BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5581
         (240 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
           (Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
           Resolution
          Length = 459

 Score = 32.0 bits (71), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 194 FYCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGTYLSVLLT 235
            YC N+   R+ I   I+   +  A++H + GHGT  S+ L 
Sbjct: 59  LYCVNVGYGRQEIAEAIADQARELAYYHSYVGHGTEASITLA 100


>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
           From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
          Length = 459

 Score = 31.6 bits (70), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 190 NVDKF---YCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGTYLSVLL 234
           ++D F   YC N+   R+ I   I+   +  A++H + GHGT  S+ L
Sbjct: 53  SIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITL 100


>pdb|3VR8|D Chain D, Mitochondrial Rhodoquinol-Fumarate Reductase From The
           Parasitic Nematode Ascaris Suum
 pdb|3VR8|H Chain H, Mitochondrial Rhodoquinol-Fumarate Reductase From The
           Parasitic Nematode Ascaris Suum
 pdb|3VRB|D Chain D, Mitochondrial Rhodoquinol-Fumarate Reductase From The
           Parasitic Nematode Ascaris Suum With The Specific
           Inhibitor Flutolanil And Substrate Fumarate
 pdb|3VRB|H Chain H, Mitochondrial Rhodoquinol-Fumarate Reductase From The
           Parasitic Nematode Ascaris Suum With The Specific
           Inhibitor Flutolanil And Substrate Fumarate
          Length = 156

 Score = 27.3 bits (59), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 41  LVMMLQALYGIYDVFRNDFEKKFIIAYTFLFVVGMGSWAFHMTLLYEMQLFDE 93
           L + L   +G++ V  ND+ + F++  T    V +G++ F   LL  +  F+E
Sbjct: 90  LALTLHVHWGVWGVV-NDYGRPFVLGDTLAAAVRVGAYIFTACLLAGLLYFNE 141


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.141    0.474 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,069,607
Number of Sequences: 62578
Number of extensions: 266337
Number of successful extensions: 634
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 4
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)