Query psy5581
Match_columns 240
No_of_seqs 108 out of 429
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 21:09:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05875 Ceramidase: Ceramidas 100.0 1.7E-69 3.6E-74 478.6 22.5 231 8-239 1-238 (262)
2 KOG2329|consensus 100.0 2E-51 4.3E-56 358.1 11.1 237 1-239 1-242 (276)
3 PRK15087 hemolysin; Provisiona 98.0 0.0013 2.7E-08 57.1 19.0 180 32-235 15-212 (219)
4 PF12036 DUF3522: Protein of u 98.0 0.00013 2.7E-09 61.9 11.6 43 35-85 10-52 (186)
5 PF04080 Per1: Per1-like ; In 97.9 0.0026 5.7E-08 56.8 19.3 194 29-236 50-263 (267)
6 PF03006 HlyIII: Haemolysin-II 97.8 0.00074 1.6E-08 57.5 14.5 189 32-230 5-220 (222)
7 PF15100 TMEM187: TMEM187 prot 97.8 0.0065 1.4E-07 52.6 19.1 193 27-235 41-240 (242)
8 PF13965 SID-1_RNA_chan: dsRNA 97.6 0.0055 1.2E-07 60.2 17.9 96 16-111 253-364 (570)
9 TIGR01065 hlyIII channel prote 97.5 0.017 3.6E-07 49.4 17.4 180 33-234 2-199 (204)
10 KOG2970|consensus 96.9 0.078 1.7E-06 47.8 15.7 189 30-235 101-306 (319)
11 COG1272 Predicted membrane pro 96.8 0.075 1.6E-06 46.4 14.5 183 31-235 19-219 (226)
12 COG5237 PER1 Predicted membran 94.8 1.5 3.3E-05 38.9 14.0 185 31-234 99-305 (319)
13 KOG4243|consensus 92.6 0.035 7.6E-07 48.5 0.1 171 33-228 86-277 (298)
14 PF08255 Leader_Trp: Trp-opero 83.3 0.094 2E-06 25.7 -2.0 9 214-222 5-13 (14)
15 PF10754 DUF2569: Protein of u 64.5 27 0.00058 28.2 6.4 60 35-96 58-120 (149)
16 PF04238 DUF420: Protein of un 36.9 2E+02 0.0044 22.9 7.2 45 35-79 7-53 (133)
17 PRK10905 cell division protein 27.1 43 0.00093 30.8 2.0 16 65-80 6-21 (328)
18 COG2917 Intracellular septatio 27.0 3.9E+02 0.0084 22.6 7.7 17 88-104 2-18 (180)
19 PF07695 7TMR-DISM_7TM: 7TM di 26.1 3.4E+02 0.0074 21.6 15.9 21 172-192 152-172 (205)
20 PF03203 MerC: MerC mercury re 25.9 3E+02 0.0065 21.0 10.7 18 91-108 1-18 (116)
21 PLN02680 carbon-monoxide oxyge 24.9 2.7E+02 0.006 24.4 6.5 21 219-239 154-174 (232)
22 PF04973 NMN_transporter: Nico 23.5 4.2E+02 0.009 21.7 11.0 70 34-103 46-127 (181)
23 PF13231 PMT_2: Dolichyl-phosp 22.7 3.5E+02 0.0075 20.6 14.3 21 89-109 71-91 (159)
24 KOG2546|consensus 22.3 29 0.00063 33.1 0.0 11 18-28 32-42 (483)
25 PRK11901 hypothetical protein; 21.8 58 0.0013 30.0 1.8 16 65-80 44-59 (327)
26 PRK13841 conjugal transfer pro 21.7 1.3E+02 0.0028 28.5 4.1 39 66-104 219-261 (391)
27 PF14325 DUF4383: Domain of un 20.9 1.6E+02 0.0035 23.2 4.0 45 34-78 45-93 (125)
28 PHA00159 endonuclease I 20.2 32 0.0007 27.9 -0.1 16 9-24 101-116 (148)
No 1
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=100.00 E-value=1.7e-69 Score=478.63 Aligned_cols=231 Identities=38% Similarity=0.728 Sum_probs=212.8
Q ss_pred CCCccccccccccccccccccccccchHHHHhhHHHHHHHHHHHhhhhhcCCchHHHHHHHHHHHHhhhhHhhhcCccch
Q psy5581 8 AGYWGERTSTVDWCEKNYVESYYVAEMWNTVSNLVMMLQALYGIYDVFRNDFEKKFIIAYTFLFVVGMGSWAFHMTLLYE 87 (240)
Q Consensus 8 ~~~wg~~ts~~d~CE~~y~~s~~iaEf~NtlSNl~fl~~~l~g~~~~~~~~~~~~~~~~~~~l~~vGiGS~lFH~tl~~~ 87 (240)
+|||||+||++|||||||++|+|||||+||+||++|+++|++|+++.+|++.+.++.++++++++||+||++||+|++++
T Consensus 1 ~g~wg~~ts~~dwCE~nY~~s~yiAEf~NtlSNl~fi~~al~gl~~~~~~~~~~~~~l~~~~l~~VGiGS~~FHaTl~~~ 80 (262)
T PF05875_consen 1 DGYWGPPTSTIDWCEENYVVSPYIAEFWNTLSNLAFIVAALYGLYLARRRGLERRFALLYLGLALVGIGSFLFHATLSYW 80 (262)
T ss_pred CCCCCCCCcccccchhccccCcccchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHhHHHHHhChhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHhhhHhhcccC-CCCCchhHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHHHHHhhh-
Q psy5581 88 MQLFDELPMVWGTCFSLYLLCDIKS-PKSLSKPGLVAGLLLSISFTLIYLYNPLPVLHNTAFAILAISSYVLQICMIRQ- 165 (240)
Q Consensus 88 ~ql~DelPM~~~~~~~~~~~~~~r~-~~~~~~~~~~~l~~~~~~~t~~~~~~~~p~~~~~~y~~~~~~i~~~~~~l~~~- 165 (240)
+|++||+||+++++.+++.++.++. +.+.+......++.+++.+|+.+...++|..|++.|+.+++.+..++.++.++
T Consensus 81 ~ql~DelPMl~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~t~~~~~~~~p~~~~~~f~~~~~~~~~~~~~~~~~~ 160 (262)
T PF05875_consen 81 TQLLDELPMLWATLLFLYIVLTRRYSSPRYRLALPLLLFIYAVVVTVLYFVLDNPVFHQIAFASLVLLVILRSIYLIRRR 160 (262)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcccccCchhhHHHHHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998666 55556667777777788888888888899999999999999999998887664
Q ss_pred -----hchhhhHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhccCCccccccchhhHHHHHHHHHHHHHHHHHHhhc
Q psy5581 166 -----TRCRLCATLYALSFACYLFGFALWNVDKFYCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGTYLSVLLTVLSG 239 (240)
Q Consensus 166 -----~~~~~~~~~~~~a~~~f~la~~~w~~D~~~C~~l~~~r~~ig~p~~~~l~~H~~WHil~a~~~y~~~~~~~~~~ 239 (240)
++++. +++.+.|+++|++|+.+|++|+.+|+.++.+|+.+|+|+|+++|+|+||||+||+|+|+.+++.++++
T Consensus 161 ~~~~~~~~~~-~~l~~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~~~~~~ 238 (262)
T PF05875_consen 161 VRDACRRRRA-RRLLLFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVFVAYLR 238 (262)
T ss_pred cCchhhchHH-HHHHHHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333 78899999999999999999999999999999999999999999999999999999999999988865
No 2
>KOG2329|consensus
Probab=100.00 E-value=2e-51 Score=358.15 Aligned_cols=237 Identities=31% Similarity=0.529 Sum_probs=198.2
Q ss_pred CCCCCCC-CCCccccccccccccccccccccccchHHHHhhHHHHHHHHHHHhhhhhcCCchHHHHHHHHHHHHhhhhHh
Q psy5581 1 MAPLVDQ-AGYWGERTSTVDWCEKNYVESYYVAEMWNTVSNLVMMLQALYGIYDVFRNDFEKKFIIAYTFLFVVGMGSWA 79 (240)
Q Consensus 1 ~~~~~~~-~~~wg~~ts~~d~CE~~y~~s~~iaEf~NtlSNl~fl~~~l~g~~~~~~~~~~~~~~~~~~~l~~vGiGS~l 79 (240)
|.|..+. +|+||+.||++||||+||+.|+|||||.||+||++|++.+++++.+..|++.++|+.+..++++++|+||.+
T Consensus 1 ~~~~~g~~~g~W~~~tS~~dWCE~NY~~s~yIAEf~NT~sN~~fil~~~~~l~~~y~~~~e~~~~l~~v~~~ivgl~S~~ 80 (276)
T KOG2329|consen 1 RVFKLGLFSGLWGETTSTVDWCEENYAVSPYIAEFANTESNSPFILLAFIGLHCAYRQKLEKRAYLICVLFTIVGLGSMY 80 (276)
T ss_pred CCCCcCCCcccccCcCchhhhhhhchhhhHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 4566665 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccchhhhhhhhhHHH-HHHHhhhHhhccc--CCCCCchhHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHH
Q psy5581 80 FHMTLLYEMQLFDELPMVW-GTCFSLYLLCDIK--SPKSLSKPGLVAGLLLSISFTLIYLYNPLPVLHNTAFAILAISSY 156 (240)
Q Consensus 80 FH~tl~~~~ql~DelPM~~-~~~~~~~~~~~~r--~~~~~~~~~~~~l~~~~~~~t~~~~~~~~p~~~~~~y~~~~~~i~ 156 (240)
||+||++..|++||+||+| ....++.+.+ ++ .+.+.+....+..++++.++|+.+.+..+|..|++.|+.+.+.+.
T Consensus 81 fH~TL~~~~QllDElamiw~i~~~~~~cy~-p~~~~~~~~~~~~tF~~~~~~~avt~~~l~~~~p~~n~v~~~~~s~~v~ 159 (276)
T KOG2329|consen 81 FHMTLVYKGQLLDELAMIWEIPLVSLLCYF-PKFLVKETFSKRLTFILVLLILAVTIVGLSFLEPIVNAVALGFFSLPVA 159 (276)
T ss_pred hhhhHHHhheehhhhhHHHHHHHHHHhhcc-hhhhccccccchhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999 3333322222 22 112222334445666677777788889999999999999988888
Q ss_pred HHHHHHhh-hhchhhhHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhccCCccccccchhhHHHHHHHHHHHHHHHHH
Q psy5581 157 VLQICMIR-QTRCRLCATLYALSFACYLFGFALWNVDKFYCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGTYLSVLLT 235 (240)
Q Consensus 157 ~~~~~l~~-~~~~~~~~~~~~~a~~~f~la~~~w~~D~~~C~~l~~~r~~ig~p~~~~l~~H~~WHil~a~~~y~~~~~~ 235 (240)
+.+++..+ ..++. ++.+...+.+.+++|+.+|..|+.+|+++.++|+++.+|.|.++++|+|||++++++.|..+.+.
T Consensus 160 v~~~~~~~~~~~~~-~r~l~~~~~i~~~v~~~~w~~D~~~c~f~~~~~~~l~~~~gi~l~~~a~Whv~s~~~~y~~~~~~ 238 (276)
T KOG2329|consen 160 VVSMYEYYIHVNDA-KRNLGATGVILWLVGFIFWFLDRLLCSFWLRLRRYLALPLGILLELHAWWHVLTSIGSYRTITFL 238 (276)
T ss_pred HHhhhhheeeccHh-HhccCceeeeehhhhcchhhhhHHHHHHHHHhhhhhccHHHHHHHHHHHHhheecCChhHHHHHH
Confidence 88887654 33342 23333336888899999999999999999999999999999889999999999999999999998
Q ss_pred Hhhc
Q psy5581 236 VLSG 239 (240)
Q Consensus 236 ~~~~ 239 (240)
.+++
T Consensus 239 ~~~~ 242 (276)
T KOG2329|consen 239 LYDR 242 (276)
T ss_pred HHhH
Confidence 8765
No 3
>PRK15087 hemolysin; Provisional
Probab=98.02 E-value=0.0013 Score=57.09 Aligned_cols=180 Identities=18% Similarity=0.204 Sum_probs=97.6
Q ss_pred cchHHHHhhHHHHHHHHHHHhhhh----hcCCc--hH--HHHHHHHHHHHhhhhHhhhcCcc----chhhhhhhhhHHHH
Q psy5581 32 AEMWNTVSNLVMMLQALYGIYDVF----RNDFE--KK--FIIAYTFLFVVGMGSWAFHMTLL----YEMQLFDELPMVWG 99 (240)
Q Consensus 32 aEf~NtlSNl~fl~~~l~g~~~~~----~~~~~--~~--~~~~~~~l~~vGiGS~lFH~tl~----~~~ql~DelPM~~~ 99 (240)
-|..|..|.+.-++.++.|..... .++.+ .. ..+...++.+.=..|++||+..+ +..+-+|-..|...
T Consensus 15 eE~~N~~tH~ig~~~a~~~~~~l~~~~~~~~~~~~~~~~~~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~~I~ll 94 (219)
T PRK15087 15 EEIANSISHGIGLVFGIVGLVLLLVQAVDANADATAITSYSLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHCAIYLL 94 (219)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHHHHHHH
Confidence 689999999966655655543221 11212 11 23445667777778999998863 35567999988777
Q ss_pred HHHhhhH--hhcccCCCCCchh-HHHH--HHHHHHHHHHhHhhcccc-chhHHHHHHHHHHHHHHHHHHhhhhchhhhHH
Q psy5581 100 TCFSLYL--LCDIKSPKSLSKP-GLVA--GLLLSISFTLIYLYNPLP-VLHNTAFAILAISSYVLQICMIRQTRCRLCAT 173 (240)
Q Consensus 100 ~~~~~~~--~~~~r~~~~~~~~-~~~~--l~~~~~~~t~~~~~~~~p-~~~~~~y~~~~~~i~~~~~~l~~~~~~~~~~~ 173 (240)
+..-..- .+..+. .++.. +..+ +++.++.... ...+++ .+....|..+....+.....+.+..++.. -.
T Consensus 95 IaGsytP~~~~~~~~--~~~~~l~~~iW~~a~~Gi~~~~--~~~~~~r~l~~~~Yl~mGw~~v~~~~~l~~~~~~~~-l~ 169 (219)
T PRK15087 95 IAGTYTPFLLVGLDS--PLARGLMIVIWSLALLGILFKL--AFAHRFKVLSLVTYLAMGWLSLIVIYQLAIKLAIGG-VT 169 (219)
T ss_pred HHHhhHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHH--HhcCCCchHHHHHHHHHHHHHHHHHHHHHHhCCHHH-HH
Confidence 6653211 111211 12212 2222 2222322211 122333 35557776665544333222222112221 34
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhccCCccccccchhhHHHHHHHHHHHHHHHHH
Q psy5581 174 LYALSFACYLFGFALWNVDKFYCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGTYLSVLLT 235 (240)
Q Consensus 174 ~~~~a~~~f~la~~~w~~D~~~C~~l~~~r~~ig~p~~~~l~~H~~WHil~a~~~y~~~~~~ 235 (240)
++..+...+.+|..+-..|+ .++-|.+||++.-+|+.......
T Consensus 170 ~l~~GG~~Y~~G~~fY~~~~-------------------~p~~H~IwH~fVl~ga~~H~~ai 212 (219)
T PRK15087 170 LLAVGGVVYSLGVIFYVCKR-------------------IPYNHAIWHGFVLGGSVCHFLAI 212 (219)
T ss_pred HHHHHhHHHHhhHHHHccCC-------------------CCCchhHHHHHHHHHHHHHHHHH
Confidence 45566778888877776652 12569999999999997766543
No 4
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=97.97 E-value=0.00013 Score=61.86 Aligned_cols=43 Identities=21% Similarity=0.106 Sum_probs=27.8
Q ss_pred HHHHhhHHHHHHHHHHHhhhhhcCCchHHHHHHHHHHHHhhhhHhhhcCcc
Q psy5581 35 WNTVSNLVMMLQALYGIYDVFRNDFEKKFIIAYTFLFVVGMGSWAFHMTLL 85 (240)
Q Consensus 35 ~NtlSNl~fl~~~l~g~~~~~~~~~~~~~~~~~~~l~~vGiGS~lFH~tl~ 85 (240)
.=|+||++|+-......+| |...| ...-...++.|+.||+.-.
T Consensus 10 ~l~lSnl~~lP~i~~a~rr--~~~~E------a~v~~~tm~~S~~YHacd~ 52 (186)
T PF12036_consen 10 LLTLSNLAFLPTIYVAVRR--RYHFE------AFVYTFTMFFSTFYHACDS 52 (186)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhHHH------HHHHHHHHHHHHhcccccC
Confidence 3589999999665555544 11112 2233456789999999863
No 5
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=97.91 E-value=0.0026 Score=56.77 Aligned_cols=194 Identities=17% Similarity=0.053 Sum_probs=102.4
Q ss_pred ccccchHHHHhhHHHHHHHHHHHhhhhhcC---Cch-H-HHHHHHHHHHHhhhhHhhhcCccchhhhhhhhhHHHHHHHh
Q psy5581 29 YYVAEMWNTVSNLVMMLQALYGIYDVFRND---FEK-K-FIIAYTFLFVVGMGSWAFHMTLLYEMQLFDELPMVWGTCFS 103 (240)
Q Consensus 29 ~~iaEf~NtlSNl~fl~~~l~g~~~~~~~~---~~~-~-~~~~~~~l~~vGiGS~lFH~tl~~~~ql~DelPM~~~~~~~ 103 (240)
-.+-||.-++-++.=+++=..|+++.+|+. .+. + +.+....-+..=+-|+.||+-=..+++-+|=..=...++.-
T Consensus 50 ~GiQEp~Sv~FSllNl~~h~~~~~~~~~~~~~~~p~~~~~~~~~~v~~naW~wStvFH~RD~~~TE~lDYf~A~a~vl~~ 129 (267)
T PF04080_consen 50 LGIQEPASVLFSLLNLLAHYRGLRKFRRQVPRNSPMYPYYIIYAIVSMNAWIWSTVFHTRDTPLTEKLDYFSAGATVLFG 129 (267)
T ss_pred hcCchHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCcCeeehHHHHHHHHHHHHHHHHHhcccHhhHhHHhhhHHHHHHH
Confidence 357799998888766666677776665421 111 1 12222222333367999999999999999987655555444
Q ss_pred hhHhhc--ccCCCCCchhHHHHHHHHHHHHH-HhHhhccc---cchh--HHHHHHHHHHHHHHHHHHhhhhchhh-----
Q psy5581 104 LYLLCD--IKSPKSLSKPGLVAGLLLSISFT-LIYLYNPL---PVLH--NTAFAILAISSYVLQICMIRQTRCRL----- 170 (240)
Q Consensus 104 ~~~~~~--~r~~~~~~~~~~~~l~~~~~~~t-~~~~~~~~---p~~~--~~~y~~~~~~i~~~~~~l~~~~~~~~----- 170 (240)
++.... .+...+......+.....++..+ +.|....+ ..+- ++..++...++...-.+..+++.++.
T Consensus 130 l~~~~~R~f~l~~~~~~~~~~~~~~~~~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~~~~~~~~ 209 (267)
T PF04080_consen 130 LYAAIVRIFRLYRRRRLRRIFTALCIAFYIAHVSYLSFVRFDYGYNMKANVAVGLLQNILWLLWSFRNYRRYPSVKKSYS 209 (267)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHccccccccHhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchh
Confidence 444332 12211111111111111111111 33332222 1111 34445554444332222111111110
Q ss_pred -hHHH-HHHHHHHHHHHHHHHHhhHHhhhhhhhhhhccCCccccccchhhHHHHHHHHHHHHHHHHHH
Q psy5581 171 -CATL-YALSFACYLFGFALWNVDKFYCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGTYLSVLLTV 236 (240)
Q Consensus 171 -~~~~-~~~a~~~f~la~~~w~~D~~~C~~l~~~r~~ig~p~~~~l~~H~~WHil~a~~~y~~~~~~~ 236 (240)
+++. ...-.+...+|..+|..|-. |+..++--|++||+.|..-.++.-.+++
T Consensus 210 ~~~~~~p~~~v~~~~lam~LEl~DFp--------------P~~~~lDAHALWHl~Tip~~~~wy~Fl~ 263 (267)
T PF04080_consen 210 KRWKLWPILFVVLTILAMSLELFDFP--------------PIFWLLDAHALWHLATIPPTYLWYDFLI 263 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC--------------cccccchHHHHHHHHHhhHHHHHHHHHH
Confidence 0122 12456677888999999972 5555678899999999998888766654
No 6
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=97.84 E-value=0.00074 Score=57.51 Aligned_cols=189 Identities=16% Similarity=0.044 Sum_probs=96.5
Q ss_pred cchHHHHhhHHHHHHHHHHHhhh---hhcCC-c--h--HHHHHHHHHHHHhhhhHhhhcC-------ccchhhhhhhhhH
Q psy5581 32 AEMWNTVSNLVMMLQALYGIYDV---FRNDF-E--K--KFIIAYTFLFVVGMGSWAFHMT-------LLYEMQLFDELPM 96 (240)
Q Consensus 32 aEf~NtlSNl~fl~~~l~g~~~~---~~~~~-~--~--~~~~~~~~l~~vGiGS~lFH~t-------l~~~~ql~DelPM 96 (240)
.|..|..|++.-.+..+...... .+.+. + . ...+...+...--+.|+.||+. .++..+.+|-..|
T Consensus 5 NEt~NiwtHll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~~gI 84 (222)
T PF03006_consen 5 NETVNIWTHLLGAILFLALLIFLLSLASSPSFSPWDYIPFLIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDYAGI 84 (222)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcchhhh
Confidence 58999999996655443333221 11111 1 1 2334567777778899999992 3445678899998
Q ss_pred HHHHHHhhhHhh--cccCCCCCchhHHHHHH---HHHHHHHHhHhhc--ccc-chhHHHHHHHHHHHHHHHHH----Hhh
Q psy5581 97 VWGTCFSLYLLC--DIKSPKSLSKPGLVAGL---LLSISFTLIYLYN--PLP-VLHNTAFAILAISSYVLQIC----MIR 164 (240)
Q Consensus 97 ~~~~~~~~~~~~--~~r~~~~~~~~~~~~l~---~~~~~~t~~~~~~--~~p-~~~~~~y~~~~~~i~~~~~~----l~~ 164 (240)
...+..-..... ........+........ +.++..... ... ++. ......|..+.......... +-.
T Consensus 85 ~l~i~gs~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~~~~~~ 163 (222)
T PF03006_consen 85 FLLIAGSYTPFIYYGFYCHPWLGWFYLAFIWILALIGIVLSLF-PCFSSPRFRWLRTIFFLLLGWSGIIPIFHRIFFLGG 163 (222)
T ss_pred hHhHhhhhhhHHHhhccccchHHHHHHHHHHHHHHHhHHhhcc-hhhcCCccceeeehHhHHHHHHHHhhhHHHHHHhcc
Confidence 877665432222 11111222222221111 122222111 111 112 23345554443332222111 111
Q ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhccCCccccccchhhHHHHHHHHHHHH
Q psy5581 165 QTRCRLCATLYALSFACYLFGFALWNVDKFYCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGTYL 230 (240)
Q Consensus 165 ~~~~~~~~~~~~~a~~~f~la~~~w~~D~~~C~~l~~~r~~ig~p~~~~l~~H~~WHil~a~~~y~ 230 (240)
..++.. -+....+...+.+|-++-..|-..+-. +.|+=...+.|-+||++..+|+..
T Consensus 164 ~~~~~~-~~~~~~~~~~y~~G~~fy~~~~PEr~~--------pg~fD~~g~sHqi~Hi~v~~~~~~ 220 (222)
T PF03006_consen 164 WGSPDP-LWLLILGGVLYLLGAVFYATRIPERWF--------PGKFDIWGHSHQIWHIFVVLAALC 220 (222)
T ss_pred ccchHH-HHHHHHHHHHHHHhHHHhhhccccccC--------CCCcCCCCccHHHHHHHHHHHHHH
Confidence 111111 356667889999999998888332111 011111247899999999998865
No 7
>PF15100 TMEM187: TMEM187 protein family
Probab=97.79 E-value=0.0065 Score=52.61 Aligned_cols=193 Identities=13% Similarity=0.055 Sum_probs=110.1
Q ss_pred ccccccchHHHHhhHHHHHHHHHHHhhhhhcCC---chHH--HHHHHHHHHHhhhhHhhhcCccchhhhhhhhhHH-HHH
Q psy5581 27 ESYYVAEMWNTVSNLVMMLQALYGIYDVFRNDF---EKKF--IIAYTFLFVVGMGSWAFHMTLLYEMQLFDELPMV-WGT 100 (240)
Q Consensus 27 ~s~~iaEf~NtlSNl~fl~~~l~g~~~~~~~~~---~~~~--~~~~~~l~~vGiGS~lFH~tl~~~~ql~DelPM~-~~~ 100 (240)
-+.+.+-|.|++.|+.|++.|+|.+++..+.+. +.++ .+....-..-|.=-+++=+|.++..-.+|+-..+ ++.
T Consensus 41 LP~~LaMPfNslvNv~Y~llG~yWL~~~~~~~~~~~~a~Y~k~vfa~mAl~YgpVQwlri~Tq~r~~AvLDQW~tLPifA 120 (242)
T PF15100_consen 41 LPAFLAMPFNSLVNVAYVLLGWYWLRRAGKAPGTPARARYLKDVFAWMALHYGPVQWLRIATQTRRAAVLDQWFTLPIFA 120 (242)
T ss_pred chHHhhccHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhhccHHHHHHHHhhHHHH
Confidence 468999999999999999999999877543222 2233 3344444456666778888999998888875444 334
Q ss_pred HHhhhHhhcccCCCCCchhHHHHHHHHHHHHHHhH-hhccccchhHHHHHHHHHHHHHHHHHHhhhhchhhhHHHHHHHH
Q psy5581 101 CFSLYLLCDIKSPKSLSKPGLVAGLLLSISFTLIY-LYNPLPVLHNTAFAILAISSYVLQICMIRQTRCRLCATLYALSF 179 (240)
Q Consensus 101 ~~~~~~~~~~r~~~~~~~~~~~~l~~~~~~~t~~~-~~~~~p~~~~~~y~~~~~~i~~~~~~l~~~~~~~~~~~~~~~a~ 179 (240)
....++.+-+| .++-.... .+-..++ .-| .....|..+.++.++-++..........++..+..-.+.+..|.
T Consensus 121 W~v~Wc~~l~~---GW~p~~~l--~ie~~Sl-~SY~laLlHp~GFEvaLG~hI~~av~~a~~~~~r~g~~~s~~yl~La~ 194 (242)
T PF15100_consen 121 WVVAWCLYLDR---GWKPWRFL--AIECLSL-LSYGLALLHPRGFEVALGIHILAAVGQALRTQFRYGDASSLTYLVLAV 194 (242)
T ss_pred HHHHHHHHHHc---CccHHHHH--HHHHHHH-HHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhhhCCcccHHHHHHHH
Confidence 44444544333 23211111 1111111 112 22335666666666655555555433322111111135555666
Q ss_pred HHHHHHHHHHHhhHHhhhhhhhhhhccCCccccccchhhHHHHHHHHHHHHHHHHH
Q psy5581 180 ACYLFGFALWNVDKFYCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGTYLSVLLT 235 (240)
Q Consensus 180 ~~f~la~~~w~~D~~~C~~l~~~r~~ig~p~~~~l~~H~~WHil~a~~~y~~~~~~ 235 (240)
...+.=.++=..|.+.=. ++-++| +.||+|=-+...+-..+...+.
T Consensus 195 lSclgFvvLkl~D~~La~-~~lFq~---------lTGhFWSKvcdvlqfH~af~fl 240 (242)
T PF15100_consen 195 LSCLGFVVLKLLDHELAR-WRLFQR---------LTGHFWSKVCDVLQFHFAFLFL 240 (242)
T ss_pred HHHHHHHHHHHhHHHHHh-hHHHHH---------hcccHHHHHHHHHHHHHHHhhh
Confidence 666655556677886633 343443 5889998888877666555443
No 8
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=97.59 E-value=0.0055 Score=60.18 Aligned_cols=96 Identities=21% Similarity=0.162 Sum_probs=66.1
Q ss_pred ccccccccccccc---ccccchHHHHhhHHHHHHHHHHHhhhhh------cCC----ch---HHHHHHHHHHHHhhhhHh
Q psy5581 16 STVDWCEKNYVES---YYVAEMWNTVSNLVMMLQALYGIYDVFR------NDF----EK---KFIIAYTFLFVVGMGSWA 79 (240)
Q Consensus 16 s~~d~CE~~y~~s---~~iaEf~NtlSNl~fl~~~l~g~~~~~~------~~~----~~---~~~~~~~~l~~vGiGS~l 79 (240)
..-|-|==||.=+ ....-|=|.+||+.|++.|+.-+....| ++. +. .+..+-++++.-|+-|+.
T Consensus 253 gn~D~CyyNf~Cs~p~~~~~~FN~v~Sn~gy~~lG~lfliiv~~r~~~~~~~~~~gi~~~~~~~~~~g~~li~egi~sa~ 332 (570)
T PF13965_consen 253 GNQDMCYYNFLCSHPLGGFSAFNNVFSNIGYVLLGLLFLIIVFRRKIFHRQPTSYGIPQHYGLFYAMGLALIMEGILSAC 332 (570)
T ss_pred CCCceeeeehhhhcccccccchhhhHhhHHHHHHHHHHHHHHHHhhhhccccccCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 5667787775443 4556677899999999998744422211 111 12 244567788889999999
Q ss_pred hhcCccchhhhhhhhhHHHHHHHhhhHhhccc
Q psy5581 80 FHMTLLYEMQLFDELPMVWGTCFSLYLLCDIK 111 (240)
Q Consensus 80 FH~tl~~~~ql~DelPM~~~~~~~~~~~~~~r 111 (240)
||.=|++..-..|.-=|-+......--++..|
T Consensus 333 yh~CPn~~~fqfdt~fmyvi~~L~~lkiyq~R 364 (570)
T PF13965_consen 333 YHICPNRSNFQFDTSFMYVIAGLCMLKIYQKR 364 (570)
T ss_pred hhcCcCchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999888776655433455433
No 9
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=97.47 E-value=0.017 Score=49.43 Aligned_cols=180 Identities=13% Similarity=0.064 Sum_probs=91.8
Q ss_pred chHHHHhhHHHHHHHHHHHh----hhhhcC-CchH--HHHHHHHHHHHhhhhHhhhcCcc-----chhhhhhhhhHHHHH
Q psy5581 33 EMWNTVSNLVMMLQALYGIY----DVFRND-FEKK--FIIAYTFLFVVGMGSWAFHMTLL-----YEMQLFDELPMVWGT 100 (240)
Q Consensus 33 Ef~NtlSNl~fl~~~l~g~~----~~~~~~-~~~~--~~~~~~~l~~vGiGS~lFH~tl~-----~~~ql~DelPM~~~~ 100 (240)
|..|..|-+.=.+.++.+.. +..++. ...+ +.+...+...-=..|+.||+... +..+-+|-..|...+
T Consensus 2 e~~N~~tH~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~lI 81 (204)
T TIGR01065 2 EIANAITHGIGAVLSIIALALLVIYSWDHGGAVAVLGFSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVLI 81 (204)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHHH
Confidence 78999999955544443331 111111 1122 23345666666688999998883 245578998888776
Q ss_pred HHhhhHhh--cccCCCCCchhHHHH---HHHHHHHHHHhHhhcccc-chhHHHHHHHHHHHHHHHHHHhhhhchhhhHHH
Q psy5581 101 CFSLYLLC--DIKSPKSLSKPGLVA---GLLLSISFTLIYLYNPLP-VLHNTAFAILAISSYVLQICMIRQTRCRLCATL 174 (240)
Q Consensus 101 ~~~~~~~~--~~r~~~~~~~~~~~~---l~~~~~~~t~~~~~~~~p-~~~~~~y~~~~~~i~~~~~~l~~~~~~~~~~~~ 174 (240)
..-..-.. ..+... +..+... +.+.++.... ...+++ .+-...|..+....+....-+.+..++.. -..
T Consensus 82 aGsytP~~~~~~~~~~--~~~~~~~iw~la~~gi~~~~--~~~~~~r~~r~~~y~~~G~~~v~~~~~~~~~~~~~~-~~~ 156 (204)
T TIGR01065 82 AGTYTPFLLLALPGPL--GWTVLWIIWGLAIGGIIYKL--FFHKRPRWLSLFLYLIMGWLVVLVIKPLYHNLPGAG-FSL 156 (204)
T ss_pred HHhhHHHHHHHcCCcH--HHHHHHHHHHHHHHHHHHHH--HccCCCchhHHHHHHHHHHHHHHHHHHHHHhCCHHH-HHH
Confidence 65331211 111111 2122111 1112211111 122222 34556776554443221111112112211 244
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhhhhhccCCccccccchhhHHHHHHHHHHHHHHHH
Q psy5581 175 YALSFACYLFGFALWNVDKFYCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGTYLSVLL 234 (240)
Q Consensus 175 ~~~a~~~f~la~~~w~~D~~~C~~l~~~r~~ig~p~~~~l~~H~~WHil~a~~~y~~~~~ 234 (240)
...+.+.+.+|..+-..|... |+.+ |.+||++.-+|+......
T Consensus 157 l~~gg~~Y~~G~~fY~~~~p~-------------~~~~----H~iwH~fV~~g~~~h~~~ 199 (204)
T TIGR01065 157 LAAGGLLYTVGAIFYALKWPI-------------PFTY----HAIWHLFVLGASACHFVA 199 (204)
T ss_pred HHHHhHHHHcchHheeecCCC-------------CCCc----ChHHHHHHHHHHHHHHHH
Confidence 556777888888877766422 2211 999999999998766544
No 10
>KOG2970|consensus
Probab=96.88 E-value=0.078 Score=47.82 Aligned_cols=189 Identities=13% Similarity=0.054 Sum_probs=97.4
Q ss_pred cccchHHHHhhH---HHHHHHHHHHhhhhhcCCchHH----HHHHHHHHHHhhhhHhhhcCccchhhhhhhhhHHHHHHH
Q psy5581 30 YVAEMWNTVSNL---VMMLQALYGIYDVFRNDFEKKF----IIAYTFLFVVGMGSWAFHMTLLYEMQLFDELPMVWGTCF 102 (240)
Q Consensus 30 ~iaEf~NtlSNl---~fl~~~l~g~~~~~~~~~~~~~----~~~~~~l~~vGiGS~lFH~tl~~~~ql~DelPM~~~~~~ 102 (240)
.|-||.-++=+. +.-.-|+.-.++.+|+..+.++ .+-...-+..=+-|..||+.=...++-+|=-.=..+.+.
T Consensus 101 GiQEp~SviFS~lNl~~h~~g~~~~r~~~~~~~~~r~~~l~~I~a~i~mnawiwSsvFH~rD~~lTEklDYf~A~~~vlf 180 (319)
T KOG2970|consen 101 GIQEPFSVIFSFLNLITHYKGLVKFRRPKKPNRPTRYERLWLIYAYIGMNAWIWSSVFHIRDVPLTEKLDYFSAYLTVLF 180 (319)
T ss_pred hccchHHHHHHHHHHHHHHHHHhheecccCCCCcchhccchhhHHHHHHHHHHHHHhhhhcCCchHhhhhHHHHHHHHHH
Confidence 467898765443 3333443222333344333332 122222344457899999999999999997665544444
Q ss_pred hhhHhhc---ccCCC-CCchhHHHHHHHHHHHHH-HhHhhcccc--chh---HHHHHHHHHHHHHHHHHHhhhhchhhhH
Q psy5581 103 SLYLLCD---IKSPK-SLSKPGLVAGLLLSISFT-LIYLYNPLP--VLH---NTAFAILAISSYVLQICMIRQTRCRLCA 172 (240)
Q Consensus 103 ~~~~~~~---~r~~~-~~~~~~~~~l~~~~~~~t-~~~~~~~~p--~~~---~~~y~~~~~~i~~~~~~l~~~~~~~~~~ 172 (240)
-+|..+. ..++. ..+....+ .+ +++..+ +.|.+..+. ..| .++.++++......-.+ .+++.|..++
T Consensus 181 ~ly~a~ir~~~i~~~~~~~~~ita-~f-la~ya~Hi~yls~~~fdYgyNm~~~v~~g~iq~vlw~~~~~-~~~~~~s~~~ 257 (319)
T KOG2970|consen 181 GLYVALIRMLSIQSLPALRGMITA-IF-LAFYANHILYLSFYNFDYGYNMIVCVAIGVIQLVLWLVWSF-KKRNLPSFWR 257 (319)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHH-HH-HHHHHHHHHHHhheecccccceeeehhhHHHHHHHHHHHHH-HhhcCcchhh
Confidence 4443332 11222 22212111 11 111111 333333221 122 35556666665544332 1223343323
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhccCCccccccchhhHHHHHHHHHHHHHHHHH
Q psy5581 173 TLYALSFACYLFGFALWNVDKFYCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGTYLSVLLT 235 (240)
Q Consensus 173 ~~~~~a~~~f~la~~~w~~D~~~C~~l~~~r~~ig~p~~~~l~~H~~WHil~a~~~y~~~~~~ 235 (240)
.....-+..+.+|..++..|-. |..+.+--|++||+.|---.++.--+.
T Consensus 258 i~~~~i~~~~~LA~sLEi~DFp--------------Py~~~iDAHALWHlaTIplt~~~~~Fv 306 (319)
T KOG2970|consen 258 IWPILIVIFFFLAMSLEIFDFP--------------PYAWLIDAHALWHLATIPLTILWYDFV 306 (319)
T ss_pred hhHHHHHHHHHHHHHHHhhcCC--------------chhhhcchHHHHHhhcCccHHHHHHHh
Confidence 3333445566899999999973 444456789999998876666555443
No 11
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=96.75 E-value=0.075 Score=46.39 Aligned_cols=183 Identities=17% Similarity=0.156 Sum_probs=96.8
Q ss_pred ccchHHHHhhHHHHHHHHHHHhh----hhhcCCch---HHHHHHHHHHHHhhhhHhhhcCcc-----chhhhhhhhhHHH
Q psy5581 31 VAEMWNTVSNLVMMLQALYGIYD----VFRNDFEK---KFIIAYTFLFVVGMGSWAFHMTLL-----YEMQLFDELPMVW 98 (240)
Q Consensus 31 iaEf~NtlSNl~fl~~~l~g~~~----~~~~~~~~---~~~~~~~~l~~vGiGS~lFH~tl~-----~~~ql~DelPM~~ 98 (240)
=.|..|++|-+.=.+.++.++.. ...+.... .+.+.-.+++..=.-|+.||..+. .+.|-+|-..|..
T Consensus 19 ~~e~~n~~tHlvGail~i~~l~~l~~~a~~~~~~~~~~~~~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~~I~v 98 (226)
T COG1272 19 HEEIANAITHLIGAILAIVGLVLLLVYALITGSALAVIVFSIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHSGIYV 98 (226)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHhhhhhHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHHHHHH
Confidence 35788999999666555544422 12222211 234456778888889999999885 4778899999877
Q ss_pred HHHHh-hhHhh-cccCCCCCchhHHHHHHHHHHHHH-HhHhhc--ccc-chhHHHHHHHHHHHHHHHHHHhhhhchhhhH
Q psy5581 99 GTCFS-LYLLC-DIKSPKSLSKPGLVAGLLLSISFT-LIYLYN--PLP-VLHNTAFAILAISSYVLQICMIRQTRCRLCA 172 (240)
Q Consensus 99 ~~~~~-~~~~~-~~r~~~~~~~~~~~~l~~~~~~~t-~~~~~~--~~p-~~~~~~y~~~~~~i~~~~~~l~~~~~~~~~~ 172 (240)
++..- .-..+ ..+.. .+..+..+ .-+++.. +..-.. .++ .+--..|..+.-.++....-+.+...+ ..-
T Consensus 99 LIAgSyTP~~l~~l~~~--~~~~~~~i--iW~lal~Gi~~kl~~~~~~r~ls~~~yl~mGw~~v~~~~~l~~~l~~-~~~ 173 (226)
T COG1272 99 LIAGSYTPFLLVGLYGP--LGWILLGL--IWGLALAGILFKLFFKKRFRKLSLVLYLAMGWLGLIVIKPLIAKLGL-IGL 173 (226)
T ss_pred HHHHhhHHHhHHHhccc--hHHHHHHH--HHHHHHHHHhhhhhccCcCceeeehhhHHHHHHHHHHHHHHHHhCch-HHH
Confidence 66552 21111 11111 22222111 1112111 111111 222 222344544332222221112221122 113
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhccCCccccccchhhHHHHHHHHHHHHHHHHH
Q psy5581 173 TLYALSFACYLFGFALWNVDKFYCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGTYLSVLLT 235 (240)
Q Consensus 173 ~~~~~a~~~f~la~~~w~~D~~~C~~l~~~r~~ig~p~~~~l~~H~~WHil~a~~~y~~~~~~ 235 (240)
.++..+.+.|.+|-++-..|. | + ...-|.+||++.-.|+.+....+
T Consensus 174 ~~l~~GGv~YsvG~ifY~~~~---~---~-----------~~~~H~iwH~fVv~ga~~Hf~ai 219 (226)
T COG1272 174 VLLALGGVLYSVGAIFYVLRI---D---R-----------IPYSHAIWHLFVVGGAACHFIAI 219 (226)
T ss_pred HHHHHHhHHheeeeEEEEEee---c---c-----------CCchHHHHHHHHHHHHHHHHHHH
Confidence 556678888888877766664 1 1 13779999999999996665543
No 12
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=94.76 E-value=1.5 Score=38.88 Aligned_cols=185 Identities=16% Similarity=0.135 Sum_probs=90.4
Q ss_pred ccchHHHHhhHHHHHHHHHHHhhhhh----cCCchH-HHHHH-HHHHHHhhhhHhhhcCccchhhhhhhhhHHHHHHHhh
Q psy5581 31 VAEMWNTVSNLVMMLQALYGIYDVFR----NDFEKK-FIIAY-TFLFVVGMGSWAFHMTLLYEMQLFDELPMVWGTCFSL 104 (240)
Q Consensus 31 iaEf~NtlSNl~fl~~~l~g~~~~~~----~~~~~~-~~~~~-~~l~~vGiGS~lFH~tl~~~~ql~DelPM~~~~~~~~ 104 (240)
+-||..++-+..=++.-..|..+-+| .....| ..+.+ ..=+.-=+-|..||.--+-.++=+|--.--.+.+.-+
T Consensus 99 ~qEfFS~~FS~~Nfi~hy~gfh~m~r~i~~e~~~~R~~~l~wv~igmlAwi~SsvFHird~~iTeklDYF~AgltVLfGf 178 (319)
T COG5237 99 MQEFFSALFSFMNFITHYIGFHRMLRKILRETRLGRLYYLQWVYIGMLAWISSSVFHIRDNTITEKLDYFLAGLTVLFGF 178 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccceEEeeHHHHHHHHHHHHhheeeeccchhhhHHHHHhhHHHHHHH
Confidence 45888776655433344444432221 111223 22333 1122334789999999999999888766555555544
Q ss_pred hHhhc----ccCCC--C-CchhHHHHHHHHHHHHH--HhHhhcccc--chh---HHHHHHHHHHHHHHHHHHhhhhch-h
Q psy5581 105 YLLCD----IKSPK--S-LSKPGLVAGLLLSISFT--LIYLYNPLP--VLH---NTAFAILAISSYVLQICMIRQTRC-R 169 (240)
Q Consensus 105 ~~~~~----~r~~~--~-~~~~~~~~l~~~~~~~t--~~~~~~~~p--~~~---~~~y~~~~~~i~~~~~~l~~~~~~-~ 169 (240)
|..+. ..+.+ + .+.... +.+.+.+. +.+.++-+- ..+ +.+.++.+-......-+..+ ++ .
T Consensus 179 y~~lvrm~~~~~~p~~K~~~~~~~---aifia~fa~Hi~rls~i~fdY~YNm~~n~aigv~q~iL~~~~s~~ny--~~~g 253 (319)
T COG5237 179 YMALVRMILIVSPPIEKATRGPLQ---AIFIAFFAYHIHRLSNIEFDYVYNMISNCAIGVTQTILSHLVSFLNY--RKLG 253 (319)
T ss_pred HHHHHHHHHhhcCchHHHHHhHHH---HHHHHHHHHHHHHHhhccceeeehhhhcchHHHHHHHHHHHHHHhhh--Hhhh
Confidence 44332 11111 1 111121 11111111 222222221 111 34444444333322222211 11 1
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhccCCccccccchhhHHHHHHHHHHHHHHHH
Q psy5581 170 L-CATLYALSFACYLFGFALWNVDKFYCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGTYLSVLL 234 (240)
Q Consensus 170 ~-~~~~~~~a~~~f~la~~~w~~D~~~C~~l~~~r~~ig~p~~~~l~~H~~WHil~a~~~y~~~~~ 234 (240)
. -+|....-+..+.+|-.++..|-.- .+.+..-|++||+.|-.....+..+
T Consensus 254 ~~~kr~p~~~v~~~~lA~slElfDf~p--------------ya~lIDaHAlWHL~t~~~t~~ly~F 305 (319)
T COG5237 254 HTFKRIPLFFVFFFFLAGSLELFDFPP--------------YAYLIDAHALWHLITCISTPFLYLF 305 (319)
T ss_pred hhhhhhhHHHHHHHHHhhhhhhhccCc--------------HHHHhhHHHHhHhhhccchHHHHHh
Confidence 0 0344445567777888888888743 3344578999999998887655544
No 13
>KOG4243|consensus
Probab=92.62 E-value=0.035 Score=48.46 Aligned_cols=171 Identities=15% Similarity=0.100 Sum_probs=87.1
Q ss_pred chHHHHhhHHHHHHHHHHHhhhhhcCC---chHHHHH-HHHHHHHhhhhHhhhcC------------ccchhhhhhhhhH
Q psy5581 33 EMWNTVSNLVMMLQALYGIYDVFRNDF---EKKFIIA-YTFLFVVGMGSWAFHMT------------LLYEMQLFDELPM 96 (240)
Q Consensus 33 Ef~NtlSNl~fl~~~l~g~~~~~~~~~---~~~~~~~-~~~l~~vGiGS~lFH~t------------l~~~~ql~DelPM 96 (240)
.-.|++|...-+++++.|.....+... +...... -.++...-.-|+.||.. +++-..+.|+.-|
T Consensus 86 hvAN~~tHai~I~PaIl~~~~l~~~s~~d~q~i~awIYG~~lc~LFt~STvfH~~~~~~~hqn~~r~l~~~lH~cDRa~I 165 (298)
T KOG4243|consen 86 HVANCYTHAIWIVPAILGSALLHRLSDDDWQKITAWIYGMGLCALFTVSTVFHIVSWKKSHQNKLRTLEHCLHMCDRAVI 165 (298)
T ss_pred HHHhhHhhHhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 367999999999999988765443222 2222222 36677777889999974 3334457898765
Q ss_pred HHHHHHhhhHhhcccC-CCCC--chhHHHHHHHHHHHHHHhHhhcccc--chhHHHHHHHHHHHHHHHHHHhhhhchhhh
Q psy5581 97 VWGTCFSLYLLCDIKS-PKSL--SKPGLVAGLLLSISFTLIYLYNPLP--VLHNTAFAILAISSYVLQICMIRQTRCRLC 171 (240)
Q Consensus 97 ~~~~~~~~~~~~~~r~-~~~~--~~~~~~~l~~~~~~~t~~~~~~~~p--~~~~~~y~~~~~~i~~~~~~l~~~~~~~~~ 171 (240)
-.++.+-..-.+..|. +.-. -+.+..+++..|+.-... ..|- .+-...|.++.+.=. ..+..+.. ...
T Consensus 166 Y~FIAaSY~PWLtLr~~g~~~~~m~W~IWlmA~~Gi~Yq~~---fHErYK~lEt~~Ylvmg~gPa-lvv~sm~~-~~G-- 238 (298)
T KOG4243|consen 166 YFFIAASYAPWLTLRELGPLASHMRWFIWLMAAGGIIYQFL---FHERYKVLETFFYLVMGFGPA-LVVTSMNN-TDG-- 238 (298)
T ss_pred hhhhhhcccccccHHhhCcHHHHHHHHHHHHHhcchhhhhh---HHHHHHHHHHHHHHHHhcCce-EEEEEeCC-chh--
Confidence 5444432211222221 1110 012333333333221111 1110 111233322211100 00001111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhccCCccccccchhhHHHHHHHHHH
Q psy5581 172 ATLYALSFACYLFGFALWNVDKFYCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGT 228 (240)
Q Consensus 172 ~~~~~~a~~~f~la~~~w~~D~~~C~~l~~~r~~ig~p~~~~l~~H~~WHil~a~~~ 228 (240)
-.-+..|...+.+|.++--.|..+ +--|+.||++.++|+
T Consensus 239 l~~l~~GG~~Y~lGvvFFK~DG~i------------------pfAHAIWHLFV~l~A 277 (298)
T KOG4243|consen 239 LQELATGGLFYCLGVVFFKSDGII------------------PFAHAIWHLFVALAA 277 (298)
T ss_pred HHHHHhCCEEEEEEEEEEecCCce------------------ehHHHHHHHHHHHHc
Confidence 133456778888888888888755 345999999999998
No 14
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=83.29 E-value=0.094 Score=25.66 Aligned_cols=9 Identities=44% Similarity=1.368 Sum_probs=7.6
Q ss_pred cchhhHHHH
Q psy5581 214 TQLHAWWHC 222 (240)
Q Consensus 214 l~~H~~WHi 222 (240)
+.+|+|||+
T Consensus 5 ~~L~~WWrt 13 (14)
T PF08255_consen 5 FSLHGWWRT 13 (14)
T ss_pred EEEeeEEEc
Confidence 588999995
No 15
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=64.53 E-value=27 Score=28.21 Aligned_cols=60 Identities=22% Similarity=0.433 Sum_probs=36.8
Q ss_pred HHHHhhHHHHHHHHHHHhhhhhc--CCchHHHHH-HHHHHHHhhhhHhhhcCccchhhhhhhhhH
Q psy5581 35 WNTVSNLVMMLQALYGIYDVFRN--DFEKKFIIA-YTFLFVVGMGSWAFHMTLLYEMQLFDELPM 96 (240)
Q Consensus 35 ~NtlSNl~fl~~~l~g~~~~~~~--~~~~~~~~~-~~~l~~vGiGS~lFH~tl~~~~ql~DelPM 96 (240)
.+++.|+.+....++-.+.-.|| ..++.+... ...++.+++.+.+++.... +...|..++
T Consensus 58 ~~~~~~~~~~~~~l~~~~lffkr~~~~P~~~I~~ll~~v~~~~l~~~~~~~~~~--~~~~d~~~i 120 (149)
T PF10754_consen 58 FEVAINIAMWLFTLWLLYLFFKRKRRFPKLYIIWLLISVLFIALDAFAFSYIFP--SPVIDAEAI 120 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccHHHH
Confidence 57788888887776655443333 333334443 3456668999999965554 555665544
No 16
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=36.86 E-value=2e+02 Score=22.90 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=21.2
Q ss_pred HHHHhhHHHHHHHHHHHhhhhhcCCc--hHHHHHHHHHHHHhhhhHh
Q psy5581 35 WNTVSNLVMMLQALYGIYDVFRNDFE--KKFIIAYTFLFVVGMGSWA 79 (240)
Q Consensus 35 ~NtlSNl~fl~~~l~g~~~~~~~~~~--~~~~~~~~~l~~vGiGS~l 79 (240)
+|+..|..-.+.=+.|++..||++.+ ++.......+.++-+.+..
T Consensus 7 l~a~~~~~s~~ll~~g~~~Ir~~~~~~Hr~~Ml~a~~ls~lFlv~Yl 53 (133)
T PF04238_consen 7 LNAVLNAISAVLLLIGWYFIRRGRIKLHRKLMLTAFVLSALFLVSYL 53 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777764433323455554444433 3333444444444444443
No 17
>PRK10905 cell division protein DamX; Validated
Probab=27.05 E-value=43 Score=30.83 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhHhh
Q psy5581 65 IAYTFLFVVGMGSWAF 80 (240)
Q Consensus 65 ~~~~~l~~vGiGS~lF 80 (240)
++.++|.+|||||++=
T Consensus 6 ilVLlLLIigIgSALk 21 (328)
T PRK10905 6 ILVLLLLIIGIGSALK 21 (328)
T ss_pred HHHHHHHHHHHhHhhc
Confidence 4667889999999974
No 18
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=26.98 E-value=3.9e+02 Score=22.57 Aligned_cols=17 Identities=24% Similarity=0.067 Sum_probs=12.8
Q ss_pred hhhhhhhhHHHHHHHhh
Q psy5581 88 MQLFDELPMVWGTCFSL 104 (240)
Q Consensus 88 ~ql~DelPM~~~~~~~~ 104 (240)
-|++|-+|++.++..+-
T Consensus 2 K~~ld~~Pli~FF~~yk 18 (180)
T COG2917 2 KQLLDFGPLILFFAAYK 18 (180)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 37888888888777764
No 19
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=26.06 E-value=3.4e+02 Score=21.62 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy5581 172 ATLYALSFACYLFGFALWNVD 192 (240)
Q Consensus 172 ~~~~~~a~~~f~la~~~w~~D 192 (240)
.+....|...+.++...-.+.
T Consensus 152 a~~~~~~~~~~~~~~~~~~l~ 172 (205)
T PF07695_consen 152 ARYFLIGWLLFLLSSLIDILR 172 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777664433
No 20
>PF03203 MerC: MerC mercury resistance protein
Probab=25.92 E-value=3e+02 Score=20.96 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHHhhhHhh
Q psy5581 91 FDELPMVWGTCFSLYLLC 108 (240)
Q Consensus 91 ~DelPM~~~~~~~~~~~~ 108 (240)
+|.+.|.......++++.
T Consensus 1 ~D~~gi~~S~LC~iHCl~ 18 (116)
T PF03203_consen 1 LDRLGIGASLLCAIHCLA 18 (116)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 588998888888887764
No 21
>PLN02680 carbon-monoxide oxygenase
Probab=24.91 E-value=2.7e+02 Score=24.42 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy5581 219 WWHCFAGHGTYLSVLLTVLSG 239 (240)
Q Consensus 219 ~WHil~a~~~y~~~~~~~~~~ 239 (240)
-||.+.|...|.+......+|
T Consensus 154 p~H~~~G~~if~LaiaT~~lG 174 (232)
T PLN02680 154 PWHVFFGIYIYALAVATATTG 174 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999887766543
No 22
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=23.45 E-value=4.2e+02 Score=21.72 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=38.0
Q ss_pred hHHHHhhHHHHHHHHHHHhhhhhcCC---c-------hHHHHHHHHHHH--HhhhhHhhhcCccchhhhhhhhhHHHHHH
Q psy5581 34 MWNTVSNLVMMLQALYGIYDVFRNDF---E-------KKFIIAYTFLFV--VGMGSWAFHMTLLYEMQLFDELPMVWGTC 101 (240)
Q Consensus 34 f~NtlSNl~fl~~~l~g~~~~~~~~~---~-------~~~~~~~~~l~~--vGiGS~lFH~tl~~~~ql~DelPM~~~~~ 101 (240)
..+...|+.|++..++|+++-.|++. + .+-........+ .++-....+..-+.....+|-+.......
T Consensus 46 y~~~~lq~~~~~~~i~G~~~W~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Da~~~~~siv 125 (181)
T PF04973_consen 46 YGDMLLQLFYFIMSIYGWYQWKKGRDENDEVKVRRLSKKQWILLLIGILIGTAIFGFILKFLTDSPFPWLDALTTVLSIV 125 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCcccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 45678899999888888876553221 1 122222222222 22222333322234556889888777666
Q ss_pred Hh
Q psy5581 102 FS 103 (240)
Q Consensus 102 ~~ 103 (240)
+.
T Consensus 126 a~ 127 (181)
T PF04973_consen 126 AQ 127 (181)
T ss_pred HH
Confidence 65
No 23
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=22.74 E-value=3.5e+02 Score=20.57 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=12.2
Q ss_pred hhhhhhhHHHHHHHhhhHhhc
Q psy5581 89 QLFDELPMVWGTCFSLYLLCD 109 (240)
Q Consensus 89 ql~DelPM~~~~~~~~~~~~~ 109 (240)
+...|.++..+....++....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~ 91 (159)
T PF13231_consen 71 SARPDMLLLFFFLLALYAFYR 91 (159)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 444466666666666566665
No 24
>KOG2546|consensus
Probab=22.28 E-value=29 Score=33.15 Aligned_cols=11 Identities=55% Similarity=1.304 Sum_probs=9.1
Q ss_pred ccccccccccc
Q psy5581 18 VDWCEKNYVES 28 (240)
Q Consensus 18 ~d~CE~~y~~s 28 (240)
.||||+||.-+
T Consensus 32 adycednYiQs 42 (483)
T KOG2546|consen 32 ADYCEDNYIQS 42 (483)
T ss_pred hhhhhhchhcc
Confidence 58999999764
No 25
>PRK11901 hypothetical protein; Reviewed
Probab=21.83 E-value=58 Score=30.04 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhhhHhh
Q psy5581 65 IAYTFLFVVGMGSWAF 80 (240)
Q Consensus 65 ~~~~~l~~vGiGS~lF 80 (240)
++.++|.+|||||++=
T Consensus 44 ilVLlLLIi~IgSALk 59 (327)
T PRK11901 44 ILVLLLLIIAIGSALK 59 (327)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 4678899999999974
No 26
>PRK13841 conjugal transfer protein TrbL; Provisional
Probab=21.74 E-value=1.3e+02 Score=28.51 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhhHhhhcCccchhhhhhhh----hHHHHHHHhh
Q psy5581 66 AYTFLFVVGMGSWAFHMTLLYEMQLFDEL----PMVWGTCFSL 104 (240)
Q Consensus 66 ~~~~l~~vGiGS~lFH~tl~~~~ql~Del----PM~~~~~~~~ 104 (240)
+....++|||||..|-...+....-.||+ -|+...++++
T Consensus 219 LmvL~lIVGIG~~~f~~~~~~~~~~~~e~~~~l~il~~Slvll 261 (391)
T PRK13841 219 LMALVMIAKIGSDVLLGLAEAPTATSDQFITTLAIAGISVVVF 261 (391)
T ss_pred HHHHHHHHHHhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 56778889999998866555432234555 5555555554
No 27
>PF14325 DUF4383: Domain of unknown function (DUF4383)
Probab=20.89 E-value=1.6e+02 Score=23.15 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=29.8
Q ss_pred hHHHHhhHHHHHHHHHHHhhhhhcCCchHH----HHHHHHHHHHhhhhH
Q psy5581 34 MWNTVSNLVMMLQALYGIYDVFRNDFEKKF----IIAYTFLFVVGMGSW 78 (240)
Q Consensus 34 f~NtlSNl~fl~~~l~g~~~~~~~~~~~~~----~~~~~~l~~vGiGS~ 78 (240)
..|.+-|+.-++.|+.|+...++.+....+ -+.|..+.+.|+...
T Consensus 45 ~vn~lhn~vHl~~Gv~gl~aa~~~~~Ar~~~~~~g~~y~~l~i~Gl~~~ 93 (125)
T PF14325_consen 45 AVNPLHNIVHLLFGVAGLAAARSPRAARAFLRLFGVVYLALGIYGLFPG 93 (125)
T ss_pred eccHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 589999999999999998776553333322 235555666555543
No 28
>PHA00159 endonuclease I
Probab=20.25 E-value=32 Score=27.89 Aligned_cols=16 Identities=50% Similarity=0.939 Sum_probs=13.5
Q ss_pred CCcccccccccccccc
Q psy5581 9 GYWGERTSTVDWCEKN 24 (240)
Q Consensus 9 ~~wg~~ts~~d~CE~~ 24 (240)
-|=|.+||..||||.+
T Consensus 101 lyKgSkTtYa~Wc~kh 116 (148)
T PHA00159 101 LYKGSPTSYAEWCEKH 116 (148)
T ss_pred hhcCCCCcHHHHHHHc
Confidence 3558899999999985
Done!