Query psy5576
Match_columns 156
No_of_seqs 118 out of 796
Neff 9.8
Searched_HMMs 13730
Date Fri Aug 16 21:02:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5576.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5576hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 77.2 5.1 0.00037 23.6 10.6 8 17-24 9-16 (133)
2 d1ivsa1 a.2.7.3 (A:797-862) Va 75.0 3.8 0.00028 21.1 6.2 23 10-32 5-27 (66)
3 d1nkpb_ a.38.1.1 (B:) Max prot 47.8 17 0.0013 19.2 4.9 14 3-16 13-26 (83)
4 d1nkpa_ a.38.1.1 (A:) Myc prot 34.8 31 0.0022 18.4 6.9 15 3-17 17-31 (88)
5 d2azeb1 e.63.1.2 (B:201-301) T 33.0 37 0.0027 18.9 5.4 29 6-34 5-33 (101)
6 d1ybza1 a.130.1.1 (A:2-75) mon 32.5 31 0.0023 17.8 5.3 34 81-114 3-36 (74)
7 d1kuqa_ a.16.1.2 (A:) Ribosoma 31.3 27 0.0019 18.8 3.2 51 100-150 17-67 (84)
8 d2d8da1 a.130.1.1 (A:3-82) Cho 31.1 34 0.0025 17.8 4.8 34 81-114 3-36 (80)
9 d1owaa_ a.7.1.1 (A:) Spectrin 29.1 50 0.0036 19.0 11.0 19 132-150 128-146 (156)
10 d1ab4a_ e.11.1.1 (A:) DNA Gyra 24.2 82 0.0059 22.7 5.8 12 13-24 444-455 (493)
11 d1nlwa_ a.38.1.1 (A:) Mad prot 22.7 51 0.0037 17.0 6.9 17 2-18 11-27 (79)
12 d1a32a_ a.16.1.2 (A:) Ribosoma 20.1 46 0.0034 17.8 2.8 48 103-150 21-68 (85)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=77.19 E-value=5.1 Score=23.56 Aligned_cols=8 Identities=25% Similarity=0.326 Sum_probs=2.8
Q ss_pred HHHHHHHh
Q psy5576 17 ELHGLKSE 24 (156)
Q Consensus 17 ~l~~~~~~ 24 (156)
+++.+...
T Consensus 9 ~~~~l~~~ 16 (133)
T d1fxkc_ 9 QLNIYQSQ 16 (133)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 2
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=75.02 E-value=3.8 Score=21.10 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=10.1
Q ss_pred hHHhHHHHHHHHHHhHHhHHHHH
Q psy5576 10 ELDGLKSELHGLKSELHGLKSEL 32 (156)
Q Consensus 10 ei~~l~~~l~~~~~~~~~~~~~~ 32 (156)
++..|..++..+...+..+...+
T Consensus 5 E~~RL~K~l~kl~~~i~~~~~kL 27 (66)
T d1ivsa1 5 WRRRQEKRLKELLALAERSQRKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 3
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.81 E-value=17 Score=19.25 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=6.2
Q ss_pred hhHHHHhhHHhHHH
Q psy5576 3 RKEKRKSELDGLKS 16 (156)
Q Consensus 3 ~~~~~~~ei~~l~~ 16 (156)
||..++.-++.|..
T Consensus 13 RR~~in~~f~~L~~ 26 (83)
T d1nkpb_ 13 RRDHIKDSFHSLRD 26 (83)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 4
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.78 E-value=31 Score=18.38 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=7.3
Q ss_pred hhHHHHhhHHhHHHH
Q psy5576 3 RKEKRKSELDGLKSE 17 (156)
Q Consensus 3 ~~~~~~~ei~~l~~~ 17 (156)
||+.++.-++.|..-
T Consensus 17 RR~~in~~f~~Lr~l 31 (88)
T d1nkpa_ 17 RRNELKRSFFALRDQ 31 (88)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555554443
No 5
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.05 E-value=37 Score=18.86 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=12.2
Q ss_pred HHHhhHHhHHHHHHHHHHhHHhHHHHHHH
Q psy5576 6 KRKSELDGLKSELHGLKSELHGLKSELHG 34 (156)
Q Consensus 6 ~~~~ei~~l~~~l~~~~~~~~~~~~~~~~ 34 (156)
.|+.+++.|...-..+...+..+...+..
T Consensus 5 ~L~~El~~L~~~E~~LD~li~~~~~~L~~ 33 (101)
T d2azeb1 5 GLTQDLRQLQESEQQLDHLMNICTTQLRL 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333
No 6
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=32.45 E-value=31 Score=17.78 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=18.2
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5576 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 114 (156)
Q Consensus 81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~ 114 (156)
++.+..+++.++.++-.+-.+...+..++..++.
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~~~~~I~~~K~ 36 (74)
T d1ybza1 3 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKK 36 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555554443
No 7
>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]}
Probab=31.27 E-value=27 Score=18.80 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 100 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 100 ~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
.+....+-++..+...|..+..-+..-..+......-..-+..+-.+|+||
T Consensus 17 ~DtGS~evQiA~lT~rI~~L~~Hlk~~kkD~~s~rgL~~lv~kRkklL~YL 67 (84)
T d1kuqa_ 17 GDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYL 67 (84)
T ss_dssp TCCSSHHHHHHHHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666666666666666555555555555666665
No 8
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=31.11 E-value=34 Score=17.77 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=18.3
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5576 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 114 (156)
Q Consensus 81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~ 114 (156)
+..+..+++.++.++-.+-.....+..++..++.
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~~~~~i~~~K~ 36 (80)
T d2d8da1 3 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQT 36 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555555555555544
No 9
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.05 E-value=50 Score=19.02 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=10.3
Q ss_pred hHHHHHHhhhHhhhhhhhh
Q psy5576 132 GLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~~ 150 (156)
.+...+..+...|..++..
T Consensus 128 ~i~~~l~~l~~~W~~L~~~ 146 (156)
T d1owaa_ 128 ETKAHIEELRHLWDLLLEL 146 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555666666555543
No 10
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=24.19 E-value=82 Score=22.65 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=4.4
Q ss_pred hHHHHHHHHHHh
Q psy5576 13 GLKSELHGLKSE 24 (156)
Q Consensus 13 ~l~~~l~~~~~~ 24 (156)
+|..+++++...
T Consensus 444 kL~~E~~~l~~e 455 (493)
T d1ab4a_ 444 KLLDEYKELLDQ 455 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 11
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.72 E-value=51 Score=16.98 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=9.9
Q ss_pred chhHHHHhhHHhHHHHH
Q psy5576 2 RRKEKRKSELDGLKSEL 18 (156)
Q Consensus 2 ~~~~~~~~ei~~l~~~l 18 (156)
+||+.++.-++.|..-+
T Consensus 11 ~RR~~in~~f~~L~~ll 27 (79)
T d1nlwa_ 11 NRRAHLRLSLEKLKGLV 27 (79)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 35666666666666544
No 12
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.11 E-value=46 Score=17.80 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576 103 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL 150 (156)
Q Consensus 103 ~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~ 150 (156)
...+-+++.+...|..+..-+..-..+......-..-+..+-.+|+|+
T Consensus 21 GS~evQiA~lT~rI~~L~~Hlk~~kkD~~srrgL~~lv~~RrklL~YL 68 (85)
T d1a32a_ 21 GSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYL 68 (85)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhhHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555455555555555554
Done!