RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5576
(156 letters)
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 58.5 bits (142), Expect = 1e-10
Identities = 45/143 (31%), Positives = 76/143 (53%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
+R++K E LK EL L++EL + E + EL + +L LK E++ LK EL
Sbjct: 350 KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
L+ EL L EL L + + G++++++ L+ E E+ + +L L ++L +
Sbjct: 410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ 469
Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
EL+ LK E ++ EL L+ EL
Sbjct: 470 ELYDLKEEYDRVEKELSKLQREL 492
Score = 54.3 bits (131), Expect = 3e-09
Identities = 41/145 (28%), Positives = 74/145 (51%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60
+ K EL+ L++EL + E + EL + +L LK E++ LK EL L+ EL
Sbjct: 356 TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
Query: 61 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 120
L EL L + + G++++++ L+ E E+ + +L L ++L + EL+ LK
Sbjct: 416 QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
Query: 121 SELHGLKSELHGLKSELHGLKSELG 145
E ++ EL L+ EL +++
Sbjct: 476 EEYDRVEKELSKLQRELAEAEAQAR 500
Score = 52.8 bits (127), Expect = 9e-09
Identities = 42/144 (29%), Positives = 73/144 (50%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
R K ++E+D L +E+ L+ E+ + L E LK EL L++EL + E
Sbjct: 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
+ EL + +L LK E++ LK EL L+ EL L EL L + + G++++++ L+
Sbjct: 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
Query: 122 ELHGLKSELHGLKSELHGLKSELG 145
E E+ + +L L ++L
Sbjct: 442 EKEDKALEIKKQEWKLEQLAADLS 465
Score = 52.8 bits (127), Expect = 9e-09
Identities = 39/140 (27%), Positives = 69/140 (49%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
+ + + EL + L L++E+ L +E+ L+ E+ + L E LK
Sbjct: 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK 363
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
EL L++EL + E + EL + +L LK E++ LK EL L+ EL L EL
Sbjct: 364 EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA 423
Query: 125 GLKSELHGLKSELHGLKSEL 144
L + + G++++++ L+ E
Sbjct: 424 DLNAAIAGIEAKINELEEEK 443
Score = 52.8 bits (127), Expect = 1e-08
Identities = 41/143 (28%), Positives = 73/143 (51%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
R +++ EL+ + L L++E+ L +E+ L+ E+ + L E LK EL
Sbjct: 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELE 367
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
L++EL + E + EL + +L LK E++ LK EL L+ EL L EL L +
Sbjct: 368 DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA 427
Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
+ G++++++ L+ E E+
Sbjct: 428 AIAGIEAKINELEEEKEDKALEI 450
Score = 52.4 bits (126), Expect = 1e-08
Identities = 41/144 (28%), Positives = 71/144 (49%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
+ K+ + E +K ++ L++E+ L+ + + EL + L L++E+ L +E+
Sbjct: 280 KIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
L+ E+ + L E LK EL L++EL + E + EL + +L LK
Sbjct: 340 ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
Query: 122 ELHGLKSELHGLKSELHGLKSELG 145
E++ LK EL L+ EL L EL
Sbjct: 400 EINELKRELDRLQEELQRLSEELA 423
Score = 52.0 bits (125), Expect = 2e-08
Identities = 39/143 (27%), Positives = 75/143 (52%), Gaps = 3/143 (2%)
Query: 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 65
+ +L+ LK E++ LK EL L+ EL L EL L + + G++++++ L+ E
Sbjct: 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL 448
Query: 66 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 125
E+ + +L L ++L + EL+ LK E ++ EL L+ EL +++ + + G
Sbjct: 449 EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
Query: 126 LKSELHGLKSEL---HGLKSELG 145
++ LK+ + HG ++LG
Sbjct: 509 GRAVEEVLKASIQGVHGTVAQLG 531
Score = 51.6 bits (124), Expect = 2e-08
Identities = 41/143 (28%), Positives = 71/143 (49%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
R E + L L++E+ L +E+ L+ E+ + L E LK EL L++EL
Sbjct: 315 RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE 374
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
+ E + EL + +L LK E++ LK EL L+ EL L EL L + + G+++
Sbjct: 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA 434
Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
+++ L+ E E+ + +L
Sbjct: 435 KINELEEEKEDKALEIKKQEWKL 457
Score = 51.2 bits (123), Expect = 3e-08
Identities = 39/143 (27%), Positives = 72/143 (50%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
+ + ++E+ L+ + + EL + L L++E+ L +E+ L+ E+ +
Sbjct: 294 EKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD 353
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
L E LK EL L++EL + E + EL + +L LK E++ LK EL L+
Sbjct: 354 KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE 413
Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
EL L EL L + + G+++++
Sbjct: 414 ELQRLSEELADLNAAIAGIEAKI 436
Score = 50.8 bits (122), Expect = 4e-08
Identities = 40/137 (29%), Positives = 68/137 (49%)
Query: 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
K ++ L++E+ L+ + + EL + L L++E+ L +E+ L+ E+ +
Sbjct: 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR 352
Query: 68 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127
L E LK EL L++EL + E + EL + +L LK E++ LK EL L+
Sbjct: 353 DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ 412
Query: 128 SELHGLKSELHGLKSEL 144
EL L EL L + +
Sbjct: 413 EELQRLSEELADLNAAI 429
Score = 50.1 bits (120), Expect = 8e-08
Identities = 39/118 (33%), Positives = 65/118 (55%)
Query: 28 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 87
+EL L+ L GLK EL L+SEL +++ L L EL ++ ++ E+ L+ E
Sbjct: 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731
Query: 88 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145
LK L L+ +L L+ E+ +KSEL L++ + L+ +LH L+ L+ L++ L
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789
Score = 50.1 bits (120), Expect = 9e-08
Identities = 40/140 (28%), Positives = 71/140 (50%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
+K +E++ L+ E+ + L E LK EL L++EL + E + EL +
Sbjct: 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
+L LK E++ LK EL L+ EL L EL L + + G++++++ L+ E E+
Sbjct: 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK 451
Query: 125 GLKSELHGLKSELHGLKSEL 144
+ +L L ++L + EL
Sbjct: 452 KQEWKLEQLAADLSKYEQEL 471
Score = 49.7 bits (119), Expect = 1e-07
Identities = 39/117 (33%), Positives = 65/117 (55%)
Query: 14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 73
+EL L+ L GLK EL L+SEL +++ L L EL ++ ++ E+ L+ E
Sbjct: 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731
Query: 74 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130
LK L L+ +L L+ E+ +KSEL L++ + L+ +LH L+ L+ L++ L
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
Score = 49.7 bits (119), Expect = 1e-07
Identities = 39/117 (33%), Positives = 65/117 (55%)
Query: 21 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 80
+EL L+ L GLK EL L+SEL +++ L L EL ++ ++ E+ L+ E
Sbjct: 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731
Query: 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 137
LK L L+ +L L+ E+ +KSEL L++ + L+ +LH L+ L+ L++ L
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
Score = 49.3 bits (118), Expect = 2e-07
Identities = 39/116 (33%), Positives = 65/116 (56%)
Query: 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
+EL L+ L GLK EL L+SEL +++ L L EL ++ ++ E+ L+ E
Sbjct: 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732
Query: 68 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123
LK L L+ +L L+ E+ +KSEL L++ + L+ +LH L+ L+ L++ L
Sbjct: 733 EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
Score = 48.1 bits (115), Expect = 4e-07
Identities = 37/141 (26%), Positives = 70/141 (49%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
E+ E + EL + +L LK E++ LK EL L+ EL L EL L + +
Sbjct: 371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIA 430
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
G++++++ L+ E E+ + +L L ++L + EL+ LK E ++ EL L+
Sbjct: 431 GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
Query: 122 ELHGLKSELHGLKSELHGLKS 142
EL +++ + + G ++
Sbjct: 491 ELAEAEAQARASEERVRGGRA 511
Score = 48.1 bits (115), Expect = 4e-07
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS-ELHGLKSEL 60
R+KE + +L L+ EL L E+ L+ L ++ L L ++ L E +K ++
Sbjct: 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI 296
Query: 61 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 120
L++E+ L+ + + EL + L L++E+ L +E+ L+ E+ + L
Sbjct: 297 GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356
Query: 121 SELHGLKSELHGLKSEL 137
E LK EL L++EL
Sbjct: 357 EEYAELKEELEDLRAEL 373
Score = 48.1 bits (115), Expect = 4e-07
Identities = 42/144 (29%), Positives = 78/144 (54%), Gaps = 2/144 (1%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
R E K EL L+SEL +++ L L EL ++ ++ E+ L+ E LK L
Sbjct: 681 ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE 740
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
L+ +L L+ E+ +KSEL L++ + L+ +LH L+ L+ L++ L S + +++
Sbjct: 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL--SHSRIPEIQA 798
Query: 122 ELHGLKSELHGLKSELHGLKSELG 145
EL L+ E+ +++ L ++ +L
Sbjct: 799 ELSKLEEEVSRIEARLREIEQKLN 822
Score = 47.4 bits (113), Expect = 7e-07
Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS-EL 60
+ KE + + + ++ +L L+ EL L E+ L+ L ++ L L ++ L E
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289
Query: 61 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 120
+K ++ L++E+ L+ + + EL + L L++E+ L +E+ L+ E+ +
Sbjct: 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER 349
Query: 121 SELHGLKSELHGLKSELHGLKSELG 145
L E LK EL L++EL
Sbjct: 350 KRRDKLTEEYAELKEELEDLRAELE 374
Score = 44.3 bits (105), Expect = 9e-06
Identities = 37/135 (27%), Positives = 74/135 (54%)
Query: 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 69
EL L+ E+ +++ L ++ +L+ L E L+ E+ L+ + LK ++ ++ E+
Sbjct: 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
Query: 70 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 129
L + L+ EL L++ L L+S L LK E L+++L L+ ++ L++++ +
Sbjct: 859 LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
Query: 130 LHGLKSELHGLKSEL 144
L LK++L L+ EL
Sbjct: 919 LSELKAKLEALEEEL 933
Score = 43.1 bits (102), Expect = 2e-05
Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
R E R E++ + L K L + E+ L+ + LK ++ ++ E+ L +
Sbjct: 808 SRIEARLREIEQKLNRLTLEKEYL---EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
L+ EL L++ L L+S L LK E L+++L L+ ++ L++++ + L LK+
Sbjct: 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924
Query: 122 ELHGLKSELHGLKSELHGLKSE 143
+L L+ EL ++ +
Sbjct: 925 KLEALEEELSEIEDPKGEDEEI 946
Score = 42.4 bits (100), Expect = 3e-05
Identities = 35/136 (25%), Positives = 72/136 (52%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
K + E+ +++ L ++ +L+ L E L+ E+ L+ + LK ++ ++ E+
Sbjct: 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
L + L+ EL L++ L L+S L LK E L+++L L+ ++ L++++ +
Sbjct: 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917
Query: 122 ELHGLKSELHGLKSEL 137
L LK++L L+ EL
Sbjct: 918 RLSELKAKLEALEEEL 933
Score = 41.2 bits (97), Expect = 8e-05
Identities = 38/149 (25%), Positives = 77/149 (51%), Gaps = 5/149 (3%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60
+ ++ LD L EL ++ ++ E+ L+ E LK L L+ +L L+ E+
Sbjct: 694 QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
Query: 61 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG-----LKSELHGLKSELHGLKSE 115
+KSEL L++ + L+ +LH L+ L+ L++ L +++EL L+ E+ +++
Sbjct: 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEAR 813
Query: 116 LHGLKSELHGLKSELHGLKSELHGLKSEL 144
L ++ +L+ L E L+ E+ L+ +
Sbjct: 814 LREIEQKLNRLTLEKEYLEKEIQELQEQR 842
Score = 41.2 bits (97), Expect = 1e-04
Identities = 35/139 (25%), Positives = 75/139 (53%)
Query: 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 66
S + +++EL L+ E+ +++ L ++ +L+ L E L+ E+ L+ + LK +
Sbjct: 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848
Query: 67 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 126
+ ++ E+ L + L+ EL L++ L L+S L LK E L+++L L+ ++ L
Sbjct: 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
Query: 127 KSELHGLKSELHGLKSELG 145
++++ + L LK++L
Sbjct: 909 EAQIEKKRKRLSELKAKLE 927
Score = 39.7 bits (93), Expect = 3e-04
Identities = 39/171 (22%), Positives = 78/171 (45%), Gaps = 26/171 (15%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHG-------------------- 41
+ E KSEL L++ + L+ +LH L+ L+ L++ L
Sbjct: 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRI 810
Query: 42 ------LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95
++ +L+ L E L+ E+ L+ + LK ++ ++ E+ L + L+ EL
Sbjct: 811 EARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
Query: 96 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL 146
L++ L L+S L LK E L+++L L+ ++ L++++ + L
Sbjct: 871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921
Score = 38.9 bits (91), Expect = 6e-04
Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Query: 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 62
++ EL L + + G++++++ L+ E E+ + +L L ++L + EL+
Sbjct: 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473
Query: 63 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122
LK E ++ EL L+ EL +++ + + G ++ LK+ + G +HG ++
Sbjct: 474 LKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQG----VHGTVAQ 529
Query: 123 LHGLKSE 129
L +
Sbjct: 530 LGSVGER 536
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 55.4 bits (134), Expect = 1e-09
Identities = 50/142 (35%), Positives = 80/142 (56%)
Query: 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 62
+ E R+ EL L L L+ EL L+ EL + EL L +EL L+ +L L+ E+
Sbjct: 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278
Query: 63 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122
L+ E+ L+ EL+ L +E+ L+ + L+ L L+ +L L+++L L+S+L L E
Sbjct: 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338
Query: 123 LHGLKSELHGLKSELHGLKSEL 144
L L+ +L LK EL L++EL
Sbjct: 339 LAELEEKLEELKEELESLEAEL 360
Score = 52.8 bits (127), Expect = 1e-08
Identities = 50/140 (35%), Positives = 83/140 (59%)
Query: 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 62
R E+ + EL+ L+ EL + EL L +EL L+ +L L+ E+ L+ E+ L+ EL+
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292
Query: 63 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122
L +E+ L+ + L+ L L+ +L L+++L L+S+L L EL L+ +L LK E
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
Query: 123 LHGLKSELHGLKSELHGLKS 142
L L++EL L++EL L+S
Sbjct: 353 LESLEAELEELEAELEELES 372
Score = 52.0 bits (125), Expect = 2e-08
Identities = 42/140 (30%), Positives = 79/140 (56%)
Query: 7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 66
R+ E++ L+ ++ L+ ++ L+ L L+ EL L+ EL L+ EL L ++ L+ +
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
Query: 67 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 126
L L++E+ L+ + L EL L++E+ L+ L + EL ++E+ L++++ L
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794
Query: 127 KSELHGLKSELHGLKSELGL 146
K EL L+ L L++EL L
Sbjct: 795 KEELKALREALDELRAELTL 814
Score = 50.4 bits (121), Expect = 5e-08
Identities = 48/135 (35%), Positives = 79/135 (58%)
Query: 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 69
L+ L+ EL L+ EL + EL L +EL L+ +L L+ E+ L+ E+ L+ EL+
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292
Query: 70 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 129
L +E+ L+ + L+ L L+ +L L+++L L+S+L L EL L+ +L LK E
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
Query: 130 LHGLKSELHGLKSEL 144
L L++EL L++EL
Sbjct: 353 LESLEAELEELEAEL 367
Score = 49.7 bits (119), Expect = 1e-07
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
R E+ + +L+ L+S++ L+ ++ L +E+ L++ L L+ L+ E+ L +L
Sbjct: 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE 431
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
++EL L++EL L+ EL L+ EL L+ L L+ EL + L + EL L++
Sbjct: 432 --EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
Query: 122 ELHGLKSELHGLKSELHGLK 141
L L+ L+ G+K
Sbjct: 490 RLDSLERLQENLEGFSEGVK 509
Score = 48.5 bits (116), Expect = 3e-07
Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
++EL+ L++EL L+S L L+ +L L+S++ L+ ++ L +E+ L++ L L+
Sbjct: 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
Query: 68 HGLKSELHGL-----KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122
L+ E+ L ++EL L++EL L+ EL L+ EL L+ L L+ EL +
Sbjct: 417 ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA 476
Query: 123 LHGLKSELHGLKSELHGLKS 142
L + EL L++ L L+
Sbjct: 477 LDAAERELAQLQARLDSLER 496
Score = 46.2 bits (110), Expect = 2e-06
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 2/132 (1%)
Query: 14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 73
LK+EL L EL L L L+ EL L+ EL + EL L +EL L+ +L L+ E
Sbjct: 218 LKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE 275
Query: 74 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 133
+ L+ E+ L+ EL+ L +E+ L+ + L+ L L+ +L L+++L L+S+L L
Sbjct: 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335
Query: 134 KSELHGLKSELG 145
EL L+ +L
Sbjct: 336 AEELAELEEKLE 347
Score = 37.3 bits (87), Expect = 0.002
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
+ E+ +++ L +E+ L+ + L+SEL L +E L+ L L+SEL L EL
Sbjct: 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
L+S+ L+ EL L+ +L L+ L GL+ + L+ L SE + L E
Sbjct: 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL----SEEYSLTLEEAEALE 960
Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
++ + + L L++++
Sbjct: 961 N--KIEDDEEEARRRLKRLENKI 981
Score = 37.0 bits (86), Expect = 0.002
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 6/130 (4%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGL-----KSELHGLKSELHGLKSELHGL 56
+ +E++ L++ L L+ L+ E+ L ++EL L++EL L+ EL L
Sbjct: 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
Query: 57 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 116
+ EL L+ L L+ EL + L + EL L++ L L+ L+ G+K+ L
Sbjct: 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALL 512
Query: 117 HGLKSELHGL 126
+S L G+
Sbjct: 513 KN-QSGLSGI 521
>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein.
Length = 326
Score = 51.5 bits (123), Expect = 2e-08
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 31 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 90
+L + L L+S L + + S L L ++L + + L K+ L+GL + +
Sbjct: 29 DLTPIYERLTNLESATASLSESVSTISSRLSDLSADLQDMTTSLDDAKATLNGLITTVQA 88
Query: 91 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLN 147
L++ + L SEL L + + + L++ +H +++ LKS + S GLN
Sbjct: 89 LQTSVDSLSSELADLSLTVSAHDAAISDLQTTVHANSTDISNLKSSV----SANGLN 141
Score = 50.7 bits (121), Expect = 4e-08
Identities = 25/107 (23%), Positives = 51/107 (47%)
Query: 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 69
+L + L L+S L + + S L L ++L + + L K+ L+GL + +
Sbjct: 29 DLTPIYERLTNLESATASLSESVSTISSRLSDLSADLQDMTTSLDDAKATLNGLITTVQA 88
Query: 70 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 116
L++ + L SEL L + + + L++ +H +++ LKS +
Sbjct: 89 LQTSVDSLSSELADLSLTVSAHDAAISDLQTTVHANSTDISNLKSSV 135
Score = 50.3 bits (120), Expect = 5e-08
Identities = 25/107 (23%), Positives = 51/107 (47%)
Query: 17 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 76
+L + L L+S L + + S L L ++L + + L K+ L+GL + +
Sbjct: 29 DLTPIYERLTNLESATASLSESVSTISSRLSDLSADLQDMTTSLDDAKATLNGLITTVQA 88
Query: 77 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123
L++ + L SEL L + + + L++ +H +++ LKS +
Sbjct: 89 LQTSVDSLSSELADLSLTVSAHDAAISDLQTTVHANSTDISNLKSSV 135
Score = 50.3 bits (120), Expect = 5e-08
Identities = 25/107 (23%), Positives = 51/107 (47%)
Query: 24 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 83
+L + L L+S L + + S L L ++L + + L K+ L+GL + +
Sbjct: 29 DLTPIYERLTNLESATASLSESVSTISSRLSDLSADLQDMTTSLDDAKATLNGLITTVQA 88
Query: 84 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130
L++ + L SEL L + + + L++ +H +++ LKS +
Sbjct: 89 LQTSVDSLSSELADLSLTVSAHDAAISDLQTTVHANSTDISNLKSSV 135
Score = 47.2 bits (112), Expect = 6e-07
Identities = 20/80 (25%), Positives = 41/80 (51%)
Query: 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 68
S L L ++L + + L K+ L+GL + + L++ + L SEL L + + +
Sbjct: 56 SRLSDLSADLQDMTTSLDDAKATLNGLITTVQALQTSVDSLSSELADLSLTVSAHDAAIS 115
Query: 69 GLKSELHGLKSELHGLKSEL 88
L++ +H +++ LKS +
Sbjct: 116 DLQTTVHANSTDISNLKSSV 135
Score = 42.2 bits (99), Expect = 4e-05
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
K+ L+GL + + L++ + L SEL L + + + L++ +H +++ LKS +
Sbjct: 76 KATLNGLITTVQALQTSVDSLSSELADLSLTVSAHDAAISDLQTTVHANSTDISNLKSSV 135
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 48.1 bits (115), Expect = 4e-07
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH-GLKSEL 60
RK +++L+ + +++ L++EL GL+++L L+ +L + EL + GL S L
Sbjct: 137 SRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRL 196
Query: 61 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 120
L+ E E + EL L++EL LK ++ L+ E ++ + E +
Sbjct: 197 ELLELE-----RERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQT---FREE---VL 245
Query: 121 SELHGLKSELHGLKSELHGLKSELGLN 147
EL ++ L L+ L+ + L
Sbjct: 246 EELTEAQARLAELRERLNKARDRLQRL 272
Score = 45.4 bits (108), Expect = 3e-06
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 28 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH-GLKS 86
+S L+++L + +++ L++EL GL+++L L+ +L + EL + GL S
Sbjct: 135 FESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVS 194
Query: 87 ELHGLKSE--LHGLKSELHGLKSELHGLKSELHGLKSELHGLKS--------ELHGLKSE 136
L L+ E + EL L++EL LK ++ L+ E ++ EL ++
Sbjct: 195 RLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQAR 254
Query: 137 LHGLKSEL 144
L L+ L
Sbjct: 255 LAELRERL 262
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 45.4 bits (107), Expect = 3e-06
Identities = 29/120 (24%), Positives = 57/120 (47%)
Query: 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 69
+LD ++ +L L++EL + E ++E +SEL + E ++ EL + L
Sbjct: 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAK 134
Query: 70 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 129
+ EL L + L++ L L + L+++ L++ L++ LKS++ LK
Sbjct: 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194
Score = 42.3 bits (99), Expect = 3e-05
Identities = 28/120 (23%), Positives = 56/120 (46%)
Query: 24 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 83
+L ++ +L L++EL + E ++E +SEL + E ++ EL + L
Sbjct: 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAK 134
Query: 84 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 143
+ EL L + L++ L L + L+++ L++ L++ LKS++ LK
Sbjct: 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194
Score = 38.5 bits (89), Expect = 7e-04
Identities = 25/111 (22%), Positives = 49/111 (44%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
++EL + E ++E +SEL + E ++ EL + L + EL L
Sbjct: 84 RALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLT 143
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 115
+ L++ L L + L+++ L++ L++ LKS++ LK
Sbjct: 144 KQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194
Score = 35.0 bits (80), Expect = 0.010
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 63
K ++E + +SEL + E ++ EL + L + EL L + L++ L L
Sbjct: 97 KRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTL 156
Query: 64 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 101
+ L+++ L++ L++ LKS++ LK
Sbjct: 157 AEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 44.2 bits (105), Expect = 7e-06
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 18/159 (11%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
E R L+GLK GL L GLK + L EL L S L+ L+ EL LK
Sbjct: 136 EWRMKLLEGLK---EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLK 192
Query: 65 -----------SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 113
+EL K +L L E+ +L L+ EL L+S++ L ++ L
Sbjct: 193 QLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252
Query: 114 SELHGLKSELHGLK----SELHGLKSELHGLKSELGLNC 148
+E+ + +L + E+ LK +L L+S G
Sbjct: 253 TEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGWKI 291
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 41.6 bits (98), Expect = 5e-05
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
R KE RK L K+EL L L L+ EL L++++ L+SE+ ++ + + +L
Sbjct: 25 RIKEIRK-ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS 83
Query: 62 GLKS--ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 119
+K EL L E+ K ++ L+ EL L E+ L+ E+ LK L L+ L
Sbjct: 84 AVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143
Query: 120 KS----ELHGLKSELHGLKSELHGLKSEL 144
++ E+ ++ E L S+ LK +L
Sbjct: 144 EARLEEEVAEIREEGQELSSKREELKEKL 172
Score = 32.0 bits (73), Expect = 0.087
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60
R E+ K ++ L+ EL L E+ L+ E+ LK L L+ L ++
Sbjct: 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEAR- 146
Query: 61 HGLKSELHGLKSELHGLKSELHGLKSEL 88
L+ E+ ++ E L S+ LK +L
Sbjct: 147 --LEEEVAEIREEGQELSSKREELKEKL 172
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 42.0 bits (99), Expect = 5e-05
Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
EK++ D + +E K ++ L++EL + E L +EL LK+EL LK ++ L+
Sbjct: 376 EKKQKNFDKILAEW---KRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALR 432
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
E L+ E+H L +L +H L+ L++E L++ L ++ L +S++
Sbjct: 433 RENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKVL 492
Query: 125 GLKSELHGLKSE 136
+ EL ++SE
Sbjct: 493 RAQVELSQIRSE 504
Score = 41.6 bits (98), Expect = 6e-05
Identities = 33/114 (28%), Positives = 61/114 (53%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
R+ ++ ++ELD + E L +EL LK+EL LK ++ L+ E L+ E+H L +L
Sbjct: 391 RKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLG 450
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 115
+H L+ L++E L++ L ++ L +S++ + EL ++SE
Sbjct: 451 EGGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKVLRAQVELSQIRSE 504
Score = 41.6 bits (98), Expect = 6e-05
Identities = 34/128 (26%), Positives = 65/128 (50%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
++++ L K ++ L++EL + E L +EL LK+EL LK ++ L+ E
Sbjct: 377 KKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENK 436
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
L+ E+H L +L +H L+ L++E L++ L ++ L +S++ +
Sbjct: 437 NLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKVLRAQV 496
Query: 122 ELHGLKSE 129
EL ++SE
Sbjct: 497 ELSQIRSE 504
Score = 40.4 bits (95), Expect = 1e-04
Identities = 37/134 (27%), Positives = 65/134 (48%)
Query: 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 63
K + +SEL+ L+ EL + L+ + L K ++ L++EL + E L
Sbjct: 351 KSRLQSELEDLQIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNL 410
Query: 64 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123
+EL LK+EL LK ++ L+ E L+ E+H L +L +H L+ L++E
Sbjct: 411 STELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEK 470
Query: 124 HGLKSELHGLKSEL 137
L++ L ++ L
Sbjct: 471 DELQAALEEAEAAL 484
Score = 39.3 bits (92), Expect = 4e-04
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
EK KS L +SEL L+ EL + L+ + L K ++ L++EL +
Sbjct: 348 EKTKSRL---QSELEDLQIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQ 404
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
E L +EL LK+EL LK ++ L+ E L+ E+H L +L +H L+
Sbjct: 405 REARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARR 464
Query: 125 GLKSELHGLKSELHGLKSEL 144
L++E L++ L ++ L
Sbjct: 465 RLEAEKDELQAALEEAEAAL 484
Score = 33.9 bits (78), Expect = 0.025
Identities = 31/97 (31%), Positives = 49/97 (50%)
Query: 49 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 108
L+SEL L+ EL + L+ + L K ++ L++EL + E L +E
Sbjct: 354 LQSELEDLQIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTE 413
Query: 109 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145
L LK+EL LK ++ L+ E L+ E+H L +LG
Sbjct: 414 LFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLG 450
Score = 28.1 bits (63), Expect = 2.0
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 62
+ EK KS+L ++E+ L ++L + + + L+S+L L+ +L L+ +L+
Sbjct: 149 KAEKEKSQL---QAEVDDLLAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLND 205
Query: 63 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122
L S+ L+SE L +L ++++ L L+S+L K L E L+++
Sbjct: 206 LTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKSQLESQLEEAKRSLEEESRERANLQAQ 265
Query: 123 LHGLKSELHGLKSEL 137
L L+ +L L+ +L
Sbjct: 266 LRQLEHDLDSLREQL 280
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 41.6 bits (98), Expect = 6e-05
Identities = 53/162 (32%), Positives = 72/162 (44%), Gaps = 22/162 (13%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSEL---HGLKSELHGLKSELHGLKSELHGLKSELH 61
EK+ E + LK +L LK E+ LK EL LK +L L+ +L L+ EL L EL
Sbjct: 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580
Query: 62 G--------LKSELHGLKS------ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 107
L+ L L+ EL + EL + EL L+ EL EL +
Sbjct: 581 ELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEK 640
Query: 108 ELHGLKSELHGLKS-----ELHGLKSELHGLKSELHGLKSEL 144
L L+ EL L+ E L+ E L EL GL++EL
Sbjct: 641 RLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAEL 682
Score = 41.2 bits (97), Expect = 8e-05
Identities = 54/177 (30%), Positives = 71/177 (40%), Gaps = 36/177 (20%)
Query: 5 EKRKSELDGLKSELHGLKSEL---HGLKSELHGLKSELHGLKSELHGLKSELHGL----- 56
EK K +L LK E+ LK EL LK +L L+ +L L+ EL L EL L
Sbjct: 528 EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESV 587
Query: 57 -----------------------KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 93
+ EL + EL L+ EL EL + L L+
Sbjct: 588 EELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRK 647
Query: 94 ELHGLKS-----ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145
EL L+ E L+ E L EL GL++EL L+ +K L LK EL
Sbjct: 648 ELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
Score = 41.2 bits (97), Expect = 1e-04
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
EK EL+ LK E+ L+ EL L+ L+ ++ L+ + LK E+ L+ ++ LK
Sbjct: 227 EKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK 286
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
EL E L EL ++ L L+ E++G++ + EL + L
Sbjct: 287 -ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI----KELEEKEERLE 341
Query: 125 GLKSELHGLKSELHGLK 141
LK +L L+ L L+
Sbjct: 342 ELKKKLKELEKRLEELE 358
Score = 40.8 bits (96), Expect = 1e-04
Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 11/147 (7%)
Query: 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 63
K+ EL+ E LK +L LK E+ LK EL +L LK +L L+ +L L
Sbjct: 513 KKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAELEKKLDEL 568
Query: 64 KSELHGLKSELHGLK-SELHGLKSELHGLKS------ELHGLKSELHGLKSELHGLKSEL 116
+ EL L EL L + L+ L L+ EL + EL + EL L+ EL
Sbjct: 569 EEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEEL 628
Query: 117 HGLKSELHGLKSELHGLKSELHGLKSE 143
EL + L L+ EL L+ +
Sbjct: 629 DKAFEELAETEKRLEELRKELEELEKK 655
Score = 38.9 bits (91), Expect = 6e-04
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 12/155 (7%)
Query: 3 RKEKRKSELDGLKSELHGLKSELHGLKS---ELHGLKSELHGLKSELHGLKSELHGLKSE 59
E+ E++ + SEL L+ EL L+ EL LK E+ L+ EL L+ L+ +
Sbjct: 201 ELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEK 260
Query: 60 LHGLKSELHGLKSELHGLKS------ELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 113
+ L+ + LK E+ L+ EL E L EL ++ L L+
Sbjct: 261 IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLE 320
Query: 114 SELHGLK---SELHGLKSELHGLKSELHGLKSELG 145
E++G++ EL + L LK +L L+ L
Sbjct: 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLE 355
Score = 38.1 bits (89), Expect = 9e-04
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
++++ EL+ + E++ + SEL L+ EL L+ E EL LK E+ L+ EL
Sbjct: 193 ELIKEKEKELEEVLREINEISSELPELREELEKLEKE----VKELEELKEEIEELEKELE 248
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
L+ L+ ++ L+ + LK E+ L+ ++ LK EL E L
Sbjct: 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLD 307
Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
EL ++ L L+ E++G++ +
Sbjct: 308 ELREIEKRLSRLEEEINGIEERI 330
Score = 37.4 bits (87), Expect = 0.002
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
+ E + L+ ++ L+ + LK E+ L+ ++ LK EL E L
Sbjct: 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYE 303
Query: 62 GLKSELHGLKSELHGLKSELHGLK---SELHGLKSELHGLKSELHGLKSELHGLKSELHG 118
EL ++ L L+ E++G++ EL + L LK +L L+ L L+ E H
Sbjct: 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE-ERHE 362
Query: 119 LKSELHGLKSELHGLKSELHGLKSE 143
L E K EL LK L GL E
Sbjct: 363 LYEEAKAKKEELERLKKRLTGLTPE 387
Score = 32.7 bits (75), Expect = 0.060
Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS-----EL 60
EL + EL + EL L+ EL EL + L L+ EL L+ E
Sbjct: 602 NEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEY 661
Query: 61 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 107
L+ E L EL GL++EL L+ +K L LK EL +
Sbjct: 662 EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
Score = 31.2 bits (71), Expect = 0.24
Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK---SELHGLK 57
+ K K EL E L EL ++ L L+ E++G++ EL +
Sbjct: 278 LEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE 337
Query: 58 SELHGLKSELHGLKSELHGLKS------ELHGLKSELHGLKSELHG-----LKSELHGLK 106
L LK +L L+ L L+ E K EL LK L G L+ EL L+
Sbjct: 338 ERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELE 397
Query: 107 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 142
++ E+ + + + LK E+ LK + LK
Sbjct: 398 KAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433
Score = 30.4 bits (69), Expect = 0.43
Identities = 45/177 (25%), Positives = 66/177 (37%), Gaps = 36/177 (20%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKS-------------------- 44
EK K E++ S++ EL EL EL K
Sbjct: 397 EKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEE 456
Query: 45 ---ELHGLKSELHGLKSELHGLKSELHGLKSELHGLK--SELHGLKSELHGLKSELHGL- 98
EL ++ EL ++ + L+ EL L+ L +L L +L L+ +L
Sbjct: 457 YTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYN 516
Query: 99 -------KSELHGLKSELHGLKSELHGLKSEL---HGLKSELHGLKSELHGLKSELG 145
E LK +L LK E+ LK EL LK +L L+ +L L+ EL
Sbjct: 517 LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA 573
Score = 30.4 bits (69), Expect = 0.43
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSE-----LHGLKSELHGLKSELHGL 56
+ KE+ + E+ + + + LK E+ LK + LK + G + K L
Sbjct: 398 KAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEY 457
Query: 57 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK--SELHGLKSELHGLKSELHGL-K 113
+EL ++ EL ++ + L+ EL L+ L +L L +L L+ +L
Sbjct: 458 TAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNL 517
Query: 114 SELHGLKSELHGLKSELHGLKSELHGLKSEL 144
EL E LK +L LK E+ LK EL
Sbjct: 518 EELEKKAEEYEKLKEKLIKLKGEIKSLKKEL 548
Score = 29.6 bits (67), Expect = 0.63
Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 9/147 (6%)
Query: 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS-- 65
E+ L ++ + + EL + E++ + SEL L+ EL L+
Sbjct: 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230
Query: 66 -ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS------ELHG 118
EL LK E+ L+ EL L+ L+ ++ L+ + LK E+ L+ EL
Sbjct: 231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKE 290
Query: 119 LKSELHGLKSELHGLKSELHGLKSELG 145
E L EL ++ L
Sbjct: 291 KAEEYIKLSEFYEEYLDELREIEKRLS 317
Score = 28.9 bits (65), Expect = 1.2
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 4/131 (3%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
E L + E+ L ++ + + EL + E++ + SEL L+
Sbjct: 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELR 220
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
EL L+ E EL LK E+ L+ EL L+ L+ ++ L+ + LK E+
Sbjct: 221 EELEKLEKE----VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276
Query: 125 GLKSELHGLKS 135
L+ ++ LK
Sbjct: 277 ELEEKVKELKE 287
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 38.9 bits (91), Expect = 5e-04
Identities = 52/149 (34%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSEL------HGLKSELHGLKSELHG 55
RKE+ + +L+ + L L+ L L+ +L L+ + LK+EL L+ L
Sbjct: 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELAL-- 229
Query: 56 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 115
L ++L L+ EL L+ EL L+ EL L+ EL + E+ LKSEL L+ EL L+ E
Sbjct: 230 LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289
Query: 116 LHGLKSELHGLKSELHGLKSELHGLKSEL 144
L LK E+ L+ E+ L+ L L++EL
Sbjct: 290 LLELKEEIEELEGEISLLRERLEELENEL 318
>gnl|CDD|219189 pfam06818, Fez1, Fez1. This family represents the eukaryotic Fez1
protein. Fez1 contains a leucine-zipper region with
similarity to the DNA-binding domain of the
cAMP-responsive activating-transcription factor 5. There
is evidence that Fez1 inhibits cancer cell growth
through regulation of mitosis, and that its alterations
result in abnormal cell growth. Note that some family
members contain more than one copy of this region.
Length = 200
Score = 38.0 bits (88), Expect = 8e-04
Identities = 35/135 (25%), Positives = 67/135 (49%)
Query: 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 69
E+ LK +L ++EL E+ L+++L +++L + +L L+ L EL
Sbjct: 11 EISLLKQQLKESQAELAQKAGEIVSLRAQLREARAQLRESEEQLQELQDALRTKTLELEV 70
Query: 70 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 129
++EL KSE L+ + L++EL L+ L + L L +E K++ ++
Sbjct: 71 CENELQRKKSEAELLREKAGRLEAELAELREALASCPAPLPVLLTESDEAKAQRQAGEAG 130
Query: 130 LHGLKSELHGLKSEL 144
L L+ ++ L++EL
Sbjct: 131 LRELRRQVERLRAEL 145
Score = 37.2 bits (86), Expect = 0.001
Identities = 27/104 (25%), Positives = 48/104 (46%)
Query: 52 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 111
E+ LK +L ++EL E+ L+++L +++L + +L L+ L EL
Sbjct: 11 EISLLKQQLKESQAELAQKAGEIVSLRAQLREARAQLRESEEQLQELQDALRTKTLELEV 70
Query: 112 LKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLF 155
++EL KSE L+ + L++EL L+ L L
Sbjct: 71 CENELQRKKSEAELLREKAGRLEAELAELREALASCPAPLPVLL 114
Score = 35.6 bits (82), Expect = 0.004
Identities = 33/130 (25%), Positives = 64/130 (49%)
Query: 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
K +L ++EL E+ L+++L +++L + +L L+ L EL ++EL
Sbjct: 16 KQQLKESQAELAQKAGEIVSLRAQLREARAQLRESEEQLQELQDALRTKTLELEVCENEL 75
Query: 68 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127
KSE L+ + L++EL L+ L + L L +E K++ ++ L L+
Sbjct: 76 QRKKSEAELLREKAGRLEAELAELREALASCPAPLPVLLTESDEAKAQRQAGEAGLRELR 135
Query: 128 SELHGLKSEL 137
++ L++EL
Sbjct: 136 RQVERLRAEL 145
Score = 34.1 bits (78), Expect = 0.013
Identities = 29/118 (24%), Positives = 59/118 (50%)
Query: 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 65
++ E+ L+++L +++L + +L L+ L EL ++EL KSE L+
Sbjct: 28 QKAGEIVSLRAQLREARAQLRESEEQLQELQDALRTKTLELEVCENELQRKKSEAELLRE 87
Query: 66 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123
+ L++EL L+ L + L L +E K++ ++ L L+ ++ L++EL
Sbjct: 88 KAGRLEAELAELREALASCPAPLPVLLTESDEAKAQRQAGEAGLRELRRQVERLRAEL 145
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 35.3 bits (81), Expect = 0.010
Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 3/148 (2%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
++ E + ++ L+ + LKS+ + ++ ++ +K + +L LKSE+
Sbjct: 281 DNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIE 340
Query: 62 GLKSELHGLKSELHGLKSELHGLK---SELHGLKSELHGLKSELHGLKSELHGLKSELHG 118
+ E+ L+S + L +L + + E L EL + + L +
Sbjct: 341 LKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKS 400
Query: 119 LKSELHGLKSELHGLKSELHGLKSELGL 146
K E G+ L + L +
Sbjct: 401 RKLEAQGIFKSLEKTLRQYDSLIQNITR 428
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 35.0 bits (81), Expect = 0.010
Identities = 24/109 (22%), Positives = 43/109 (39%)
Query: 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 68
SE +++ EL +L EL + E + +L LK+++ K L
Sbjct: 295 SEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLI 354
Query: 69 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 117
L + +K+ + L++E EL L+ EL + L E +
Sbjct: 355 TLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403
Score = 34.2 bits (79), Expect = 0.019
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
E+ E + +L LK+++ K L L + +K+ + L++E EL L+
Sbjct: 326 EEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQ 385
Query: 65 SELHGLKSELHGLKSELH 82
EL + L E +
Sbjct: 386 DELDKIVKTKSELVKEKY 403
Score = 33.8 bits (78), Expect = 0.023
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
+ EL+ + E + +L LK+++ K L L + +K+ + L++E
Sbjct: 319 DTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNA 378
Query: 65 SELHGLKSELHGLKSELHGLKSELH 89
EL L+ EL + L E +
Sbjct: 379 EELAKLQDELDKIVKTKSELVKEKY 403
Score = 33.1 bits (76), Expect = 0.045
Identities = 21/92 (22%), Positives = 38/92 (41%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
+ +LD EL + E + +L LK+++ K L L + +K+ + L+
Sbjct: 312 QHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELH 96
+E EL L+ EL + L E +
Sbjct: 372 AEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403
Score = 33.1 bits (76), Expect = 0.050
Identities = 22/102 (21%), Positives = 41/102 (40%)
Query: 23 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 82
+++ EL +L EL + E + +L LK+++ K L L +
Sbjct: 302 TKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAK 361
Query: 83 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
+K+ + L++E EL L+ EL + L E +
Sbjct: 362 KVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 34.5 bits (80), Expect = 0.014
Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHG-LKSELHGLKSELHGLKSELHGLKS 72
LK EL L+ EL L+ EL +K L L + G L E +L K +L
Sbjct: 332 LKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKL---SE 388
Query: 73 ELHGLKSELHGLKSELHGLKSE 94
EL L+ EL LK EL L SE
Sbjct: 389 ELEELEEELKELKEELESLYSE 410
Score = 34.5 bits (80), Expect = 0.014
Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 21 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHG-LKSELHGLKSELHGLKSELHGLKS 79
LK EL L+ EL L+ EL +K L L + G L E +L K +L
Sbjct: 332 LKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKL---SE 388
Query: 80 ELHGLKSELHGLKSELHGLKSE 101
EL L+ EL LK EL L SE
Sbjct: 389 ELEELEEELKELKEELESLYSE 410
Score = 34.5 bits (80), Expect = 0.014
Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 28 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHG-LKSELHGLKSELHGLKSELHGLKS 86
LK EL L+ EL L+ EL +K L L + G L E +L K +L
Sbjct: 332 LKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKL---SE 388
Query: 87 ELHGLKSELHGLKSELHGLKSE 108
EL L+ EL LK EL L SE
Sbjct: 389 ELEELEEELKELKEELESLYSE 410
Score = 34.5 bits (80), Expect = 0.014
Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 35 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHG-LKSELHGLKSELHGLKSELHGLKS 93
LK EL L+ EL L+ EL +K L L + G L E +L K +L
Sbjct: 332 LKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKL---SE 388
Query: 94 ELHGLKSELHGLKSELHGLKSE 115
EL L+ EL LK EL L SE
Sbjct: 389 ELEELEEELKELKEELESLYSE 410
Score = 34.5 bits (80), Expect = 0.014
Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 42 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHG-LKSELHGLKSELHGLKSELHGLKS 100
LK EL L+ EL L+ EL +K L L + G L E +L K +L
Sbjct: 332 LKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKL---SE 388
Query: 101 ELHGLKSELHGLKSELHGLKSE 122
EL L+ EL LK EL L SE
Sbjct: 389 ELEELEEELKELKEELESLYSE 410
Score = 34.5 bits (80), Expect = 0.014
Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 49 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHG-LKSELHGLKSELHGLKSELHGLKS 107
LK EL L+ EL L+ EL +K L L + G L E +L K +L
Sbjct: 332 LKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKL---SE 388
Query: 108 ELHGLKSELHGLKSELHGLKSE 129
EL L+ EL LK EL L SE
Sbjct: 389 ELEELEEELKELKEELESLYSE 410
Score = 34.5 bits (80), Expect = 0.014
Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 56 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHG-LKSELHGLKSELHGLKSELHGLKS 114
LK EL L+ EL L+ EL +K L L + G L E +L K +L
Sbjct: 332 LKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKL---SE 388
Query: 115 ELHGLKSELHGLKSELHGLKSE 136
EL L+ EL LK EL L SE
Sbjct: 389 ELEELEEELKELKEELESLYSE 410
Score = 34.5 bits (80), Expect = 0.014
Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 63 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHG-LKSELHGLKSELHGLKSELHGLKS 121
LK EL L+ EL L+ EL +K L L + G L E +L K +L
Sbjct: 332 LKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKL---SE 388
Query: 122 ELHGLKSELHGLKSELHGLKSE 143
EL L+ EL LK EL L SE
Sbjct: 389 ELEELEEELKELKEELESLYSE 410
Score = 32.2 bits (74), Expect = 0.090
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHG-----LKSELHGLKSELHGLKSELHG 62
K EL L+ EL L+ EL +K L L + G + +L L L EL
Sbjct: 333 KEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEE 392
Query: 63 LKSELHGLKSELHGLKSE 80
L+ EL LK EL L SE
Sbjct: 393 LEEELKELKEELESLYSE 410
Score = 29.5 bits (67), Expect = 0.67
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHG-----LKSELHGLKSELHGLKSELHG 55
++ + EL L+ EL +K L L + G + +L L L EL
Sbjct: 333 KEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEE 392
Query: 56 LKSELHGLKSELHGLKSE 73
L+ EL LK EL L SE
Sbjct: 393 LEEELKELKEELESLYSE 410
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 34.4 bits (79), Expect = 0.018
Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
E+R +EL+ K L LK+ L ++S EL L EL L
Sbjct: 235 EALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLE 294
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
L+ E+ L+ EL GL++ L L+ L LKS L+ L L+ +L L+SEL L
Sbjct: 295 ELEREIEELEEELEGLRALLEELEELLEKLKS----LEERLEKLEEKLEKLESELEELAE 350
Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
E + L L EL EL
Sbjct: 351 EKNELAKLLEERLKELEERLEEL 373
Score = 33.6 bits (77), Expect = 0.036
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 7/145 (4%)
Query: 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 62
+E+ + E++ L+ L L+ E L+ L L + EL L+ L
Sbjct: 226 EEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLL-- 283
Query: 63 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS---ELHGLKSELHGL 119
EL L L+ E+ L+ EL GL++ L L+ L LKS L L+ +L L
Sbjct: 284 --EELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKL 341
Query: 120 KSELHGLKSELHGLKSELHGLKSEL 144
+SEL L E + L L EL
Sbjct: 342 ESELEELAEEKNELAKLLEERLKEL 366
Score = 30.9 bits (70), Expect = 0.25
Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
KE +K E + E L+ E+ L+ L L+ E L+ L L
Sbjct: 211 ELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALK 270
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
+ EL L+ L EL L L+ E+ L+ EL GL++ L L+ L LKS
Sbjct: 271 IREEELRELERLL----EELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKS 326
Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
L+ L L+ +L L+SEL
Sbjct: 327 ----LEERLEKLEEKLEKLESEL 345
Score = 27.8 bits (62), Expect = 2.6
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 3/137 (2%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGL--KSELHGLKSELHGLKSELHGLKSELHGLKS 58
++ +K+ EL+ S+L L L ++EL + EL +L+ L++
Sbjct: 595 LKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQA 654
Query: 59 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 118
L L+ ++ L++E+ + + +L EL L+ EL L+ EL L +L
Sbjct: 655 ALEELEEKVEELEAEIRRELQRIENEE-QLEEKLEELEQLEEELEQLREELEELLKKLGE 713
Query: 119 LKSELHGLKSELHGLKS 135
++ + L+S L+
Sbjct: 714 IEQLIEELESRKAELEE 730
>gnl|CDD|225888 COG3352, FlaC, Putative archaeal flagellar protein C [Cell motility
and secretion].
Length = 157
Score = 33.3 bits (76), Expect = 0.022
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60
M R +++L +K E+ G K +L +K EL L+ + L S + + + S+
Sbjct: 50 MERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKT 109
Query: 61 -HGLKSELHGLKSELHGLKSELHGLKSELHGLK 92
+ + L+ +++ LK + + +L L
Sbjct: 110 PQESRGIVEELEEQVNELKMIVEMVIKDLRELY 142
Score = 31.4 bits (71), Expect = 0.11
Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 1/130 (0%)
Query: 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 65
K +E +S + E + E + + + ++++L +K E+ G K
Sbjct: 13 KEATEEPQQESSDEEKQVEAIHSRVENGIDNEVIDAIMERMTDIENDLGKVKIEIEGQKK 72
Query: 66 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL-HGLKSELHGLKSELHGLKSELH 124
+L +K EL L+ + L S + + + S+ + + L+ +++ LK +
Sbjct: 73 QLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVE 132
Query: 125 GLKSELHGLK 134
+ +L L
Sbjct: 133 MVIKDLRELY 142
Score = 31.0 bits (70), Expect = 0.13
Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 1/128 (0%)
Query: 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 70
LD LK + +E +S + E + E + + + ++++L +
Sbjct: 4 LDNLKKLVKKEATEEPQQESSDEEKQVEAIHSRVENGIDNEVIDAIMERMTDIENDLGKV 63
Query: 71 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL-HGLKSELHGLKSE 129
K E+ G K +L +K EL L+ + L S + + + S+ + + L+ +
Sbjct: 64 KIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQ 123
Query: 130 LHGLKSEL 137
++ LK +
Sbjct: 124 VNELKMIV 131
Score = 26.8 bits (59), Expect = 4.4
Identities = 20/106 (18%), Positives = 42/106 (39%)
Query: 39 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 98
L LK + +E +S + E + E + + + ++++L +
Sbjct: 4 LDNLKKLVKKEATEEPQQESSDEEKQVEAIHSRVENGIDNEVIDAIMERMTDIENDLGKV 63
Query: 99 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144
K E+ G K +L +K EL L+ + L S + + + S+
Sbjct: 64 KIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKT 109
>gnl|CDD|119001 pfam10481, Cenp-F_N, Cenp-F N-terminal domain. Mitosin or
centromere-associated protein-F (Cenp-F) is found bound
across the centromere as one of the proteins of the
outer layer of the kinetochore. Most of the
kinetochore/centromere functions appear to depend upon
binding of the C-terminal par to f the molecule, whereas
the N-terminal part, here, may be a cytoplasmic player
in controlling the function of microtubules and dynein.
Length = 288
Score = 33.2 bits (75), Expect = 0.042
Identities = 26/94 (27%), Positives = 48/94 (51%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
+ K++R+ +LD L++ L K ++ K+E LK E L L+ + EL
Sbjct: 32 KEKQQRQFQLDSLEAALQKQKQKVENEKTEGANLKRENQRLMEICEHLEKTKQKISHELQ 91
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95
+S+++ + +L+ K ++ L+ EL KSEL
Sbjct: 92 VKESQVNFQEGQLNSCKKQIEKLEQELKRCKSEL 125
Score = 32.5 bits (73), Expect = 0.071
Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60
+++ ++ + +LD LK E + +L L++ L K ++ K+E LK E L
Sbjct: 17 LQKIQELEGQLDKLKKEKQQRQFQLDSLEAALQKQKQKVENEKTEGANLKRENQRLMEIC 76
Query: 61 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 109
L+ + EL +S+++ + +L+ K ++ L+ EL KSEL
Sbjct: 77 EHLEKTKQKISHELQVKESQVNFQEGQLNSCKKQIEKLEQELKRCKSEL 125
Score = 31.3 bits (70), Expect = 0.18
Identities = 28/107 (26%), Positives = 51/107 (47%)
Query: 17 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 76
++ L+ +L LK E + +L L++ L K ++ K+E LK E L
Sbjct: 19 KIQELEGQLDKLKKEKQQRQFQLDSLEAALQKQKQKVENEKTEGANLKRENQRLMEICEH 78
Query: 77 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123
L+ + EL +S+++ + +L+ K ++ L+ EL KSEL
Sbjct: 79 LEKTKQKISHELQVKESQVNFQEGQLNSCKKQIEKLEQELKRCKSEL 125
Score = 31.3 bits (70), Expect = 0.18
Identities = 28/107 (26%), Positives = 51/107 (47%)
Query: 24 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 83
++ L+ +L LK E + +L L++ L K ++ K+E LK E L
Sbjct: 19 KIQELEGQLDKLKKEKQQRQFQLDSLEAALQKQKQKVENEKTEGANLKRENQRLMEICEH 78
Query: 84 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130
L+ + EL +S+++ + +L+ K ++ L+ EL KSEL
Sbjct: 79 LEKTKQKISHELQVKESQVNFQEGQLNSCKKQIEKLEQELKRCKSEL 125
Score = 31.3 bits (70), Expect = 0.18
Identities = 28/103 (27%), Positives = 49/103 (47%)
Query: 14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 73
L+ +L LK E + +L L++ L K ++ K+E LK E L L+
Sbjct: 23 LEGQLDKLKKEKQQRQFQLDSLEAALQKQKQKVENEKTEGANLKRENQRLMEICEHLEKT 82
Query: 74 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 116
+ EL +S+++ + +L+ K ++ L+ EL KSEL
Sbjct: 83 KQKISHELQVKESQVNFQEGQLNSCKKQIEKLEQELKRCKSEL 125
>gnl|CDD|116408 pfam07794, DUF1633, Protein of unknown function (DUF1633). This
family contains sequences derived from a group of
hypothetical proteins expressed by Arabidopsis thaliana.
These sequences are highly similar and the region
concerned is about 100 residues long.
Length = 698
Score = 33.3 bits (75), Expect = 0.047
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 73
++ G+ + LK EL K G ++ ++ E GL+++ ++++H L+ +
Sbjct: 475 VRFGAEGIVPGIERLKIELSTSKDLEKGYAEKIGFMEMEFGGLEADKQMARNQIHRLEEK 534
Query: 74 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 133
L ++ L S G K +H K EL +L L G+K + K E L
Sbjct: 535 KDELSKKVLDLTSIAQGAKKAVHDAKVELAAAYLKL------LAGIKDKWVA-KKEFTVL 587
Query: 134 KSELHGLKSELGL 146
+ + ++S L L
Sbjct: 588 EGQAAEVESNLAL 600
Score = 32.2 bits (72), Expect = 0.094
Identities = 27/123 (21%), Positives = 53/123 (43%)
Query: 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
+ +G+ + LK EL K G ++ ++ E GL+++ ++++H L+ +
Sbjct: 476 RFGAEGIVPGIERLKIELSTSKDLEKGYAEKIGFMEMEFGGLEADKQMARNQIHRLEEKK 535
Query: 68 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127
L ++ L S G K +H K EL +L + K E L+ + ++
Sbjct: 536 DELSKKVLDLTSIAQGAKKAVHDAKVELAAAYLKLLAGIKDKWVAKKEFTVLEGQAAEVE 595
Query: 128 SEL 130
S L
Sbjct: 596 SNL 598
Score = 31.0 bits (69), Expect = 0.28
Identities = 26/112 (23%), Positives = 49/112 (43%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
E+ K EL K G ++ ++ E GL+++ ++++H L+ + L ++ L
Sbjct: 487 ERLKIELSTSKDLEKGYAEKIGFMEMEFGGLEADKQMARNQIHRLEEKKDELSKKVLDLT 546
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 116
S G K +H K EL +L + K E L+ + ++S L
Sbjct: 547 SIAQGAKKAVHDAKVELAAAYLKLLAGIKDKWVAKKEFTVLEGQAAEVESNL 598
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 32.7 bits (75), Expect = 0.061
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 7/149 (4%)
Query: 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL--KSEL 60
E+R+ EL+ L++E+ L+ + + E L E+ L+ L L+ E L ++ L
Sbjct: 245 EHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGL 304
Query: 61 HGLKSE-----LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 115
+E L+ L+ L + E L+ + L+ L+ E
Sbjct: 305 DDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREE 364
Query: 116 LHGLKSELHGLKSELHGLKSELHGLKSEL 144
L+SEL + + + E+ L+ E+
Sbjct: 365 AAELESELEEAREAVEDRREEIEELEEEI 393
Score = 29.6 bits (67), Expect = 0.69
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 3/126 (2%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
E R+ EL+ EL + L + E L+ + L+ L+ E L+
Sbjct: 313 EARREELEDRDEEL---RDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE 369
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
SEL + + + E+ L+ E+ L+ +L + L L+ E L+
Sbjct: 370 SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA 429
Query: 125 GLKSEL 130
L++ L
Sbjct: 430 ELEATL 435
Score = 28.5 bits (64), Expect = 1.6
Identities = 24/121 (19%), Positives = 48/121 (39%)
Query: 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 62
R+E+ + + L+ L + E L+ + L+ L+ E L+SEL
Sbjct: 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEE 374
Query: 63 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122
+ + + E+ L+ E+ L+ +L + L L+ E L+ L++
Sbjct: 375 AREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEAT 434
Query: 123 L 123
L
Sbjct: 435 L 435
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 32.5 bits (75), Expect = 0.063
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 51
R E + L+ ++ L+ +L L++E L+ EL LKSEL LKS
Sbjct: 2 RLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 29.8 bits (68), Expect = 0.58
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 58
L+ L+ L+ ++ L+ +L L++E L+ EL LKSEL LKS
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 29.4 bits (67), Expect = 0.67
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 16 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 65
L L+ L+ ++ L+ +L L++E L+ EL LKSEL LKS
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 29.4 bits (67), Expect = 0.67
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 23 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 72
L L+ L+ ++ L+ +L L++E L+ EL LKSEL LKS
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 29.4 bits (67), Expect = 0.67
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 30 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 79
L L+ L+ ++ L+ +L L++E L+ EL LKSEL LKS
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 29.4 bits (67), Expect = 0.67
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 37 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 86
L L+ L+ ++ L+ +L L++E L+ EL LKSEL LKS
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 29.4 bits (67), Expect = 0.67
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 44 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 93
L L+ L+ ++ L+ +L L++E L+ EL LKSEL LKS
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 29.4 bits (67), Expect = 0.67
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 51 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 100
L L+ L+ ++ L+ +L L++E L+ EL LKSEL LKS
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 29.4 bits (67), Expect = 0.67
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 58 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 107
L L+ L+ ++ L+ +L L++E L+ EL LKSEL LKS
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 29.4 bits (67), Expect = 0.67
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 114
L L+ L+ ++ L+ +L L++E L+ EL LKSEL LKS
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 29.4 bits (67), Expect = 0.67
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 72 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
L L+ L+ ++ L+ +L L++E L+ EL LKSEL LKS
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 29.4 bits (67), Expect = 0.67
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 79 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 128
L L+ L+ ++ L+ +L L++E L+ EL LKSEL LKS
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 29.4 bits (67), Expect = 0.67
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 86 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 135
L L+ L+ ++ L+ +L L++E L+ EL LKSEL LKS
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 29.4 bits (67), Expect = 0.67
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 93 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 142
L L+ L+ ++ L+ +L L++E L+ EL LKSEL LKS
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 26.7 bits (60), Expect = 6.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKS 37
+ + + +L L++E L+ EL LKSEL LKS
Sbjct: 14 EEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
Score = 26.7 bits (60), Expect = 6.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 100 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144
L L+ L+ ++ L+ +L L++E L+ EL LKSEL
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSEL 45
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827).
This family consists of several plant proteins of
unknown function. Several sequences in this family are
described as being "myosin heavy chain-like".
Length = 484
Score = 32.7 bits (74), Expect = 0.074
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60
++++ + + + EL K+ L E L++ + LK EL K EL L+ +
Sbjct: 244 LQKEISIMASVASVLKELEEAKANLEKAAEEEKSLRNLVESLKQELEEEKKELEELREKE 303
Query: 61 HGLKSELHGLKSELHGLKSELHG-LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 119
+ L++EL+ KSE + ++ + +L SE + E + EL L
Sbjct: 304 GEAEEAASSLEAELNRTKSEKESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKL 363
Query: 120 KSE 122
K E
Sbjct: 364 KEE 366
Score = 30.3 bits (68), Expect = 0.44
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 4/146 (2%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL-HGLKSELHGLKSELHGL 63
EK+ EL + H E + K + + EL + EL L
Sbjct: 162 EKKVEELTKEIIAMKESLERAHAAHLEAEEERIGAALEKDQDRETYEKELKEAEKELERL 221
Query: 64 KSELHGLKS--ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
K +L K +L +EL L+ E+ + S + + EL K+ L E L++
Sbjct: 222 KQDLDPEKDLEKLAEASAELESLQKEISIMAS-VASVLKELEEAKANLEKAAEEEKSLRN 280
Query: 122 ELHGLKSELHGLKSELHGLKSELGLN 147
+ LK EL K EL L+ + G
Sbjct: 281 LVESLKQELEEEKKELEELREKEGEA 306
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 32.0 bits (73), Expect = 0.099
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60
+ KE+ + + + E+ + + L+ + L+ E LK EL LK E+
Sbjct: 395 SKVKEEERPREK--EGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREI 452
Query: 61 HGLKSELHGLKSEL---HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 113
L+SEL + E+ E+ + L+ EL K + L+ +L L+
Sbjct: 453 EKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508
Score = 26.2 bits (58), Expect = 9.3
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 59 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL-- 116
+ E+ + + L+ + L+ E LK EL LK E+ L+SEL + E+
Sbjct: 409 TEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD 468
Query: 117 -HGLKSELHGLKSELHGLKSEL 137
E+ + L+ EL
Sbjct: 469 KVRKDREIRARDRRIERLEKEL 490
>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper.
Length = 65
Score = 29.8 bits (68), Expect = 0.13
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 47
R +E++K+E++ L+ ++ L++E LK E+ L+ EL LKSEL
Sbjct: 19 RSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 31.8 bits (72), Expect = 0.14
Identities = 34/130 (26%), Positives = 54/130 (41%)
Query: 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 68
E +K GLKS + S + EL LKSE L EL K +L
Sbjct: 559 VEASEIKKNFLGLKSSEKEINSPDEVKGAVCISTLEELETLKSEKENLDGELSKCKDDLE 618
Query: 69 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 128
K++L + +L LKSEL + +++L + L+ L++E L+
Sbjct: 619 ESKNKLQETEKKLEELKSELDASQESNSLAETQLKCMVESYESLELRAKDLEAEHKSLQE 678
Query: 129 ELHGLKSELH 138
++ L+ EL
Sbjct: 679 KISSLEDELE 688
Score = 31.5 bits (71), Expect = 0.15
Identities = 33/128 (25%), Positives = 53/128 (41%)
Query: 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 63
+ K GLKS + S + EL LKSE L EL K +L
Sbjct: 561 ASEIKKNFLGLKSSEKEINSPDEVKGAVCISTLEELETLKSEKENLDGELSKCKDDLEES 620
Query: 64 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123
K++L + +L LKSEL + +++L + L+ L++E L+ ++
Sbjct: 621 KNKLQETEKKLEELKSELDASQESNSLAETQLKCMVESYESLELRAKDLEAEHKSLQEKI 680
Query: 124 HGLKSELH 131
L+ EL
Sbjct: 681 SSLEDELE 688
Score = 31.1 bits (70), Expect = 0.24
Identities = 32/134 (23%), Positives = 59/134 (44%)
Query: 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 68
EL+ LKSE L EL K +L K++L + +L LKSEL + +++L
Sbjct: 594 EELETLKSEKENLDGELSKCKDDLEESKNKLQETEKKLEELKSELDASQESNSLAETQLK 653
Query: 69 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 128
+ L+ L++E L+ ++ L+ EL + L ++ L+ ++ +
Sbjct: 654 CMVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQ 713
Query: 129 ELHGLKSELHGLKS 142
E + K + K
Sbjct: 714 EENMQKLDEEEQKI 727
Score = 30.3 bits (68), Expect = 0.43
Identities = 33/124 (26%), Positives = 53/124 (42%)
Query: 21 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 80
+K GLKS + S + EL LKSE L EL K +L K++
Sbjct: 564 IKKNFLGLKSSEKEINSPDEVKGAVCISTLEELETLKSEKENLDGELSKCKDDLEESKNK 623
Query: 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140
L + +L LKSEL + +++L + L+ L++E L+ ++ L
Sbjct: 624 LQETEKKLEELKSELDASQESNSLAETQLKCMVESYESLELRAKDLEAEHKSLQEKISSL 683
Query: 141 KSEL 144
+ EL
Sbjct: 684 EDEL 687
Score = 29.9 bits (67), Expect = 0.58
Identities = 30/129 (23%), Positives = 55/129 (42%)
Query: 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 68
S + + EL LKSE L EL K +L K++L + +L LKSEL
Sbjct: 580 SPDEVKGAVCISTLEELETLKSEKENLDGELSKCKDDLEESKNKLQETEKKLEELKSELD 639
Query: 69 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 128
+ +++L + L+ L++E L+ ++ L+ EL + L +
Sbjct: 640 ASQESNSLAETQLKCMVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIA 699
Query: 129 ELHGLKSEL 137
+ L+ ++
Sbjct: 700 KCRELEEKI 708
Score = 29.9 bits (67), Expect = 0.62
Identities = 29/115 (25%), Positives = 52/115 (45%)
Query: 30 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 89
EL LKSE L EL K +L K++L + +L LKSEL + +++L
Sbjct: 594 EELETLKSEKENLDGELSKCKDDLEESKNKLQETEKKLEELKSELDASQESNSLAETQLK 653
Query: 90 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144
+ L+ L++E L+ ++ L+ EL + L ++ L+ ++
Sbjct: 654 CMVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKI 708
Score = 29.5 bits (66), Expect = 0.87
Identities = 30/131 (22%), Positives = 57/131 (43%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
E KSE + L EL K +L K++L + +L LKSEL + +++L +
Sbjct: 597 ETLKSEKENLDGELSKCKDDLEESKNKLQETEKKLEELKSELDASQESNSLAETQLKCMV 656
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
L+ L++E L+ ++ L+ EL + L ++ L+ ++ + E +
Sbjct: 657 ESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEEN 716
Query: 125 GLKSELHGLKS 135
K + K
Sbjct: 717 MQKLDEEEQKI 727
Score = 29.2 bits (65), Expect = 1.0
Identities = 26/100 (26%), Positives = 41/100 (41%)
Query: 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 62
R+E+ + D + + L+ +L L+ EL +E L L +
Sbjct: 65 REEQEQKIQDAATEKTKEWEKVKAELEKKLLELQKELARAAAENDALSRSLQEKSKMIME 124
Query: 63 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 102
L E +SE+ LK+ L + E LK E+H L EL
Sbjct: 125 LSEEKSRAESEIEDLKARLESAEKENSSLKYEVHVLSKEL 164
Score = 27.6 bits (61), Expect = 3.5
Identities = 27/125 (21%), Positives = 53/125 (42%)
Query: 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 63
KE EL K +L K++L + +L LKSEL + +++L + L
Sbjct: 603 KENLDGELSKCKDDLEESKNKLQETEKKLEELKSELDASQESNSLAETQLKCMVESYESL 662
Query: 64 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123
+ L++E L+ ++ L+ EL + L ++ L+ ++ + E + K +
Sbjct: 663 ELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQKLDE 722
Query: 124 HGLKS 128
K
Sbjct: 723 EEQKI 727
Score = 26.8 bits (59), Expect = 6.6
Identities = 23/82 (28%), Positives = 34/82 (41%)
Query: 35 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 94
+ L+ +L L+ EL +E L L + L E +SE+ LK+
Sbjct: 83 WEKVKAELEKKLLELQKELARAAAENDALSRSLQEKSKMIMELSEEKSRAESEIEDLKAR 142
Query: 95 LHGLKSELHGLKSELHGLKSEL 116
L + E LK E+H L EL
Sbjct: 143 LESAEKENSSLKYEVHVLSKEL 164
Score = 26.8 bits (59), Expect = 6.6
Identities = 23/82 (28%), Positives = 34/82 (41%)
Query: 56 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 115
+ L+ +L L+ EL +E L L + L E +SE+ LK+
Sbjct: 83 WEKVKAELEKKLLELQKELARAAAENDALSRSLQEKSKMIMELSEEKSRAESEIEDLKAR 142
Query: 116 LHGLKSELHGLKSELHGLKSEL 137
L + E LK E+H L EL
Sbjct: 143 LESAEKENSSLKYEVHVLSKEL 164
Score = 26.8 bits (59), Expect = 6.6
Identities = 23/82 (28%), Positives = 34/82 (41%)
Query: 63 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122
+ L+ +L L+ EL +E L L + L E +SE+ LK+
Sbjct: 83 WEKVKAELEKKLLELQKELARAAAENDALSRSLQEKSKMIMELSEEKSRAESEIEDLKAR 142
Query: 123 LHGLKSELHGLKSELHGLKSEL 144
L + E LK E+H L EL
Sbjct: 143 LESAEKENSSLKYEVHVLSKEL 164
Score = 26.5 bits (58), Expect = 8.9
Identities = 23/80 (28%), Positives = 35/80 (43%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
+ K + + +L L+ EL +E L L + L E +SE+ LK+ L
Sbjct: 85 KVKAELEKKLLELQKELARAAAENDALSRSLQEKSKMIMELSEEKSRAESEIEDLKARLE 144
Query: 62 GLKSELHGLKSELHGLKSEL 81
+ E LK E+H L EL
Sbjct: 145 SAEKENSSLKYEVHVLSKEL 164
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 31.3 bits (71), Expect = 0.15
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 65
R +L+ L+ EL LK +L L+ EL L+ + L+SEL LK +L L+ L L+
Sbjct: 69 VRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEE 128
Query: 66 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
L L+ + L EL L+ + L+ E+ L+ EL L+ L L+ + L+S L
Sbjct: 129 RLESLEESIKELAKELRELRQD---LREEVEELREELERLQENLQRLQEAIQELQSLLE 184
Score = 30.5 bits (69), Expect = 0.28
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 65
+ +L L+ EL LK +L L+ EL L+ + L+SEL LK +L L+
Sbjct: 62 LKAPVQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRE 121
Query: 66 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 125
L L+ L L+ + L EL L+ + L+ E+ L+ EL L+ L L+ +
Sbjct: 122 LLKSLEERLESLEESIKELAKELRELRQD---LREEVEELREELERLQENLQRLQEAIQE 178
Query: 126 LKSELH 131
L+S L
Sbjct: 179 LQSLLE 184
Score = 30.1 bits (68), Expect = 0.30
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 31 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 90
EL LK +L L+ EL L+ + L+SEL LK +L L+ L L+ L L+ +
Sbjct: 80 ELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKE 139
Query: 91 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 138
L EL L+ + L+ E+ L+ EL L+ L L+ + L+S L
Sbjct: 140 LAKELRELRQD---LREEVEELREELERLQENLQRLQEAIQELQSLLE 184
Score = 29.7 bits (67), Expect = 0.40
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 38 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 97
EL LK +L L+ EL L+ + L+SEL LK +L L+ L L+ L L+ +
Sbjct: 80 ELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKE 139
Query: 98 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144
L EL L+ + L+ E+ L+ EL L+ L L+ + L+S L
Sbjct: 140 LAKELRELRQD---LREEVEELREELERLQENLQRLQEAIQELQSLL 183
>gnl|CDD|191851 pfam07798, DUF1640, Protein of unknown function (DUF1640). This
family consists of sequences derived from hypothetical
eukaryotic proteins. A region approximately 100
residues in length is featured.
Length = 177
Score = 30.7 bits (70), Expect = 0.21
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 8 KSELDGLKSELHGL-KSELHGLKSELHGLKSELHGLKSEL 46
K + LKSEL L KSE L++E LK++L LK+ L
Sbjct: 57 KVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 22 KSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSEL 60
K + LKSEL L KSE L++E LK++L LK+ L
Sbjct: 57 KVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 29 KSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSEL 67
K + LKSEL L KSE L++E LK++L LK+ L
Sbjct: 57 KVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 36 KSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSEL 74
K + LKSEL L KSE L++E LK++L LK+ L
Sbjct: 57 KVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 43 KSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSEL 81
K + LKSEL L KSE L++E LK++L LK+ L
Sbjct: 57 KVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 50 KSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSEL 88
K + LKSEL L KSE L++E LK++L LK+ L
Sbjct: 57 KVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 57 KSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSEL 95
K + LKSEL L KSE L++E LK++L LK+ L
Sbjct: 57 KVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 64 KSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSEL 102
K + LKSEL L KSE L++E LK++L LK+ L
Sbjct: 57 KVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 71 KSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSEL 109
K + LKSEL L KSE L++E LK++L LK+ L
Sbjct: 57 KVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 78 KSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSEL 116
K + LKSEL L KSE L++E LK++L LK+ L
Sbjct: 57 KVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 85 KSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSEL 123
K + LKSEL L KSE L++E LK++L LK+ L
Sbjct: 57 KVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 92 KSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSEL 130
K + LKSEL L KSE L++E LK++L LK+ L
Sbjct: 57 KVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 99 KSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSEL 137
K + LKSEL L KSE L++E LK++L LK+ L
Sbjct: 57 KVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 106 KSELHGLKSELHGL-KSELHGLKSELHGLKSELHGLKSEL 144
K + LKSEL L KSE L++E LK++L LK+ L
Sbjct: 57 KVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
Score = 26.1 bits (58), Expect = 7.9
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 6 KRKSELDGL-KSELHGLKSELHGLKSELHGLKSEL 39
K KSEL L KSE L++E LK++L LK+ L
Sbjct: 62 KLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL 96
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 31.2 bits (71), Expect = 0.23
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 15/145 (10%)
Query: 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSEL 67
SE+ + EL + EL+ ++ LK +L G + L S L + L+ +L
Sbjct: 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQL 263
Query: 68 HGLK---SELH----GLKSELHGL---KSELHGLKSELHGLKSE----LHGLKSELHGLK 113
L+ ++ H K E+ L K E K+ L+ EL +
Sbjct: 264 DALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAE 323
Query: 114 SELHGLKSELHGLKSELHGLKSELH 138
+E+ L++ + L + + L+S L
Sbjct: 324 AEIASLEARVAELTARIERLESLLR 348
Score = 27.7 bits (62), Expect = 3.2
Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 16/131 (12%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSE-LHGLKSELHGLKSELHGLK---SELH--- 54
E ++ D LK +L G + L S L + L+ +L L+ ++ H
Sbjct: 219 ELNE-AIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDV 277
Query: 55 -GLKSELHGL---KSELHGLKSELHGLKSE----LHGLKSELHGLKSELHGLKSELHGLK 106
K E+ L K E K+ L+ EL ++E+ L++ + L
Sbjct: 278 IATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELT 337
Query: 107 SELHGLKSELH 117
+ + L+S L
Sbjct: 338 ARIERLESLLR 348
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 30.4 bits (69), Expect = 0.41
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 17 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 76
+LH ++S+L E L + L E + SEL K EL L + L+
Sbjct: 958 KLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQ 1017
Query: 77 LKSELHGLKSELHGLKSELHGLKSELHGLKSE 108
LK + +EL + +EL LK
Sbjct: 1018 LKELPVEV-AELQSASKIISSESTELSILKPL 1048
Score = 30.4 bits (69), Expect = 0.41
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 45 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 104
+LH ++S+L E L + L E + SEL K EL L + L+
Sbjct: 958 KLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQ 1017
Query: 105 LKSELHGLKSELHGLKSELHGLKSELHGLKSE 136
LK + +EL + +EL LK
Sbjct: 1018 LKELPVEV-AELQSASKIISSESTELSILKPL 1048
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 30.1 bits (68), Expect = 0.49
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 62
R ++R++EL+ L+ ++ L+S + + SE+ L S++ + EL ++ E L+ E
Sbjct: 264 RTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEELEEEYK- 322
Query: 63 LKSELHGL 70
+K L
Sbjct: 323 IKKRTVEL 330
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 29.1 bits (65), Expect = 0.94
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 68
S +D L+ +L EL +K ++ + E+ L E + + + LKS L+
Sbjct: 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALN 242
Query: 69 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 107
EL L+ + +SE+ +S+L + + K
Sbjct: 243 ----ELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKE 277
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 28.8 bits (65), Expect = 1.0
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 25 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 84
L GLK GL+ L G+K + L +L+ + S L+ +L LK E+ L+ L
Sbjct: 145 LEGLK---EGLEENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASLRQ----L 197
Query: 85 KSELHGL-KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 143
EL+ EL + EL L ++ + +L L+ EL L + L ++ L E
Sbjct: 198 ADELNLCDPLELEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLEE 257
Query: 144 L 144
+
Sbjct: 258 I 258
Score = 26.1 bits (58), Expect = 7.7
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS-----------E 52
KE + L+G+K + L +L+ + S L+ +L LK E+ L+ E
Sbjct: 149 KEGLEENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASLRQLADELNLCDPLE 208
Query: 53 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 112
L + EL L ++ + +L L+ EL L + L ++ L E+ +
Sbjct: 209 LEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLEEIAEAEKIR--E 266
Query: 113 KSELHGLKSELHGLKSELHGLKSELHGLK 141
+ K E+ LK+++ L+ L G K
Sbjct: 267 ECRGWSAK-EISKLKAKVSLLQK-LTGWK 293
>gnl|CDD|151039 pfam10473, Cenp-F_leu_zip, Leucine-rich repeats of kinetochore
protein Cenp-F/LEK1. Cenp-F, a centromeric kinetochore,
microtubule-binding protein consisting of two
1,600-amino acid-long coils, is essential for the full
functioning of the mitotic checkpoint pathway. There are
several leucine-rich repeats along the sequence of LEK1
that are considered to be zippers, though they do not
appear to be binding DNA directly in this instance.
Length = 140
Score = 28.2 bits (63), Expect = 1.1
Identities = 21/97 (21%), Positives = 44/97 (45%)
Query: 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 65
+ + E D LK ++ L+ EL + + E K+E+ LK+++ + L L+
Sbjct: 14 ESEREADLLKDKVENLERELEMSEENQELVILEAENSKAEVETLKTKIEEMAESLKDLEL 73
Query: 66 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 102
+L ++SE L +L + + L+ ++ L
Sbjct: 74 DLVTVRSEKENLTKQLQEKQERVSELEKLNSSTENLL 110
Score = 26.7 bits (59), Expect = 3.6
Identities = 21/101 (20%), Positives = 44/101 (43%)
Query: 44 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 103
+L + E LK ++ L+ EL + + E K+E+ LK+++ + L
Sbjct: 10 EKLKESEREADLLKDKVENLERELEMSEENQELVILEAENSKAEVETLKTKIEEMAESLK 69
Query: 104 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144
L+ +L ++SE L +L + + L+ ++ L
Sbjct: 70 DLELDLVTVRSEKENLTKQLQEKQERVSELEKLNSSTENLL 110
Score = 26.7 bits (59), Expect = 3.7
Identities = 21/101 (20%), Positives = 44/101 (43%)
Query: 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 68
+L + E LK ++ L+ EL + + E K+E+ LK+++ + L
Sbjct: 10 EKLKESEREADLLKDKVENLERELEMSEENQELVILEAENSKAEVETLKTKIEEMAESLK 69
Query: 69 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 109
L+ +L ++SE L +L + + L+ ++ L
Sbjct: 70 DLELDLVTVRSEKENLTKQLQEKQERVSELEKLNSSTENLL 110
Score = 26.7 bits (59), Expect = 4.2
Identities = 19/81 (23%), Positives = 37/81 (45%)
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
+L + E LK ++ L+ EL + + E K+E+ LK+++ + L
Sbjct: 10 EKLKESEREADLLKDKVENLERELEMSEENQELVILEAENSKAEVETLKTKIEEMAESLK 69
Query: 125 GLKSELHGLKSELHGLKSELG 145
L+ +L ++SE L +L
Sbjct: 70 DLELDLVTVRSEKENLTKQLQ 90
Score = 26.3 bits (58), Expect = 5.4
Identities = 20/95 (21%), Positives = 41/95 (43%)
Query: 51 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 110
+L + E LK ++ L+ EL + + E K+E+ LK+++ + L
Sbjct: 10 EKLKESEREADLLKDKVENLERELEMSEENQELVILEAENSKAEVETLKTKIEEMAESLK 69
Query: 111 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145
L+ +L ++SE L +L + + L+
Sbjct: 70 DLELDLVTVRSEKENLTKQLQEKQERVSELEKLNS 104
Score = 25.9 bits (57), Expect = 8.1
Identities = 19/94 (20%), Positives = 42/94 (44%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
R + K +++ L+ EL + + E K+E+ LK+++ + L L+ +L
Sbjct: 17 READLLKDKVENLERELEMSEENQELVILEAENSKAEVETLKTKIEEMAESLKDLELDLV 76
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95
++SE L +L + + L+ ++ L
Sbjct: 77 TVRSEKENLTKQLQEKQERVSELEKLNSSTENLL 110
>gnl|CDD|147323 pfam05082, Rop-like, Rop-like. This family contains several
uncharacterized bacterial proteins. These proteins are
found in nitrogen fixation operons so are likely to
play some role in this process. They consist of two
alpha helices which are joined by a four residue
linker. The helices form an antiparallel bundle and
cross towards their termini. They are likely to form a
rod-like dimer. They have structural similarity to the
regulatory protein Rop, pfam01815.
Length = 66
Score = 26.8 bits (60), Expect = 1.5
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
S+++ LK E+ L S K +LH L +L E+ + + + +EL + EL
Sbjct: 2 SDIEELKKEVKKLNSRATQAKMDLHDLAEDLPINWEEILEVAQKTYDAFAELDEARKEL 60
Score = 24.5 bits (54), Expect = 8.6
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 44 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 102
S++ LK E+ L S K +LH L +L E+ + + + +EL + EL
Sbjct: 2 SDIEELKKEVKKLNSRATQAKMDLHDLAEDLPINWEEILEVAQKTYDAFAELDEARKEL 60
Score = 24.5 bits (54), Expect = 8.6
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 79 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 137
S++ LK E+ L S K +LH L +L E+ + + + +EL + EL
Sbjct: 2 SDIEELKKEVKKLNSRATQAKMDLHDLAEDLPINWEEILEVAQKTYDAFAELDEARKEL 60
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 28.2 bits (63), Expect = 1.9
Identities = 17/97 (17%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGL----KSELHGLKSELHGLKSELHGL 56
+ + ++ + EL+ L++ L++ L + + + L +++ L +L
Sbjct: 229 LEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRA 288
Query: 57 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 93
+ EL + E L + L+ E L++ L L+
Sbjct: 289 RDELETAREEERELDARTEALEREADALRTRLEALQG 325
Score = 27.5 bits (61), Expect = 3.9
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGL----KSELHGLKSELHGLKSELHGLKSE 66
LD + EL L++ L++ L + + + L +++ L +L + E
Sbjct: 232 LDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDE 291
Query: 67 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 100
L + E L + L+ E L++ L L+
Sbjct: 292 LETAREEERELDARTEALEREADALRTRLEALQG 325
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 27.9 bits (62), Expect = 2.5
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Query: 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 70
L+ L SEL + E K L L+S+ + + L SEL LK E L EL L
Sbjct: 31 LERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEA-LDSELDELKKEEERLLDELEEL 89
Query: 71 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130
+ E L EL L+ E L++E E + L+ L L+ + ++L
Sbjct: 90 EKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLEDNLQSLELQYEYSLNQL 149
Query: 131 HGLK 134
L+
Sbjct: 150 DKLR 153
Score = 27.5 bits (61), Expect = 2.9
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
E+ SEL + E K L L+S+ + + L SEL LK E L EL L+
Sbjct: 32 ERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEA-LDSELDELKKEEERLLDELEELE 90
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
E L EL L+ E L++E E + L+ L L+ + ++L
Sbjct: 91 KEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLEDNLQSLELQYEYSLNQLD 150
Query: 125 GLK 127
L+
Sbjct: 151 KLR 153
Score = 26.8 bits (59), Expect = 6.4
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Query: 21 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 80
L SEL + E K L L+S+ + + L SEL LK E L EL L+ E
Sbjct: 34 LDSELRDAEKERDTYKQYLSKLESQNVEISNYEA-LDSELDELKKEEERLLDELEELEKE 92
Query: 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140
L EL L+ E L++E E + L+ L L+ + ++L L
Sbjct: 93 DDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLEDNLQSLELQYEYSLNQLDKL 152
Query: 141 K 141
+
Sbjct: 153 R 153
Score = 26.4 bits (58), Expect = 8.6
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
Query: 35 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 94
L SEL + E K L L+S+ + + L SEL LK E L EL L+ E
Sbjct: 34 LDSELRDAEKERDTYKQYLSKLESQNVEISNYEA-LDSELDELKKEEERLLDELEELEKE 92
Query: 95 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLN 147
L EL L+ E L++E E + L+ L L+ + +
Sbjct: 93 DDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLEDNLQSLELQYEYS 145
>gnl|CDD|114908 pfam06216, RTBV_P46, Rice tungro bacilliform virus P46 protein.
This family consists of several Rice tungro bacilliform
virus P46 proteins. The function of this family is
unknown.
Length = 392
Score = 27.7 bits (61), Expect = 2.7
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL 146
+LH + ++ + E+ K E L ++ LK + LK+++ +K + GL+ L
Sbjct: 58 KLHIIADHIYLKEFEIESYKLECEKLNDQVSHLKKQNEELKAQIAEMKDIIEGLREPLKK 117
Query: 147 NCYLT 151
Y T
Sbjct: 118 PIYTT 122
>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1).
Synaptonemal complex protein 1 (SCP-1) is the major
component of the transverse filaments of the
synaptonemal complex. Synaptonemal complexes are
structures that are formed between homologous
chromosomes during meiotic prophase.
Length = 787
Score = 27.4 bits (60), Expect = 4.2
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 3/137 (2%)
Query: 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
K + + + EL G + EL L L + E+H L+ +L +K+ E+ LK+EL
Sbjct: 424 KKQFEKIAEELKGKEQELIFL---LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTEL 480
Query: 68 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127
K + L + L E L E + EL + ++ K + + ++ L+
Sbjct: 481 EKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLE 540
Query: 128 SELHGLKSELHGLKSEL 144
+ L+ EL ++ E
Sbjct: 541 EKEMNLRDELESVREEF 557
Score = 27.0 bits (59), Expect = 5.3
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
++ EK EL G + EL L L + E+H L+ +L +K+ E+ LK+EL
Sbjct: 425 KQFEKIAEELKGKEQELIFL---LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELE 481
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
K + L + L E L E + EL + ++ K + + ++ L+
Sbjct: 482 KEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEE 541
Query: 122 ELHGLKSELHGLKSEL 137
+ L+ EL ++ E
Sbjct: 542 KEMNLRDELESVREEF 557
>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD
proteins consist of three coiled-coiled domains and are
involved in dynein-mediated minus end-directed transport
from the Golgi apparatus to the endoplasmic reticulum
(ER). For full functioning they bind with GSK-3beta
pfam05350 to maintain the anchoring of microtubules to
the centromere. It appears that amino-acid residues
437-617 of BicD and the kinase activity of GSK-3 are
necessary for the formation of a complex between BicD
and GSK-3beta in intact cells.
Length = 711
Score = 27.1 bits (60), Expect = 4.5
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 70
+ L++EL L++EL +++E L S LK E L+ + L+ E+ K L
Sbjct: 36 ILELQAELKQLRAELSNVQAENERLSSLSQELKEENEMLELQRGRLRDEIKEYKFREARL 95
Query: 71 KSELHGLKSELHGLKSELHGLKS---ELHGLKSELHGLKSELHGLKSEL 116
+ L+ E L+ ++ L+ E GLK E+ L+ E L S+L
Sbjct: 96 LQDYSELEEENISLQKQVSVLRQSQVEFEGLKHEIRRLEEETELLNSQL 144
Score = 27.1 bits (60), Expect = 4.7
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 42 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 101
L++EL L++EL +++E L S LK E L+ + L+ E+ K L +
Sbjct: 39 LQAELKQLRAELSNVQAENERLSSLSQELKEENEMLELQRGRLRDEIKEYKFREARLLQD 98
Query: 102 LHGLKSELHGLKSELHGLKS---ELHGLKSELHGLKSELHGLKSEL 144
L+ E L+ ++ L+ E GLK E+ L+ E L S+L
Sbjct: 99 YSELEEENISLQKQVSVLRQSQVEFEGLKHEIRRLEEETELLNSQL 144
>gnl|CDD|148614 pfam07106, TBPIP, Tat binding protein 1(TBP-1)-interacting protein
(TBPIP). This family consists of several eukaryotic
TBP-1 interacting protein (TBPIP) sequences. TBP-1 has
been demonstrated to interact with the human
immunodeficiency virus type 1 (HIV-1) viral protein Tat,
then modulate the essential replication process of HIV.
In addition, TBP-1 has been shown to be a component of
the 26S proteasome, a basic multiprotein complex that
degrades ubiquitinated proteins in an ATP-dependent
fashion. Human TBPIP interacts with human TBP-1 then
modulates the inhibitory action of human TBP-1 on
HIV-Tat-mediated transactivation.
Length = 169
Score = 26.5 bits (59), Expect = 4.8
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG--LKSELHGLKSELHGLKSE 66
EL+ L E+ L+ E+ LK + L+ EL L S+L L+ E+ LK E+ ++ +
Sbjct: 72 EELNKLDMEIEELREEVQLLKQDCSTLEIELKSLTSDLTTEELQEEIQELKKEVREIEEK 131
Query: 67 LHGLKS 72
L L+
Sbjct: 132 LESLEE 137
Score = 26.5 bits (59), Expect = 5.3
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 37 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG--LKSELHGLKSELHGLKSE 94
EL+ L E+ L+ E+ LK + L+ EL L S+L L+ E+ LK E+ ++ +
Sbjct: 72 EELNKLDMEIEELREEVQLLKQDCSTLEIELKSLTSDLTTEELQEEIQELKKEVREIEEK 131
Query: 95 LHGLKS 100
L L+
Sbjct: 132 LESLEE 137
Score = 26.5 bits (59), Expect = 5.3
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG--LKSELHGLKSELHGLKSE 122
EL+ L E+ L+ E+ LK + L+ EL L S+L L+ E+ LK E+ ++ +
Sbjct: 72 EELNKLDMEIEELREEVQLLKQDCSTLEIELKSLTSDLTTEELQEEIQELKKEVREIEEK 131
Query: 123 LHGLKS 128
L L+
Sbjct: 132 LESLEE 137
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 26.9 bits (59), Expect = 5.2
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 4/148 (2%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
R K + K L + + ++E L+ E L +L L+ L + + L EL
Sbjct: 255 RMKGELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELA 314
Query: 62 GLKSELHGLKSELHGLK---SELHGLKSELH-GLKSELHGLKSELHGLKSELHGLKSELH 117
L S +ELH + +++ S+L+ LK E L+ K +
Sbjct: 315 SLGSLRDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQ 374
Query: 118 GLKSELHGLKSELHGLKSELHGLKSELG 145
L +EL L+ L +S+ L+ ELG
Sbjct: 375 KLSAELLKLEEWLQEERSQREKLEVELG 402
Score = 26.1 bits (57), Expect = 8.8
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 23 SELHGLK---SELHGLKSELH-GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 78
+ELH + +++ S+L+ LK E L+ K + L +EL L+
Sbjct: 325 AELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAELLKLE 384
Query: 79 SELHGLKSELHGLKSELHGLKS----ELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 134
L +S+ L+ EL K +L + EL L+S L L+ E L+ E L
Sbjct: 385 EWLQEERSQREKLEVELGIEKDCNRVQLSENRRELSELRSALRVLQKEKEQLQEEKQELL 444
Query: 135 SELHGLKSEL 144
+ L+ L
Sbjct: 445 DYIRVLELRL 454
>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding. This family
is found in mammals where it is localised at cell-cell
adherens junctions, and in Sch. pombe and other fungi
where it anchors spindle-pole bodies to spindle
microtubules. It is a coiled-coil structure, and in
pombe, it is required for anchoring the minus end of
spindle microtubules to the centrosome equivalent, the
spindle-pole body. The name ADIP derives from the family
being composed of Afadin- and alpha -Actinin-Binding
Proteins Localised at Cell-Cell Adherens Junctions.
Length = 149
Score = 26.5 bits (59), Expect = 5.3
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 17 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 76
L L++E+ L++ + LK++L L+ EL L+++ L+ +L L+ +L K E+
Sbjct: 58 TLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEEVQR 117
Query: 77 LKS 79
LK+
Sbjct: 118 LKN 120
Score = 26.5 bits (59), Expect = 5.3
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 45 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 104
L L++E+ L++ + LK++L L+ EL L+++ L+ +L L+ +L K E+
Sbjct: 58 TLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEEVQR 117
Query: 105 LKS 107
LK+
Sbjct: 118 LKN 120
Score = 26.5 bits (59), Expect = 5.3
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 73 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 132
L L++E+ L++ + LK++L L+ EL L+++ L+ +L L+ +L K E+
Sbjct: 58 TLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEEVQR 117
Query: 133 LKS 135
LK+
Sbjct: 118 LKN 120
Score = 26.5 bits (59), Expect = 5.3
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 80 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 139
L L++E+ L++ + LK++L L+ EL L+++ L+ +L L+ +L K E+
Sbjct: 58 TLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEEVQR 117
Query: 140 LKS 142
LK+
Sbjct: 118 LKN 120
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 26.8 bits (59), Expect = 5.3
Identities = 19/76 (25%), Positives = 38/76 (50%)
Query: 70 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 129
L+ ++ L++EL + L++++ L S LKS+L LK E L+++L+ + S
Sbjct: 411 LEQDIKKLQAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSA 470
Query: 130 LHGLKSELHGLKSELG 145
K + ++ L
Sbjct: 471 KQKDKQSMQSMEKRLK 486
Score = 26.4 bits (58), Expect = 8.1
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 68
S ++ L+ ++ L++EL + L++++ L S LKS+L LK E L+++L+
Sbjct: 406 SAIERLEQDIKKLQAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLN 465
Query: 69 GLKS 72
+ S
Sbjct: 466 SMVS 469
Score = 26.4 bits (58), Expect = 9.2
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 42 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 100
L+ ++ L++EL + L++++ L S LKS+L LK E L+++L+ + S
Sbjct: 411 LEQDIKKLQAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVS 469
>gnl|CDD|221757 pfam12761, End3, Actin cytoskeleton-regulatory complex protein
END3. Endocytosis is accomplished through the
sequential recruitment at endocytic sites of proteins
that drive cargo sorting, membrane invagination and
vesicle release. End3p is part of the coat module
protein complex Pan1, along with Pan1p, Sla1p, and
Sla2p. The proteins in this complex are regulated by
phosphorylation events. End3p also regulates the
cortical actin cytoskeleton. The subunits of the Pan1
complex are homologous to mammalian intersectin.
Length = 193
Score = 26.6 bits (59), Expect = 5.5
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL----KSELHGLKSELHG 69
L+ EL L+S+L + E K +K EL L +++L L
Sbjct: 101 LRRELAELESKLSKAQQESESRNDA----KPNSALVKRELEQLLKYKENQLRELGGRSSN 156
Query: 70 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 106
+ L ++ ++ ++ ++ GL+ L K EL LK
Sbjct: 157 GVN-LGSVREDIDSIEEQVTGLEEHLASRKEELAQLK 192
Score = 26.6 bits (59), Expect = 5.5
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 21 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL----KSELHGLKSELHG 76
L+ EL L+S+L + E K +K EL L +++L L
Sbjct: 101 LRRELAELESKLSKAQQESESRNDA----KPNSALVKRELEQLLKYKENQLRELGGRSSN 156
Query: 77 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 113
+ L ++ ++ ++ ++ GL+ L K EL LK
Sbjct: 157 GVN-LGSVREDIDSIEEQVTGLEEHLASRKEELAQLK 192
Score = 26.6 bits (59), Expect = 5.5
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 28 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL----KSELHGLKSELHG 83
L+ EL L+S+L + E K +K EL L +++L L
Sbjct: 101 LRRELAELESKLSKAQQESESRNDA----KPNSALVKRELEQLLKYKENQLRELGGRSSN 156
Query: 84 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 120
+ L ++ ++ ++ ++ GL+ L K EL LK
Sbjct: 157 GVN-LGSVREDIDSIEEQVTGLEEHLASRKEELAQLK 192
Score = 26.6 bits (59), Expect = 5.5
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 35 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL----KSELHGLKSELHG 90
L+ EL L+S+L + E K +K EL L +++L L
Sbjct: 101 LRRELAELESKLSKAQQESESRNDA----KPNSALVKRELEQLLKYKENQLRELGGRSSN 156
Query: 91 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127
+ L ++ ++ ++ ++ GL+ L K EL LK
Sbjct: 157 GVN-LGSVREDIDSIEEQVTGLEEHLASRKEELAQLK 192
Score = 26.6 bits (59), Expect = 5.5
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 42 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL----KSELHGLKSELHG 97
L+ EL L+S+L + E K +K EL L +++L L
Sbjct: 101 LRRELAELESKLSKAQQESESRNDA----KPNSALVKRELEQLLKYKENQLRELGGRSSN 156
Query: 98 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 134
+ L ++ ++ ++ ++ GL+ L K EL LK
Sbjct: 157 GVN-LGSVREDIDSIEEQVTGLEEHLASRKEELAQLK 192
Score = 26.6 bits (59), Expect = 5.5
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 49 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL----KSELHGLKSELHG 104
L+ EL L+S+L + E K +K EL L +++L L
Sbjct: 101 LRRELAELESKLSKAQQESESRNDA----KPNSALVKRELEQLLKYKENQLRELGGRSSN 156
Query: 105 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 141
+ L ++ ++ ++ ++ GL+ L K EL LK
Sbjct: 157 GVN-LGSVREDIDSIEEQVTGLEEHLASRKEELAQLK 192
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 26.4 bits (59), Expect = 5.7
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG-LKSELHGLKSELHGLK 64
K K+ L+ LK EL LK + L++++ LK ++E L EL L+ EL LK
Sbjct: 66 KLKTRLEKLKKELEELKQRIAELQAQIEKLKKGRE--ETEERTELLEELKQLEKELKKLK 123
Query: 65 SEL 67
+EL
Sbjct: 124 AEL 126
>gnl|CDD|116029 pfam07407, Seadorna_VP6, Seadornavirus VP6 protein. This family
consists of several VP6 proteins from the Banna virus
as well as a related protein VP5 from the Kadipiro
virus. Members of this family are typically of around
420 residues in length. The function of this family is
unknown.
Length = 420
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 14 LKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELHGLKSE 59
LK E EL G+ EL L+ E LK E LK+++H L+S+
Sbjct: 15 LKVEETAENHELEGVSFDELAALREENAKLKKENEALKTKIHRLESD 61
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 21 LKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELHGLKSE 66
LK E EL G+ EL L+ E LK E LK+++H L+S+
Sbjct: 15 LKVEETAENHELEGVSFDELAALREENAKLKKENEALKTKIHRLESD 61
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 28 LKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELHGLKSE 73
LK E EL G+ EL L+ E LK E LK+++H L+S+
Sbjct: 15 LKVEETAENHELEGVSFDELAALREENAKLKKENEALKTKIHRLESD 61
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 35 LKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELHGLKSE 80
LK E EL G+ EL L+ E LK E LK+++H L+S+
Sbjct: 15 LKVEETAENHELEGVSFDELAALREENAKLKKENEALKTKIHRLESD 61
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 42 LKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELHGLKSE 87
LK E EL G+ EL L+ E LK E LK+++H L+S+
Sbjct: 15 LKVEETAENHELEGVSFDELAALREENAKLKKENEALKTKIHRLESD 61
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 49 LKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELHGLKSE 94
LK E EL G+ EL L+ E LK E LK+++H L+S+
Sbjct: 15 LKVEETAENHELEGVSFDELAALREENAKLKKENEALKTKIHRLESD 61
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 56 LKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELHGLKSE 101
LK E EL G+ EL L+ E LK E LK+++H L+S+
Sbjct: 15 LKVEETAENHELEGVSFDELAALREENAKLKKENEALKTKIHRLESD 61
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 63 LKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELHGLKSE 108
LK E EL G+ EL L+ E LK E LK+++H L+S+
Sbjct: 15 LKVEETAENHELEGVSFDELAALREENAKLKKENEALKTKIHRLESD 61
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 70 LKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELHGLKSE 115
LK E EL G+ EL L+ E LK E LK+++H L+S+
Sbjct: 15 LKVEETAENHELEGVSFDELAALREENAKLKKENEALKTKIHRLESD 61
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 77 LKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELHGLKSE 122
LK E EL G+ EL L+ E LK E LK+++H L+S+
Sbjct: 15 LKVEETAENHELEGVSFDELAALREENAKLKKENEALKTKIHRLESD 61
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 84 LKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELHGLKSE 129
LK E EL G+ EL L+ E LK E LK+++H L+S+
Sbjct: 15 LKVEETAENHELEGVSFDELAALREENAKLKKENEALKTKIHRLESD 61
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 91 LKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELHGLKSE 136
LK E EL G+ EL L+ E LK E LK+++H L+S+
Sbjct: 15 LKVEETAENHELEGVSFDELAALREENAKLKKENEALKTKIHRLESD 61
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 98 LKSELHGLKSELHGLK-SELHGLKSELHGLKSELHGLKSELHGLKSE 143
LK E EL G+ EL L+ E LK E LK+++H L+S+
Sbjct: 15 LKVEETAENHELEGVSFDELAALREENAKLKKENEALKTKIHRLESD 61
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 26.8 bits (59), Expect = 6.7
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 4 KEKRKSEL--DGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
+EK E+ + L+ + L +H L EL LK E LK ++ LK+EL
Sbjct: 191 QEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAEL- 249
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95
E+ + + L+ E L + L L+S+
Sbjct: 250 ---IEVAETEERVFKLEKERSLLDASLRELESKF 280
>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5. Members of this
family of proteins are involved in maintaining Golgi
structure. They stimulate the formation of Golgi stacks
and ribbons, and are involved in intra-Golgi retrograde
transport. Two main interactions have been
characterized: one with RAB1A that has been activated by
GTP-binding and another with isoform CASP of CUTL1.
Length = 509
Score = 26.3 bits (58), Expect = 9.1
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 4/144 (2%)
Query: 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELH-GLKSE---LHGLKSELHGLKSELH 61
K E L+ L L++E K EL + + H L+S+ ++ LK +
Sbjct: 209 KHLQEEGELQQLLKLLRAEGESEKQELQQYRQKAHRILQSKEKRINFLKEGCLFEGLDSS 268
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
+ EL LK E ++ E+ L+ ++ L+SE ++E G EL +
Sbjct: 269 TAQIELEELKHESEHVQEEITKLEGQIIQLRSEAQDREAEASGEAESFRKQPRELSQQIA 328
Query: 122 ELHGLKSELHGLKSELHGLKSELG 145
K EL EL+ + +LG
Sbjct: 329 PQITTKQELELYYQELYHYREDLG 352
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.135 0.376
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,035,173
Number of extensions: 597617
Number of successful extensions: 2448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1557
Number of HSP's successfully gapped: 534
Length of query: 156
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 67
Effective length of database: 6,990,096
Effective search space: 468336432
Effective search space used: 468336432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.0 bits)