RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5581
         (240 letters)



>gnl|CDD|218789 pfam05875, Ceramidase, Ceramidase.  This family consists of several
           ceramidases. Ceramidases are enzymes involved in
           regulating cellular levels of ceramides, sphingoid
           bases, and their phosphates, EC:3.5.1.23.
          Length = 264

 Score =  212 bits (542), Expect = 5e-69
 Identities = 92/233 (39%), Positives = 125/233 (53%), Gaps = 7/233 (3%)

Query: 9   GYWGERTSTVDWCEKNYVESYYVAEMWNTVSNLVMMLQALYGIYDVFRNDFEKKFIIAYT 68
           GYWG  TST+DWCE+NYV S Y+AE  NT+SNL+ +L  LYGIY   RN  EK+FI+ Y 
Sbjct: 2   GYWGPPTSTIDWCEENYVISPYIAEFVNTLSNLIFILLGLYGIYLARRNKLEKRFILIYL 61

Query: 69  FLFVVGMGSWAFHMTLLYEMQLFDELPMVWGTCFSLYLLCDIKSPKSLSKPGLVAGLLLS 128
            L +VG+GSW FHMTL Y  QL DELPM++ TC  LY     +         ++A LL  
Sbjct: 62  GLILVGLGSWLFHMTLKYHGQLLDELPMIYATCIPLYSWFPRRKFFFKRDRTVLAILLFL 121

Query: 129 IS--FTLIYLYNPLPVLHNTAFAILAISSYVLQICMIRQTRCRLCA-----TLYALSFAC 181
           ++   T++Y     PV+H  AF +L I   +  I ++++      A      L  L  A 
Sbjct: 122 LAAIVTVLYFILKNPVIHQVAFGLLTIPVVLRSIYLMKRYVRDSVARKNLWRLMKLGVAL 181

Query: 182 YLFGFALWNVDKFYCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGTYLSVLL 234
           +L GF  WN+D+ +C      R           +LH WWH   G G Y  ++ 
Sbjct: 182 FLLGFFCWNLDRHFCSFWRRIRRPYGLPWGVLLELHGWWHILTGLGAYYYIVF 234


>gnl|CDD|180679 PRK06754, mtnB, methylthioribulose-1-phosphate dehydratase;
           Reviewed.
          Length = 208

 Score = 27.7 bits (62), Expect = 4.8
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 49  YGIYDVFRNDFE-KKFIIAYTFLF 71
           +GI    R+ FE KK + AY FLF
Sbjct: 170 HGITVWGRDAFEAKKHLEAYEFLF 193


>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional.
          Length = 461

 Score = 27.7 bits (62), Expect = 6.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 182 YLFGFALWNVDKFYCDNLTSFRESIPGWISPTTQLHAWWHCFAGHGTYLSVLL 234
           Y+  FA       YC N+   R  +   I+   +  A++H + GHGT  S+ L
Sbjct: 52  YIDAFA-----GLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASITL 99


>gnl|CDD|202815 pfam03932, CutC, CutC family.  Copper transport in Escherichia coli
           is mediated by the products of at least six genes, cutA,
           cutB, cutC, cutD, cutE, and cutF. A mutation in one or
           more of these genes results in an increased copper
           sensitivity. Members of this family are between 200 and
           300 amino acids in length are found in both eukaryotes
           and bacteria.
          Length = 202

 Score = 27.3 bits (61), Expect = 6.7
 Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 7/50 (14%)

Query: 106 LLCDIKSPKSLSKPGLVAGLL-------LSISFTLIYLYNPLPVLHNTAF 148
           +L DI     L  PG+V G L             LI     L V  + AF
Sbjct: 74  MLEDILKAVELGAPGVVLGALTADGEIDTKRMEKLIEAAGGLGVTFHRAF 123


>gnl|CDD|107356 cd06361, PBP1_GPC6A_like, Ligand-binding domain of the promiscuous
           L-alpha-amino acid receptor GPRC6A which is a
           broad-spectrum amino acid-sensing receptor.  This family
           includes the ligand-binding domain of the promiscuous
           L-alpha-amino acid receptor GPRC6A which is a
           broad-spectrum amino acid-sensing receptor, and its fish
           homolog, the 5.24 chemoreceptor. GPRC6A is a member of
           the family C of G-protein-coupled receptors that
           transduce extracellular signals into G-protein
           activation and ultimately into cellular responses.
          Length = 403

 Score = 27.1 bits (60), Expect = 8.0
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 64  IIAYTFLFVVGMGSWAFHMTLLYEMQLFDELPMVWGTCFSLYLLCDIKSPKSLSKPGLVA 123
           II    + V+ + +  FH+ LL+   +   +  VW    +      I +  ++ K G V 
Sbjct: 229 IIEENKVNVIVVFARQFHVFLLFNKAIERNINKVWIASDNWSTAKKILTDPNVKKIGKVV 288

Query: 124 GLLL---SISFTLIYLYNPLPVLHNTAFAILAISSYVLQICMIRQ 165
           G      +IS    +L N L  +H+   A+ A++  +  +C  RQ
Sbjct: 289 GFTFKSGNISSFHQFLKNLL--IHSIQLAVFALAHAIRDLCQERQ 331


>gnl|CDD|219117 pfam06638, Strabismus, Strabismus protein.  This family consists of
           several strabismus (STB) or Van Gogh-like (VANGL)
           proteins 1 and 2. The exact function of this family is
           unknown. It is thought, however that STB1 gene and STB2
           may be potent tumour suppressor gene candidates.
          Length = 507

 Score = 27.4 bits (61), Expect = 8.9
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 21/69 (30%)

Query: 124 GLLLSISFTLIYLYNPLPVLHNTAFAILAISSYVLQICMIRQTRC---RLCATLYALSFA 180
           GLL+S++F L+               IL I+S+ L    +R  R    R+      L   
Sbjct: 134 GLLISLAFKLL---------------ILLIASWAL---FLRPPRADMPRIFVFRALLLVL 175

Query: 181 CYLFGFALW 189
            +LF F+ W
Sbjct: 176 VFLFLFSYW 184


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.329    0.141    0.474 

Gapped
Lambda     K      H
   0.267   0.0759    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,187,096
Number of extensions: 1134113
Number of successful extensions: 1517
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1510
Number of HSP's successfully gapped: 59
Length of query: 240
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 146
Effective length of database: 6,768,326
Effective search space: 988175596
Effective search space used: 988175596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.7 bits)