RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5576
(156 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 49.1 bits (117), Expect = 1e-07
Identities = 27/143 (18%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
R E+ + L++E ++ ++ L+ +L ++ L+ E ++ ++ ++
Sbjct: 934 ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDIL 993
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
++ + + L E L+ + L + L +E L LK++ + SEL
Sbjct: 994 IMEDQNNKLTKERKLLEERVSDLTTNL----AEEEEKAKNLTKLKNKHESMISELEVRLK 1049
Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
+ + EL +K +L G S+L
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDL 1072
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane
protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Length = 602
Score = 33.9 bits (76), Expect = 0.014
Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 1/141 (0%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL- 63
EKR E+ K+ L + E ++E S + + L ++ +
Sbjct: 49 EKRDKEITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNADAADIT 108
Query: 64 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123
+ E L++EL + L +E L ++ L+ +S + +
Sbjct: 109 RQEFRLLQAELREYGFRTEIAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQ 168
Query: 124 HGLKSELHGLKSELHGLKSEL 144
++ L +
Sbjct: 169 KDAQNADKKAADMLAEYERRK 189
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 31.1 bits (70), Expect = 0.046
Identities = 20/90 (22%), Positives = 38/90 (42%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
E+ + EL L E L EL ++ + L +++E L E + E K
Sbjct: 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFK 66
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSE 94
+ L EL +++++ + +L LK +
Sbjct: 67 RQQLELDDELKSVENQMRYAQMQLDKLKKK 96
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 31.6 bits (71), Expect = 0.065
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 3/135 (2%)
Query: 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 69
+ LK E K K + EL + L++E L+++L +
Sbjct: 4 DFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRD 60
Query: 70 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 129
L+++ LK E+ LK +L ++ + S L S+ +K +LH EL +
Sbjct: 61 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 120
Query: 130 LHGLKSELHGLKSEL 144
L K +
Sbjct: 121 LERAKRATIMSLEDF 135
Score = 30.9 bits (69), Expect = 0.10
Identities = 26/137 (18%), Positives = 49/137 (35%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
+ + L+++ LK E+ LK +L ++ + S L S+ +K +LH
Sbjct: 52 VQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV 111
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
EL +L K + ++ + L E L + LK E
Sbjct: 112 RELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEAR 171
Query: 125 GLKSELHGLKSELHGLK 141
L+ EL + + +
Sbjct: 172 DLRQELAVRERQQEVTR 188
Score = 30.9 bits (69), Expect = 0.11
Identities = 28/131 (21%), Positives = 50/131 (38%)
Query: 14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 73
L+++L + L+++ LK E+ LK +L ++ + S L S+ +K +
Sbjct: 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQ 106
Query: 74 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 133
LH EL +L K + ++ + L E L + L
Sbjct: 107 LHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRL 166
Query: 134 KSELHGLKSEL 144
K E L+ EL
Sbjct: 167 KDEARDLRQEL 177
Score = 30.9 bits (69), Expect = 0.13
Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 3/130 (2%)
Query: 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
K E K K + EL + L++E L+++L + L+++
Sbjct: 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADN 65
Query: 68 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127
LK E+ LK +L ++ + S L S+ +K +LH EL +L K
Sbjct: 66 QRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125
Query: 128 SELHGLKSEL 137
+
Sbjct: 126 RATIMSLEDF 135
Score = 28.2 bits (62), Expect = 1.1
Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 3/126 (2%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
K K + EL + L++E L+++L + L+++ LK
Sbjct: 13 AYWKELSMKYKQSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADNQRLK 69
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
E+ LK +L ++ + S L S+ +K +LH EL +L K
Sbjct: 70 YEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI 129
Query: 125 GLKSEL 130
+
Sbjct: 130 MSLEDF 135
>3lkd_A Type I restriction-modification system methyltransferase subunit;
Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics,
PSI-2; 2.25A {Streptococcus thermophilus}
Length = 542
Score = 31.9 bits (73), Expect = 0.071
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 68
L + ++++ + + + L + +LHG E EL GL+ H
Sbjct: 486 LTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEA---DEELKAFVKAFKGLEHHHH 540
Score = 31.1 bits (71), Expect = 0.12
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 18 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 75
L + ++++ + + + L + +LHG E EL GL+ H
Sbjct: 486 LTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEA---DEELKAFVKAFKGLEHHHH 540
Score = 31.1 bits (71), Expect = 0.12
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 25 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 82
L + ++++ + + + L + +LHG E EL GL+ H
Sbjct: 486 LTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEA---DEELKAFVKAFKGLEHHHH 540
Score = 31.1 bits (71), Expect = 0.12
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 32 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 89
L + ++++ + + + L + +LHG E EL GL+ H
Sbjct: 486 LTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEA---DEELKAFVKAFKGLEHHHH 540
Score = 31.1 bits (71), Expect = 0.12
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 39 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 96
L + ++++ + + + L + +LHG E EL GL+ H
Sbjct: 486 LTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEA---DEELKAFVKAFKGLEHHHH 540
Score = 31.1 bits (71), Expect = 0.12
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 46 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 103
L + ++++ + + + L + +LHG E EL GL+ H
Sbjct: 486 LTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEA---DEELKAFVKAFKGLEHHHH 540
Score = 31.1 bits (71), Expect = 0.12
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 53 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 110
L + ++++ + + + L + +LHG E EL GL+ H
Sbjct: 486 LTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEA---DEELKAFVKAFKGLEHHHH 540
Score = 31.1 bits (71), Expect = 0.12
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 60 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 117
L + ++++ + + + L + +LHG E EL GL+ H
Sbjct: 486 LTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEA---DEELKAFVKAFKGLEHHHH 540
Score = 31.1 bits (71), Expect = 0.12
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 67 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
L + ++++ + + + L + +LHG E EL GL+ H
Sbjct: 486 LTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEA---DEELKAFVKAFKGLEHHHH 540
Score = 31.1 bits (71), Expect = 0.12
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 74 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 131
L + ++++ + + + L + +LHG E EL GL+ H
Sbjct: 486 LTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEA---DEELKAFVKAFKGLEHHHH 540
Score = 31.1 bits (71), Expect = 0.12
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 138
L + ++++ + + + L + +LHG E EL GL+ H
Sbjct: 486 LTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEA---DEELKAFVKAFKGLEHHHH 540
Score = 28.8 bits (65), Expect = 0.66
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGL----KSELHGLKSELHGLKSELH 47
+ + + + ++ + L + +LHG EL GL+ H
Sbjct: 490 VAKINQTNATIESQTASLLDMLGQLHGTTPEADEELKAFVKAFKGLEHHHH 540
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 29.6 bits (67), Expect = 0.085
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 46
R ++K+++E + L E L+ + LK L E+ LK +
Sbjct: 16 RYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 15 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 53
++E L E L+ + LK L E+ LK +
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 22 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60
++E L E L+ + LK L E+ LK +
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 29 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
++E L E L+ + LK L E+ LK +
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 36 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 74
++E L E L+ + LK L E+ LK +
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 43 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 81
++E L E L+ + LK L E+ LK +
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 50 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 88
++E L E L+ + LK L E+ LK +
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 57 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95
++E L E L+ + LK L E+ LK +
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 64 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 102
++E L E L+ + LK L E+ LK +
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 71 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 109
++E L E L+ + LK L E+ LK +
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 78 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 116
++E L E L+ + LK L E+ LK +
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123
++E L E L+ + LK L E+ LK +
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 92 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130
++E L E L+ + LK L E+ LK +
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 99 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 137
++E L E L+ + LK L E+ LK +
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 106 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144
++E L E L+ + LK L E+ LK +
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein
metal transport, hydrolase; HET: NAG; 2.91A
{Streptococcus pneumoniae} SCOP: h.4.19.1
Length = 125
Score = 30.6 bits (68), Expect = 0.11
Identities = 27/131 (20%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 65
+E ++++ L++++H L+ EL + SE + + L+S+L K+
Sbjct: 3 HMDAEEVAPQAKIAELENQVHRLEQELKEIDESE----SEDYAKEGFRAPLQSKLDAKKA 58
Query: 66 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 125
+L S+L L ++ L +E+ L+ +L + + GL+ + K+EL
Sbjct: 59 KL----SKLEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEK 114
Query: 126 LKSELHGLKSE 136
+++L +E
Sbjct: 115 TEADLKKAVNE 125
Score = 30.6 bits (68), Expect = 0.11
Identities = 27/130 (20%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 73
+ +E ++++ L++++H L+ EL + SE + + L+S+L K++
Sbjct: 4 MDAEEVAPQAKIAELENQVHRLEQELKEIDESE----SEDYAKEGFRAPLQSKLDAKKAK 59
Query: 74 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 133
L S+L L ++ L +E+ L+ +L + + GL+ + K+EL
Sbjct: 60 L----SKLEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKT 115
Query: 134 KSELHGLKSE 143
+++L +E
Sbjct: 116 EADLKKAVNE 125
Score = 29.4 bits (65), Expect = 0.23
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
R E+ E+D +SE + + L+S+L K++L S+L L ++ L +E+
Sbjct: 23 HRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKL----SKLEELSDKIDELDAEIA 78
Query: 62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 108
L+ +L + + GL+ + K+EL +++L +E
Sbjct: 79 KLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKKAVNE 125
Score = 29.0 bits (64), Expect = 0.39
Identities = 26/124 (20%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 21 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 80
+ +E ++++ L++++H L+ EL + SE + + L+S+L K++
Sbjct: 4 MDAEEVAPQAKIAELENQVHRLEQELKEIDESE----SEDYAKEGFRAPLQSKLDAKKAK 59
Query: 81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140
L S+L L ++ L +E+ L+ +L + + GL+ + K+EL
Sbjct: 60 L----SKLEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKT 115
Query: 141 KSEL 144
+++L
Sbjct: 116 EADL 119
Score = 27.1 bits (59), Expect = 1.6
Identities = 13/66 (19%), Positives = 31/66 (46%)
Query: 1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60
+ + E+ ++D L +E+ L+ +L + + GL+ + K+EL +++L
Sbjct: 60 LSKLEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADL 119
Query: 61 HGLKSE 66
+E
Sbjct: 120 KKAVNE 125
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo
sapiens} SCOP: h.1.3.1
Length = 61
Score = 29.2 bits (66), Expect = 0.12
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 46
+KRK + L+ + L S L+SE+ L++E+ LK L
Sbjct: 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 15 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 53
K + L+ + L S L+SE+ L++E+ LK L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 22 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60
K + L+ + L S L+SE+ L++E+ LK L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 29 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
K + L+ + L S L+SE+ L++E+ LK L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 36 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 74
K + L+ + L S L+SE+ L++E+ LK L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 43 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 81
K + L+ + L S L+SE+ L++E+ LK L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 50 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 88
K + L+ + L S L+SE+ L++E+ LK L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 57 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95
K + L+ + L S L+SE+ L++E+ LK L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 64 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 102
K + L+ + L S L+SE+ L++E+ LK L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 71 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 109
K + L+ + L S L+SE+ L++E+ LK L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 78 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 116
K + L+ + L S L+SE+ L++E+ LK L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123
K + L+ + L S L+SE+ L++E+ LK L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 92 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130
K + L+ + L S L+SE+ L++E+ LK L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 99 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 137
K + L+ + L S L+SE+ L++E+ LK L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 106 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 144
K + L+ + L S L+SE+ L++E+ LK L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 29.8 bits (68), Expect = 0.19
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 17 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK----SELHGLKSELHGLKS 72
+L K E+ + + L++E+ +K + L++ + + L +++L L+
Sbjct: 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEE 89
Query: 73 ELHGLKSELHGLKSE 87
L K ++ L E
Sbjct: 90 ALQKAKQDMARLLRE 104
Score = 29.8 bits (68), Expect = 0.19
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 31 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK----SELHGLKSELHGLKS 86
+L K E+ + + L++E+ +K + L++ + + L +++L L+
Sbjct: 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEE 89
Query: 87 ELHGLKSELHGLKSE 101
L K ++ L E
Sbjct: 90 ALQKAKQDMARLLRE 104
Score = 29.8 bits (68), Expect = 0.19
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 73 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK----SELHGLKSELHGLKS 128
+L K E+ + + L++E+ +K + L++ + + L +++L L+
Sbjct: 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEE 89
Query: 129 ELHGLKSELHGLKSE 143
L K ++ L E
Sbjct: 90 ALQKAKQDMARLLRE 104
Score = 28.6 bits (65), Expect = 0.50
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK----SELHGLKSELHGLKS 65
+L K E+ + + L++E+ +K + L++ + + L +++L L+
Sbjct: 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEE 89
Query: 66 ELHGLKSELHGLKSE 80
L K ++ L E
Sbjct: 90 ALQKAKQDMARLLRE 104
Score = 27.9 bits (63), Expect = 0.82
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLK----SELHGLKSELHGLKSELHGL 63
K E+ + + L++E+ +K + L++ + + L +++L L+ L
Sbjct: 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKA 94
Query: 64 KSELHGLKSE 73
K ++ L E
Sbjct: 95 KQDMARLLRE 104
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 30.2 bits (69), Expect = 0.25
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
R EL L ++ L + L L+SE + L E+ LK E + ++
Sbjct: 19 ATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKRE----GKDTTEIQ 74
Query: 65 SELHGLKSELHGLKSELHGLKSELHGLKSEL 95
+ + LK E+ L+ EL ++ EL +
Sbjct: 75 NRVKELKEEIDRLEEELRKVEEELKNTLLWI 105
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 28.3 bits (64), Expect = 0.59
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 17 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK----SELHGLKSELHGLKS 72
+ KSE+ L+ + L+ EL S L++ L K +L ++ + ++
Sbjct: 32 LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEE 91
Query: 73 ELHGLKSELHGLKSE 87
+L L+ E+ E
Sbjct: 92 QLAQLRCEMEQQNQE 106
Score = 28.3 bits (64), Expect = 0.59
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 24 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK----SELHGLKSELHGLKS 79
+ KSE+ L+ + L+ EL S L++ L K +L ++ + ++
Sbjct: 32 LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEE 91
Query: 80 ELHGLKSELHGLKSE 94
+L L+ E+ E
Sbjct: 92 QLAQLRCEMEQQNQE 106
Score = 28.3 bits (64), Expect = 0.59
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 66 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK----SELHGLKSELHGLKS 121
+ KSE+ L+ + L+ EL S L++ L K +L ++ + ++
Sbjct: 32 LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEE 91
Query: 122 ELHGLKSELHGLKSE 136
+L L+ E+ E
Sbjct: 92 QLAQLRCEMEQQNQE 106
Score = 28.3 bits (64), Expect = 0.59
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 73 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK----SELHGLKSELHGLKS 128
+ KSE+ L+ + L+ EL S L++ L K +L ++ + ++
Sbjct: 32 LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEE 91
Query: 129 ELHGLKSELHGLKSE 143
+L L+ E+ E
Sbjct: 92 QLAQLRCEMEQQNQE 106
Score = 27.9 bits (63), Expect = 0.88
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK----SELHGLKSELHGLKS 65
+ KSE+ L+ + L+ EL S L++ L K +L ++ + ++
Sbjct: 32 LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEE 91
Query: 66 ELHGLKSELHGLKSE 80
+L L+ E+ E
Sbjct: 92 QLAQLRCEMEQQNQE 106
Score = 27.9 bits (63), Expect = 0.98
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 80 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK----SELHGLKSELHGLKS 135
+ KSE+ L+ + L+ EL S L++ L K +L ++ + ++
Sbjct: 32 LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEE 91
Query: 136 ELHGLKSEL 144
+L L+ E+
Sbjct: 92 QLAQLRCEM 100
Score = 26.7 bits (60), Expect = 2.1
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLK----SELHGLKSELHGLKSELHGL 63
KSE+ L+ + L+ EL S L++ L K +L ++ + ++ +L L
Sbjct: 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQL 96
Query: 64 KSELHGLKSE 73
+ E+ E
Sbjct: 97 RCEMEQQNQE 106
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex,
transcription/DNA complex; 2.20A {Homo sapiens} SCOP:
h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Length = 62
Score = 26.9 bits (60), Expect = 0.76
Identities = 8/42 (19%), Positives = 23/42 (54%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 46
+++ + L+ ++ LK++ L S + L+ ++ LK ++
Sbjct: 18 KRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 1fos_E* 1a02_F* 1s9k_D
Length = 63
Score = 26.3 bits (58), Expect = 1.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 46
+R+ D L++E L+ E L++E+ L E L+ L
Sbjct: 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 27.4 bits (60), Expect = 1.7
Identities = 22/144 (15%), Positives = 46/144 (31%), Gaps = 2/144 (1%)
Query: 5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH--G 62
+ + E D L E EL ++ + + + + + G
Sbjct: 27 QDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREG 86
Query: 63 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122
+ E+ + LKS + + L+ EL S+ + ++ LK +L L+
Sbjct: 87 NEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKI 146
Query: 123 LHGLKSELHGLKSELHGLKSELGL 146
L + + LG+
Sbjct: 147 RDQYLVWLTQKGARQKKINEWLGI 170
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 2.7
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 125 GLKSELHGLKSELHGLKSELGLN 147
G L+GL L K+ GL+
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLD 403
Score = 26.2 bits (57), Expect = 6.9
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 69 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL------HGLKSELHGLKSE 122
G L+GL L K+ +S + + +L L H S L L
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH---SHL--LVPA 435
Query: 123 LHGLKSELHGLKSELHGLKSELGLNCYLTY 152
+ +L + ++ + Y T+
Sbjct: 436 SDLINKDLVKNNVSFNA--KDIQIPVYDTF 463
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain
binding, HIP1 coiled-coil domain, endocytosis, clathrin
SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Length = 107
Score = 25.6 bits (55), Expect = 4.6
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 58
R+ +++ L+ LK EL + EL L+ L +E L+ E L S
Sbjct: 47 RKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLVS 103
Score = 25.2 bits (54), Expect = 6.8
Identities = 15/64 (23%), Positives = 23/64 (35%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
R ++ + + L LK EL + EL L+ L +E L+ E
Sbjct: 40 RISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERD 99
Query: 62 GLKS 65
L S
Sbjct: 100 SLVS 103
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA,
protein-DNA complex; HET: DNA; 3.0A {Homo sapiens}
SCOP: h.1.3.1
Length = 87
Score = 24.9 bits (54), Expect = 5.9
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 53
+ ++K K + ++ L +E L+ ++ L EL L++ L L
Sbjct: 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPL 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.135 0.376
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,023,535
Number of extensions: 101781
Number of successful extensions: 549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 185
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.5 bits)