Query psy558
Match_columns 692
No_of_seqs 306 out of 483
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 21:06:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gmj_D Protein mothers against 100.0 2.8E-82 9.7E-87 643.5 19.3 199 294-531 47-245 (245)
2 1khx_A SMAD2; TGF-beta signali 100.0 8E-77 2.7E-81 598.8 21.0 198 294-531 30-227 (227)
3 1dd1_A SMAD4; B-sheet sandwich 100.0 2.4E-73 8.3E-78 584.5 19.2 252 265-524 7-263 (268)
4 1ygs_A SMAD4; tumor suppressor 100.0 3.4E-72 1.2E-76 568.1 17.5 224 294-524 1-229 (234)
5 1ozj_A SMAD 3; MAD homology do 100.0 1.3E-62 4.5E-67 462.4 4.6 134 1-135 7-143 (144)
6 3qsv_A SMAD4, mothers against 100.0 3.4E-60 1.2E-64 441.1 3.8 125 1-126 7-132 (132)
7 3kmp_A SMAD1-MH1; protein-DNA 100.0 4E-59 1.4E-63 430.8 5.2 124 1-124 1-124 (124)
8 1ozj_A SMAD 3; MAD homology do 100.0 4.8E-30 1.6E-34 241.6 0.3 89 508-615 46-143 (144)
9 3qsv_A SMAD4, mothers against 99.9 3.9E-26 1.3E-30 212.7 0.2 78 508-586 44-131 (132)
10 3kmp_A SMAD1-MH1; protein-DNA 99.9 1.1E-25 3.8E-30 208.0 0.3 79 507-585 37-124 (124)
11 3a77_A IRF-3, interferon regul 96.7 0.0096 3.3E-07 60.9 11.5 127 296-424 16-149 (242)
12 3dsh_A IRF-5, interferon regul 96.4 0.012 4.1E-07 60.3 9.9 73 348-424 81-153 (246)
13 2o6n_A RH4B designed peptide; 40.5 25 0.00085 25.0 3.2 26 19-46 4-29 (35)
14 4b4t_W RPN10, 26S proteasome r 27.9 50 0.0017 33.9 4.5 39 23-61 122-176 (268)
15 2rnn_A E3 SUMO-protein ligase 24.2 85 0.0029 28.6 4.7 43 7-50 69-114 (114)
16 1wy6_A Hypothetical protein ST 21.9 37 0.0013 32.5 1.9 40 11-52 83-122 (172)
17 3mko_A Glycoprotein C; trimeri 21.4 73 0.0025 29.4 3.7 27 20-49 22-48 (137)
18 1rss_A Ribosomal protein S7; R 20.3 1.1E+02 0.0038 28.9 5.0 49 1-51 13-65 (151)
19 1hus_A Ribosomal protein S7; R 20.2 1.1E+02 0.0039 29.0 5.0 49 1-51 17-69 (155)
No 1
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster}
Probab=100.00 E-value=2.8e-82 Score=643.53 Aligned_cols=199 Identities=90% Similarity=1.457 Sum_probs=195.0
Q ss_pred CCCccEEEEEEeecceecceeeeecCeEEEcCCCCCCCCCCeeeecCCcCCCCChhHHHHHhccCCcEEEEEEcCeEEEE
Q psy558 294 EQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAE 373 (692)
Q Consensus 294 ~~~~WCsIaYyEl~~rVGe~F~v~~~sV~VDGf~dps~~~~RfcLg~lsNv~R~~~~e~~R~~IGkGV~L~~~~G~Vwl~ 373 (692)
++++||+|+|||+|+||||+|+|++++|+||||+||+.+++|||||+|+|++|++++++||+|||+||+|++++|+||++
T Consensus 47 ep~~WcsIaYyEln~RVGe~F~a~~~sv~IDGf~dps~~~~RfcLg~lsNv~R~~~ve~tR~~IG~GV~L~~~~G~V~~~ 126 (245)
T 3gmj_D 47 EPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAE 126 (245)
T ss_dssp CCSCSEEEEEEETTEEEEEEEEECSSEEEEESSCCCCTTTSEEEGGGCCCTTCCHHHHHHHHHHTTCEEEEEETTEEEEE
T ss_pred CCCceeEEEEeecCceeccceeecCCeEEEeCCcCCCCCCCceeecCccCCCCcHHHHHHHHHHhcCeEEEEECCEEEEE
Confidence 89999999999999999999999999999999999954459999999999999999999999999999999999999999
Q ss_pred ecCCCeeEecCCCCCCCCCCCCCceeecCCCCeEEEeeHHHHHHHHHHHhhcCchhhhhhccccccCcccccccCCCCCC
Q psy558 374 CLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTE 453 (692)
Q Consensus 374 nlS~~pVFVqS~~ld~~~g~~~~~V~KI~pg~slKVFD~~~fa~~L~~~~~~~~~~v~~l~~~c~i~p~~~~~~~~~~~~ 453 (692)
|+|+++|||||++||+++|+++++||||+||+++||||+++|+++|++++++++++||+|++||+|
T Consensus 127 nlS~~~IFVqS~~~n~~~g~~~~tV~KI~pg~slKiFd~~~fa~~L~qs~~~g~~~v~~L~~~Cti-------------- 192 (245)
T 3gmj_D 127 CLSDSAIFVQSRNCNYQHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMCTI-------------- 192 (245)
T ss_dssp ECSSSCEEEEEHHHHHHTTCCTTCCEEECTTCEEEEECHHHHHHHHHHTTTTCSHHHHHHGGGGEE--------------
T ss_pred ecCCCcEEECCCcccccCCCCccceEEeCCCCeEEEeCHHHHHHHHHHHhhcCCchhhhhhhccee--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccccchhhhheeeeEEEeeEEEeecCCCcccccccccCceeEEEeccChhHHHHHHHhhcCCCCCCCcccc
Q psy558 454 IPFAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVS 531 (692)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~i~RISFvKGWG~~Y~Rq~ItstPCWIEI~L~~~Le~LD~VLsqmg~p~k~issVs 531 (692)
|||||||||++|+||+||+|||||||+||+||+|||+||+|||+|+++|+|||
T Consensus 193 -------------------------RiSFvKGWG~~Y~Rq~ItstPCWiEI~L~~pLq~LD~vL~qmg~p~~~~ss~s 245 (245)
T 3gmj_D 193 -------------------------RMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNAISSVS 245 (245)
T ss_dssp -------------------------EEEESSCCSTTSSCCSGGGSSSEEEEEEHHHHHHHHHHHTSSCCCSSCCCSCC
T ss_pred -------------------------eeEeecCcCcccccCCcccCCEEEEEEcChHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999986
No 2
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A
Probab=100.00 E-value=8e-77 Score=598.79 Aligned_cols=198 Identities=76% Similarity=1.306 Sum_probs=194.9
Q ss_pred CCCccEEEEEEeecceecceeeeecCeEEEcCCCCCCCCCCeeeecCCcCCCCChhHHHHHhccCCcEEEEEEcCeEEEE
Q psy558 294 EQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAE 373 (692)
Q Consensus 294 ~~~~WCsIaYyEl~~rVGe~F~v~~~sV~VDGf~dps~~~~RfcLg~lsNv~R~~~~e~~R~~IGkGV~L~~~~G~Vwl~ 373 (692)
++++||+|+|||+|+||||+|+|+.++|+||||+|| ++++|||||+|+|++|+++++++|+|||+||+|++++|+|||+
T Consensus 30 ~~~~WcsIaYyE~n~rVGe~f~~~~~~v~IDGf~dp-s~~~rfcLg~lsN~~R~~~v~~~R~~IG~GV~L~~~~G~V~~~ 108 (227)
T 1khx_A 30 EPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDP-SNSERFCLGLLSNVNRNATVEMTRRHIGRGVRLYYIGGEVFAE 108 (227)
T ss_dssp CCSCSEEEEEEETTEECSCCEEECSSEEEEESSCCS-SCTTEEEGGGCCCTTCCHHHHHHHTTTTTCEEEEEETTEEEEE
T ss_pred CCCceEEEEEEecCceeCCeEEecCCEEEEeCccCC-CCCCeeecccccCCCCcHHHHHHHHhhcCceEEEEECCEEEEE
Confidence 889999999999999999999999999999999999 6899999999999999999999999999999999999999999
Q ss_pred ecCCCeeEecCCCCCCCCCCCCCceeecCCCCeEEEeeHHHHHHHHHHHhhcCchhhhhhccccccCcccccccCCCCCC
Q psy558 374 CLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTE 453 (692)
Q Consensus 374 nlS~~pVFVqS~~ld~~~g~~~~~V~KI~pg~slKVFD~~~fa~~L~~~~~~~~~~v~~l~~~c~i~p~~~~~~~~~~~~ 453 (692)
|+|++||||||++||+++|+++++||||+||+++||||+++|+++|+++++.+++++|+|++||+|
T Consensus 109 nlS~~~IFVqS~~~n~~~~~~~~tV~Ki~pg~~lKvFd~~~fa~~L~~~~~~~~~~v~~L~~~C~i-------------- 174 (227)
T 1khx_A 109 CLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTI-------------- 174 (227)
T ss_dssp ECSSSCEEEECHHHHHHTTCCTTCCEEECTTCEEEEEEHHHHHHHHHHHGGGCHHHHHGGGGGGEE--------------
T ss_pred EcCCCCEEEeCCCcccccCCCcCceEEeCCCCeEEEeCHHHHHHHHHHHhccCCCchhhhhhceEE--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccccchhhhheeeeEEEeeEEEeecCCCcccccccccCceeEEEeccChhHHHHHHHhhcCCCCCCCcccc
Q psy558 454 IPFAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVS 531 (692)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~i~RISFvKGWG~~Y~Rq~ItstPCWIEI~L~~~Le~LD~VLsqmg~p~k~issVs 531 (692)
|||||||||++|+||+||+|||||||+||+||||||+||++|++|+++|+||+
T Consensus 175 -------------------------RISFvKGWG~~Y~Rq~It~tPCWiEI~l~~pL~~ld~vl~~m~~p~~~~~s~~ 227 (227)
T 1khx_A 175 -------------------------RMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSPSVRCSSMS 227 (227)
T ss_dssp -------------------------EEEESCCCSSSSSCCSGGGSSSEEEEEEHHHHHHHHHHHTTSCCCSSCCCSCC
T ss_pred -------------------------EEEEEcCCCCCCCCCCCCcCCeEEEEECCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999986
No 3
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Probab=100.00 E-value=2.4e-73 Score=584.50 Aligned_cols=252 Identities=38% Similarity=0.619 Sum_probs=184.3
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEEEeecceecceeee--ecCeEEEcCCCCCCCCCCeeeecCCc
Q psy558 265 MPKMNPNFEEYPTTHIIKMNLYSSFSPPQEQPFWASIAYYELNSRVGEVFHC--QSHSVIVDGFTNPSNNLNRFCLGQLS 342 (692)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WCsIaYyEl~~rVGe~F~v--~~~sV~VDGf~dps~~~~RfcLg~ls 342 (692)
+|+++.....|+..+ .+.+....+.+++++++||+|+|||+|+||||+|++ +.++|+||||+|| ++++|||||+|+
T Consensus 7 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~WCsIaYyEln~rVGe~f~~~~~~~~v~VDGf~dp-s~~~RfCLg~ls 84 (268)
T 1dd1_A 7 HPPMPPHPGHYWPVH-NELAFQPPISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDP-SGGDRFCLGQLS 84 (268)
T ss_dssp ECCCCC---------------CCCSCCSCCCSEEEEEEEEETTEECSCCEEEETTCSEEEEESCCCC-CCTTEEECSSCC
T ss_pred CCCCCCCCCcccccc-cccccCCccccCCCCCceEEEEEEecCceecceEEecCCCCEEEEecCCCC-CCCCeeeccccc
Confidence 344443333344333 344555678889999999999999999999999999 7899999999999 689999999999
Q ss_pred CCCCChhHHHHHhccCCcEEEEEEc-CeEEEEecCCCeeEecCCCCCCCCCCCCC-ceeecCCCCeEEEeeHHHHHHHHH
Q psy558 343 NVNRNSTIENTRRHIGKGVHLYYVG-GEVYAECLSDSAIFVQSRNCNHHHGFHQS-TVCKIPAGCSLKIFNNQEFAELLS 420 (692)
Q Consensus 343 Nv~R~~~~e~~R~~IGkGV~L~~~~-G~Vwl~nlS~~pVFVqS~~ld~~~g~~~~-~V~KI~pg~slKVFD~~~fa~~L~ 420 (692)
|++|+++++++|+|||+||+|++++ |+|||+|+|++||||||++||+++|++++ +||||+||+++||||+++|++.|+
T Consensus 85 N~~R~~~ve~~R~~IG~GV~L~~~~~G~Vwl~nlS~~~IFVqS~~ln~~~g~~p~~tV~KI~pg~~lKVFD~~~f~~~l~ 164 (268)
T 1dd1_A 85 NVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQ 164 (268)
T ss_dssp CTTCCHHHHHHHTTTTTCEEEEEETTTEEEEEECSSSCEEEECHHHHHHHTCCTTCCEEEECTTCEEEEECHHHHHHHHH
T ss_pred CCCccHHHHHHHHhhcCceEEEEecCCcEEEEecCCCCEEEcCCCccccccCCCCCcEEEeCCCCeEEEeccHHHHHHHH
Confidence 9999999999999999999999997 99999999999999999999999999986 999999999999999999987776
Q ss_pred HHhhc-CchhhhhhccccccCcccccccCCCCCCcccccccccccchhhhheeeeEEEeeEEEeecCCCcccccccccCc
Q psy558 421 QSVNH-GFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTP 499 (692)
Q Consensus 421 ~~~~~-~~~~v~~l~~~c~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~RISFvKGWG~~Y~Rq~ItstP 499 (692)
+.... ..+++.+.+.+... +++....++..+++++.+--.. +...|+++|+||||||||||++|+||+||+||
T Consensus 165 ~~~~~~q~a~~~q~a~~~g~-----~~~~~~~~g~~p~~~~~~~a~~-~v~~L~~~C~iRISFVKGWG~~Y~Rq~ItstP 238 (268)
T 1dd1_A 165 QQAATAQAAAAAQAAAVAGN-----IPGPGSVGGIAPAISLSAAAGI-GVDDLRRLCILRMSFVKGWGPDYPRQSIKETP 238 (268)
T ss_dssp HHHHHHTTTTCC-------------------------------CCSC-CHHHHHGGGEEEEEESCCCSTTSSCCSGGGSS
T ss_pred HHHHhhhhhhhhhhhhhccc-----cCCccccccccccccccccccc-chhhhhhceeEEEEEEcCCCCCCCCCCCCcCC
Confidence 54321 11111121111111 0000001111111110000000 01236778888999999999999999999999
Q ss_pred eeEEEeccChhHHHHHHHhhcCCCC
Q psy558 500 CWIEIHLHGPLQWLDKVLIQMGSPH 524 (692)
Q Consensus 500 CWIEI~L~~~Le~LD~VLsqmg~p~ 524 (692)
|||||+||+||||||+||++||.+.
T Consensus 239 CWIEI~L~~pLq~LD~vl~~m~~~~ 263 (268)
T 1dd1_A 239 CWIEIHLHRALQLLDEVLHTMPIAD 263 (268)
T ss_dssp SEEEEEEHHHHHHHHHHHHHSCC--
T ss_pred eEEEEEcCHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999998864
No 4
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B*
Probab=100.00 E-value=3.4e-72 Score=568.12 Aligned_cols=224 Identities=40% Similarity=0.658 Sum_probs=172.1
Q ss_pred CCCccEEEEEEeecceecceeee--ecCeEEEcCCCCCCCCCCeeeecCCcCCCCChhHHHHHhccCCcEEEEEEc-CeE
Q psy558 294 EQPFWASIAYYELNSRVGEVFHC--QSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVG-GEV 370 (692)
Q Consensus 294 ~~~~WCsIaYyEl~~rVGe~F~v--~~~sV~VDGf~dps~~~~RfcLg~lsNv~R~~~~e~~R~~IGkGV~L~~~~-G~V 370 (692)
+|++||+|+|||+++||||+|++ +.++|+||||+|| ++++|||||+|+|++|+++++++|+|||+||+|++++ |+|
T Consensus 1 ~p~~WcsIaYyEl~~rVGe~f~~~~~~~~v~IDG~~dp-s~~~rfcLg~lsN~~R~~~~e~~R~~IG~GV~L~~~~~G~V 79 (234)
T 1ygs_A 1 APEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDP-SGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDV 79 (234)
T ss_dssp CCSEEEEEEEEETTEEEEEEEEEETTCSEEEEESSCCT-TCSSEEECTTCCCTTCCHHHHHHHTTTTTCEEEEEETTTEE
T ss_pred CCCcceEEEEEecCceecceEEecCCCCEEEEecCcCC-CCCCeeecccccCCCCcHHHHHHHHhhcCceEEEEecCCcE
Confidence 36899999999999999999999 7899999999999 6899999999999999999999999999999999997 999
Q ss_pred EEEecCCCeeEecCCCCCCCCCCCCC-ceeecCCCCeEEEeeHHHHHHHHHHHhhc-CchhhhhhccccccCcccccccC
Q psy558 371 YAECLSDSAIFVQSRNCNHHHGFHQS-TVCKIPAGCSLKIFNNQEFAELLSQSVNH-GFEAVYELTKMCTISPIFCIRNK 448 (692)
Q Consensus 371 wl~nlS~~pVFVqS~~ld~~~g~~~~-~V~KI~pg~slKVFD~~~fa~~L~~~~~~-~~~~v~~l~~~c~i~p~~~~~~~ 448 (692)
||+|+|++||||||++||+++|++++ +||||+||+++||||+++|+++|++.... ..+++.+.+..... +++.
T Consensus 80 w~~n~S~~~IFVqS~~ln~~~~~~p~~~V~Ki~pg~~lKvFd~~~f~~~l~~~~~~~q~~~~~~~a~~~g~-----~~~~ 154 (234)
T 1ygs_A 80 WVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGN-----IPGP 154 (234)
T ss_dssp EEEECSSSCEEEECHHHHHTTTCCTTCCCEEECTTCEEEEECHHHHHHHHHHHHHHHTC---------------------
T ss_pred EEEecCCCCEEEcCCCccccccCCCCCcEEEeCCCCeEEEeCcHHHHHHHHHHhhhhhhhhhhhhhhhccc-----cccc
Confidence 99999999999999999999999986 99999999999999999999999874322 11222222111110 0000
Q ss_pred CCCCCcccccccccccchhhhheeeeEEEeeEEEeecCCCcccccccccCceeEEEeccChhHHHHHHHhhcCCCC
Q psy558 449 CNRTEIPFAVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPH 524 (692)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~RISFvKGWG~~Y~Rq~ItstPCWIEI~L~~~Le~LD~VLsqmg~p~ 524 (692)
...++.++++++.+--.. ....|+++|+||||||||||++|+||+||+|||||||+||+||||||+||++||.+.
T Consensus 155 ~~~~g~~p~~~~~~~a~~-~v~~L~~~c~iRISFvKGWG~~Y~Rq~It~tPCWiEI~l~~~l~~ld~vl~~m~~~~ 229 (234)
T 1ygs_A 155 GSVGGIAPAISLSAAAGI-GVDDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIAD 229 (234)
T ss_dssp --------------------CHHHHHTTEEEEESSCCCSTTSSCSSGGGSSSEEEEEEHHHHHHHHHHHHTC----
T ss_pred ccccCccccccccccccc-chhhhhhceEEEEEEEcCCCCCCCCCCCCCCCeEEEEEcCHHHHHHHHHHHhCCCCC
Confidence 000111111100000000 011356678889999999999999999999999999999999999999999998875
No 5
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=100.00 E-value=1.3e-62 Score=462.39 Aligned_cols=134 Identities=70% Similarity=1.355 Sum_probs=119.7
Q ss_pred CCchhHHHHhhcccC---ChhhHHHHHHHHHHHHHHhhccCcHHHHHHHhcCCCCCCCcEEecccCCCccccccccCCCe
Q psy558 1 FTSPAVKKLLGWKQG---DEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPGQPSKCVTIPRSLDGRLQVSHRKGLPH 77 (692)
Q Consensus 1 ~~~~iV~~Ll~~rQG---~EeE~fakkAIeSLVKKLKekk~eLesLi~AItt~g~pSkCVTIpRtLDGRLQVagRKg~PH 77 (692)
|++||||+||||||| ||||+|+||||+|||||||| +++||+|++||+++|.+|+||||||+|||||||+||||+||
T Consensus 7 ~~~~~v~~ll~~~~~~~~~~~e~~~~kai~sLvKkLK~-~~~Le~L~~AV~s~g~~t~CV~iprsldgRlqv~~rk~~PH 85 (144)
T 1ozj_A 7 FTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKK-TGQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHRKGLPH 85 (144)
T ss_dssp CCCHHHHHHHTSCCCSCCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHCCTTSCCCEEECCTTSCEEETTEEECHH
T ss_pred CCcHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHhcc-cccHHHHHHHHhCCCCCCCeEEcccCCCccccccCccCCCe
Confidence 789999999999955 49999999999999999999 68999999999999878999999999999999999999999
Q ss_pred EEEEeeecCCCCCCCCCcccCCCCCCCCCCCCCcEEeCCCccccccCCCCCCcccCCC
Q psy558 78 VIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPVLPPIVVPRH 135 (692)
Q Consensus 78 VIYcRLWRWPDLh~~nELK~l~~Cq~afdlK~d~VCiNPYHYeRV~sP~ipp~lv~~~ 135 (692)
|||||||||||||+++|||++++|+|||++|.++||||||||+||++|++||+|||++
T Consensus 86 Vi~cRlwRWPDL~~~~ELk~l~~C~~~~~~~~~~VC~NPYHY~Rv~~p~~pPvlvp~~ 143 (144)
T 1ozj_A 86 VIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHYQRVETPVLPPVLVPRH 143 (144)
T ss_dssp HHHHHHHTCTTCCSGGGEEECTTCTTCGGGCCSEEECCGGGEEECCC-----------
T ss_pred eEEEEeeeCccCCCHhhccccccCCCchhcCCCeEEeCcchhhhhccCCCCCccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999973
No 6
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus}
Probab=100.00 E-value=3.4e-60 Score=441.13 Aligned_cols=125 Identities=54% Similarity=0.982 Sum_probs=120.2
Q ss_pred CCchhHHHHhhcccCChhhHHHHHHHHHHHHHHhhccCcHHHHHHHhcCCC-CCCCcEEecccCCCccccccccCCCeEE
Q psy558 1 FTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPG-QPSKCVTIPRSLDGRLQVSHRKGLPHVI 79 (692)
Q Consensus 1 ~~~~iV~~Ll~~rQG~EeE~fakkAIeSLVKKLKekk~eLesLi~AItt~g-~pSkCVTIpRtLDGRLQVagRKg~PHVI 79 (692)
|++||||+|||||||+|||+|+||||+|||||||||+++||+|++||+++| .+|+||||||+|||||||++|||+||||
T Consensus 7 ~~~~~v~~Ll~~k~g~e~ek~~~ka~~sLvKkLK~k~~~Le~L~~Av~s~g~~~s~CV~ipr~ldgrlqv~~rk~~PHvi 86 (132)
T 3qsv_A 7 ACLSIVHSLMCHRQGGESETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVI 86 (132)
T ss_dssp CHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTTSSCCCCCEEECCTTSCEEETTEEECHHHH
T ss_pred CcchhhhhhhccccCchhHHHHHHHHHHHHHHHhcccchHHHHHHHHhCCCCCCCCeEEeeccccccccccccccCccee
Confidence 678999999999999999999999999999999997789999999999987 8999999999999999999999999999
Q ss_pred EEeeecCCCCCCCCCcccCCCCCCCCCCCCCcEEeCCCccccccCCC
Q psy558 80 YCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVESPV 126 (692)
Q Consensus 80 YcRLWRWPDLh~~nELK~l~~Cq~afdlK~d~VCiNPYHYeRV~sP~ 126 (692)
|||||||||||+ +|||++++|+|+|++|.++||||||||+||++|+
T Consensus 87 ~cRlwRWPdL~s-~ELk~l~~C~~~~~~~~~~VC~NPyHY~Rv~~p~ 132 (132)
T 3qsv_A 87 YARLWRWPDLHK-NELKHVKYCQYAFDLKCDSVCVNPYHYERVVSPG 132 (132)
T ss_dssp HHHHHTCTTCCT-TCEEECTTCTTCGGGCCSEEECCGGGEEECCC--
T ss_pred EEEEecCCccCH-hhcccCCCCCCCccCCCCeEEeCCcCcccccCCC
Confidence 999999999987 9999999999999999999999999999999985
No 7
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1
Probab=100.00 E-value=4e-59 Score=430.84 Aligned_cols=124 Identities=90% Similarity=1.547 Sum_probs=121.9
Q ss_pred CCchhHHHHhhcccCChhhHHHHHHHHHHHHHHhhccCcHHHHHHHhcCCCCCCCcEEecccCCCccccccccCCCeEEE
Q psy558 1 FTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIY 80 (692)
Q Consensus 1 ~~~~iV~~Ll~~rQG~EeE~fakkAIeSLVKKLKekk~eLesLi~AItt~g~pSkCVTIpRtLDGRLQVagRKg~PHVIY 80 (692)
||+||||+|||||||+|||+||+|||+|||||||||+++||+|++||+++|.+|+||||||+|||||||+||||+|||||
T Consensus 1 ~~~~~v~~ll~~~~~~~~~~~~~kav~sL~KklK~~~~~Le~L~~Av~~~~~~s~CV~ipr~ldgrlqv~~~k~~Phvi~ 80 (124)
T 3kmp_A 1 FTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQPSNCVTIPRSLDGRLQVSHRKGLPHVIY 80 (124)
T ss_dssp CCCHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHCTTSCCCCCEEECCSSSCEEETTEEECHHHHH
T ss_pred CCchhhhHHhhhhcCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHhCCCCCCCeEEeccccccccccCCcccCceeeE
Confidence 89999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred EeeecCCCCCCCCCcccCCCCCCCCCCCCCcEEeCCCccccccC
Q psy558 81 CRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPYHYKRVES 124 (692)
Q Consensus 81 cRLWRWPDLh~~nELK~l~~Cq~afdlK~d~VCiNPYHYeRV~s 124 (692)
|||||||||++++|||++++|+|+|+++.+.||||||||+||++
T Consensus 81 crl~RWpdL~~~~eLk~l~~C~~~~~~~~~~VC~NPyHY~Rve~ 124 (124)
T 3kmp_A 81 CRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPYHYKRVES 124 (124)
T ss_dssp HHHHTCTTCCCGGGEEECTTCSSCGGGCCSEEECCGGGEEECCC
T ss_pred EEeecCCcCCCHHHcccCCCCCCCccCCCCeEEeCCccchhhcC
Confidence 99999999999999999999999999999999999999999985
No 8
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=99.95 E-value=4.8e-30 Score=241.58 Aligned_cols=89 Identities=61% Similarity=1.254 Sum_probs=75.2
Q ss_pred ChhHHHHHHHhhcCCCCCCCc---------ccccCCCCceEEEeeeecCCCCCCCCCcccCCcccCCCCCCCCcEEeCCc
Q psy558 508 GPLQWLDKVLIQMGSPHQPIS---------SVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPY 578 (692)
Q Consensus 508 ~~Le~LD~VLsqmg~p~k~is---------sVs~rkg~phvi~crl~RWpdL~~~~ELk~l~~C~~~~~~~~~~vC~NPy 578 (692)
+.||.|.++++.-|.+++||. +|++|||+|||||||||||||||+++|||+|++|+|+|+.+.++||||||
T Consensus 46 ~~Le~L~~AV~s~g~~t~CV~iprsldgRlqv~~rk~~PHVi~cRlwRWPDL~~~~ELk~l~~C~~~~~~~~~~VC~NPY 125 (144)
T 1ozj_A 46 GQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPY 125 (144)
T ss_dssp TCHHHHHHHHHHCCTTSCCCEEECCTTSCEEETTEEECHHHHHHHHHTCTTCCSGGGEEECTTCTTCGGGCCSEEECCGG
T ss_pred ccHHHHHHHHhCCCCCCCeEEcccCCCccccccCccCCCeeEEEEeeeCccCCCHhhccccccCCCchhcCCCeEEeCcc
Confidence 799999999999999999983 78999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcccccccccccccccccCCCCceeccCC
Q psy558 579 HYKRVESPVTLFDILTHLKIYSFYFLPVLPPIVVPRH 615 (692)
Q Consensus 579 Hy~rv~~p~~~~~~~~~~~~~~~~~~p~~~p~lvp~~ 615 (692)
||+||+.| ++||+||||+
T Consensus 126 HY~Rv~~p-------------------~~pPvlvp~~ 143 (144)
T 1ozj_A 126 HYQRVETP-------------------VLPPVLVPRH 143 (144)
T ss_dssp GEEECCC------------------------------
T ss_pred hhhhhccC-------------------CCCCccCCCC
Confidence 99999997 8999999984
No 9
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus}
Probab=99.91 E-value=3.9e-26 Score=212.65 Aligned_cols=78 Identities=49% Similarity=0.992 Sum_probs=72.4
Q ss_pred ChhHHHHHHHhhcC-CCCCCCc---------ccccCCCCceEEEeeeecCCCCCCCCCcccCCcccCCCCCCCCcEEeCC
Q psy558 508 GPLQWLDKVLIQMG-SPHQPIS---------SVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINP 577 (692)
Q Consensus 508 ~~Le~LD~VLsqmg-~p~k~is---------sVs~rkg~phvi~crl~RWpdL~~~~ELk~l~~C~~~~~~~~~~vC~NP 577 (692)
+.||.|+++++..| .+++||. +|+++||+||||||||||||||++ +|||+|++|+++|+.++++|||||
T Consensus 44 ~~Le~L~~Av~s~g~~~s~CV~ipr~ldgrlqv~~rk~~PHvi~cRlwRWPdL~s-~ELk~l~~C~~~~~~~~~~VC~NP 122 (132)
T 3qsv_A 44 DELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHK-NELKHVKYCQYAFDLKCDSVCVNP 122 (132)
T ss_dssp HHHHHHHHHHHTTTSSCCCCCEEECCTTSCEEETTEEECHHHHHHHHHTCTTCCT-TCEEECTTCTTCGGGCCSEEECCG
T ss_pred chHHHHHHHHhCCCCCCCCeEEeeccccccccccccccCcceeEEEEecCCccCH-hhcccCCCCCCCccCCCCeEEeCC
Confidence 47999999999998 5899984 789999999999999999999976 999999999999999999999999
Q ss_pred ccccccccC
Q psy558 578 YHYKRVESP 586 (692)
Q Consensus 578 yHy~rv~~p 586 (692)
|||+||+.|
T Consensus 123 yHY~Rv~~p 131 (132)
T 3qsv_A 123 YHYERVVSP 131 (132)
T ss_dssp GGEEECCC-
T ss_pred cCcccccCC
Confidence 999999987
No 10
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1
Probab=99.90 E-value=1.1e-25 Score=208.02 Aligned_cols=79 Identities=72% Similarity=1.341 Sum_probs=75.1
Q ss_pred cChhHHHHHHHhhcCCCCCCCc---------ccccCCCCceEEEeeeecCCCCCCCCCcccCCcccCCCCCCCCcEEeCC
Q psy558 507 HGPLQWLDKVLIQMGSPHQPIS---------SVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINP 577 (692)
Q Consensus 507 ~~~Le~LD~VLsqmg~p~k~is---------sVs~rkg~phvi~crl~RWpdL~~~~ELk~l~~C~~~~~~~~~~vC~NP 577 (692)
++.||.|++++++.|.+++||. +|++++|+|||||||||||||||+++|||++++|+++|+++.+.|||||
T Consensus 37 ~~~Le~L~~Av~~~~~~s~CV~ipr~ldgrlqv~~~k~~Phvi~crl~RWpdL~~~~eLk~l~~C~~~~~~~~~~VC~NP 116 (124)
T 3kmp_A 37 KGAMEELEKALSCPGQPSNCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINP 116 (124)
T ss_dssp TTHHHHHHHHHHCTTSCCCCCEEECCSSSCEEETTEEECHHHHHHHHHTCTTCCCGGGEEECTTCSSCGGGCCSEEECCG
T ss_pred cchHHHHHHHHhCCCCCCCeEEeccccccccccCCcccCceeeEEEeecCCcCCCHHHcccCCCCCCCccCCCCeEEeCC
Confidence 4899999999999999999994 7899999999999999999999999999999999999999999999999
Q ss_pred cccccccc
Q psy558 578 YHYKRVES 585 (692)
Q Consensus 578 yHy~rv~~ 585 (692)
|||+|||.
T Consensus 117 yHY~Rve~ 124 (124)
T 3kmp_A 117 YHYKRVES 124 (124)
T ss_dssp GGEEECCC
T ss_pred ccchhhcC
Confidence 99999984
No 11
>3a77_A IRF-3, interferon regulatory factor 3; phosphorylated protein, activator, antiviral defense, DNA-BI HOST-virus interaction, nucleus, phosphoprotein; HET: SEP; 1.80A {Homo sapiens} PDB: 1j2f_A 1qwt_A 1zoq_A
Probab=96.69 E-value=0.0096 Score=60.90 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=79.3
Q ss_pred CccEEEEEEeecceecceeeeecCe-EEEcCC-CC-CCCCCCeeeecCCcC--CCC--ChhHHHHHhccCCcEEEEEEcC
Q psy558 296 PFWASIAYYELNSRVGEVFHCQSHS-VIVDGF-TN-PSNNLNRFCLGQLSN--VNR--NSTIENTRRHIGKGVHLYYVGG 368 (692)
Q Consensus 296 ~~WCsIaYyEl~~rVGe~F~v~~~s-V~VDGf-~d-ps~~~~RfcLg~lsN--v~R--~~~~e~~R~~IGkGV~L~~~~G 368 (692)
..+-.|..|=....|+++ .|.++. +.|=+. .+ +.......+|=.-.. .+. ...++++-.++++||.|...++
T Consensus 16 ~~~l~Vtv~YrG~~V~~~-~v~~p~GcRl~~~~~~~~~~~~e~V~lP~p~~~l~~~~q~~~t~~LL~~l~rGllL~~~~~ 94 (242)
T 3a77_A 16 EWEFEVTAFYRGRQVFQQ-TISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQ 94 (242)
T ss_dssp CBEEEEEEEETTEEEEEE-EEECTTCEEEC-------CCSSEEECCCCGGGTCCCHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred ccEEEEEEEECCEEEEEE-EEcCCCeEEEecCCCCCCCCCCceeECCCCccccccHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 455677777778888886 566553 333111 00 000111111111000 011 2358888899999999999999
Q ss_pred eEEEEecCCCeeEecCCCCCCCCCCCCCceeecCCCCeEEEeeHHHHHHHHHHHhh
Q psy558 369 EVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVN 424 (692)
Q Consensus 369 ~Vwl~nlS~~pVFVqS~~ld~~~g~~~~~V~KI~pg~slKVFD~~~fa~~L~~~~~ 424 (692)
++|++.+....||...........-+ ..=.||.-+...||||+++|-+.|.+-.+
T Consensus 95 giya~Rlcq~rVfW~~~~~~~p~~~~-~~P~kLeR~~~~klFd~~~Fl~eL~~f~~ 149 (242)
T 3a77_A 95 WLWAQRLGHCHTYWAVSEELLPNSGH-GPDGEVPKDKEGGVFDLGPFIVDLITFTE 149 (242)
T ss_dssp EEEEEECSSSCEEEEEECSSCCCCTT-CCSEECCSSSCEEEEEHHHHHHHHHHHHT
T ss_pred cEEEEEcCCccEEEecCCCCCCCCCC-CCCcccCCCCceeecCHHHHHHHHHHHHc
Confidence 99999999999999863311111111 12379999999999999999888865443
No 12
>3dsh_A IRF-5, interferon regulatory factor 5; phosphoactivation induced dimerization, DNA-binding, nucleus transcription, transcription regulation; 2.00A {Homo sapiens}
Probab=96.38 E-value=0.012 Score=60.30 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=59.5
Q ss_pred hhHHHHHhccCCcEEEEEEcCeEEEEecCCCeeEecCCCCCCCCCCCCCceeecCCCCeEEEeeHHHHHHHHHHHhh
Q psy558 348 STIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVN 424 (692)
Q Consensus 348 ~~~e~~R~~IGkGV~L~~~~G~Vwl~nlS~~pVFVqS~~ld~~~g~~~~~V~KI~pg~slKVFD~~~fa~~L~~~~~ 424 (692)
..++++..++++||.|...+++||+..+....||...+.....+ ..-.||.-+...||||++.|-+.|++-.+
T Consensus 81 ~~t~~LL~~lerGllL~~~~~glyakRlcq~rVfW~gp~~~~~~----~~P~kLeR~~~~kLFd~~~F~~eL~~f~~ 153 (246)
T 3dsh_A 81 FYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHD----SCPNPIQREVKTKLFSLEHFLNELILFQK 153 (246)
T ss_dssp HHHHHHHTTCSSCEEEEEETTEEEEEECSSSCEEEESTTSCCSC----SSCCBCCBTCCEEEEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCceEEEEcCCeEEEEecCCCCeEeeCCCCCCCC----CCccccccCCceeecCHHHHHHHHHHHhc
Confidence 36888999999999999999999999999999999765443221 12468888999999999999888865433
No 13
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=40.49 E-value=25 Score=24.97 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHhhccCcHHHHHHH
Q psy558 19 EKWAEKAVDSLVKKLKKSKGDIEELERA 46 (692)
Q Consensus 19 E~fakkAIeSLVKKLKekk~eLesLi~A 46 (692)
-+-|+|-|--|+||.|| +-||++-+|
T Consensus 4 ieqakkeiaylikkake--eileeikka 29 (35)
T 2o6n_A 4 IEQAKKEIAYLIKKAKE--EILEEIKKA 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 45689999999999999 567777665
No 14
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.94 E-value=50 Score=33.92 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhcc---------------CcHHHHHHHhcCC-CCCCCcEEecc
Q psy558 23 EKAVDSLVKKLKKSK---------------GDIEELERALSCP-GQPSKCVTIPR 61 (692)
Q Consensus 23 kkAIeSLVKKLKekk---------------~eLesLi~AItt~-g~pSkCVTIpR 61 (692)
++.+..|+|||||++ +.|+.|+.|+-.+ +..|.+|+||-
T Consensus 122 ~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v~~ 176 (268)
T 4b4t_W 122 RDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTP 176 (268)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEeCC
Confidence 566778889999854 3489999999875 57899999986
No 15
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=24.17 E-value=85 Score=28.58 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=33.0
Q ss_pred HHHhhcccCChhhHHHHHHHHHHHHHHhhccC---cHHHHHHHhcCC
Q psy558 7 KKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKG---DIEELERALSCP 50 (692)
Q Consensus 7 ~~Ll~~rQG~EeE~fakkAIeSLVKKLKekk~---eLesLi~AItt~ 50 (692)
..|-..+++|-.+.|.-+||..||.|-+. .+ .-++|..||.|+
T Consensus 69 ~yl~~~~~~g~~D~~rl~ai~~lI~~~~~-g~plP~~~~l~~alrtG 114 (114)
T 2rnn_A 69 NFLQNALVVGKSDPYRVQAVKFLIERIRK-NEPLPVYKDLWNALRKG 114 (114)
T ss_dssp HHHHHTTCTTCCCHHHHHHHHHHHHHHHH-TCCCCCHHHHHHHHHHC
T ss_pred HHHHhccccCCCCHHHHHHHHHHHHHHhc-CCCCCCHHHHHHHHhcC
Confidence 33445566667889999999999999887 23 369999999764
No 16
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=21.91 E-value=37 Score=32.54 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=30.3
Q ss_pred hcccCChhhHHHHHHHHHHHHHHhhccCcHHHHHHHhcCCCC
Q psy558 11 GWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPGQ 52 (692)
Q Consensus 11 ~~rQG~EeE~fakkAIeSLVKKLKekk~eLesLi~AItt~g~ 52 (692)
|+-.-+-..+|.-.|+++||++=|+ |+||.+..-|..+..
T Consensus 83 C~~~~n~~se~vd~ALd~lv~~~Kk--DqLdki~~~~l~n~~ 122 (172)
T 1wy6_A 83 CGVINNTLNEHVNKALDILVIQGKR--DKLEEIGREILKNNE 122 (172)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHTTCH--HHHHHHHHHHC--CC
T ss_pred HHHHhcchHHHHHHHHHHHHHhccH--hHHHHHHHHHhccCC
Confidence 4555555667999999999998777 899999998765543
No 17
>3mko_A Glycoprotein C; trimeric coiled-coil, viral protein; 1.80A {Lymphocytic choriomeningitis virus}
Probab=21.38 E-value=73 Score=29.36 Aligned_cols=27 Identities=4% Similarity=0.282 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHhcC
Q psy558 20 KWAEKAVDSLVKKLKKSKGDIEELERALSC 49 (692)
Q Consensus 20 ~fakkAIeSLVKKLKekk~eLesLi~AItt 49 (692)
+|-|+||+.|=.+-|. +|+.|++||-+
T Consensus 22 dfNk~AI~~L~~~~~~---~lnl~~~aiNs 48 (137)
T 3mko_A 22 DYNKAALSKFKQDVES---ALHVFKTTVNS 48 (137)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4667898888777766 89999999865
No 18
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ...
Probab=20.35 E-value=1.1e+02 Score=28.86 Aligned_cols=49 Identities=10% Similarity=0.176 Sum_probs=35.0
Q ss_pred CCchhHHHHhhc--ccCCh--hhHHHHHHHHHHHHHHhhccCcHHHHHHHhcCCC
Q psy558 1 FTSPAVKKLLGW--KQGDE--EEKWAEKAVDSLVKKLKKSKGDIEELERALSCPG 51 (692)
Q Consensus 1 ~~~~iV~~Ll~~--rQG~E--eE~fakkAIeSLVKKLKekk~eLesLi~AItt~g 51 (692)
|.+|+|.+|... +.|.. -++....|++-+=+|.++ +-|+-|.+||..-+
T Consensus 13 ~~~~lv~kliN~lM~~GKKs~A~~Iv~~a~~~i~~kt~~--nPl~vl~~Ai~Nv~ 65 (151)
T 1rss_A 13 YGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQ--EPLKVFKQAVENVK 65 (151)
T ss_dssp TCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHhCC
Confidence 567899998776 77764 455555666666555544 78999999998654
No 19
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1
Probab=20.19 E-value=1.1e+02 Score=28.96 Aligned_cols=49 Identities=24% Similarity=0.296 Sum_probs=34.7
Q ss_pred CCchhHHHHhhc--ccCCh--hhHHHHHHHHHHHHHHhhccCcHHHHHHHhcCCC
Q psy558 1 FTSPAVKKLLGW--KQGDE--EEKWAEKAVDSLVKKLKKSKGDIEELERALSCPG 51 (692)
Q Consensus 1 ~~~~iV~~Ll~~--rQG~E--eE~fakkAIeSLVKKLKekk~eLesLi~AItt~g 51 (692)
|.+|+|.+|... +.|.. -++....|++-+=+|.++ +-|+-|.+||..-+
T Consensus 17 y~~~lV~kliN~lM~~GKKs~A~~Iv~~a~~~I~~kt~~--nPl~vl~~Ai~Nv~ 69 (155)
T 1hus_A 17 YNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRERTGK--DPMEVFEQALKNVM 69 (155)
T ss_dssp TCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHhCC
Confidence 567899988776 77764 455555666665555544 78999999998644
Done!