RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5581
         (240 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 36/227 (15%), Positives = 59/227 (25%), Gaps = 97/227 (42%)

Query: 25   YVESYYVAEMWNTVSNLVMMLQALYG--IYDVFRNDFEKKFIIAYTFLFVVGMGSWAF-- 80
            Y  S    ++WN   N     +  YG  I D+  N+         T  F  G        
Sbjct: 1636 YKTSKAAQDVWNRADN---HFKDTYGFSILDIVINNPVNL-----TIHFG-GEKGKRIRE 1686

Query: 81   -HMTLLYEMQLFDELPMVWGTCFSLYLLCDIKSPKSLSKPGLVAGLLLSISFTLIYLYNP 139
             +  +++E        +V G   +  +  +I    +            S +F      + 
Sbjct: 1687 NYSAMIFET-------IVDGKLKTEKIFKEINEHST------------SYTF-----RSE 1722

Query: 140  LPVLHNTAF---AILAISSYVLQICMIRQTRCRLCATLYALSFACYLFGFALWNVDKFYC 196
              +L  T F   A+  +                      A         F          
Sbjct: 1723 KGLLSATQFTQPALTLME--------------------KAA--------FEDL------- 1747

Query: 197  DNLTSFRESIPGWISPTTQLHAWWHCFAGH--GTYLSVLLT---VLS 238
                  +    G I            FAGH  G Y + L +   V+S
Sbjct: 1748 ------KSK--GLIPADA-------TFAGHSLGEY-AALASLADVMS 1778



 Score = 28.1 bits (62), Expect = 3.5
 Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 31/98 (31%)

Query: 45  LQALYGIYDVFRNDFEKKFIIAYTFLFVVGMGSWAFHMTLLYEMQLFDELPMVWGTCFSL 104
           L+ LY  Y V   D      I ++                    +   EL         +
Sbjct: 173 LRDLYQTYHVLVGDL-----IKFSA-------------------ETLSELIRTTLDAEKV 208

Query: 105 YLL-CDIKSPKSLSKPGLVAGL--LLS--ISFTLIYLY 137
           +    +I     L  P        LLS  IS  LI + 
Sbjct: 209 FTQGLNILE--WLENPSNTPDKDYLLSIPISCPLIGVI 244


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.5 bits (73), Expect = 0.13
 Identities = 22/170 (12%), Positives = 49/170 (28%), Gaps = 43/170 (25%)

Query: 10  YWGERTSTVD-----------WCEKNYVESYYV-----AEMWNTVSNLVMMLQALYGIYD 53
            W +   +               EK   ES         E+   + N   + +++   Y+
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 54  VFR----NDFEKKFIIAYTFLFVVGMGSWAFHMTLLYEMQLFDELPMVWGTCFSLYLLCD 109
           + +    +D    ++  Y +  +        H+  +   +      M       ++L  D
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHI------GHHLKNIEHPERMTLFRM-------VFL--D 499

Query: 110 --------IKSPKSLSKPGLVAGLLLSISFTLIYLYNPLPVLHNTAFAIL 151
                        + +  G +   L  + F   Y+ +  P       AIL
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549



 Score = 29.4 bits (65), Expect = 1.4
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 31/119 (26%)

Query: 22  EKNYVESYYVAEMWNTVSNLVMMLQALYGIYDVFRNDFEKKFIIA------YTFLFVVGM 75
            + Y+E      ++N           ++  Y+V R     K   A         + + G+
Sbjct: 109 TRMYIE--QRDRLYNDNQ--------VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 76  G----SWAFHMTLL-YEMQLFDELPMVW---GTCFS-------LYLLCDIKSPKSLSKP 119
                +W      L Y++Q   +  + W     C S       L  L     P   S+ 
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217


>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon,
          hyperthermophIle, PGI family; 1.16A {Pyrobaculum
          aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
          Length = 302

 Score = 26.4 bits (57), Expect = 8.2
 Identities = 8/47 (17%), Positives = 17/47 (36%)

Query: 31 VAEMWNTVSNLVMMLQALYGIYDVFRNDFEKKFIIAYTFLFVVGMGS 77
          ++++     N    +         +  + E   I A   L++ GMG 
Sbjct: 1  MSQLLQDYLNWENYILRRVDFPTSYVVEGEVVRIEAMPRLYISGMGG 47


>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A
           {Geobacillus stearothermophilus} PDB: 3ayg_A*
          Length = 800

 Score = 26.5 bits (58), Expect = 8.9
 Identities = 9/54 (16%), Positives = 18/54 (33%)

Query: 31  VAEMWNTVSNLVMMLQALYGIYDVFRNDFEKKFIIAYTFLFVVGMGSWAFHMTL 84
           V  +   +       + +      F       F+I+     +VG G + F + L
Sbjct: 582 VIPLTLLILEAYEQYKMMRDGGANFPYKATFWFLISTAIWNLVGAGVFGFLINL 635


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.141    0.474 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,693,999
Number of extensions: 203939
Number of successful extensions: 506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 501
Number of HSP's successfully gapped: 16
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.5 bits)