Query psy5581
Match_columns 240
No_of_seqs 108 out of 429
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 21:09:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bkd_A Transmembrane domain of 40.7 34 0.0012 18.6 3.1 22 174-195 5-26 (26)
2 2kih_A Matrix protein 2; S31N, 33.0 57 0.0019 19.7 3.5 26 173-198 8-33 (43)
3 2ljb_A M2 protein, BM2 protein 27.4 67 0.0023 18.7 3.1 24 173-196 8-31 (35)
4 3lbw_A M2 protein; proton chan 24.9 85 0.0029 16.6 3.2 19 176-194 4-22 (23)
5 3p8c_F ABL interactor 2; actin 20.9 13 0.00045 29.6 -1.1 10 18-27 31-40 (159)
6 1m0d_A Endonuclease, endodeoxy 18.2 20 0.00069 27.8 -0.6 15 10-24 91-105 (138)
7 2lx0_A Membrane fusion protein 11.6 1.7E+02 0.0057 16.3 2.2 14 217-230 3-16 (32)
8 3rf3_C Invasin IPAA, 70 kDa an 10.9 97 0.0033 16.9 1.0 9 34-42 16-24 (29)
9 2qdr_A Uncharacterized protein 10.6 52 0.0018 28.5 -0.2 24 8-31 226-249 (303)
10 2hac_A T-cell surface glycopro 10.3 2E+02 0.0068 16.6 2.3 16 122-137 10-25 (33)
No 1
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=40.68 E-value=34 Score=18.60 Aligned_cols=22 Identities=18% Similarity=0.390 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHh
Q psy5581 174 LYALSFACYLFGFALWNVDKFY 195 (240)
Q Consensus 174 ~~~~a~~~f~la~~~w~~D~~~ 195 (240)
++..+-++-.+-+++|.+|+.|
T Consensus 5 lv~aa~iiGilHLiLwIldrlf 26 (26)
T 3bkd_A 5 LVVAASIMGILHLILWILDRLX 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHHHHHHHHhhcC
Confidence 4556666777888999999854
No 2
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=32.98 E-value=57 Score=19.75 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy5581 173 TLYALSFACYLFGFALWNVDKFYCDN 198 (240)
Q Consensus 173 ~~~~~a~~~f~la~~~w~~D~~~C~~ 198 (240)
.++..|.++-.+-+++|.+|+.|..-
T Consensus 8 plv~aa~iiGIlHLiLwildRlffkc 33 (43)
T 2kih_A 8 PLVVAANIIGILHLILWILDRLFFKS 33 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888899999999977544
No 3
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=27.38 E-value=67 Score=18.73 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhh
Q psy5581 173 TLYALSFACYLFGFALWNVDKFYC 196 (240)
Q Consensus 173 ~~~~~a~~~f~la~~~w~~D~~~C 196 (240)
.++..|.++-.+-+.+|.+|+.+.
T Consensus 8 plviaA~IigiLHlilWildrLff 31 (35)
T 2ljb_A 8 PLVVAASIIGILHFIAWTIGHLNQ 31 (35)
T ss_dssp THHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHh
Confidence 456677778888999999999773
No 4
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=24.91 E-value=85 Score=16.56 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q psy5581 176 ALSFACYLFGFALWNVDKF 194 (240)
Q Consensus 176 ~~a~~~f~la~~~w~~D~~ 194 (240)
..|.++-.+-+++|.+|+.
T Consensus 4 ~aa~iigIlHLiLwIlDrL 22 (23)
T 3lbw_A 4 VAASIIAILHLILWILDRL 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhhc
Confidence 4455666777889999973
No 5
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=20.87 E-value=13 Score=29.56 Aligned_cols=10 Identities=50% Similarity=1.371 Sum_probs=7.8
Q ss_pred cccccccccc
Q psy5581 18 VDWCEKNYVE 27 (240)
Q Consensus 18 ~d~CE~~y~~ 27 (240)
+||||.||..
T Consensus 31 AdYCE~nY~q 40 (159)
T 3p8c_F 31 ADYCENNYIQ 40 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5899999843
No 6
>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A
Probab=18.21 E-value=20 Score=27.82 Aligned_cols=15 Identities=47% Similarity=0.789 Sum_probs=12.6
Q ss_pred Ccccccccccccccc
Q psy5581 10 YWGERTSTVDWCEKN 24 (240)
Q Consensus 10 ~wg~~ts~~d~CE~~ 24 (240)
+=|..|+..+|||.+
T Consensus 91 ~K~s~ttya~Wc~k~ 105 (138)
T 1m0d_A 91 YKGSPTSYGEFCEKH 105 (138)
T ss_dssp STTCSCBHHHHHHHH
T ss_pred eccCCCcHHHHHHHc
Confidence 447789999999985
No 7
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=11.57 E-value=1.7e+02 Score=16.28 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHH
Q psy5581 217 HAWWHCFAGHGTYL 230 (240)
Q Consensus 217 H~~WHil~a~~~y~ 230 (240)
|..|.+..|+.+.+
T Consensus 3 htiweviaglvall 16 (32)
T 2lx0_A 3 HTIWEVIAGLVALL 16 (32)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 88999999887744
No 8
>3rf3_C Invasin IPAA, 70 kDa antigen; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Shigella flexneri}
Probab=10.89 E-value=97 Score=16.89 Aligned_cols=9 Identities=44% Similarity=0.678 Sum_probs=6.8
Q ss_pred hHHHHhhHH
Q psy5581 34 MWNTVSNLV 42 (240)
Q Consensus 34 f~NtlSNl~ 42 (240)
--|.+||+.
T Consensus 16 vtnslsnli 24 (29)
T 3rf3_C 16 VTNSLSNLI 24 (29)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 458899985
No 9
>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}
Probab=10.56 E-value=52 Score=28.48 Aligned_cols=24 Identities=13% Similarity=0.172 Sum_probs=20.1
Q ss_pred CCCccccccccccccccccccccc
Q psy5581 8 AGYWGERTSTVDWCEKNYVESYYV 31 (240)
Q Consensus 8 ~~~wg~~ts~~d~CE~~y~~s~~i 31 (240)
++++.+....-|||||.|..+++.
T Consensus 226 Pg~dt~~v~iHdy~EEvY~LeG~~ 249 (303)
T 2qdr_A 226 PHFDNKYQMIQPYNEEGYCLTGYC 249 (303)
T ss_dssp SSEECCSEEEECSCEEEEEEEEEE
T ss_pred CCCCCCCceeeccceeEEEEeeec
Confidence 467777788889999999998876
No 10
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=10.33 E-value=2e+02 Score=16.63 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHhh
Q psy5581 122 VAGLLLSISFTLIYLY 137 (240)
Q Consensus 122 ~~l~~~~~~~t~~~~~ 137 (240)
.+++++++.+|+.|.+
T Consensus 10 giL~iYgii~T~Ly~R 25 (33)
T 2hac_A 10 GILFIYGVILTALFLR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4667788888887764
Done!