~~~~~ 134 (156)
.+...+..+.
T Consensus 209 ~LE~eL~~V~ 218 (242)
T 3uux_B 209 LLEDNLKQID 218 (242)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 63
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=75.24 E-value=21 Score=25.95 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=30.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhh
Q psy5576 94 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145 (156)
Q Consensus 94 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~ 145 (156)
++..+......+...+..|-.-...++.++...+.+.-.+.+.+..+.-.+-
T Consensus 91 e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~ier~ln~~~pdw~ 142 (302)
T 2y3a_B 91 EMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKRMNSLKPDLM 142 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhHHhhhccCChHHH
Confidence 3444444555555566666666666666666666666666666655554443
No 64
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=74.97 E-value=11 Score=22.57 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=21.8
Q ss_pred chhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHH
Q psy5576 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGL 35 (156)
Q Consensus 2 ~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~ 35 (156)
+||..|...|..+..+|......-..+.+-....
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY 48 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVY 48 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777766655555544443
No 65
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=72.77 E-value=16 Score=23.57 Aligned_cols=13 Identities=23% Similarity=0.256 Sum_probs=4.9
Q ss_pred HHHHHhHHhHHHH
Q psy5576 19 HGLKSELHGLKSE 31 (156)
Q Consensus 19 ~~~~~~~~~~~~~ 31 (156)
..+......+...
T Consensus 32 ~~Lk~e~e~l~~~ 44 (155)
T 2oto_A 32 KDLKARLENAMEV 44 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 66
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=72.40 E-value=5.8 Score=18.21 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=17.8
Q ss_pred HHhHHHhHhhHHHHHHhhhHhhhhhhhhHh
Q psy5576 123 LHGLKSELHGLKSELHGLKSELGLNCYLTY 152 (156)
Q Consensus 123 i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (156)
+..++.+...+..+++.+..++.-.+|+.+
T Consensus 4 iaaikeeqaaieeeiqaikeeiaaikylia 33 (36)
T 1bb1_B 4 IAAIKEEQAAIEEEIQAIKEEIAAIKYLIA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666654
No 67
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=72.17 E-value=30 Score=26.34 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=13.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576 88 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123 (156)
Q Consensus 88 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i 123 (156)
+..++..+......+..++..+..+..++..+...+
T Consensus 93 ~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i 128 (409)
T 1m1j_C 93 IIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKI 128 (409)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 68
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=71.62 E-value=33 Score=26.62 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=13.7
Q ss_pred HHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHh
Q psy5576 46 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 83 (156)
Q Consensus 46 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (156)
+...+.++..+...++.+...+.....+.......+..
T Consensus 358 lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a 395 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNA 395 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 69
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=69.96 E-value=8.8 Score=19.28 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy5576 108 ELHGLK 113 (156)
Q Consensus 108 ~l~~l~ 113 (156)
++..|+
T Consensus 24 Ri~~LE 29 (43)
T 2pnv_A 24 RIVTLE 29 (43)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 70
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=69.84 E-value=26 Score=24.59 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=27.6
Q ss_pred hhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q psy5576 55 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 120 (156)
Q Consensus 55 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 120 (156)
.+......+...+..+.-+..-...++..+...|..+..--.-+...++.++..=..|+..+..++
T Consensus 153 ~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~ 218 (242)
T 3uux_B 153 ALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQID 218 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443333333333333333333333333333
No 71
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=69.74 E-value=14 Score=28.06 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=15.7
Q ss_pred HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhH
Q psy5576 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSEL 39 (156)
Q Consensus 5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 39 (156)
..|..++.++.....++...+..+...+..+..++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443333
No 72
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=69.00 E-value=17 Score=22.12 Aligned_cols=11 Identities=9% Similarity=0.117 Sum_probs=5.7
Q ss_pred hhhhhhHhhhc
Q psy5576 145 GLNCYLTYFLF 155 (156)
Q Consensus 145 ~~~~~~~~~~~ 155 (156)
+++++|-..||
T Consensus 87 ~~~~kIq~ILY 97 (106)
T 4e61_A 87 RFVKKVESILY 97 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 45555555443
No 73
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=67.13 E-value=10 Score=18.87 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=7.0
Q ss_pred HHHHHHhHHHhHHhHHHhH
Q psy5576 112 LKSELHGLKSELHGLKSEL 130 (156)
Q Consensus 112 l~~~~~~~~~~i~~l~~~~ 130 (156)
+..++......|..++.++
T Consensus 14 VdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 14 VDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 74
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=64.36 E-value=25 Score=22.49 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 102 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 102 ~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
+.-+..++..+...+..+...+..+...+..+...++.+
T Consensus 100 ~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 100 ISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433
No 75
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=61.45 E-value=24 Score=21.21 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=8.2
Q ss_pred hhhhHhhHHhHHHhHHhhHHhH
Q psy5576 53 LHGLKSELHGLKSELHGLKSEL 74 (156)
Q Consensus 53 ~~~l~~~~~~~~~~~~~~~~~~ 74 (156)
+..+...+..++.+..++..++
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 76
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=61.19 E-value=4 Score=24.26 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy5576 85 KSELHGLKSEL 95 (156)
Q Consensus 85 ~~e~~~l~~~~ 95 (156)
...++-+..++
T Consensus 61 ~aQ~~iY~~DF 71 (96)
T 3fx0_A 61 KAQADIYKADF 71 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 77
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=59.27 E-value=60 Score=25.13 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhHHHhHH
Q psy5576 103 HGLKSELHGLKSELHGLKSELH 124 (156)
Q Consensus 103 ~~l~~~l~~l~~~~~~~~~~i~ 124 (156)
..|..-+..+...+..++..+.
T Consensus 166 ~~l~~~~~~~~~~i~~l~~~~~ 187 (461)
T 3ghg_B 166 RVLRSILENLRSKIQKLESDVS 187 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 78
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=58.63 E-value=64 Score=25.25 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=6.6
Q ss_pred HhHHHhHHhHHHhHhhHH
Q psy5576 117 HGLKSELHGLKSELHGLK 134 (156)
Q Consensus 117 ~~~~~~i~~l~~~~~~~~ 134 (156)
..+..++..+...+..+.
T Consensus 126 ~~l~~~i~~l~~~~~~~~ 143 (501)
T 1wle_A 126 REIRKQLTLLYPKEAQLE 143 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 79
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=58.19 E-value=62 Score=24.94 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=9.5
Q ss_pred HHHHhHHHhHHhHHHhHhhHHHHH
Q psy5576 114 SELHGLKSELHGLKSELHGLKSEL 137 (156)
Q Consensus 114 ~~~~~~~~~i~~l~~~~~~~~~~~ 137 (156)
++...+..++..+...+..+..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 76 AKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443333
No 80
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=56.74 E-value=54 Score=23.81 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=20.1
Q ss_pred HhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHH
Q psy5576 12 DGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64 (156)
Q Consensus 12 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 64 (156)
+.+...+.++..+........+.+..++..+.+.+...+..+......+.-.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~af~~~~~~f~ 66 (302)
T 2y3a_B 14 EAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFE 66 (302)
T ss_dssp -------CCCSSCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444333333333
No 81
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=56.08 E-value=31 Score=20.85 Aligned_cols=59 Identities=8% Similarity=0.069 Sum_probs=36.4
Q ss_pred HHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHH
Q psy5576 78 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 136 (156)
Q Consensus 78 ~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~ 136 (156)
..++..++..+.++..-+.++-..+.+...-+..++.........+..-..++.....-
T Consensus 20 ~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~y 78 (109)
T 3hd7_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555566666666666666666666666666666666666666666666555433
No 82
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=53.78 E-value=77 Score=24.72 Aligned_cols=17 Identities=12% Similarity=0.046 Sum_probs=6.3
Q ss_pred hHHHhHHhHHHhHhhHH
Q psy5576 118 GLKSELHGLKSELHGLK 134 (156)
Q Consensus 118 ~~~~~i~~l~~~~~~~~ 134 (156)
.+..++..+...+..+.
T Consensus 82 ~l~~~i~~le~~~~~~~ 98 (485)
T 3qne_A 82 KLSNEKKEIIEKEAEAD 98 (485)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 83
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=53.40 E-value=62 Score=23.54 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=7.5
Q ss_pred hHHhHHHHHHHHHHhHHhH
Q psy5576 10 ELDGLKSELHGLKSELHGL 28 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~ 28 (156)
.+..+...+......+...
T Consensus 71 ~l~~~~a~l~~~~a~l~~a 89 (369)
T 4dk0_A 71 TLNTRKAALASYQAQLVAR 89 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333
No 84
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=51.99 E-value=5 Score=23.87 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=9.3
Q ss_pred HHHHHHHhHHhHHHHHHHHHHhHHhHHhhH
Q psy5576 17 ELHGLKSELHGLKSELHGLKSELHGLKSEL 46 (156)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 46 (156)
+++.+...+..++..+......++.+.+.+
T Consensus 18 ei~~L~~~L~~AEeaL~~KQ~~ideLKe~i 47 (96)
T 3fx0_A 18 QLEDLKQQLQQAEEALVAKQEVIDKLKEEA 47 (96)
T ss_dssp --------CCSSTTTTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 85
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=50.10 E-value=34 Score=19.60 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhHHHhHHhHHHhH
Q psy5576 107 SELHGLKSELHGLKSELHGLKSEL 130 (156)
Q Consensus 107 ~~l~~l~~~~~~~~~~i~~l~~~~ 130 (156)
.++...+.....+..++..++.++
T Consensus 45 skL~eae~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 45 SQLREAEARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 86
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=49.07 E-value=38 Score=19.80 Aligned_cols=14 Identities=14% Similarity=0.098 Sum_probs=5.3
Q ss_pred HHHHHhHHHHHHHH
Q psy5576 92 KSELHGLKSELHGL 105 (156)
Q Consensus 92 ~~~~~~~~~~~~~l 105 (156)
...++.++.+.+-+
T Consensus 73 E~RLsKtEKDkAiL 86 (101)
T 1d7m_A 73 EARLAKTEKDRAIL 86 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHH
Confidence 33333333333333
No 87
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=49.06 E-value=85 Score=23.84 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=4.6
Q ss_pred HHhHHhHHHhHhh
Q psy5576 120 KSELHGLKSELHG 132 (156)
Q Consensus 120 ~~~i~~l~~~~~~ 132 (156)
..++..+...+..
T Consensus 77 ~~~~~~~~~~~~~ 89 (421)
T 1ses_A 77 GEEAKRLEEALRE 89 (421)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 88
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=47.55 E-value=42 Score=19.83 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=11.5
Q ss_pred HHHhHHhhHHhHHHHHHhHHhhHHH
Q psy5576 63 LKSELHGLKSELHGLKSELHGLKSE 87 (156)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~e 87 (156)
-..++..-+.-+..+..++..+...
T Consensus 66 ~~~EI~~Rk~~v~~l~~~i~~lk~~ 90 (95)
T 2c5k_T 66 ENEDVSGREAQVKNIKQQLDALKLR 90 (95)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 89
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=47.02 E-value=35 Score=18.83 Aligned_cols=49 Identities=20% Similarity=0.254 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhh
Q psy5576 84 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 132 (156)
Q Consensus 84 ~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~ 132 (156)
-+.+|..+..-+..+...+-....=-..|+.+....+..++.+.+.+.+
T Consensus 15 Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d 63 (74)
T 2q6q_A 15 KQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSD 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhccc
Confidence 3333444443333333333333322233334444444444444444433
No 90
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=47.00 E-value=51 Score=20.66 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhh
Q psy5576 17 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 53 (156)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 53 (156)
++.+-...+...+..-..+...+..+...+..+...+
T Consensus 10 ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~El 46 (130)
T 3cl3_D 10 ELQESQSRLEAATKECQALEGRARAASEQARQLESER 46 (130)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333334444444444444444444444444443333
No 91
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=45.45 E-value=16 Score=22.33 Aligned_cols=40 Identities=28% Similarity=0.271 Sum_probs=19.2
Q ss_pred HHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhh
Q psy5576 109 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNC 148 (156)
Q Consensus 109 l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~ 148 (156)
...|+.++..+..+++.+..+...+..+++.+...|.-|.
T Consensus 60 ~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 60 KEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQ 99 (107)
T ss_dssp HHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555554444
No 92
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=44.99 E-value=46 Score=19.55 Aligned_cols=14 Identities=29% Similarity=0.164 Sum_probs=5.3
Q ss_pred HhHHHhHHhhHHhH
Q psy5576 61 HGLKSELHGLKSEL 74 (156)
Q Consensus 61 ~~~~~~~~~~~~~~ 74 (156)
..+......++..-
T Consensus 24 ~~lKq~RRtlKNRg 37 (90)
T 2wt7_B 24 IRLKQKRRTLKNRG 37 (90)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhH
Confidence 33333333333333
No 93
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=44.54 E-value=20 Score=15.92 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=11.8
Q ss_pred HhHHHHHHHHHHhHHhHHHHHHHH
Q psy5576 12 DGLKSELHGLKSELHGLKSELHGL 35 (156)
Q Consensus 12 ~~l~~~l~~~~~~~~~~~~~~~~~ 35 (156)
..|++.+..++.....++.++..+
T Consensus 3 aaleqkiaaleqkcaaceqkiaal 26 (32)
T 4g1a_A 3 AALEQKIAALEQKCAACEQKIAAL 26 (32)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544443
No 94
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=44.08 E-value=1e+02 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=15.5
Q ss_pred hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHh
Q psy5576 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSE 38 (156)
Q Consensus 4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~ 38 (156)
+..|+..+..++.+|.++...+..-...+..+...
T Consensus 304 ~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~ 338 (406)
T 4dyl_A 304 VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQE 338 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433333
No 95
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=42.90 E-value=56 Score=23.29 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=6.6
Q ss_pred hHHHHHHhhhHhhhhhhh
Q psy5576 132 GLKSELHGLKSELGLNCY 149 (156)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~ 149 (156)
++-..+..+.+++...++
T Consensus 241 ~~~~~~~~~~~~~~~~~~ 258 (268)
T 2yo3_A 241 EILSKIYHIENEIARIKK 258 (268)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333333333333333
No 96
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=42.80 E-value=58 Score=20.13 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=7.2
Q ss_pred HhhHHhHHHHHHHHHHh
Q psy5576 8 KSELDGLKSELHGLKSE 24 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~ 24 (156)
+++|..|...++.+..+
T Consensus 9 K~Eiq~L~drLD~~~rK 25 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQ 25 (123)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 97
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=37.72 E-value=96 Score=21.20 Aligned_cols=41 Identities=12% Similarity=0.336 Sum_probs=17.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHH
Q psy5576 88 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 128 (156)
Q Consensus 88 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~ 128 (156)
+..++..+...+.++..+..++..+...+......|+.+..
T Consensus 107 ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 107 ITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhheeecccccchhhhhhhhhhcccccccccchhhhhh
Confidence 33333333334444444444444444444444444444443
No 98
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=37.20 E-value=60 Score=18.67 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHh-hhhhhhhHhhhc
Q psy5576 107 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE-LGLNCYLTYFLF 155 (156)
Q Consensus 107 ~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~ 155 (156)
.++..+...+..+..+-.-+=.++.++.--.+..... .++.+.|...||
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~~ILY 57 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILY 57 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 3334444444444444444444444444333333322 234555554443
No 99
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=36.99 E-value=73 Score=19.63 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 100 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 100 ~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
..+.-+..++..+...+..+...+..+...+..+...++.+
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444555555554444444444443
No 100
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=35.47 E-value=85 Score=19.94 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576 100 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 134 (156)
Q Consensus 100 ~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~ 134 (156)
..+..-...+-.|..+.+...+.|..|...-..--
T Consensus 96 ADIdNNinnIYELAQQQDQHSSDIKTLkKnS~~NT 130 (157)
T 2qih_A 96 ADIANNIKNIYELAQQQDQHSSDIKTLAKVSAANT 130 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhHHHHHHHHhcchhcc
Confidence 33333333344444555555555555554443333
No 101
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=34.25 E-value=64 Score=18.10 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=3.6
Q ss_pred HHHhHHhHH
Q psy5576 119 LKSELHGLK 127 (156)
Q Consensus 119 ~~~~i~~l~ 127 (156)
++.+|..+.
T Consensus 45 Le~EIatYR 53 (74)
T 2xv5_A 45 LDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 102
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=32.65 E-value=68 Score=17.96 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=8.7
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLK 29 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~ 29 (156)
++..+..|+.+.+.....+..++
T Consensus 7 iKkkmqaLk~Ekdna~e~~e~lE 29 (75)
T 3mtu_A 7 IKKKMQMLKLDKENALDRAEQAE 29 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 103
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=32.16 E-value=80 Score=18.62 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=19.5
Q ss_pred hHHhHHHHHHHHHHhHHhHH-----HHHHHHHHhHHhHHhhHHhHHHhhhhh
Q psy5576 10 ELDGLKSELHGLKSELHGLK-----SELHGLKSELHGLKSELHGLKSELHGL 56 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~l 56 (156)
+...+..++..+..+..... .++..++..++.+..+++.+...+...
T Consensus 24 ~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~ 75 (93)
T 3sjb_C 24 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSE 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433322 123344444444444444444444333
No 104
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=32.02 E-value=92 Score=19.29 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=17.6
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHh
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHG 41 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 41 (156)
+++..|+.++........-+++.+.....++.+
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFRe 36 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRK 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555544444433
No 105
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=31.77 E-value=40 Score=15.01 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=6.4
Q ss_pred HHhhHHhHHHHHHHH
Q psy5576 7 RKSELDGLKSELHGL 21 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~ 21 (156)
++.++...+..++.+
T Consensus 4 IkkELtQIK~kvDsL 18 (28)
T 1txp_A 4 IKKELTQIKQKVDSL 18 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 106
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=31.50 E-value=88 Score=18.90 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=9.8
Q ss_pred HhHHHhHhhHHHHHHhhhHhhh
Q psy5576 124 HGLKSELHGLKSELHGLKSELG 145 (156)
Q Consensus 124 ~~l~~~~~~~~~~~~~l~~~~~ 145 (156)
..+...+.++-...+..+..|.
T Consensus 98 ~~L~~kf~e~m~~y~~~q~~yr 119 (127)
T 1ez3_A 98 STLSRKFVEVMSEYNATQSDYR 119 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 107
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=30.81 E-value=92 Score=21.84 Aligned_cols=53 Identities=9% Similarity=0.058 Sum_probs=16.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576 88 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140 (156)
Q Consensus 88 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l 140 (156)
.+.+..++..+..+...++.++..+..++.+...++.-...-+.++-..+..+
T Consensus 150 ~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i 202 (250)
T 2ve7_C 150 YKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKI 202 (250)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhc
Confidence 33333333344444444444455555554444444443333444444444333
No 108
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=30.60 E-value=59 Score=16.61 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=12.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHhHHh
Q psy5576 96 HGLKSELHGLKSELHGLKSELHGLKSELHG 125 (156)
Q Consensus 96 ~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~ 125 (156)
..+......+..++..|+..-+..+.+|..
T Consensus 7 ~kLKe~n~~L~~kv~~Le~~c~~~eQEieR 36 (48)
T 3vmx_A 7 LRLKQINIQLATKIQHLEFSCSEKEQEIER 36 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 333333344444444444444444444433
No 109
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.25 E-value=2e+02 Score=22.37 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy5576 103 HGLKSELHGLKSE 115 (156)
Q Consensus 103 ~~l~~~l~~l~~~ 115 (156)
..++.++..++.+
T Consensus 121 ~~le~~~~~~~~~ 133 (484)
T 3lss_A 121 AGLAKEAQQLEEE 133 (484)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 110
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=29.01 E-value=84 Score=17.87 Aligned_cols=8 Identities=0% Similarity=0.040 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy5576 14 LKSELHGL 21 (156)
Q Consensus 14 l~~~l~~~ 21 (156)
|..++...
T Consensus 10 Lq~e~~~~ 17 (78)
T 2ic6_A 10 VQDNITLH 17 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 111
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=28.56 E-value=96 Score=18.38 Aligned_cols=11 Identities=0% Similarity=0.048 Sum_probs=4.0
Q ss_pred hHHHHHHHHHH
Q psy5576 13 GLKSELHGLKS 23 (156)
Q Consensus 13 ~l~~~l~~~~~ 23 (156)
+|..++...+.
T Consensus 9 eLq~e~~~~E~ 19 (96)
T 2ic9_A 9 EVQDNITLHEQ 19 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 112
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=28.29 E-value=66 Score=16.41 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=25.2
Q ss_pred HHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhh
Q psy5576 120 KSELHGLKSELHGLKSELHGLKSELGLNCYLTYF 153 (156)
Q Consensus 120 ~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 153 (156)
....+++...+......+..+..+.+||--|--.
T Consensus 13 Rkk~eeler~lrk~kk~iKklEdeNPWLGNIkGI 46 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEEDNPWLGNIKGI 46 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCchhhhhhh
Confidence 4455677777778888888888888888766543
No 113
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=28.14 E-value=2.1e+02 Score=22.25 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=7.9
Q ss_pred HhHHHhHHhHHHhHhhHHHH
Q psy5576 117 HGLKSELHGLKSELHGLKSE 136 (156)
Q Consensus 117 ~~~~~~i~~l~~~~~~~~~~ 136 (156)
..+..++..+...+..+..+
T Consensus 114 ~~l~~~i~~le~~~~~~~~~ 133 (484)
T 3lss_A 114 KDLSDQVAGLAKEAQQLEEE 133 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333
No 114
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.74 E-value=62 Score=15.96 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=11.5
Q ss_pred hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhH
Q psy5576 9 SELDGLKSELHGLKSELHGLKSELHGLKSEL 39 (156)
Q Consensus 9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 39 (156)
..|..|+..--.+...-+.++.-+..++.++
T Consensus 10 kkiarlkkdnlqlerdeqnlekiianlrdei 40 (52)
T 3he5_B 10 KKIARLKKDNLQLERDEQNLEKIIANLRDEI 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhHhhHHHHHHHHHHHH
Confidence 3344444333333333333333333333333
No 115
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=27.50 E-value=1.3e+02 Score=19.56 Aligned_cols=21 Identities=5% Similarity=0.134 Sum_probs=9.0
Q ss_pred HhHHHhHhhHHHHHHhhhHhh
Q psy5576 124 HGLKSELHGLKSELHGLKSEL 144 (156)
Q Consensus 124 ~~l~~~~~~~~~~~~~l~~~~ 144 (156)
..+...+.++-...+.++..|
T Consensus 129 ~~L~~kf~~~m~~yq~~q~~y 149 (180)
T 1s94_A 129 STISRKFVEVMSDYNTTQIDY 149 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 116
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=25.64 E-value=80 Score=17.71 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=12.9
Q ss_pred HHhhHHhHHHHHHHHHHhHHhHHHH
Q psy5576 7 RKSELDGLKSELHGLKSELHGLKSE 31 (156)
Q Consensus 7 ~~~ei~~l~~~l~~~~~~~~~~~~~ 31 (156)
++.+.+.|+..|.++......++.+
T Consensus 13 VREEVevLKe~I~EL~e~~~qLE~E 37 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNSQLERE 37 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444433
No 117
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=25.58 E-value=63 Score=15.31 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHHH
Q psy5576 13 GLKSELHGLKSELHGLKSELHGLK 36 (156)
Q Consensus 13 ~l~~~l~~~~~~~~~~~~~~~~~~ 36 (156)
.|..++.++-..-..++.++..++
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444334444433333
No 118
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=23.98 E-value=1.5e+02 Score=18.94 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=13.8
Q ss_pred HHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhH
Q psy5576 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSEL 39 (156)
Q Consensus 6 ~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 39 (156)
.++.+.+.-=.+...+...+..+...|..+...+
T Consensus 49 rYK~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L 82 (140)
T 1xaw_A 49 LYKRNFDTGLQEYKSLQSVLDEINKELSRLDKEL 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333333334444444444444444444333
No 119
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=22.89 E-value=2.2e+02 Score=20.63 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHhHH
Q psy5576 103 HGLKSELHGLKSELHGLKSELHGLK 127 (156)
Q Consensus 103 ~~l~~~l~~l~~~~~~~~~~i~~l~ 127 (156)
..+..++..+...+..+..++..+.
T Consensus 229 ~~l~~~i~~l~~~l~~~~~~l~~~~ 253 (357)
T 3rrk_A 229 ARMKERARLAPEELVGIREEVARLS 253 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 120
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=22.73 E-value=1.6e+02 Score=18.95 Aligned_cols=8 Identities=0% Similarity=-0.031 Sum_probs=2.8
Q ss_pred hHHhhHHh
Q psy5576 66 ELHGLKSE 73 (156)
Q Consensus 66 ~~~~~~~~ 73 (156)
.+..++..
T Consensus 77 ~~d~lekK 84 (158)
T 3tul_A 77 VYDAATKK 84 (158)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 121
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.64 E-value=74 Score=15.07 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHhHHhHHHHHH
Q psy5576 13 GLKSELHGLKSELHGLKSELH 33 (156)
Q Consensus 13 ~l~~~l~~~~~~~~~~~~~~~ 33 (156)
.|+..+.++-.....++.++.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~ 25 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVA 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 333444444333333333333
No 122
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=22.51 E-value=1.5e+02 Score=18.50 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=6.0
Q ss_pred HHHHHHHHHhHHhHHH
Q psy5576 15 KSELHGLKSELHGLKS 30 (156)
Q Consensus 15 ~~~l~~~~~~~~~~~~ 30 (156)
...+..+...+..++.
T Consensus 12 ~~KvAElekkv~~lek 27 (125)
T 2pms_C 12 QAKIAELENQVHRLEQ 27 (125)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 123
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=20.60 E-value=1.7e+02 Score=18.44 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=19.3
Q ss_pred HHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHH
Q psy5576 49 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 91 (156)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 91 (156)
++.-..++-..+..++.+.-.++..+.....++..+...+.++
T Consensus 63 L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444
No 124
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.53 E-value=1.9e+02 Score=19.09 Aligned_cols=51 Identities=18% Similarity=0.101 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 100 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 100 ~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
..+-.+-++-..++.-+.-+...+..-.-.+...-+....+..+-+|...+
T Consensus 115 ~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~LaReQF~~ral 165 (174)
T 2p22_A 115 NQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVRWH 165 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666777777666666666666667777777776666543
No 125
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=20.41 E-value=1.5e+02 Score=17.85 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=11.6
Q ss_pred HHhHHHhHHhhHHhHHHHHHhHHhhHHHHH
Q psy5576 60 LHGLKSELHGLKSELHGLKSELHGLKSELH 89 (156)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 89 (156)
+..++.+.-.++..+.....++..+...+.
T Consensus 58 I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~ 87 (107)
T 1ytz_T 58 LYQLQTEKYDFAEQIKRKKYEIVTLRNRID 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Confidence 333333333333333333333344333333
No 126
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=20.26 E-value=97 Score=19.13 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=7.4
Q ss_pred HhhHHhHHHHHHHHHHhH
Q psy5576 8 KSELDGLKSELHGLKSEL 25 (156)
Q Consensus 8 ~~ei~~l~~~l~~~~~~~ 25 (156)
++++..|..++..++..+
T Consensus 3 ~~~l~~l~~~~~~l~~~l 20 (149)
T 1rtm_1 3 EVKLANMEAEINTLKSKL 20 (149)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
Done!