RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy558
(692 letters)
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 190
Score = 300 bits (769), Expect = 5e-99
Identities = 146/228 (64%), Positives = 164/228 (71%), Gaps = 40/228 (17%)
Query: 296 PFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRR 355
FW SI+YYELN RVGE FH S+ VDGFT+PSN+ RFCLG LSNVNRN+ +E TRR
Sbjct: 2 AFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNS-ERFCLGLLSNVNRNAAVELTRR 60
Query: 356 HIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEF 415
HIG+GV LYY+GGEV+AECLSDSAIFVQS NCN +G+H +TVCKIP GC+LKIFNNQEF
Sbjct: 61 HIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEF 120
Query: 416 AELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLSVIILWYFV 475
A LL+QSVN GFEAVY+LT+MCTI
Sbjct: 121 AALLAQSVNQGFEAVYQLTRMCTI------------------------------------ 144
Query: 476 LISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSP 523
RMSFVKGWGAEY RQ VTSTPCWIE+HL+GPLQWLDKVL QMGSP
Sbjct: 145 ---RMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSP 189
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 225
Score = 274 bits (703), Expect = 7e-89
Identities = 92/230 (40%), Positives = 121/230 (52%), Gaps = 10/230 (4%)
Query: 295 QPFWASIAYYELNSRVGEVFHCQSHS--VIVDGFTNPSNNLNRFCLGQLSNVNRNSTIEN 352
+W SIAY+E++ +VGE F S V VDG+ +PS +RFCLGQLSNV+R IE
Sbjct: 2 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGG-DRFCLGQLSNVHRTEAIER 60
Query: 353 TRRHIGKGVHLYYVG-GEVYAECLSDSAIFVQSRNCNHHHGFHQS-TVCKIPAGCSLKIF 410
R HIGKGV L G G+V+ CLSD A+FVQS + G V KI +K+F
Sbjct: 61 ARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVF 120
Query: 411 NNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAVKVPRQFSLSVII 470
+ ++ + Q A + I + I A+ + + V
Sbjct: 121 DLRQCHRQMQQQAATAQAAAAAQAA----AVAGNIPGPGSVGGIAPAISLSAAAGIGVDD 176
Query: 471 LWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQM 520
L ++ RMSFVKGWG +Y RQ + TPCWIEIHLH LQ LD+VL M
Sbjct: 177 LRRLCIL-RMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTM 225
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 219 bits (559), Expect = 4e-69
Identities = 85/127 (66%), Positives = 106/127 (83%), Gaps = 4/127 (3%)
Query: 1 FTSPAVKKLLGWKQGD---EEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPGQPSKCV 57
FT P VK+LLGWK+G+ +EEKW EKAV SLVKKLKK G ++ELE+A++ +KC+
Sbjct: 1 FTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKK-TGQLDELEKAITTQNVNTKCI 59
Query: 58 TIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEHCQFPFSAKQKDVCINPY 117
TIPRSLDGRLQVSHRKGLPHVIYCR+WRWPDL SHHEL+ +E C+F F+ K+ +VC+NPY
Sbjct: 60 TIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPY 119
Query: 118 HYKRVES 124
HY+RVE+
Sbjct: 120 HYQRVET 126
Score = 117 bits (294), Expect = 1e-31
Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 9/88 (10%)
Query: 507 HGPLQWLDKVLIQMGSPHQPI---------SSVSHRKGLPHVIYCRVWRWPDLQSHHELK 557
G L L+K + + I VSHRKGLPHVIYCR+WRWPDL SHHEL+
Sbjct: 39 TGQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELR 98
Query: 558 PLEHCQFPFSAKQKDVCINPYHYKRVES 585
+E C+F F+ K+ +VC+NPYHY+RVE+
Sbjct: 99 AMELCEFAFNMKKDEVCVNPYHYQRVET 126
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3),
transactivation domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 239
Score = 30.6 bits (69), Expect = 0.50
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 355 RHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQE 414
+G G+ L+ G ++A+ L + + + ++P +F+
Sbjct: 78 SCLGGGLALWRAGQWLWAQRLGHCHTYW-AVSEELLPNSGHGPDGEVPKDKEGGVFDLGP 136
Query: 415 F 415
F
Sbjct: 137 F 137
>d1ncqc_ b.121.4.1 (C:) Rhinovirus coat proteins {Human rhinovirus B
14 (HRV-14) [TaxId: 12131]}
Length = 236
Score = 29.4 bits (66), Expect = 1.2
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 218 PPAYSPPQDEKHGSQSPHSENAMDTGISSDVT-PVPY 253
PP PQD + H D G+ S + +P+
Sbjct: 133 PPGARGPQDRREAMLGTHVV--WDIGLQSTIVMTIPW 167
>d1pvc3_ b.121.4.1 (3:) Poliovirus coat proteins {Poliovirus type 3,
strain Sabin [TaxId: 12086]}
Length = 235
Score = 27.9 bits (62), Expect = 3.3
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 218 PPAYSPPQDEKHGSQSPHSENAMDTGISSDVT-PVPY 253
PP PP K H D G+ S T VP+
Sbjct: 136 PPGAQPPTSRKEAMLGTHVI--WDLGLQSSCTMVVPW 170
>d1bev3_ b.121.4.1 (3:) Bovine enterovirus coat proteins {Bovine
enterovirus, VG-5-27 [TaxId: 12064]}
Length = 242
Score = 27.1 bits (60), Expect = 5.7
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 218 PPAYSPPQDEKHGSQSPHSENAMDTGISSDVT-PVPY 253
PP P++ + H D G+ S +T +P+
Sbjct: 135 PPGGDMPRNREEAMLGTHVI--WDFGLQSSITLVIPW 169
>d1aym3_ b.121.4.1 (3:) Rhinovirus coat proteins {Human rhinovirus
16, (HRV-16) [TaxId: 31708]}
Length = 238
Score = 27.1 bits (60), Expect = 6.1
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 218 PPAYSPPQDEKHGSQSPHSENAMDTGISSDVT-PVPY 253
PP P+ K H D G+ S V+ VP+
Sbjct: 135 PPGIGKPRSRKEAMLGTHVV--WDVGLQSTVSLVVPW 169
>d2mev3_ b.121.4.1 (3:) Mengo encephalomyocarditis virus coat
proteins {Mengovirus [TaxId: 12107]}
Length = 231
Score = 27.1 bits (60), Expect = 6.9
Identities = 20/149 (13%), Positives = 50/149 (33%), Gaps = 28/149 (18%)
Query: 125 PVLPPIVVPRHSEFAPG--HSLLPYQQMAE-PT-MPHNISYSNNGFNQPHSPLSSVS--- 177
P+ V + + G L ++A+ PT + + + + ++ + +
Sbjct: 24 PIYGKTPVA-PANYMVGEYKDFL---EIAQIPTFIGNKVPNAVPYIEASNTAVKTQPLAV 79
Query: 178 ---SPASSNNPHSPYQS-----NGLPGKAQFNFEILSNFN----YLVSTETPPPAYSPPQ 225
+ + S ++ + G + F +L++ PP P
Sbjct: 80 YQVTLSCSCLANTFLAALSRNFAQYRGSLVYTFVFTGTAMMKGKFLIAYT--PPGAGKPT 137
Query: 226 DEKHGSQSPHSENAMDTGISSDVT-PVPY 253
Q+ ++ D G++S + VP+
Sbjct: 138 SRDQAMQATYAI--WDLGLNSSYSFTVPF 164
>d1ev13_ b.121.4.1 (3:) Human enterovirus B coat proteins {Human
echovirus 1 [TaxId: 46633]}
Length = 239
Score = 27.1 bits (60), Expect = 7.0
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 218 PPAYSPPQDEKHGSQSPHSENAMDTGISSDVT-PVPY 253
PP P+ K H D G+ S +P+
Sbjct: 137 PPGAGAPKTRKDAMLGTHVV--WDVGLQSSCVLCIPW 171
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 296
Score = 26.8 bits (58), Expect = 8.4
Identities = 18/227 (7%), Positives = 55/227 (24%), Gaps = 7/227 (3%)
Query: 343 NVNRNSTIENTRRHIGKGVH-LYYVG--GEVYAECLSDSAIFVQSRNCNHHHGFHQSTVC 399
+++ + + +G L G GE +D R G +
Sbjct: 24 SLDTATAARLANHLVDQGCDGLVVSGTTGESPT--TTDGEKIELLRAVLEAVGDRARVIA 81
Query: 400 KIPAGCSLK-IFNNQEFAELLSQSVNHGFEAVYELTKMCTISPIFCIRNKCNRTEIPFAV 458
+ I + A + + + + + + + + + +
Sbjct: 82 GAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDI 141
Query: 459 KVPRQFSLSVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLI 518
+ + + VK A+ H + + L + +
Sbjct: 142 PGRSAVPIEPDTIRALASHPNIVGVKDAKADLHSGAQIMADTGLAYYSGDDALNLPWLAM 201
Query: 519 QMGSPHQPISSVSHRKGLPHVIYCRVWRWPDLQSHHE-LKPLEHCQF 564
I+ ++ + + + + + PL +
Sbjct: 202 GATGFISVIAHLAAGQLRELLSAFGSGDIATARKINIAVAPLCNAMS 248
>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 148
Score = 26.1 bits (57), Expect = 9.9
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 398 VCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTK 435
VC + AE L + F+ +Y + K
Sbjct: 106 VCGGEGQHQFFAIKTGQQAEPLVVDLKDLFQVIYNVKK 143
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.432
Gapped
Lambda K H
0.267 0.0559 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,710,411
Number of extensions: 130246
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 20
Length of query: 692
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 600
Effective length of database: 1,144,436
Effective search space: 686661600
Effective search space used: 686661600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)