RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5581
         (240 letters)



>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein
           HI0607 {Haemophilus influenzae [TaxId: 727]}
          Length = 102

 Score = 25.3 bits (55), Expect = 3.5
 Identities = 7/60 (11%), Positives = 13/60 (21%), Gaps = 2/60 (3%)

Query: 141 PVLHNTAFAILAISSYVLQICMIRQTRCRLCATLYALSFACYLFGFALWNVDKFYCDNLT 200
              HN  +  L ++          Q        + AL                 + D + 
Sbjct: 21  TTFHNYLYDKLGLNFIYKAFTT--QDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIH 78


>d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase
           ProC {Streptococcus pyogenes [TaxId: 1314]}
          Length = 104

 Score = 24.6 bits (53), Expect = 5.8
 Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 2/54 (3%)

Query: 65  IAYTFLFVVGMGSWAFHMTLLYEMQLFDELPMVWGTCFSLYLLCDIKSPKSLSK 118
            AY +LF+  +        +     L      V  +     L    +SP     
Sbjct: 14  PAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASAS--NLKTSSQSPHDFID 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.141    0.474 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 946,813
Number of extensions: 42299
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 5
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)