Query psy5581
Match_columns 240
No_of_seqs 108 out of 429
Neff 6.9
Searched_HMMs 13730
Date Fri Aug 16 21:09:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5581.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5581hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dj7a1 g.39.1.3 (A:44-74) Act 57.6 0.71 5.2E-05 25.3 -0.6 9 19-27 20-28 (31)
2 d1uwwa_ b.18.1.23 (A:) Endoglu 14.4 15 0.0011 27.8 -0.3 22 2-23 103-126 (184)
3 d1nekd_ f.21.2.2 (D:) Succinat 14.0 40 0.0029 22.8 2.0 23 27-49 46-68 (113)
4 d1g47a2 g.39.1.3 (A:36-70) Pin 13.9 13 0.00091 20.6 -0.7 7 20-26 23-29 (35)
5 d2bi7a2 d.16.1.7 (A:248-316) U 11.5 33 0.0024 21.7 0.7 17 13-29 17-33 (69)
6 d3b2ua2 g.3.9.1 (A:481-502) EG 11.3 53 0.0039 16.3 1.4 14 3-16 4-17 (26)
7 d1i8ta2 d.16.1.7 (A:245-313) U 9.5 45 0.0033 20.9 0.8 17 13-29 18-34 (69)
8 d1m0da_ c.52.1.17 (A:) Endonuc 7.1 35 0.0025 24.3 -0.6 13 12-24 88-100 (129)
9 d1rutx4 g.39.1.3 (X:114-146) L 7.0 53 0.0039 17.4 0.3 12 12-24 16-27 (33)
10 d1gg2g_ a.137.3.1 (G:) Transdu 6.9 39 0.0029 20.2 -0.4 15 17-31 30-44 (54)
No 1
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.59 E-value=0.71 Score=25.30 Aligned_cols=9 Identities=33% Similarity=0.984 Sum_probs=7.2
Q ss_pred ccccccccc
Q psy5581 19 DWCEKNYVE 27 (240)
Q Consensus 19 d~CE~~y~~ 27 (240)
-|||+||..
T Consensus 20 PyCe~DY~~ 28 (31)
T d2dj7a1 20 PYCESDYHA 28 (31)
T ss_dssp EECTTHHHH
T ss_pred cccHHHHHH
Confidence 499999963
No 2
>d1uwwa_ b.18.1.23 (A:) Endoglucanase (alkaline cellulase) {Bacillus sp. 1139 [TaxId: 1411]}
Probab=14.42 E-value=15 Score=27.83 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=16.0
Q ss_pred CCCCCCCCCccccccc--cccccc
Q psy5581 2 APLVDQAGYWGERTST--VDWCEK 23 (240)
Q Consensus 2 ~~~~~~~~~wg~~ts~--~d~CE~ 23 (240)
+|++|.+|||..++-+ ||--|.
T Consensus 103 i~q~p~~G~Wan~~~~~~I~l~~l 126 (184)
T d1uwwa_ 103 VFQPPTNGYWVQAPKTYTINFDEL 126 (184)
T ss_dssp EECCGGGTTCEECSSCEEEEGGGG
T ss_pred eecCCccccccCCCcceEecCCch
Confidence 4788899999888766 444543
No 3
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=14.01 E-value=40 Score=22.81 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=18.2
Q ss_pred ccccccchHHHHhhHHHHHHHHH
Q psy5581 27 ESYYVAEMWNTVSNLVMMLQALY 49 (240)
Q Consensus 27 ~s~~iaEf~NtlSNl~fl~~~l~ 49 (240)
...+..+|+|.+-...+++...+
T Consensus 46 ~~~~~~~~~~~il~~l~l~~~~~ 68 (113)
T d1nekd_ 46 WIGFFASAFTKVFTLLALFSILI 68 (113)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHH
Confidence 45778899999999988876654
No 4
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.91 E-value=13 Score=20.56 Aligned_cols=7 Identities=29% Similarity=1.217 Sum_probs=5.9
Q ss_pred ccccccc
Q psy5581 20 WCEKNYV 26 (240)
Q Consensus 20 ~CE~~y~ 26 (240)
|||.||.
T Consensus 23 YCe~~Y~ 29 (35)
T d1g47a2 23 YCEHDFQ 29 (35)
T ss_dssp ECHHHHH
T ss_pred cChHhHH
Confidence 9999884
No 5
>d2bi7a2 d.16.1.7 (A:248-316) UDP-galactopyranose mutase {Klebsiella pneumoniae [TaxId: 573]}
Probab=11.54 E-value=33 Score=21.68 Aligned_cols=17 Identities=6% Similarity=0.305 Sum_probs=12.7
Q ss_pred ccccccccccccccccc
Q psy5581 13 ERTSTVDWCEKNYVESY 29 (240)
Q Consensus 13 ~~ts~~d~CE~~y~~s~ 29 (240)
+..+.||||+.|+-.|+
T Consensus 17 Q~~avvNyp~~~~~yTR 33 (69)
T d2bi7a2 17 QGCAVMNYCSVDVPYTR 33 (69)
T ss_dssp SSSSEEEECSTTSSSSE
T ss_pred ccccEEeCCCCCCCcEE
Confidence 67899999987754444
No 6
>d3b2ua2 g.3.9.1 (A:481-502) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.29 E-value=53 Score=16.35 Aligned_cols=14 Identities=29% Similarity=0.745 Sum_probs=10.5
Q ss_pred CCCCCCCCcccccc
Q psy5581 3 PLVDQAGYWGERTS 16 (240)
Q Consensus 3 ~~~~~~~~wg~~ts 16 (240)
|.-.++|-|||..-
T Consensus 4 plcssegcwgpepr 17 (26)
T d3b2ua2 4 ALCSPEGCWGPEPR 17 (26)
T ss_dssp TTCCTTCBSSSSGG
T ss_pred cccCcCcccCCCCC
Confidence 55668999999654
No 7
>d1i8ta2 d.16.1.7 (A:245-313) UDP-galactopyranose mutase {Escherichia coli [TaxId: 562]}
Probab=9.51 E-value=45 Score=20.93 Aligned_cols=17 Identities=6% Similarity=0.216 Sum_probs=11.9
Q ss_pred ccccccccccccccccc
Q psy5581 13 ERTSTVDWCEKNYVESY 29 (240)
Q Consensus 13 ~~ts~~d~CE~~y~~s~ 29 (240)
+..+.||||+.|+-.|+
T Consensus 18 Q~~aviNy~~~~~~yTR 34 (69)
T d1i8ta2 18 QGNAVINFTDANVPYTR 34 (69)
T ss_dssp SSSSEEEECCTTSSCSE
T ss_pred cCccEEeCCCCCCCeeE
Confidence 45788999987654443
No 8
>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase) {Bacteriophage T7 [TaxId: 10760]}
Probab=7.13 E-value=35 Score=24.30 Aligned_cols=13 Identities=46% Similarity=0.800 Sum_probs=10.8
Q ss_pred ccccccccccccc
Q psy5581 12 GERTSTVDWCEKN 24 (240)
Q Consensus 12 g~~ts~~d~CE~~ 24 (240)
|.-|...+|||++
T Consensus 88 ~sktTYa~WCek~ 100 (129)
T d1m0da_ 88 GSPTSYGEFCEKH 100 (129)
T ss_dssp TCSCBHHHHHHHH
T ss_pred CCcCcHHHHHHHc
Confidence 6678888999985
No 9
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.97 E-value=53 Score=17.40 Aligned_cols=12 Identities=17% Similarity=0.534 Sum_probs=8.0
Q ss_pred ccccccccccccc
Q psy5581 12 GERTSTVDWCEKN 24 (240)
Q Consensus 12 g~~ts~~d~CE~~ 24 (240)
.....++ |||.|
T Consensus 16 HyvNG~l-fCE~D 27 (33)
T d1rutx4 16 HYINGSL-FCEHD 27 (33)
T ss_dssp EEETTEE-EEGGG
T ss_pred EEecCEE-EEecC
Confidence 3445555 99996
No 10
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.90 E-value=39 Score=20.20 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=9.3
Q ss_pred ccccccccccccccc
Q psy5581 17 TVDWCEKNYVESYYV 31 (240)
Q Consensus 17 ~~d~CE~~y~~s~~i 31 (240)
-++|||++-...+++
T Consensus 30 l~~y~e~~~~~Dpll 44 (54)
T d1gg2g_ 30 LMAYCEAHAKEDPLL 44 (54)
T ss_dssp HHHHHHHHGGGCTTT
T ss_pred HHHHHHhcCcCCCCc
Confidence 367999764444443
Done!