Query psy5584
Match_columns 2014
No_of_seqs 1390 out of 7043
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 21:15:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2408|consensus 100.0 2E-105 4E-110 1029.6 32.3 533 337-975 149-713 (719)
2 PF03098 An_peroxidase: Animal 100.0 5E-105 1E-109 1029.5 17.4 506 339-944 1-530 (530)
3 PLN02283 alpha-dioxygenase 100.0 1E-91 2.2E-96 891.8 28.9 474 337-933 83-599 (633)
4 KOG0039|consensus 100.0 3.3E-72 7.1E-77 728.8 41.3 598 1386-2013 2-646 (646)
5 PLN02631 ferric-chelate reduct 100.0 3.1E-50 6.7E-55 516.4 42.3 307 1580-1921 181-493 (699)
6 PLN02844 oxidoreductase/ferric 100.0 2.7E-49 5.9E-54 510.5 46.2 407 1580-2014 184-721 (722)
7 PLN02292 ferric-chelate reduct 100.0 1.2E-49 2.6E-54 512.4 42.3 353 1538-1921 118-513 (702)
8 COG4097 Predicted ferric reduc 100.0 9.3E-37 2E-41 347.1 31.5 357 1580-2013 68-435 (438)
9 KOG2408|consensus 100.0 7.3E-34 1.6E-38 367.6 16.3 244 18-282 425-716 (719)
10 cd06186 NOX_Duox_like_FAD_NADP 100.0 2.4E-28 5.2E-33 282.0 22.9 205 1737-2013 2-210 (210)
11 PF03098 An_peroxidase: Animal 100.0 2E-30 4.4E-35 335.8 3.0 234 5-248 249-530 (530)
12 PRK08051 fre FMN reductase; Va 99.9 1.1E-25 2.4E-30 263.3 24.3 224 1732-2014 3-230 (232)
13 cd06189 flavin_oxioreductase N 99.9 9.7E-26 2.1E-30 262.9 23.6 220 1735-2013 2-224 (224)
14 cd06184 flavohem_like_fad_nad_ 99.9 4.5E-25 9.7E-30 261.4 26.1 234 1729-2014 4-244 (247)
15 cd06195 FNR1 Ferredoxin-NADP+ 99.9 3.7E-25 8E-30 261.0 25.1 226 1736-2013 2-241 (241)
16 cd06216 FNR_iron_sulfur_bindin 99.9 5.3E-25 1.1E-29 260.0 26.4 231 1722-2013 3-243 (243)
17 cd06212 monooxygenase_like The 99.9 5.7E-25 1.2E-29 257.9 25.3 226 1733-2014 2-232 (232)
18 cd06215 FNR_iron_sulfur_bindin 99.9 5.5E-25 1.2E-29 258.0 24.7 225 1735-2013 2-231 (231)
19 cd06209 BenDO_FAD_NAD Benzoate 99.9 8.5E-25 1.8E-29 255.8 25.7 222 1733-2014 3-228 (228)
20 cd06198 FNR_like_3 NAD(P) bind 99.9 5.7E-25 1.2E-29 255.0 23.0 208 1744-2014 7-216 (216)
21 cd06188 NADH_quinone_reductase 99.9 6.5E-25 1.4E-29 264.6 24.4 233 1730-2013 8-283 (283)
22 cd06191 FNR_iron_sulfur_bindin 99.9 8.2E-25 1.8E-29 256.4 23.9 226 1735-2013 2-231 (231)
23 cd06190 T4MO_e_transfer_like T 99.9 1E-24 2.3E-29 255.8 24.6 228 1737-2014 2-232 (232)
24 cd06210 MMO_FAD_NAD_binding Me 99.9 1.2E-24 2.7E-29 255.8 25.3 226 1732-2014 2-236 (236)
25 cd06211 phenol_2-monooxygenase 99.9 1.1E-24 2.4E-29 256.3 24.9 228 1731-2013 6-238 (238)
26 cd06194 FNR_N-term_Iron_sulfur 99.9 8.4E-25 1.8E-29 254.8 22.8 218 1736-2014 1-222 (222)
27 PRK07609 CDP-6-deoxy-delta-3,4 99.9 9E-25 2E-29 270.5 24.1 228 1730-2014 101-333 (339)
28 PRK11872 antC anthranilate dio 99.9 1.4E-24 2.9E-29 267.8 24.8 226 1730-2014 105-336 (340)
29 cd06214 PA_degradation_oxidore 99.9 3E-24 6.5E-29 253.5 26.2 233 1732-2014 2-241 (241)
30 cd06217 FNR_iron_sulfur_bindin 99.9 2.3E-24 5E-29 253.5 25.0 228 1732-2013 2-235 (235)
31 cd06187 O2ase_reductase_like T 99.9 1.8E-24 3.8E-29 252.5 23.8 221 1736-2013 1-224 (224)
32 cd06213 oxygenase_e_transfer_s 99.9 2.8E-24 6.2E-29 251.1 25.2 222 1733-2013 2-227 (227)
33 PRK10684 HCP oxidoreductase, N 99.9 2.4E-24 5.3E-29 265.3 25.3 226 1732-2014 10-238 (332)
34 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 3.4E-24 7.4E-29 266.7 26.5 233 1732-2014 2-242 (352)
35 cd06197 FNR_like_2 FAD/NAD(P) 99.9 1.9E-24 4.2E-29 250.3 21.5 193 1738-2014 2-220 (220)
36 cd00322 FNR_like Ferredoxin re 99.9 9.9E-24 2.1E-28 246.0 22.7 219 1738-2011 2-223 (223)
37 cd06196 FNR_like_1 Ferredoxin 99.9 1.7E-23 3.6E-28 243.2 22.9 213 1733-2011 2-218 (218)
38 PRK13289 bifunctional nitric o 99.9 2.5E-23 5.3E-28 263.8 26.0 235 1729-2014 152-393 (399)
39 PRK08345 cytochrome-c3 hydroge 99.9 6E-23 1.3E-27 247.5 24.7 233 1731-2011 5-244 (289)
40 cd06221 sulfite_reductase_like 99.9 4.4E-23 9.5E-28 244.3 23.1 214 1736-2009 1-220 (253)
41 PRK05464 Na(+)-translocating N 99.9 6.3E-23 1.4E-27 259.1 25.5 233 1731-2014 133-408 (409)
42 COG1018 Hmp Flavodoxin reducta 99.9 2.2E-22 4.7E-27 236.2 26.1 223 1730-2014 4-231 (266)
43 PRK05713 hypothetical protein; 99.9 1.3E-22 2.8E-27 247.7 23.2 213 1732-2014 92-309 (312)
44 TIGR01941 nqrF NADH:ubiquinone 99.9 1.3E-22 2.8E-27 256.0 23.8 233 1731-2014 129-404 (405)
45 cd06185 PDR_like Phthalate dio 99.9 1.9E-22 4E-27 233.2 21.9 203 1738-2014 2-211 (211)
46 PRK10926 ferredoxin-NADP reduc 99.9 6.1E-22 1.3E-26 233.7 26.6 219 1731-1998 4-229 (248)
47 cd06183 cyt_b5_reduct_like Cyt 99.9 5.1E-22 1.1E-26 233.4 25.1 223 1735-2009 2-232 (234)
48 PRK08221 anaerobic sulfite red 99.9 1.3E-21 2.8E-26 232.7 24.6 214 1732-2009 8-222 (263)
49 PLN03116 ferredoxin--NADP+ red 99.9 1.8E-21 4E-26 236.4 26.0 226 1731-2002 24-286 (307)
50 cd06218 DHOD_e_trans FAD/NAD b 99.9 1.6E-21 3.5E-26 230.1 23.3 210 1736-2013 1-213 (246)
51 PRK00054 dihydroorotate dehydr 99.9 2.6E-21 5.7E-26 229.1 23.4 210 1731-2012 4-213 (250)
52 TIGR02911 sulfite_red_B sulfit 99.9 7.5E-21 1.6E-25 225.9 24.7 213 1733-2009 7-220 (261)
53 cd06220 DHOD_e_trans_like2 FAD 99.9 4.4E-21 9.6E-26 224.8 22.0 199 1735-2013 2-200 (233)
54 PTZ00274 cytochrome b5 reducta 99.9 1.4E-20 3E-25 228.0 24.8 224 1729-1993 50-281 (325)
55 cd06192 DHOD_e_trans_like FAD/ 99.9 7.7E-21 1.7E-25 224.4 21.7 199 1736-1998 1-201 (243)
56 PTZ00319 NADH-cytochrome B5 re 99.9 2.1E-20 4.6E-25 226.0 25.9 227 1731-2009 33-298 (300)
57 cd06208 CYPOR_like_FNR These f 99.9 2.4E-20 5.3E-25 224.9 25.2 223 1731-1998 8-262 (286)
58 cd06219 DHOD_e_trans_like1 FAD 99.9 3.5E-20 7.6E-25 219.1 24.0 198 1735-1997 2-202 (248)
59 PRK05802 hypothetical protein; 99.8 7.3E-20 1.6E-24 222.1 24.7 154 1729-1902 62-224 (320)
60 PLN03115 ferredoxin--NADP(+) r 99.8 6.8E-20 1.5E-24 223.9 24.3 224 1732-2000 91-344 (367)
61 PRK06222 ferredoxin-NADP(+) re 99.8 4.8E-20 1E-24 221.4 22.6 199 1734-1997 2-203 (281)
62 cd06200 SiR_like1 Cytochrome p 99.8 1.6E-19 3.4E-24 212.8 24.9 196 1745-1998 17-226 (245)
63 cd06182 CYPOR_like NADPH cytoc 99.8 1.1E-19 2.3E-24 216.4 23.2 207 1743-1998 14-238 (267)
64 TIGR03224 benzo_boxA benzoyl-C 99.8 1.6E-19 3.4E-24 226.6 25.5 220 1731-1999 142-387 (411)
65 PLN02283 alpha-dioxygenase 99.8 4.5E-21 9.7E-26 246.1 10.8 208 24-237 339-599 (633)
66 PF08030 NAD_binding_6: Ferric 99.8 2.2E-20 4.7E-25 205.3 13.1 153 1839-1995 1-156 (156)
67 COG0543 UbiB 2-polyprenylpheno 99.8 4.7E-19 1E-23 208.7 24.4 204 1733-1999 9-216 (252)
68 cd06201 SiR_like2 Cytochrome p 99.8 6.6E-19 1.4E-23 212.3 25.1 212 1730-2000 44-270 (289)
69 KOG0534|consensus 99.8 8E-19 1.7E-23 203.5 24.3 221 1730-1998 50-277 (286)
70 PLN02252 nitrate reductase [NA 99.8 4E-19 8.8E-24 238.3 25.0 220 1730-1997 633-878 (888)
71 cd06193 siderophore_interactin 99.8 7.6E-18 1.6E-22 197.7 22.2 207 1736-2013 1-233 (235)
72 PRK12779 putative bifunctional 99.7 4E-17 8.8E-22 222.6 24.6 211 1731-1997 648-869 (944)
73 PTZ00306 NADH-dependent fumara 99.7 6.3E-17 1.4E-21 227.3 25.3 229 1730-2009 913-1159(1167)
74 PRK12778 putative bifunctional 99.7 1.1E-16 2.3E-21 217.8 22.9 199 1734-1997 2-203 (752)
75 COG5126 FRQ1 Ca2+-binding prot 99.7 1.2E-16 2.7E-21 169.2 16.2 138 1249-1483 20-158 (160)
76 PRK12775 putative trifunctiona 99.7 6.6E-16 1.4E-20 212.8 21.8 200 1734-1998 2-204 (1006)
77 PF08022 FAD_binding_8: FAD-bi 99.7 3.1E-18 6.8E-23 173.8 -1.9 99 1733-1832 3-104 (105)
78 KOG0027|consensus 99.7 1.3E-15 2.8E-20 166.0 15.5 139 1248-1482 7-150 (151)
79 COG2871 NqrF Na+-transporting 99.6 1.9E-14 4E-19 159.1 17.0 233 1731-2014 134-409 (410)
80 KOG0028|consensus 99.6 2.9E-14 6.3E-19 146.4 15.1 109 1365-1482 62-171 (172)
81 cd06199 SiR Cytochrome p450- l 99.6 2.1E-14 4.5E-19 178.5 16.3 190 1756-2000 129-333 (360)
82 TIGR01931 cysJ sulfite reducta 99.5 5E-14 1.1E-18 185.0 15.5 189 1757-2000 367-570 (597)
83 KOG4223|consensus 99.5 8.6E-14 1.9E-18 159.2 14.9 223 1206-1477 70-301 (325)
84 cd06206 bifunctional_CYPOR The 99.5 1E-13 2.2E-18 174.2 16.4 192 1759-2000 147-353 (384)
85 KOG0034|consensus 99.5 1.6E-13 3.5E-18 151.2 15.9 117 1373-1491 67-185 (187)
86 cd06207 CyPoR_like NADPH cytoc 99.5 1.4E-13 3.1E-18 172.8 17.2 180 1774-2000 161-355 (382)
87 COG5126 FRQ1 Ca2+-binding prot 99.5 5.3E-13 1.1E-17 141.9 17.8 144 1195-1435 12-155 (160)
88 PTZ00183 centrin; Provisional 99.5 5.2E-13 1.1E-17 146.9 16.8 108 1367-1483 48-156 (158)
89 KOG0044|consensus 99.5 4.8E-13 1E-17 147.3 16.1 123 1370-1492 62-186 (193)
90 KOG0027|consensus 99.4 1.6E-12 3.4E-17 141.8 16.1 142 1212-1435 7-148 (151)
91 PTZ00184 calmodulin; Provision 99.4 2.2E-12 4.9E-17 140.2 16.3 105 1368-1481 43-148 (149)
92 cd06203 methionine_synthase_re 99.4 2.7E-12 5.8E-17 161.8 18.5 189 1774-1999 171-370 (398)
93 PRK06214 sulfite reductase; Pr 99.4 4.5E-12 9.7E-17 162.0 19.8 177 1773-1999 312-502 (530)
94 cd06204 CYPOR NADPH cytochrome 99.4 3.6E-12 7.9E-17 161.3 17.9 185 1774-1999 175-388 (416)
95 KOG0037|consensus 99.4 1.2E-11 2.6E-16 134.7 18.3 141 1195-1434 72-218 (221)
96 cd06202 Nitric_oxide_synthase 99.4 9E-12 2E-16 157.2 18.6 183 1775-1999 175-374 (406)
97 PRK10953 cysJ sulfite reductas 99.4 4.4E-12 9.6E-17 165.6 15.4 189 1757-2000 370-573 (600)
98 PTZ00183 centrin; Provisional 99.3 2.3E-11 5.1E-16 133.8 17.1 138 1213-1436 17-154 (158)
99 KOG0028|consensus 99.3 2.7E-11 5.7E-16 124.9 14.7 138 1213-1436 33-170 (172)
100 PTZ00184 calmodulin; Provision 99.3 6E-11 1.3E-15 129.0 18.1 137 1213-1435 11-147 (149)
101 KOG0031|consensus 99.3 4.6E-11 1E-15 122.0 15.3 133 1249-1481 32-165 (171)
102 KOG0044|consensus 99.3 1.4E-11 3.1E-16 135.8 12.0 135 47-181 37-177 (193)
103 KOG0037|consensus 99.3 9.3E-11 2E-15 127.9 17.9 162 1211-1480 55-219 (221)
104 PF00175 NAD_binding_1: Oxidor 99.2 2.8E-11 6.1E-16 124.4 10.2 109 1844-1992 1-109 (109)
105 KOG0030|consensus 99.2 5E-10 1.1E-14 112.9 14.1 106 1365-1480 40-150 (152)
106 KOG3378|consensus 99.2 3.4E-10 7.5E-15 125.0 14.0 131 1727-1865 145-288 (385)
107 KOG0038|consensus 99.1 9.3E-10 2E-14 110.7 13.3 113 1372-1488 71-184 (189)
108 KOG0036|consensus 99.1 1E-09 2.2E-14 128.7 14.2 102 1369-1484 48-149 (463)
109 KOG0036|consensus 99.1 3.8E-09 8.3E-14 124.0 17.8 169 1212-1482 13-184 (463)
110 PF01794 Ferric_reduct: Ferric 99.0 4.7E-10 1E-14 118.4 8.9 98 1580-1694 26-124 (125)
111 KOG0034|consensus 99.0 3.8E-09 8.2E-14 116.9 15.9 84 1195-1279 49-134 (187)
112 KOG4251|consensus 99.0 1.9E-09 4E-14 117.0 12.3 226 1212-1477 100-341 (362)
113 KOG2643|consensus 99.0 2.6E-09 5.6E-14 126.1 12.3 227 1222-1482 208-454 (489)
114 KOG4223|consensus 98.9 7.7E-09 1.7E-13 119.2 13.0 185 1195-1432 92-301 (325)
115 KOG2562|consensus 98.9 3.2E-08 6.9E-13 118.3 18.4 253 1215-1477 141-420 (493)
116 PF00970 FAD_binding_6: Oxidor 98.9 3.7E-09 8.1E-14 106.7 8.5 92 1733-1833 1-98 (99)
117 PRK06567 putative bifunctional 98.8 2.3E-08 5E-13 133.0 14.2 119 1732-1863 791-914 (1028)
118 PF13499 EF-hand_7: EF-hand do 98.8 9.7E-09 2.1E-13 95.3 7.0 66 1409-1479 1-66 (66)
119 COG0369 CysJ Sulfite reductase 98.7 9.6E-08 2.1E-12 123.3 16.2 176 1775-2000 371-560 (587)
120 KOG0031|consensus 98.7 3E-07 6.5E-12 94.7 16.0 133 1213-1435 32-164 (171)
121 KOG1158|consensus 98.7 1.2E-07 2.7E-12 121.7 14.9 185 1774-2000 419-618 (645)
122 PLN02964 phosphatidylserine de 98.7 9.5E-08 2.1E-12 123.5 12.2 64 1373-1436 180-243 (644)
123 cd05022 S-100A13 S-100A13: S-1 98.6 1.4E-07 3.1E-12 92.2 7.6 66 1408-1482 8-76 (89)
124 KOG0030|consensus 98.5 3E-06 6.5E-11 86.1 14.7 139 1211-1434 9-149 (152)
125 PF13499 EF-hand_7: EF-hand do 98.4 6.1E-07 1.3E-11 83.3 7.6 61 1215-1275 2-66 (66)
126 cd05027 S-100B S-100B: S-100B 98.3 1.3E-06 2.8E-11 85.7 7.8 65 1408-1481 8-79 (88)
127 KOG0377|consensus 98.3 5.4E-06 1.2E-10 97.7 13.2 69 1408-1481 547-615 (631)
128 KOG2643|consensus 98.3 1.5E-06 3.2E-11 103.4 8.7 162 1219-1437 292-454 (489)
129 cd05026 S-100Z S-100Z: S-100Z 98.3 1.4E-06 3E-11 86.6 7.1 70 1408-1482 10-82 (93)
130 PLN02964 phosphatidylserine de 98.2 6.3E-06 1.4E-10 107.0 13.6 95 1166-1277 145-243 (644)
131 PRK05419 putative sulfite oxid 98.2 1.4E-05 3.1E-10 90.7 14.3 99 1580-1699 66-165 (205)
132 cd05022 S-100A13 S-100A13: S-1 98.2 3.9E-06 8.4E-11 82.2 7.8 68 1212-1279 7-77 (89)
133 cd05025 S-100A1 S-100A1: S-100 98.2 7.1E-06 1.5E-10 81.6 8.8 71 1408-1483 9-82 (92)
134 KOG0377|consensus 98.1 5E-05 1.1E-09 89.8 15.6 149 1211-1436 462-615 (631)
135 KOG0038|consensus 98.1 1.4E-05 3.1E-10 81.2 9.6 82 1196-1278 55-137 (189)
136 cd05029 S-100A6 S-100A6: S-100 98.1 6.4E-06 1.4E-10 80.8 7.0 65 1409-1482 11-80 (88)
137 cd05031 S-100A10_like S-100A10 98.1 8.8E-06 1.9E-10 81.3 8.0 71 1408-1483 8-81 (94)
138 cd05027 S-100B S-100B: S-100B 98.0 1.8E-05 4E-10 77.6 8.7 67 1212-1278 7-80 (88)
139 smart00027 EH Eps15 homology d 98.0 3.4E-05 7.3E-10 77.4 10.4 68 1213-1282 10-77 (96)
140 cd05023 S-100A11 S-100A11: S-1 98.0 2.6E-05 5.6E-10 76.7 8.8 70 1408-1482 9-81 (89)
141 KOG0751|consensus 98.0 6.7E-05 1.4E-09 90.0 13.8 186 1195-1478 51-241 (694)
142 KOG4251|consensus 98.0 7.2E-05 1.6E-09 82.2 12.3 182 1247-1479 99-307 (362)
143 cd05026 S-100Z S-100Z: S-100Z 97.9 2.9E-05 6.2E-10 77.3 8.6 67 1213-1279 10-83 (93)
144 smart00027 EH Eps15 homology d 97.9 2.8E-05 6E-10 78.1 8.2 65 1408-1483 10-74 (96)
145 cd00052 EH Eps15 homology doma 97.9 2.8E-05 6.1E-10 72.2 7.1 61 1411-1482 2-62 (67)
146 cd00213 S-100 S-100: S-100 dom 97.9 2.1E-05 4.5E-10 77.7 6.4 70 1408-1482 8-80 (88)
147 KOG1159|consensus 97.9 5.3E-05 1.1E-09 91.8 10.9 179 1764-2000 358-548 (574)
148 PF13833 EF-hand_8: EF-hand do 97.9 2.5E-05 5.3E-10 69.4 5.7 52 1421-1481 1-53 (54)
149 PF13833 EF-hand_8: EF-hand do 97.8 4.2E-05 9.2E-10 67.9 6.9 52 1226-1277 1-53 (54)
150 cd05025 S-100A1 S-100A1: S-100 97.8 5.9E-05 1.3E-09 75.0 8.7 67 1212-1278 8-81 (92)
151 cd00052 EH Eps15 homology doma 97.8 3.8E-05 8.3E-10 71.3 6.9 60 1216-1277 2-61 (67)
152 cd00051 EFh EF-hand, calcium b 97.8 5.6E-05 1.2E-09 68.2 7.6 61 1215-1275 2-62 (63)
153 cd05031 S-100A10_like S-100A10 97.8 5.9E-05 1.3E-09 75.4 8.4 67 1212-1278 7-80 (94)
154 cd00252 SPARC_EC SPARC_EC; ext 97.8 3.6E-05 7.9E-10 79.2 6.7 61 1408-1481 48-108 (116)
155 cd05029 S-100A6 S-100A6: S-100 97.7 0.00011 2.5E-09 72.1 8.5 66 1213-1278 10-80 (88)
156 cd00252 SPARC_EC SPARC_EC; ext 97.7 9.1E-05 2E-09 76.3 7.5 62 1211-1276 46-107 (116)
157 cd00051 EFh EF-hand, calcium b 97.7 7.2E-05 1.6E-09 67.5 5.9 61 1410-1479 2-62 (63)
158 cd05023 S-100A11 S-100A11: S-1 97.7 0.00017 3.8E-09 70.9 8.7 66 1213-1278 9-81 (89)
159 cd00213 S-100 S-100: S-100 dom 97.6 0.00016 3.4E-09 71.4 7.7 67 1212-1278 7-80 (88)
160 KOG4666|consensus 97.6 4.3E-05 9.3E-10 87.6 3.3 122 1354-1486 242-364 (412)
161 KOG0040|consensus 97.5 0.00053 1.1E-08 91.1 13.1 143 1244-1479 2245-2396(2399)
162 COG2717 Predicted membrane pro 97.5 0.0015 3.2E-08 73.1 14.7 126 1582-1728 68-194 (209)
163 cd05030 calgranulins Calgranul 97.5 0.00027 5.9E-09 69.6 7.6 66 1408-1482 8-80 (88)
164 KOG0033|consensus 97.5 4.5E-05 9.7E-10 85.0 1.6 56 1112-1167 210-270 (355)
165 KOG0041|consensus 97.5 0.00026 5.5E-09 76.4 7.1 66 1408-1482 99-164 (244)
166 KOG0041|consensus 97.4 0.00092 2E-08 72.2 10.5 39 1365-1403 128-166 (244)
167 PF00036 EF-hand_1: EF hand; 97.4 0.00018 4E-09 54.7 3.7 27 1410-1436 2-28 (29)
168 PF00036 EF-hand_1: EF hand; 97.3 0.00034 7.3E-09 53.3 4.1 26 1215-1240 2-27 (29)
169 PF14658 EF-hand_9: EF-hand do 97.1 0.0013 2.8E-08 59.7 6.6 62 1412-1481 2-64 (66)
170 cd05024 S-100A10 S-100A10: A s 97.0 0.0026 5.6E-08 62.1 8.3 68 1409-1482 9-77 (91)
171 cd05030 calgranulins Calgranul 97.0 0.0019 4.2E-08 63.6 7.4 66 1213-1278 8-80 (88)
172 PF14658 EF-hand_9: EF-hand do 96.9 0.003 6.6E-08 57.4 7.0 61 1217-1277 2-64 (66)
173 KOG4065|consensus 96.9 0.003 6.6E-08 62.2 7.2 71 1408-1478 67-142 (144)
174 cd05024 S-100A10 S-100A10: A s 96.9 0.0056 1.2E-07 59.8 9.0 38 1365-1402 41-78 (91)
175 PF13405 EF-hand_6: EF-hand do 96.7 0.0014 3.1E-08 50.9 3.3 29 1409-1437 1-30 (31)
176 COG2375 ViuB Siderophore-inter 96.7 0.18 3.9E-06 59.2 21.4 199 1730-1997 16-243 (265)
177 KOG2562|consensus 96.6 0.017 3.8E-07 70.5 13.1 83 1195-1277 293-379 (493)
178 PRK12309 transaldolase/EF-hand 96.5 0.0055 1.2E-07 76.5 8.0 61 1205-1278 326-386 (391)
179 KOG4666|consensus 96.5 0.0017 3.7E-08 75.0 3.0 107 29-136 216-326 (412)
180 PRK12309 transaldolase/EF-hand 96.4 0.012 2.5E-07 73.6 9.9 60 1365-1437 327-386 (391)
181 PF14788 EF-hand_10: EF hand; 96.3 0.011 2.4E-07 50.7 6.1 49 1229-1277 1-49 (51)
182 KOG0751|consensus 96.3 0.048 1E-06 66.5 13.5 99 1371-1485 107-211 (694)
183 PF13202 EF-hand_5: EF hand; P 96.2 0.0055 1.2E-07 45.1 3.5 25 1410-1434 1-25 (25)
184 PF13202 EF-hand_5: EF hand; P 96.1 0.0073 1.6E-07 44.4 3.6 23 1216-1238 2-24 (25)
185 PF14788 EF-hand_10: EF hand; 96.0 0.018 3.9E-07 49.5 6.1 50 1388-1437 1-50 (51)
186 KOG0032|consensus 96.0 0.0035 7.5E-08 78.8 2.4 58 1111-1168 235-297 (382)
187 PF12763 EF-hand_4: Cytoskelet 95.7 0.038 8.2E-07 56.0 7.9 64 1406-1481 8-71 (104)
188 PF13405 EF-hand_6: EF-hand do 95.6 0.017 3.7E-07 44.9 4.1 26 1215-1240 2-27 (31)
189 PF10591 SPARC_Ca_bdg: Secrete 95.5 0.013 2.8E-07 60.5 4.1 65 1207-1273 48-112 (113)
190 KOG0040|consensus 95.4 0.079 1.7E-06 71.7 11.6 65 1213-1277 2253-2324(2399)
191 PF12763 EF-hand_4: Cytoskelet 95.4 0.051 1.1E-06 55.1 7.9 64 1212-1278 9-72 (104)
192 KOG0599|consensus 94.9 0.012 2.6E-07 67.2 1.8 56 1112-1167 226-286 (411)
193 PF10591 SPARC_Ca_bdg: Secrete 94.4 0.021 4.4E-07 59.0 2.0 61 1406-1477 52-112 (113)
194 KOG0604|consensus 94.3 0.01 2.2E-07 68.8 -0.5 57 1112-1168 261-326 (400)
195 KOG0169|consensus 93.5 0.78 1.7E-05 60.2 13.8 106 1371-1483 171-276 (746)
196 KOG0046|consensus 93.4 0.24 5.2E-06 61.5 8.6 74 1194-1278 10-86 (627)
197 KOG0046|consensus 93.3 0.16 3.5E-06 62.9 6.9 67 1409-1482 20-86 (627)
198 KOG4065|consensus 92.1 0.39 8.5E-06 47.9 6.5 26 1253-1278 71-96 (144)
199 KOG1029|consensus 91.7 0.75 1.6E-05 59.3 10.0 61 1409-1480 196-256 (1118)
200 KOG0169|consensus 91.5 1.7 3.8E-05 57.1 13.3 66 1212-1277 135-200 (746)
201 KOG0607|consensus 90.9 0.086 1.9E-06 61.8 0.8 50 1119-1168 311-365 (463)
202 KOG4347|consensus 89.9 0.24 5.3E-06 63.4 3.6 60 68-128 553-612 (671)
203 KOG0615|consensus 89.5 0.075 1.6E-06 64.6 -1.3 57 1112-1168 379-441 (475)
204 smart00054 EFh EF-hand, calciu 89.3 0.34 7.4E-06 35.6 2.7 26 1410-1435 2-27 (29)
205 KOG0610|consensus 88.9 0.21 4.6E-06 61.0 2.0 48 1112-1161 333-380 (459)
206 smart00054 EFh EF-hand, calciu 88.8 0.43 9.2E-06 35.1 3.0 26 1251-1276 2-27 (29)
207 KOG3866|consensus 88.5 6.7 0.00015 45.9 13.2 96 1366-1481 221-324 (442)
208 PF08021 FAD_binding_9: Sidero 87.6 1.5 3.2E-05 45.8 7.0 89 1735-1832 1-117 (117)
209 PF05042 Caleosin: Caleosin re 86.5 6.1 0.00013 43.4 10.9 66 1369-1435 93-165 (174)
210 KOG3866|consensus 85.6 7.6 0.00017 45.5 11.6 57 1375-1437 299-355 (442)
211 PF09279 EF-hand_like: Phospho 85.2 2.6 5.7E-05 41.0 7.0 72 1409-1484 1-72 (83)
212 KOG0588|consensus 84.6 0.37 8E-06 62.1 0.8 56 1112-1171 210-270 (786)
213 PF08414 NADPH_Ox: Respiratory 84.4 2.5 5.4E-05 41.8 6.1 52 1352-1403 41-95 (100)
214 KOG0998|consensus 81.9 0.94 2E-05 62.6 3.1 236 1212-1484 10-348 (847)
215 PF09279 EF-hand_like: Phospho 80.8 2.8 6.1E-05 40.8 5.2 63 1214-1277 1-69 (83)
216 KOG0580|consensus 77.5 1.4 3.1E-05 50.5 2.2 54 1112-1169 220-278 (281)
217 KOG0585|consensus 77.1 0.98 2.1E-05 56.2 0.9 54 1112-1167 317-375 (576)
218 PLN02952 phosphoinositide phos 76.9 11 0.00024 49.9 10.3 93 1385-1481 13-110 (599)
219 KOG3555|consensus 76.4 3.1 6.7E-05 49.5 4.6 62 1212-1277 249-310 (434)
220 KOG4578|consensus 75.7 2.1 4.6E-05 50.4 3.0 67 1410-1484 335-401 (421)
221 KOG4347|consensus 74.1 3.7 8E-05 53.2 4.8 61 1369-1430 552-612 (671)
222 KOG4578|consensus 73.3 2.3 5E-05 50.1 2.5 64 1214-1277 334-398 (421)
223 PF09069 EF-hand_3: EF-hand; 72.1 18 0.0004 35.8 8.0 77 1407-1488 2-82 (90)
224 KOG1029|consensus 70.0 5.4 0.00012 51.9 4.9 65 1211-1277 193-257 (1118)
225 KOG3555|consensus 69.3 5.9 0.00013 47.3 4.6 64 1407-1483 249-312 (434)
226 PF15086 UPF0542: Uncharacteri 68.7 4.6 0.0001 37.3 2.8 43 286-329 15-59 (74)
227 KOG4236|consensus 68.6 2.9 6.3E-05 52.5 2.1 58 1114-1171 764-826 (888)
228 KOG4717|consensus 62.0 7.3 0.00016 49.0 3.8 115 1112-1241 217-338 (864)
229 PF05042 Caleosin: Caleosin re 61.4 18 0.00039 39.9 6.2 65 1213-1277 7-124 (174)
230 KOG0039|consensus 58.6 70 0.0015 43.6 12.5 45 1227-1278 2-46 (646)
231 PRK03735 cytochrome b6; Provis 55.8 54 0.0012 38.3 9.3 28 1581-1608 83-111 (223)
232 KOG0575|consensus 55.8 5.6 0.00012 51.5 1.4 51 1112-1166 216-271 (592)
233 KOG0616|consensus 54.6 10 0.00022 45.2 3.1 46 1112-1161 239-284 (355)
234 cd00214 Calpain_III Calpain, s 53.9 2.8 6.1E-05 45.9 -1.4 45 1070-1129 96-142 (150)
235 KOG1955|consensus 53.5 16 0.00035 45.5 4.7 60 1410-1480 233-292 (737)
236 KOG1707|consensus 53.2 51 0.0011 43.0 9.1 33 1452-1484 314-346 (625)
237 KOG0042|consensus 52.6 28 0.0006 44.8 6.6 76 1193-1278 583-658 (680)
238 KOG0035|consensus 51.1 38 0.00082 46.5 7.9 59 1373-1432 789-848 (890)
239 KOG0605|consensus 50.8 11 0.00023 48.3 2.7 49 1112-1161 386-434 (550)
240 KOG2243|consensus 50.4 19 0.00041 49.1 4.8 63 1414-1486 4063-4125(5019)
241 KOG0592|consensus 49.3 7.3 0.00016 49.8 1.0 46 1112-1161 285-330 (604)
242 KOG1955|consensus 48.4 28 0.00062 43.4 5.6 64 1213-1278 231-294 (737)
243 KOG0690|consensus 46.7 12 0.00027 44.5 2.2 45 1112-1160 366-410 (516)
244 KOG2243|consensus 46.0 59 0.0013 44.8 8.1 92 1191-1396 4020-4116(5019)
245 KOG0598|consensus 44.6 14 0.0003 45.3 2.3 47 1111-1160 222-268 (357)
246 KOG0035|consensus 43.7 31 0.00067 47.2 5.5 72 1408-1484 747-819 (890)
247 PF08726 EFhand_Ca_insen: Ca2+ 43.1 6.4 0.00014 36.9 -0.6 60 1405-1477 3-65 (69)
248 KOG0042|consensus 40.2 28 0.00062 44.7 4.1 65 1410-1483 595-659 (680)
249 cd00284 Cytochrome_b_N Cytochr 39.1 1.3E+02 0.0027 34.8 8.8 29 1581-1609 64-93 (200)
250 PF15086 UPF0542: Uncharacteri 39.0 68 0.0015 30.1 5.1 27 980-1007 20-48 (74)
251 PLN02952 phosphoinositide phos 35.8 98 0.0021 41.4 8.1 69 1226-1298 13-83 (599)
252 PF05517 p25-alpha: p25-alpha 35.5 2.1E+02 0.0045 31.6 9.5 65 1216-1280 2-72 (154)
253 PF01292 Ni_hydr_CYTB: Prokary 34.6 2.7E+02 0.0058 31.1 10.7 23 1587-1609 42-64 (182)
254 CHL00070 petB cytochrome b6 33.6 1.3E+02 0.0029 34.9 7.9 27 1581-1607 75-102 (215)
255 KOG0597|consensus 31.5 28 0.0006 44.9 2.1 56 1112-1171 198-259 (808)
256 PF05517 p25-alpha: p25-alpha 31.3 4.6E+02 0.01 28.9 11.3 65 1375-1439 2-72 (154)
257 PF00033 Cytochrom_B_N: Cytoch 31.2 2.1E+02 0.0044 32.1 9.1 33 1580-1612 39-71 (188)
258 PRK13553 fumarate reductase cy 31.2 4.4E+02 0.0095 31.5 11.5 103 1589-1704 26-148 (258)
259 KOG0583|consensus 31.2 23 0.0005 44.8 1.4 54 1112-1168 221-279 (370)
260 PF01794 Ferric_reduct: Ferric 30.4 94 0.002 32.3 5.7 46 1654-1699 2-53 (125)
261 PF09874 DUF2101: Predicted me 29.9 2.9E+02 0.0064 31.5 9.3 30 1737-1766 147-176 (206)
262 PF08880 QLQ: QLQ; InterPro: 29.3 34 0.00074 28.0 1.6 33 213-246 1-34 (37)
263 COG4485 Predicted membrane pro 29.0 1.1E+02 0.0024 40.7 6.6 52 1675-1729 126-180 (858)
264 KOG1707|consensus 29.0 2.5E+02 0.0054 37.0 9.7 44 1213-1256 195-239 (625)
265 PF04876 Tenui_NCP: Tenuivirus 28.7 2.4E+02 0.0052 30.3 7.8 41 1445-1488 127-167 (175)
266 KOG0696|consensus 27.9 26 0.00056 43.2 0.9 45 1112-1160 548-592 (683)
267 MTH00016 CYTB cytochrome b; Va 27.9 4.6E+02 0.01 33.4 11.9 19 1589-1607 82-100 (378)
268 PRK10639 formate dehydrogenase 27.2 3.9E+02 0.0085 31.0 10.5 27 1585-1611 51-77 (211)
269 MTH00156 CYTB cytochrome b; Pr 27.0 3.9E+02 0.0084 33.8 11.0 19 1589-1607 71-89 (356)
270 PF15099 PIRT: Phosphoinositid 26.7 56 0.0012 34.1 2.9 31 981-1011 82-112 (129)
271 PF01102 Glycophorin_A: Glycop 25.7 73 0.0016 33.5 3.6 30 973-1003 59-88 (122)
272 cd05611 STKc_Rim15_like Cataly 25.3 46 0.00099 39.3 2.5 50 1112-1161 191-240 (260)
273 KOG0603|consensus 25.3 26 0.00055 46.0 0.3 49 1113-1167 512-566 (612)
274 MTH00145 CYTB cytochrome b; Pr 24.0 5.2E+02 0.011 33.0 11.4 19 1589-1607 82-100 (379)
275 KOG1688|consensus 23.8 9.3E+02 0.02 26.9 11.3 48 1670-1721 109-157 (188)
276 cd05596 STKc_ROCK Catalytic do 22.9 40 0.00087 42.7 1.4 56 1112-1167 245-307 (370)
277 PLN02223 phosphoinositide phos 22.3 2.2E+02 0.0048 37.5 7.7 77 1405-1482 13-93 (537)
278 PF02060 ISK_Channel: Slow vol 22.2 1.3E+02 0.0028 31.5 4.5 31 976-1008 38-68 (129)
279 PF14358 DUF4405: Domain of un 22.0 1.2E+02 0.0027 27.9 4.1 30 1580-1609 34-63 (64)
280 MTH00191 CYTB cytochrome b; Pr 21.9 6.4E+02 0.014 32.0 11.6 27 1581-1607 69-96 (365)
281 PF09069 EF-hand_3: EF-hand; 21.6 1.4E+02 0.003 29.8 4.5 36 105-141 2-37 (90)
282 PF11867 DUF3387: Domain of un 21.1 1E+03 0.022 29.8 13.2 61 1214-1276 102-165 (335)
283 PF13706 PepSY_TM_3: PepSY-ass 21.0 1E+02 0.0023 25.2 2.9 22 1586-1607 3-24 (37)
284 PF09068 EF-hand_2: EF hand; 20.9 6E+02 0.013 27.1 9.4 93 1388-1480 14-124 (127)
285 cd05585 STKc_YPK1_like Catalyt 20.8 44 0.00095 41.0 1.1 45 1112-1160 191-235 (312)
286 smart00720 calpain_III calpain 20.7 58 0.0013 35.2 1.9 44 1070-1128 91-136 (143)
287 PF11116 DUF2624: Protein of u 20.5 4.4E+02 0.0096 26.0 7.4 69 1388-1462 14-82 (85)
No 1
>KOG2408|consensus
Probab=100.00 E-value=2e-105 Score=1029.63 Aligned_cols=533 Identities=32% Similarity=0.521 Sum_probs=447.7
Q ss_pred Cccccccccccccccccccccccc--ccccccCCCCccccccccCCccccccccCCCCccccccccccCCcccCCCCCce
Q psy5584 337 SKANLAVGTVDKMAVREWLHANHK--RFVKIRLGPETCLHTVDRKGEKLRTVNFKNCDTVTIEESQFSTNREFQHQAKTS 414 (2014)
Q Consensus 337 ~~~~~~~gs~n~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~t~ 414 (2014)
++.|+.||.|||...|.||.++++ |.+.+.+.+..-.|+....|. .+|+++.|+.......+ .+.+.+.|+
T Consensus 149 ~~yRt~dG~CNN~~~P~~Gas~~~~~Rllpp~Yedg~~~p~~~~~~~-----~lP~~R~vS~~l~~~~~--~~~~~~~~~ 221 (719)
T KOG2408|consen 149 SKYRTIDGTCNNLRNPTLGASNSPFRRLLPPKYEDGFSTPRGWSDGT-----PLPSARLVSNKLLSRSF--SPPDSKFNH 221 (719)
T ss_pred cCccccccccCCCCCCCcccccChhhccCCccccccccCccccccCC-----CCCchHHhhHhhhcccc--CCCCcchhH
Confidence 467999999999999999998886 333332222222344334443 35566788864333222 778899999
Q ss_pred eeeecCcccccccccccCCCC----------CC------CCcceeeccCCCCccccCCCCCCceeecccCcccCCCCCCC
Q psy5584 415 IEDFYGDGQVVSSEIVMASES----------GC------PIEMHEIEIEKCDEMYDKDCEGGKYIPFHRAGYDRSTGTSP 478 (2014)
Q Consensus 415 ~~~~fg~gq~i~hDi~~~~~~----------~c------~~~~~~i~i~~~Dp~~~~~~~~~~c~~f~Rs~~~~~~g~~~ 478 (2014)
|+|+|| |||+|||++++.. +| .+.|+||.+|++||+|... ..||+|+||.+++.+| +.
T Consensus 222 ~~mqwg--QFi~HDl~~~~~~~~~~~~~~~~~C~~~~~~~p~C~pi~~p~~dp~~~~~---~~C~~f~Rs~~~~~~~-~~ 295 (719)
T KOG2408|consen 222 MAMQWG--QFIDHDLYFTPLSTVQNGELNIRCCNKPQLPSPPCFPIKIPPNDPYFPSN---QRCLPFVRSLPACGSG-YN 295 (719)
T ss_pred HHHHHH--HHhcccccccCCcccccCCccccccCCCcCCCCcccceecCCCCCccCCc---ccceeceecCCCcccc-cc
Confidence 999999 9999999998631 35 3789999999999998764 2999999999998877 67
Q ss_pred CCcccccccccccccCCcCCCCCHHHHHhhhcCCC--CccccCCCCCCCCCCCCCCCCCCCCCCCccccc--cccccccc
Q psy5584 479 NSPRQQINRVSSWIDGSFIYSTSEAWLNAMRSFTN--GSLATDASGKMPVKNTMRVPLFNNPVPHSLRTL--SPERLYLL 554 (2014)
Q Consensus 479 ~~~r~q~N~~Ts~lD~S~vYGs~~~~~~~LR~~~~--G~L~~~~~~~~p~~~~~~lp~~~~~~~~~~~~~--~~~~~~~~ 554 (2014)
.++|+|+|++|||||+|.||||+.+++++||.|++ |+|+.+.+ +...+...+|..+.++..|.... ....||.+
T Consensus 296 ~~~reQlNq~T~~lD~S~IYGss~~~~~~lR~f~~~~g~l~~~~~--~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~a 373 (719)
T KOG2408|consen 296 LGPREQLNQLTSFLDASVIYGSSDEDARKLRLFKDGKGLLRVDTG--LFENGRPLLPFSTDPPNSCRSKPPGAPKPCFTA 373 (719)
T ss_pred CChhhhhccccccccchhccCCCHHHHHHHhcccCcccceeeccc--ccccCcccCCCCCCCCccccccCCCCCCccccc
Confidence 89999999999999999999999999999999999 67776632 11223334555444311122222 24689999
Q ss_pred CCcccccchhHHHHHHHHHhhhHHHHHHHHhhCCCCCchHhHHHHHhHHHHHHHHhhhhhhchhhhCCC----CCCCCCC
Q psy5584 555 GDARSNQNPALLAFSILFFRWHNVIAAQIEDKHPELSDEEIFQKTRRLVVASLQNVIAYEYIPAFLGRS----LSPYRGY 630 (2014)
Q Consensus 555 Gd~R~ne~p~l~~lh~lf~R~HN~ia~~L~~~np~w~De~lFq~AR~iv~a~~Q~I~~~e~Lp~ilg~~----~~~~~~y 630 (2014)
||.|+|++|+|++|||+|+|||||||++|+++||+|+||+|||||||||+|++|||||+||||.+||.. .+.|.||
T Consensus 374 GD~R~~~~pgL~~~hti~lREHNRiA~~Lk~~np~W~dE~lfQeaRkI~~A~~q~Ity~e~LP~ilG~~~~~~~g~~~gY 453 (719)
T KOG2408|consen 374 GDERANEQPGLAALHTLFLREHNRIATELKALNPHWSDERLFQEARKIVGAQVQHITYNEYLPKLLGAPLKVSLGGYRGY 453 (719)
T ss_pred CccccccCcchHHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHhhhhHHhhhhhhcCcccccCCccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999954 3688999
Q ss_pred CCCCCCCchhHHHHhHhhhccccCCCcccccCcccCCCcCCCCCCCCCCCCCccCCCCCccccchhhhhhccccCCCCCc
Q psy5584 631 KMDVHPGISHVFQTAAFRFGHSLIPPGIYRRDEKCNFKPTVKGDPAPPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPGI 710 (2014)
Q Consensus 631 ~~~~~p~is~eF~~aa~RfgHs~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~r~ghs~~~~~~ 710 (2014)
+|.+||+|++||++||||||||++++.+.+++. +|++.
T Consensus 454 ~~~~dp~IsneFataAfRfgHsli~~~~~~l~~--~~~~~---------------------------------------- 491 (719)
T KOG2408|consen 454 DPNVDPTISNEFATAAFRFGHSLIPPFFQRLDE--NFQPI---------------------------------------- 491 (719)
T ss_pred CCCCChhhhhhhhHHHHhhhcccCchhhhhhcc--cCccc----------------------------------------
Confidence 999999999999999999999999998877665 22221
Q ss_pred cccCcccCCCCCCCCCcccccccCCCCCCCCCccccccccccCcccccCcCcHHHHHHHHhhcccccc-cccccHHhhhc
Q psy5584 711 YRRDEKCNFKPTVKGDPAIRLCSNWWDSTNVDPAIRLCSNWWDSTNVMTYSTLEEILMGMASQLSEKE-DAVLCSDIRDK 789 (2014)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~g~~~q~a~~~-d~~~~~~l~~~ 789 (2014)
+ ....+.+.+.|++++.+..++++|++++|+++++++.. |..++.+++++
T Consensus 492 ------------~-----------------~~~~l~~~~~~~~~~~i~~~ggid~llrGl~~~~~~~~~d~~~~~~i~~~ 542 (719)
T KOG2408|consen 492 ------------G-----------------EVVNLPLHDAFFNPWLILNEGGIDPLLRGLTTQPAKMPDDQLLNGEITER 542 (719)
T ss_pred ------------c-----------------cccCchhhhhhcchhhhhhccChhHHHHHHHhchhhcccchhcCHHHHHH
Confidence 0 00125677789999999999999999999999999999 89999999999
Q ss_pred cCCCCCCCC-cchhhhhhhhhccCCCCChHHHHHhcCCCCCCChhhhhhhccccccccchHHHHHHHHHHhCCCCCCccc
Q psy5584 790 LFGPNEFSR-RDLGALNIMRGRDNGIADYNTVRSNYNLKKLKSWNDLEAVNPALFKEAHGKEILKRLKRSYGNSLDNIDL 868 (2014)
Q Consensus 790 lf~~~~~~~-~DL~alnIqRgRd~Glp~yn~~R~~~gl~~~~~f~dl~~~~~~~~~~~~~~~~~~~L~~lY~~~~ddiDL 868 (2014)
+|+.....+ +||+|||||||||||||+||+||++|||+++++|+||.+ ++. ++++++|+.+|++ ||||||
T Consensus 543 lf~~~~~~~~~DL~ainIQRgRDhGlp~Yn~yR~~cgL~~~~s~edL~~---~i~-----~~~~~kl~~lY~~-~ddiDL 613 (719)
T KOG2408|consen 543 LFVKTDEDGELDLAALNIQRGRDHGLPPYNEYRKFCGLSPATSFEDLSD---EIE-----PEIINKLRTLYGT-PDDIDL 613 (719)
T ss_pred HhhhcCcccccchhhhhhhccccCCCCCHHHHHHHcCCCCCCCHHHhhh---hhh-----HHHHHHHHHhcCC-chhhcc
Confidence 999877776 999999999999999999999999999999999999954 332 6899999999995 999999
Q ss_pred ccccccCCC---CCCChHHHHHHHHHHHHhhcCCcceeccCCCCCCCHHHHHHHHhcchhhHhhhc-CCCCccccccccc
Q psy5584 869 YIGGMLESH---EGPGPLFTNIILEQFTRLRDADRFWFENTENGMFTAAEVEAIRKITLWDIIVNA-TDIGADAIQKNVF 944 (2014)
Q Consensus 869 ~~G~l~E~~---~~~Gpt~~~ii~~qf~rlr~gDRf~~en~~~~~ft~~ql~ei~~~tl~~iic~n-~~~~~~~iq~~~F 944 (2014)
|||+++|++ +.+|||++|||++||.|+|+||||||||.+++.||++||+||||+||++|||+| +++ ...+++++|
T Consensus 614 ~vG~~~E~~~~g~~vGPTl~cii~~Qf~r~r~gDRf~yen~~~~~Ft~~QL~ei~k~sLariiC~N~~~~-~~~~~~~~f 692 (719)
T KOG2408|consen 614 YVGLLLEKPLPGGLVGPTLACIIAEQFLRLRDGDRFWYENFNPGVFTPEQLEEIRKVSLARIICDNGTKI-TKVSRFDVF 692 (719)
T ss_pred cccccccccCCCceecccHHHHHHHHHHHHhccCceeecCCCCCccCHHHHHHHHHhhchheeecCCccc-ccccccCCc
Confidence 999999999 789999999999999999999999999977999999999999999999999999 554 334444999
Q ss_pred cccCCCCCCCCcccCCCCCCCCCCCCcccCC
Q psy5584 945 FWNATDPCPQPAQLNASMMMPCSYLKGFDYF 975 (2014)
Q Consensus 945 ~~~~~~~c~~~~~~~~~~~~~c~~~~~~d~~ 975 (2014)
..++. . +..++|++++.+|+-
T Consensus 693 ~~~~~---------~-~~~~~c~~ip~~dl~ 713 (719)
T KOG2408|consen 693 DFPDA---------P-NDPVPCSSIPGLDLN 713 (719)
T ss_pred ccccc---------C-CCCCCccccchhhhh
Confidence 88772 3 788999999999974
No 2
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=4.8e-105 Score=1029.46 Aligned_cols=506 Identities=35% Similarity=0.577 Sum_probs=393.4
Q ss_pred cccccccccccccccccccccc--ccccccCCCCccccccccCCccccccccCCCCccccccccccCCcccCCCCCceee
Q psy5584 339 ANLAVGTVDKMAVREWLHANHK--RFVKIRLGPETCLHTVDRKGEKLRTVNFKNCDTVTIEESQFSTNREFQHQAKTSIE 416 (2014)
Q Consensus 339 ~~~~~gs~n~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~t~~~ 416 (2014)
.|+.||+|||+.+|.||+|+++ |.+.+.++++...|+.+.+|..||++ +.|+...........+++++.|+|+
T Consensus 1 yRt~dG~cNN~~~p~~G~~~~~~~Rllp~~Y~dg~~~pr~~~~g~~lP~p-----R~is~~l~~~~~~~~~~~~~~t~l~ 75 (530)
T PF03098_consen 1 YRTYDGSCNNLANPSWGAAGTPFRRLLPPAYADGVSEPRGSSNGSPLPNP-----REISNALFRRKDGFDPSHSGLTALF 75 (530)
T ss_dssp S--SSSTTSSSSSTTTT-SSEE-BESS-B--TTSSSBTTTSBTTBS---H-----HHHHHHHTB-SSGTTBEEEEEEHHH
T ss_pred CCCCCCCccCCCcccccCCCCcccccCCccccccccccccccCCccCCCH-----HHHHHHHhhcccccCCCCCcchHHH
Confidence 3789999999999999999997 55554444443356666777777766 5887533322122356778899999
Q ss_pred eecCcccccccccccCCCCC-C--CCcceeeccCCCCccccCCCCCCceeecccCcccCCCCCCCCCccccccccccccc
Q psy5584 417 DFYGDGQVVSSEIVMASESG-C--PIEMHEIEIEKCDEMYDKDCEGGKYIPFHRAGYDRSTGTSPNSPRQQINRVSSWID 493 (2014)
Q Consensus 417 ~~fg~gq~i~hDi~~~~~~~-c--~~~~~~i~i~~~Dp~~~~~~~~~~c~~f~Rs~~~~~~g~~~~~~r~q~N~~Ts~lD 493 (2014)
++|| |||+|||++++... | +++|+||+||++||+|++. ..||||+||.+++.+|.++..||||+|++|||||
T Consensus 76 ~~~g--Qfi~HDi~~~~~~~~C~~~~~c~~I~ip~~Dp~~~~~---~~c~~~~Rs~~~~~~~~~~~~~req~N~~T~~lD 150 (530)
T PF03098_consen 76 MQWG--QFIDHDITLTPDSSSCSDHPECFPIPIPPDDPFYRPF---VRCMPFTRSAPAPDPGQSCSLPREQINQATSYLD 150 (530)
T ss_dssp HHHH--HHHHHHH--BEBTTTHHCBTTB--EE--TTEHHHHHT---TSEE--B-B-BSSTSSS-SSSSTTBEE-STSSSS
T ss_pred HHHH--HHHhhhhccccccccccCCCCccccccCCCcccccCC---CCCcccccccccccCCCCCccchhhhccccceee
Confidence 9999 99999999988766 7 7999999999999998864 7999999999998877776779999999999999
Q ss_pred CCcCCCCCHHHHHhhhc-CCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCcccccchhHHHHHHHH
Q psy5584 494 GSFIYSTSEAWLNAMRS-FTNGSLATDASGKMPVKNTMRVPLFNNPVPHSLRTLSPERLYLLGDARSNQNPALLAFSILF 572 (2014)
Q Consensus 494 ~S~vYGs~~~~~~~LR~-~~~G~L~~~~~~~~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~Gd~R~ne~p~l~~lh~lf 572 (2014)
||+|||++++++++||+ +++|+|+++..+..+..+...+|. +.+.. . ....||++||.|+||||+|++|||+|
T Consensus 151 ~S~vYGs~~~~~~~LR~~~~~G~L~~~~~~~~~~~~~~~lp~-~~~~~-~----~~~~~f~~GD~R~ne~~~l~~lhtlf 224 (530)
T PF03098_consen 151 LSQVYGSSEEQARRLRSSFKGGKLKSDNGEFPPPNGGGLLPS-DDPPT-D----SGCRCFLAGDPRVNENPGLTALHTLF 224 (530)
T ss_dssp -HHHH-SSHHHHHHTBESSTTTEB--ETSSEEBBTTBES--B--TSCS-S----GHHGSB-TSSTTTTSBHHHHHHHHHH
T ss_pred cccccCCCHHHHHHhhcchhhhhhhcccccccccCCCCCCCC-Ccccc-c----ccccccccccccccchHHHHHHHHHH
Confidence 99999999999999999 999999983221112222223333 22111 0 01179999999999999999999999
Q ss_pred HhhhHHHHHHHHhhCCCCCchHhHHHHHhHHHHHHHHhhhhhhchhhhCCCC-----------CCCCCCCCCCCCCchhH
Q psy5584 573 FRWHNVIAAQIEDKHPELSDEEIFQKTRRLVVASLQNVIAYEYIPAFLGRSL-----------SPYRGYKMDVHPGISHV 641 (2014)
Q Consensus 573 ~R~HN~ia~~L~~~np~w~De~lFq~AR~iv~a~~Q~I~~~e~Lp~ilg~~~-----------~~~~~y~~~~~p~is~e 641 (2014)
+|||||||++|+++||+|+||+||||||+||+|+||||||+||||+|||.+. ..|++|++.++|+|++|
T Consensus 225 lReHNria~~L~~~np~w~de~lFqeAR~iv~a~~Q~Ivy~E~LP~llG~~~~~~~~~~~~~~g~~~~y~~~~~~~i~~E 304 (530)
T PF03098_consen 225 LREHNRIADELKKINPHWDDERLFQEARRIVIAQYQHIVYNEYLPALLGPEAMNKFLLPPLNNGYYKGYDPSVDPSISNE 304 (530)
T ss_dssp HHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHHHHTTHHHHHGHGGHHHHS-G----GCGTTS-TTS--S-BTT
T ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHhhhhHhhhhhhhcchhhhhhccccccccccccCCCCCCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999741 26789999999999999
Q ss_pred HHHhHhhhccccCCCcccccCcccCCCcCCCCCCCCCCCCCccCCCCCccccchhhhhhccccCCCCCccccCcccCCCC
Q psy5584 642 FQTAAFRFGHSLIPPGIYRRDEKCNFKPTVKGDPAPPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPGIYRRDEKCNFKP 721 (2014)
Q Consensus 642 F~~aa~RfgHs~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~r~ghs~~~~~~~~~~~~~~~~~ 721 (2014)
|++||||||||||++.+.+.+.++ .
T Consensus 305 Fa~aA~RfgHs~i~~~~~~~~~~~--~----------------------------------------------------- 329 (530)
T PF03098_consen 305 FAAAAYRFGHSMIPDTYDRWDENF--E----------------------------------------------------- 329 (530)
T ss_dssp H-HHHGGGGGGGS-SEEEEBTTTS--B-----------------------------------------------------
T ss_pred HHHHHHHhhheeehhhhhhccccC--C-----------------------------------------------------
Confidence 999999999999999776554410 0
Q ss_pred CCCCCcccccccCCCCCCCCCccccccccccCcc-cccCcCcHHHHHHHHhhccccccc--ccccHHhhhccCCCCCCCC
Q psy5584 722 TVKGDPAIRLCSNWWDSTNVDPAIRLCSNWWDST-NVMTYSTLEEILMGMASQLSEKED--AVLCSDIRDKLFGPNEFSR 798 (2014)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~ll~g~~~q~a~~~d--~~~~~~l~~~lf~~~~~~~ 798 (2014)
...+.++|.+.||++. .++.+++++.+++||++|++++.| ..+++++++++|++.+..+
T Consensus 330 ------------------~~~~~~~L~d~f~~~~~~~~~~~gid~ll~G~~~~~a~~~d~~~~~~~~l~~~lf~~~~~~~ 391 (530)
T PF03098_consen 330 ------------------IPEPSLPLSDAFFNPSNRLLEEGGIDPLLRGLASQPAQKVDNPRFLVDDLRNHLFGPRNVPG 391 (530)
T ss_dssp ------------------ETTSEEEGGGGBT-HH-HHHTTTCSHHHHHHHHHSEEEHHBTTBHSHHHHHTSEESTTSSSE
T ss_pred ------------------cccccccccccccCcchhhhhccchHHHHhHHhhCccccccHHHHhhhHhhcccccccCCcc
Confidence 0112378999999998 778889999999999999999999 9999999999999887776
Q ss_pred c-chhhhhhhhhccCCCCChHHHHHhcCCCCCCChhhhhhhccccccccchHHHHHHHHHHhCCCCCCcccccccccCCC
Q psy5584 799 R-DLGALNIMRGRDNGIADYNTVRSNYNLKKLKSWNDLEAVNPALFKEAHGKEILKRLKRSYGNSLDNIDLYIGGMLESH 877 (2014)
Q Consensus 799 ~-DL~alnIqRgRd~Glp~yn~~R~~~gl~~~~~f~dl~~~~~~~~~~~~~~~~~~~L~~lY~~~~ddiDL~~G~l~E~~ 877 (2014)
. ||+|+|||||||||||+||+||++|||+++++|+||++. +. + ++++++|+++|++ |||||||+|+|+|++
T Consensus 392 ~~DL~a~nIqRGRdhGLp~yn~~R~~cgl~~~~sf~dl~~~---~~--~--~~i~~~L~~~Y~~-vddvDL~vG~laE~~ 463 (530)
T PF03098_consen 392 SLDLAALNIQRGRDHGLPSYNDYREFCGLPPATSFEDLTDE---IS--D--EEIAAALRALYGH-VDDVDLWVGGLAEKP 463 (530)
T ss_dssp EEHHHHHHHHHHHHTTB-BHHHHHHHTT----SSHHHHHHH---HT--S--HHHHHHHHHHHSS-GGGSBHHHHHHHS-B
T ss_pred hhHHHHHHHHHHHHhCCchHHHHHHHhccCCCCCHHHhhhh---hh--H--HHHHHHHHHhccc-hhcccccceeeeecc
Confidence 4 999999999999999999999999999999999999532 32 2 7888999999995 999999999999999
Q ss_pred ---CCCChHHHHHHHHHHHHhhcCCcceeccCCCCCCCHHHHHHHHhcchhhHhhhcCCCCccccccccc
Q psy5584 878 ---EGPGPLFTNIILEQFTRLRDADRFWFENTENGMFTAAEVEAIRKITLWDIIVNATDIGADAIQKNVF 944 (2014)
Q Consensus 878 ---~~~Gpt~~~ii~~qf~rlr~gDRf~~en~~~~~ft~~ql~ei~~~tl~~iic~n~~~~~~~iq~~~F 944 (2014)
+.+|||++|||++||.|+|+|||||||| ++.||++|++||||+||++|||+|++. ++.||+|||
T Consensus 464 ~~G~~lGpt~~~Ii~~qf~~l~~gDRf~yen--~~~ft~~ql~~i~~~tla~iic~n~~~-~~~iq~~~F 530 (530)
T PF03098_consen 464 VPGGLLGPTFSCIIAEQFSRLRRGDRFWYEN--PGSFTPEQLEEIRKTTLARIICDNTDD-ITRIQPNAF 530 (530)
T ss_dssp STTSSSBHHHHHHHHHHHHHHHHTSTTGTTS--CTTCTHHHHHHHTTT-HHHHHHHHSTS--SEEESSTT
T ss_pred ccCCCCCHHHHhHHHHHHHHHHhcCcccccC--cCcCCHHHHHHHHHCCHHHHHHhcCCc-cccCCCCCC
Confidence 6899999999999999999999999994 489999999999999999999999963 699999998
No 3
>PLN02283 alpha-dioxygenase
Probab=100.00 E-value=1e-91 Score=891.85 Aligned_cols=474 Identities=21% Similarity=0.268 Sum_probs=373.9
Q ss_pred CcccccccccccccccccccccccccccccCCCCccccccccCCccccccccCCCCccccccccccCCcccCCCCCceee
Q psy5584 337 SKANLAVGTVDKMAVREWLHANHKRFVKIRLGPETCLHTVDRKGEKLRTVNFKNCDTVTIEESQFSTNREFQHQAKTSIE 416 (2014)
Q Consensus 337 ~~~~~~~gs~n~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~t~~~ 416 (2014)
-+.|++||||||+.+|.||.||++..+.+|+.. ...|.. +|+|+.|+... +.+..+.+++...|+|+
T Consensus 83 ~~yRt~DGscNNl~~P~~G~agt~f~R~v~p~~-------~~~~~~-----~P~pr~vs~~l-l~r~~f~~~~~~~n~~~ 149 (633)
T PLN02283 83 YPYRTADGKCNDPFNEGAGSQGTFFGRNMPPVD-------QKDKLL-----DPHPSVVATKL-LARKKFIDTGKQFNMIA 149 (633)
T ss_pred ccccCCCCCCcCCCCcccccCCCccccCCCccc-------cCCCCC-----CCCHHHHHHHH-HhhccccCCCCcchHHH
Confidence 357999999999999999999998777663321 112222 35667887533 23344556677899999
Q ss_pred eecCcccccccccccCCCCCCCCcceeeccCCCCccccCCCCCCceeecccCcccCCCCCCCCCcccccccccccccCCc
Q psy5584 417 DFYGDGQVVSSEIVMASESGCPIEMHEIEIEKCDEMYDKDCEGGKYIPFHRAGYDRSTGTSPNSPRQQINRVSSWIDGSF 496 (2014)
Q Consensus 417 ~~fg~gq~i~hDi~~~~~~~c~~~~~~i~i~~~Dp~~~~~~~~~~c~~f~Rs~~~~~~g~~~~~~r~q~N~~Ts~lD~S~ 496 (2014)
++|| |||+|||+.... ..+|.+|.+|... +..| +..||+|.||..++ +|.+. .+|+|+|++|||||||+
T Consensus 150 ~~w~--Qf~~HD~~~~~~---~~~~~~i~~p~~~---~~~~-~~~~~~f~RT~~~~-~~~~~-~~~~qiN~~Ts~lD~S~ 218 (633)
T PLN02283 150 ASWI--QFMIHDWIDHLE---DTQQIELTAPKEV---ASQC-PLKSFKFYKTKEVP-TGSPD-IKTGSLNIRTPWWDGSV 218 (633)
T ss_pred HHHH--HHHHhhhhhhcC---ccccccccCCccc---ccCC-cccccccccCCCCC-CCCCC-CCccccccccceeeccc
Confidence 9999 999999876422 1245677777322 1222 46899999998775 34443 49999999999999999
Q ss_pred CCCCCHHHHHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCcccccchhHHHHHHHHHhhh
Q psy5584 497 IYSTSEAWLNAMRSFTNGSLATDASGKMPVKNTMRVPLFNNPVPHSLRTLSPERLYLLGDARSNQNPALLAFSILFFRWH 576 (2014)
Q Consensus 497 vYGs~~~~~~~LR~~~~G~L~~~~~~~~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~Gd~R~ne~p~l~~lh~lf~R~H 576 (2014)
||||+++++++||+|++||||++.++.+|. ....|+++||.| |++|||++|||||+|||
T Consensus 219 IYGss~~~~~~LRtf~~GkLk~~~~~~l~~--------------------~~~~~~~~Gd~r-n~~pGL~~lhtLF~REH 277 (633)
T PLN02283 219 IYGSNEKGLRRVRTFKDGKLKISEDGLLLH--------------------DEDGIPISGDVR-NSWAGVSLLQALFVKEH 277 (633)
T ss_pred ccCCCHHHHHhhhCCCCCccCcCCCCCCCC--------------------CccCCcccCccc-cccHHHHHHHHHHHHHH
Confidence 999999999999999999999975433221 012489999999 89999999999999999
Q ss_pred HHHHHHHHhhCCCCCchHhHHHHHhHHHHHHHHhhhhhhchhhhCCCC-----------------------------CCC
Q psy5584 577 NVIAAQIEDKHPELSDEEIFQKTRRLVVASLQNVIAYEYIPAFLGRSL-----------------------------SPY 627 (2014)
Q Consensus 577 N~ia~~L~~~np~w~De~lFq~AR~iv~a~~Q~I~~~e~Lp~ilg~~~-----------------------------~~~ 627 (2014)
||||++|+++||+|+||+||||||+||||+||||||+||||.|||.+. .+|
T Consensus 278 NrIad~L~~~nP~w~DE~LFQeAR~Iv~A~~q~I~~~EylP~iLg~~~~~~~~~~~w~gllg~~~~~~~g~~~~~~~~g~ 357 (633)
T PLN02283 278 NAVCDALKEEYPDFDDEELYRHARLVTSAVIAKIHTIDWTVELLKTDTLLAGMRANWYGLLGKKFKDTFGHIGGPILSGL 357 (633)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHHHHheeeeeeeccHHhcCCcccccccccccccccchhhhhhcccccccccccc
Confidence 999999999999999999999999999999999999999999998642 123
Q ss_pred CCCC----CCCCCCchhHHHHhHhhhccccCCCcccccCcccCCCcCCCCCCCCCCCCCccCCCCCccccchhhhhhccc
Q psy5584 628 RGYK----MDVHPGISHVFQTAAFRFGHSLIPPGIYRRDEKCNFKPTVKGDPAPPYRGYKMDVHPGISHVFQTAAFRFGH 703 (2014)
Q Consensus 628 ~~y~----~~~~p~is~eF~~aa~RfgHs~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~r~gh 703 (2014)
.||+ +.++++|++||+ ||||| ||+||+.+.+.+..+.-.
T Consensus 358 ~gy~~~~~~~v~~~is~EF~-aaYR~-Hslip~~~~~~~~~~~~~----------------------------------- 400 (633)
T PLN02283 358 VGLKKPNNHGVPYSLTEEFT-SVYRM-HSLLPDHLILRDITAAPG----------------------------------- 400 (633)
T ss_pred cCCCccccCCCCcchhHHHH-HHHhh-hhcCCCceeccccccccc-----------------------------------
Confidence 4444 456777889995 68998 999988665443311000
Q ss_pred cCCCCCccccCcccCCCCCCCCCcccccccCCCCCCCCCccccccccccCc-ccccCcCcHHHHHHHHhhcccccccccc
Q psy5584 704 SLIPPGIYRRDEKCNFKPTVKGDPAIRLCSNWWDSTNVDPAIRLCSNWWDS-TNVMTYSTLEEILMGMASQLSEKEDAVL 782 (2014)
Q Consensus 704 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~ll~g~~~q~a~~~d~~~ 782 (2014)
.+.++. ....+.+.+.++.. .....+.|++.+++||..|++++++...
T Consensus 401 -------------------~~~~~~------------~~~~~~l~d~~~~~~~~~l~~~Gl~~ll~~l~~q~aga~~l~n 449 (633)
T PLN02283 401 -------------------ENKSPP------------LIEEIPMPELIGLKGEKKLSKIGFEKLMVSMGHQACGALELWN 449 (633)
T ss_pred -------------------cccccc------------ccccccHHHHHhhcccccccccCHHHHHHHHhhcchhcccccc
Confidence 000000 00012222222211 1223457899999999999999999888
Q ss_pred cHHhhhcc-----CCCCCCCCcchhhhhhhhhccCCCCChHHHHHhcCCCCCCChhhhhhhccccccccchHHHHHHHHH
Q psy5584 783 CSDIRDKL-----FGPNEFSRRDLGALNIMRGRDNGIADYNTVRSNYNLKKLKSWNDLEAVNPALFKEAHGKEILKRLKR 857 (2014)
Q Consensus 783 ~~~l~~~l-----f~~~~~~~~DL~alnIqRgRd~Glp~yn~~R~~~gl~~~~~f~dl~~~~~~~~~~~~~~~~~~~L~~ 857 (2014)
++.....+ +++.+..|+||+|+|||||||||||+||+||++|||++++|||||+. | ++++++|++
T Consensus 450 ~p~~l~~l~~~~~~g~~~~~g~DLaal~IqRgRDhGlp~YNefR~~~gL~~~~sFedlt~--------d--~e~~~~L~~ 519 (633)
T PLN02283 450 YPSWMRDLVPQDIDGEDRPDHVDMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLTD--------D--EEAIEVLRE 519 (633)
T ss_pred CcHHHHhhhhccccCCcccccccHHHHHHHhhhhcCCccHHHHHHHcCCCCCCCHHHcCC--------C--HHHHHHHHH
Confidence 87744444 45556679999999999999999999999999999999999999942 3 899999999
Q ss_pred HhCCCCCCcccccccccCCC---CCCChHHHHHHHHHHHHhhcCCcceeccCCCCCCCHHHHHHHHhc-chhhHhhhcCC
Q psy5584 858 SYGNSLDNIDLYIGGMLESH---EGPGPLFTNIILEQFTRLRDADRFWFENTENGMFTAAEVEAIRKI-TLWDIIVNATD 933 (2014)
Q Consensus 858 lY~~~~ddiDL~~G~l~E~~---~~~Gpt~~~ii~~qf~rlr~gDRf~~en~~~~~ft~~ql~ei~~~-tl~~iic~n~~ 933 (2014)
+|+++|||||||||+++|++ +.+|||+.||++.||.|+++||||||||++|+.||++|++||+++ ||++|||+|..
T Consensus 520 lY~~~vddVDL~VG~laE~~v~G~~vG~T~~~i~~~~a~r~~~gDRF~~en~np~~fT~~gl~~I~~t~tl~dvl~r~~p 599 (633)
T PLN02283 520 VYGDDVEKLDLLVGLMAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNFNEKTYTKKGLEWVNTTESLKDVIDRHYP 599 (633)
T ss_pred HhCCCHHHHHhhhhheecccCCCCCcCHHHHHHHHHHHHHHhcCCCCeEecCCcCcCCHHHHHHHHccCcHHHHHHHhCc
Confidence 99855999999999999998 679999999999999999999999999999999999999999998 99999999986
No 4
>KOG0039|consensus
Probab=100.00 E-value=3.3e-72 Score=728.80 Aligned_cols=598 Identities=34% Similarity=0.652 Sum_probs=511.0
Q ss_pred CCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC
Q psy5584 1386 DGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLD 1465 (2014)
Q Consensus 1386 dG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d 1465 (2014)
+| |+++||. ......+++++.+|+++|. ++|.++.+|+..++........ ....+++..++...++++.|.+
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANW-LSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhh-hhhhhhhhhHHHHHhhhhcccc
Confidence 56 9999998 5567888999999999998 9999999999999998766554 3667778888899999999999
Q ss_pred CCCcccHHHHHHHHHhCcccchhccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccchhHHH
Q psy5584 1466 SKDFLTYQDFKLMMRDYKGDFVAIGLDCKGAKQNFLDTSTNVARMTSFNIEPILDEDKSWFQLKLVPITTFLEENRQNIF 1545 (2014)
Q Consensus 1466 ~dG~Is~eEF~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 1545 (2014)
+.|.+.++++..++...+......++.+. ++.....+. .+...+.+..+...+...|++++|.+++
T Consensus 74 ~~~y~~~~~~~~ll~~~~~~~~~~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQIPTLLFAILLSFA----NLSLLLSQP----------LKPTRRKPLLRNLVRMGAFLPNLWLRVW 139 (646)
T ss_pred ccceeeecchhHHHHhchHHHHHHHHHHH----HHHhhhccc----------cccccccccchheeeeeeeeccceEeee
Confidence 99999999999999999877766555432 111110000 0011133344456777789999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccccc-------h-------------------hhHHHHHhc---------cCCCchhhHHH
Q psy5584 1546 YLFIFYVITIALFVERFIHYSFLA-------E-------------------HTDLRHIMG---------QYIPLDSHIQF 1590 (2014)
Q Consensus 1546 ~l~~~~~i~~~l~~~~~~~~~~~~-------~-------------------~~~~~~~~G---------~~i~~d~~~~~ 1590 (2014)
.+++|+++++++|.|++++|.... . ...+|.+.+ .++|+|+.+.|
T Consensus 140 ~~~~~l~~~~~lf~~~~~~y~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~f 219 (646)
T KOG0039|consen 140 VLFLWLGLNVGLFTWRFLQYVYLGTRHILGLCLALARGSAETLNFNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNF 219 (646)
T ss_pred eehHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeeeccccccchhhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchH
Confidence 999999999999999999885432 0 012333333 66999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCcccccccccccccCCCCCCCcceeeeccccchhHHHHHHHHHHHHHHhhhH
Q psy5584 1591 HKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGITFWLFQTITGITGVLLFVIMVLIFVFAHP 1670 (2014)
Q Consensus 1591 Hr~ig~~~~~~~~lH~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~g~tGii~~~~l~im~v~S~~ 1670 (2014)
|+++|.....++.+|.++|.++++....+......|.+..- ...+..+.|...+..++||+++++++++|+++|++
T Consensus 220 h~l~g~~~~~~~~~H~w~~~~~~~~~~ih~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~ 295 (646)
T KOG0039|consen 220 HKLVALTIAVFILLHIWLHLVNFFPFLVHGLEYTISLASEL----FFLPKTYKWLLLGVVGLTGVILLILMLIMFVLSLP 295 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh----cccchhhhhhhcCCCcchhHHHHHHHHHHHHHhhH
Confidence 99999999999999999999998876655544444333221 12244567778889999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHhhccccccCCCcchhhhhHHHHHHHHHHhhhheeeeeEeEEEEEEEcCCCEEEEE
Q psy5584 1671 TIRKKAYNWFWLAHSLYVFLFALMLIHGLARITGPPRFWIYFIGPGVVFILDKVVSLRTKYMALDILETELLPSDVIKIR 1750 (2014)
Q Consensus 1671 ~iRr~~Ye~F~~~H~l~~~~~vl~~~H~~~~l~~~p~~~~~~~~~~~l~~~drl~r~~r~~~~~~v~~v~~l~~~v~~l~ 1750 (2014)
++||+.||+||++|++++++|+++++|+...+.+ .+|+|+++|+++|++||++|+.|+...++++++..+|+++++|.
T Consensus 296 ~fRR~~~e~F~ytH~l~~v~~illi~hg~~~~~~--~~w~~~~~p~~ly~~dR~~r~~r~~~~~~i~~~~llp~~vi~L~ 373 (646)
T KOG0039|consen 296 FFRRRFYEAFWYTHHLYIVFYILLIIHGGFRLLG--TTWMYIAVPVLLYILDRILRFLRSQKNVKIAKVVLLPSDVLELI 373 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--cchhHHHHHHHHHHHHHHHHHHHHhcCceEEEEEEcCCCeEEEE
Confidence 9999999999999999999999999999766654 77999999999999999999999888899999999999999999
Q ss_pred EecCCCCcccCCCEEEEEecCCCCCcccccccCCCCCCCeEEEEEEecCCccHHHHhhhcc-CCCCCC---CCCcEEEEE
Q psy5584 1751 FYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKAQGPWTWKLRNYFDP-CNFNAS---EDQPKIRLE 1826 (2014)
Q Consensus 1751 ~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~~~l~l~Ir~~G~~T~~L~~~~~~-~~~~~~---~~~~~v~Id 1826 (2014)
+++|+.++|+||||++|+||+++.+|||||||+|+|+++++++|||+.|+||++|++.+.. .+..+. ...+++.||
T Consensus 374 ~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~dd~lsvhIk~~g~wT~~L~~~~~~~~~~~~~~~~~~~~~i~Id 453 (646)
T KOG0039|consen 374 MSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPEDDFLSVHIKALGDWTEKLRNAFSEVSQPPESDKSYPFPKILID 453 (646)
T ss_pred EeCCCCCCCCCCCEEEEECccccccccCCceeecCCCCCEEEEEEEecCcHHHHHHHHHhhhcccccccccccCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999884 322111 137899999
Q ss_pred CCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCC--------CCcCccEEEEEEEeCCcccHHHHHHHHH
Q psy5584 1827 GPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRY--------SGVSCKKVYFLWICPSHKHFEWFIDVLR 1898 (2014)
Q Consensus 1827 GPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~--------~~~~~~kV~liW~~R~~~~l~w~~~~L~ 1898 (2014)
||||.+.+++.+|++++|||||+||||++|++++++.+.+.++. ....+++++|+|++|++++++||.+.+.
T Consensus 454 GPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~ 533 (646)
T KOG0039|consen 454 GPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLT 533 (646)
T ss_pred CCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHHHHHHH
Confidence 99999999999999999999999999999999999998776632 1357899999999999999999999999
Q ss_pred HHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEE
Q psy5584 1899 DVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGV 1978 (2014)
Q Consensus 1899 ~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V 1978 (2014)
++++.+..+.+++++|+|+..++.|.++++++++++..+..++.|+.+|++..+|+|||||++++++++..+++.. ++|
T Consensus 534 ~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~~~-vgV 612 (646)
T KOG0039|consen 534 EVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPNVR-VGV 612 (646)
T ss_pred HHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeCCCCCHHHHHHHHHhhCCCce-EEE
Confidence 9998877778999999999999999999999999999988899999999999999999999999999999998744 999
Q ss_pred EEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecC
Q psy5584 1979 FSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013 (2014)
Q Consensus 1979 ~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~F 2013 (2014)
|+||||+|++.+++.|.+.+.... +.+.+|+|+|
T Consensus 613 f~CGp~~l~~~~~~~~~~~~~~~~-~~~~f~~E~F 646 (646)
T KOG0039|consen 613 FSCGPPGLVKELRKLCNDFSSSTA-TRFEFHKENF 646 (646)
T ss_pred EEeCCHHHHHHHHHHHHhcccccC-ceeeeeeccC
Confidence 999999999999999999988744 9999999998
No 5
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=3.1e-50 Score=516.43 Aligned_cols=307 Identities=23% Similarity=0.442 Sum_probs=252.6
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccccccccccccCCCCCCCcceeeeccccchhHHHHHHH
Q psy5584 1580 QYIPLDSHIQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGITFWLFQTITGITGVLLFV 1659 (2014)
Q Consensus 1580 ~~i~~d~~~~~Hr~ig~~~~~~~~lH~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~g~tGii~~~ 1659 (2014)
+|++|++++.||||+|+++++++++|+++|++.|+..+.. .....|......+++|+++++
T Consensus 181 tG~s~e~~i~yHRWlGri~~~la~iH~i~y~i~~~~~~~~-------------------~~~~~w~~~~~~~~~GviA~v 241 (699)
T PLN02631 181 VGLTSESSIKYHIWLGHVSNFLFLVHTVVFLIYWAMINKL-------------------METFAWNPTYVPNLAGTIAMV 241 (699)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-------------------hhhhhcccccchHHHHHHHHH
Confidence 8999999999999999999999999999999877542110 001122212234578999999
Q ss_pred HHHHHHHhhhHHHhhhhhhHHHHHHHHHHHHHHHHHhhccccccCCCcchh-hhhHHHHHHHHHHhhhheeeeeEeEEEE
Q psy5584 1660 IMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHGLARITGPPRFWI-YFIGPGVVFILDKVVSLRTKYMALDILE 1738 (2014)
Q Consensus 1660 ~l~im~v~S~~~iRr~~Ye~F~~~H~l~~~~~vl~~~H~~~~l~~~p~~~~-~~~~~~~l~~~drl~r~~r~~~~~~v~~ 1738 (2014)
++++|+++|++++||++||+|+++|++++++++++++|.. ..|. |+++++++|++||++|+.|.....++++
T Consensus 242 ~~~lm~~~Sl~~~RRr~YE~F~~~Hillaifiv~~~~H~g-------~~w~~~~~~~ialw~~DR~lR~~r~~~~~~lv~ 314 (699)
T PLN02631 242 IGIAMWVTSLPSFRRKKFELFFYTHHLYGLYIVFYVIHVG-------DSWFCMILPNIFLFFIDRYLRFLQSTKRSRLVS 314 (699)
T ss_pred HHHHHHHhccHHHHhhhhhHHHHHHHHHHHHHHheEEecC-------CchHHHHHHHHHHHHHHHHHHHHHHhceEEEEE
Confidence 9999999999999999999999999998888788889972 1244 4567788999999999988777788889
Q ss_pred EEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCC--CCeEEEEEEecCCccHHHHhhhccCCCCC
Q psy5584 1739 TELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPH--ENFLSCHIKAQGPWTWKLRNYFDPCNFNA 1816 (2014)
Q Consensus 1739 v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~--~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~ 1816 (2014)
++.++++++++++++|++++|+||||++|++|..+.+++|||||+|+|. ++.++|+||+.|+||++|++.+...
T Consensus 315 ~~~l~~d~l~l~~~~~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~~---- 390 (699)
T PLN02631 315 ARILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSSS---- 390 (699)
T ss_pred EEEeCCCeEEEEEEcCCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhcC----
Confidence 9999999999999988889999999999999998899999999999984 5789999999999999999877542
Q ss_pred CCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHH
Q psy5584 1817 SEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDV 1896 (2014)
Q Consensus 1817 ~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~ 1896 (2014)
....++.|+||||.+..+..+++++|+||||+||||++|++++++.+.... ..+.++|+|+|++|+.+++. +.|+
T Consensus 391 -g~~i~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~---~~~~~~V~Li~~vR~~~dL~-f~de 465 (699)
T PLN02631 391 -IDSLEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNP---STKLPDVLLVCSFKHYHDLA-FLDL 465 (699)
T ss_pred -CCeeEEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhccccc---ccCCCcEEEEEEECCHHHhh-hHHH
Confidence 124589999999987655667899999999999999999999998764322 22345899999999999998 7788
Q ss_pred HHHHHh---cCCCCcEEEEEEEcCCCCC
Q psy5584 1897 LRDVEK---KDVTNVLEIHIFITQFFHK 1921 (2014)
Q Consensus 1897 L~~l~~---~~~~~~l~v~iyvT~~~~~ 1921 (2014)
|..+.. .-.+.++++++|+|++.++
T Consensus 466 L~~l~~~~~~l~~~ni~i~iyVTR~~~~ 493 (699)
T PLN02631 466 IFPLDISVSDISRLNLRIEAYITREDKK 493 (699)
T ss_pred HhhhccchhhhhcCceEEEEEEcCCCCC
Confidence 876421 1113489999999996543
No 6
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=2.7e-49 Score=510.54 Aligned_cols=407 Identities=22% Similarity=0.395 Sum_probs=311.1
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccccccccccccCCCCCCCcceeeeccccchhHHHHHHH
Q psy5584 1580 QYIPLDSHIQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGITFWLFQTITGITGVLLFV 1659 (2014)
Q Consensus 1580 ~~i~~d~~~~~Hr~ig~~~~~~~~lH~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~g~tGii~~~ 1659 (2014)
+|+|||+++.||||+|+++++++++|+++|++.|+...... .....|.......++|+++++
T Consensus 184 tGis~e~~i~fHrWlGr~~~llallH~i~~~i~w~~~~~~~------------------~~~~~w~~~~~~~~~G~IAlv 245 (722)
T PLN02844 184 LGIQFEASVRYHVWLGTSMIFFATVHGASTLFIWGISHHIQ------------------DEIWKWQKTGRIYLAGEIALV 245 (722)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh------------------hhhhhhccCcchhhhHHHHHH
Confidence 79999999999999999999999999999988775421100 011123222223478999999
Q ss_pred HHHHHHHhhhHHHhhhhhhHHHHHHHHHHHHHHHHHhhccccccCCCcchhhhhHHHHHHHHHHhhhheeeeeEeEEEEE
Q psy5584 1660 IMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHGLARITGPPRFWIYFIGPGVVFILDKVVSLRTKYMALDILET 1739 (2014)
Q Consensus 1660 ~l~im~v~S~~~iRr~~Ye~F~~~H~l~~~~~vl~~~H~~~~l~~~p~~~~~~~~~~~l~~~drl~r~~r~~~~~~v~~v 1739 (2014)
++++|+++|++++||++||+|+++|++++++++++++|+. +..++|+++++++|++||++|+.+......++++
T Consensus 246 ~l~iL~itSl~~iRR~~YElF~~~H~L~ivflv~~~~H~~------~~~~~~v~~~i~L~~~DRllR~~~s~~~~~vvs~ 319 (722)
T PLN02844 246 TGLVIWITSLPQIRRKRFEIFYYTHHLYIVFLIFFLFHAG------DRHFYMVFPGIFLFGLDKLLRIVQSRPETCILSA 319 (722)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHhhhHhhc------CcchhhhHHHHHHHHHHHHhheEEEeeeEEEEEE
Confidence 9999999999999999999999999999888889999983 2334577888999999999999887666667788
Q ss_pred EEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCC--CCCeEEEEEEecCCccHHHHhhhccCCCCC-
Q psy5584 1740 ELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAP--HENFLSCHIKAQGPWTWKLRNYFDPCNFNA- 1816 (2014)
Q Consensus 1740 ~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p--~~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~- 1816 (2014)
+..+++++++++++|..++|+||||++|++|..+.++||||||+|+| +++.++++||+.|+||++|++.+......+
T Consensus 320 ~~~~~~~v~l~i~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~~g~ 399 (722)
T PLN02844 320 RLFPCKAIELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELDSET 399 (722)
T ss_pred EEecCCEEEEEEECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhccCCC
Confidence 88899999999999989999999999999999988999999999987 467899999999999999998765431100
Q ss_pred -CCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHH
Q psy5584 1817 -SEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFID 1895 (2014)
Q Consensus 1817 -~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~ 1895 (2014)
.....++.|+||||.+..+...+++++||||||||||++|+++++..+.+.. ....++|+|+|++|+.+++.|+.+
T Consensus 400 ~~~~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~---~~~~~~V~LIw~vR~~~dL~~~de 476 (722)
T PLN02844 400 NQMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSR---YRFPKRVQLIYVVKKSQDICLLNP 476 (722)
T ss_pred CcccceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccc---cCCCCcEEEEEEECCHHHhhhHHH
Confidence 0112589999999998766667899999999999999999999998753211 123468999999999999998877
Q ss_pred HHHHHHhc-CCCCcEEEEEEEcCCCCCCC------------------cchh--hh-------------------------
Q psy5584 1896 VLRDVEKK-DVTNVLEIHIFITQFFHKFD------------------LRTT--ML------------------------- 1929 (2014)
Q Consensus 1896 ~L~~l~~~-~~~~~l~v~iyvT~~~~~~d------------------~~~~--~~------------------------- 1929 (2014)
+..++.+. .....+++++|+|++..... .... ++
T Consensus 477 l~~~l~~~~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~lw~~~~~~~s~~~f~~~~~ 556 (722)
T PLN02844 477 ISSLLLNQSSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNFSTKCSRYAIHGLESFLWMAAMVALTSITFLVFLI 556 (722)
T ss_pred HHHHhHHhHHHhcCceEEEEECCCCCCCCchhhHhhccchhhhcCCCCCCCceEEeCCCchHHHHHHHHHHHHHHHHHHH
Confidence 65544321 12247899999998644321 0000 00
Q ss_pred -----hhhhcccc--------------c-----c-------------------------------ccccc---c------
Q psy5584 1930 -----YICENHFQ--------------R-----L-------------------------------SKSSM---F------ 1945 (2014)
Q Consensus 1930 -----~~~e~~~~--------------~-----~-------------------------------~~~~~---~------ 1945 (2014)
++..+|.. . . .+.+. -
T Consensus 557 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (722)
T PLN02844 557 GLNHIFIPSEHKSHSGVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITCSTFVAIILRWRRLKKEIPRVSQKQGIKPE 636 (722)
T ss_pred HHheEEeccccccccchhcccccccccccCCCchHHHHHHHHHHHHHHheecceEeEeeeccccccCCccccccccCCCC
Confidence 01000100 0 0 00000 0
Q ss_pred -----cC----cccccccC-CCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhc-----CCC--CCeEEE
Q psy5584 1946 -----TG----LKAVNHFG-RPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNK-----GRK--LPYFIH 2008 (2014)
Q Consensus 1946 -----tg----l~~~~~~G-RPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~-----~~g--~~~~~~ 2008 (2014)
.+ ....+|+| |||+++++..+.+...+ .+++|.+|||++|..+|.+.|+..+. ..+ -+.|.+
T Consensus 637 ~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~~-~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~ 715 (722)
T PLN02844 637 EGSMEKRGPVLEEHEIHFGGRPNFQDIFSKFPKETRG-SDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKRKMYFSF 715 (722)
T ss_pred CccccccccccccceeecCCCCCHHHHHHHhhhhccC-CceeEEEeCchHHHHHHHHHHHhcccccccccccccCCceee
Confidence 00 01346887 99999999999998876 89999999999999999999999876 211 278999
Q ss_pred EEecCC
Q psy5584 2009 HFENFG 2014 (2014)
Q Consensus 2009 h~E~Fg 2014 (2014)
|.-+|+
T Consensus 716 hs~~f~ 721 (722)
T PLN02844 716 HSLNFT 721 (722)
T ss_pred eecccC
Confidence 998885
No 7
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=1.2e-49 Score=512.43 Aligned_cols=353 Identities=20% Similarity=0.384 Sum_probs=276.5
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhh-hccc---c---c--h------hhHHHHHhc-----------------------
Q psy5584 1538 EENRQNIFYLFIFYVITIALFVERFI-HYSF---L---A--E------HTDLRHIMG----------------------- 1579 (2014)
Q Consensus 1538 ~~~r~~~~~l~~~~~i~~~l~~~~~~-~~~~---~---~--~------~~~~~~~~G----------------------- 1579 (2014)
.=.+.+++++++|+++.++-|+--.+ .+.. . . + ...++.|+|
T Consensus 118 ~vt~~e~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vg~R~Gila~~~lpll~l~~~Rnn~L~~l 197 (702)
T PLN02292 118 IVTVTEVMFLAMFMALLLWSLANYMYNTFVTITPQSAATDGESLWQARLDSIAVRLGLVGNICLAFLFYPVARGSSLLAA 197 (702)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 44789999998888866655542111 0110 0 0 0 133556666
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccccccccccccCCCCCCCcceeeeccccchhHHHHHHH
Q psy5584 1580 QYIPLDSHIQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGITFWLFQTITGITGVLLFV 1659 (2014)
Q Consensus 1580 ~~i~~d~~~~~Hr~ig~~~~~~~~lH~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~g~tGii~~~ 1659 (2014)
+|+||++++.||||+|+++++++++|+++|++.|..... . .....|......+++|+++++
T Consensus 198 tG~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~~~~~~~--~-----------------~~~~~w~~~~~~~i~G~iAlv 258 (702)
T PLN02292 198 VGLTSESSIKYHIWLGHLVMTLFTSHGLCYIIYWISMNQ--V-----------------SQMLEWDRTGVSNLAGEIALV 258 (702)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--h-----------------hhhhhccccchHHHHHHHHHH
Confidence 899999999999999999999999999999988754211 0 011123223345689999999
Q ss_pred HHHHHHHhhhHHHhhhhhhHHHHHHHHHHHHHHHHHhhccccccCCCcchhhhhHHHHHHHHHHhhhheeeeeEeEEEEE
Q psy5584 1660 IMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHGLARITGPPRFWIYFIGPGVVFILDKVVSLRTKYMALDILET 1739 (2014)
Q Consensus 1660 ~l~im~v~S~~~iRr~~Ye~F~~~H~l~~~~~vl~~~H~~~~l~~~p~~~~~~~~~~~l~~~drl~r~~r~~~~~~v~~v 1739 (2014)
++++|+++|++++||++||+|+++|++++++++++++|+.. .+..|.++++++|++||++|+.+.+..++++++
T Consensus 259 ~~~il~v~Sl~~iRR~~YE~F~~~HiL~~v~~v~~~~H~~~------~~~~~~~~~i~l~~~DR~lR~~r~~~~~~Iv~~ 332 (702)
T PLN02292 259 AGLVMWATTYPKIRRRFFEVFFYTHYLYIVFMLFFVFHVGI------SFALISFPGFYIFLVDRFLRFLQSRNNVKLVSA 332 (702)
T ss_pred HHHHHHHHhhHHHHhcccHhHHHHHHHHHHHHeeeehhhhh------HHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEE
Confidence 99999999999999999999999999998888888999731 233455667789999999999887888899999
Q ss_pred EEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCC--CCeEEEEEEecCCccHHHHhhhccCCCCCC
Q psy5584 1740 ELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPH--ENFLSCHIKAQGPWTWKLRNYFDPCNFNAS 1817 (2014)
Q Consensus 1740 ~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~--~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~ 1817 (2014)
+.++++++++++++|+.+.|+||||++|++|..+.+++|||||+|+|. ++.++++||+.|+||++|++.++.++.
T Consensus 333 ~~l~~dvv~L~~~~~~~~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~gd~--- 409 (702)
T PLN02292 333 RVLPCDTVELNFSKNPMLMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSSSDQ--- 409 (702)
T ss_pred EEcCCCEEEEEEEcCCCCCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCCCCc---
Confidence 999999999999998889999999999999998889999999999873 578999999999999999998765431
Q ss_pred CCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHH
Q psy5584 1818 EDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVL 1897 (2014)
Q Consensus 1818 ~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L 1897 (2014)
....++.|+||||.+..+...++++++||||+||||++|++++++++.... ....++|+|+|++|+.+++.|.....
T Consensus 410 i~~~~V~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~---~~~~~~V~LIw~vR~~~Dl~~ld~l~ 486 (702)
T PLN02292 410 IDRLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTE---TCKIPKITLICAFKNSSDLSMLDLIL 486 (702)
T ss_pred cccceEEEECCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccc---cCCCCcEEEEEEECCHHHhhHHHHHH
Confidence 224689999999988755667899999999999999999999998763211 12346899999999999888654444
Q ss_pred HHHH---hcCCCCcEEEEEEEcCCCCC
Q psy5584 1898 RDVE---KKDVTNVLEIHIFITQFFHK 1921 (2014)
Q Consensus 1898 ~~l~---~~~~~~~l~v~iyvT~~~~~ 1921 (2014)
.+++ +......+++++|+|++.+.
T Consensus 487 ~e~~~~~~l~~~~~~~i~iyvTr~~~~ 513 (702)
T PLN02292 487 PTSGLETELSSFIDIQIKAFVTREKEA 513 (702)
T ss_pred HhhhhHHHHhhcCCceEEEEEeCCCCC
Confidence 4332 22234589999999996543
No 8
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-37 Score=347.13 Aligned_cols=357 Identities=22% Similarity=0.321 Sum_probs=244.7
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccccccccccccCCCCCCC-cceeeeccccchhHHHHHH
Q psy5584 1580 QYIPLDSHIQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKP-GITFWLFQTITGITGVLLF 1658 (2014)
Q Consensus 1580 ~~i~~d~~~~~Hr~ig~~~~~~~~lH~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~w~~~~~~g~tGii~~ 1658 (2014)
.+-++|..+.+|||.|++++++.+.|-+...++-.-. .+... + ......+ ....|....--|-++..++
T Consensus 68 ~~~GlD~~Y~~HK~~sIlailL~l~H~~~~~~g~w~~-~~~l~-----~----k~a~v~~~l~~~~~s~~elG~~~~yi~ 137 (438)
T COG4097 68 WFNGLDKIYRFHKYTSILAILLLLAHNFILFIGNWLT-LQLLN-----F----KPAPVKPSLAGMWRSAKELGEWSAYIF 137 (438)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHcCcchh-ccccc-----c----cccccchhhhhhhHHHHHHHHHHHHHH
Confidence 4558999999999999999999999998754432110 11100 0 0000000 0011221111222233333
Q ss_pred HHHHHHHHhhhHHHhhhhhhHHHHHHHHHHHHHHHHHhhcccc----ccCCCcchhhhhHHHHHHHHHHhhh-----hee
Q psy5584 1659 VIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHGLAR----ITGPPRFWIYFIGPGVVFILDKVVS-----LRT 1729 (2014)
Q Consensus 1659 ~~l~im~v~S~~~iRr~~Ye~F~~~H~l~~~~~vl~~~H~~~~----l~~~p~~~~~~~~~~~l~~~drl~r-----~~r 1729 (2014)
+.++++ + ...-+..||.|.++|.+++++|++..+|.... +...|.+-++..+.++++.+.-++. .+.
T Consensus 138 ~~lllV--~--~l~~~i~Ye~WR~~H~lm~vvYilg~~H~~~l~~~~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s 213 (438)
T COG4097 138 IGLLLV--W--RLWLNIGYENWRIAHRLMAVVYILGLLHSYGLLNYLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRS 213 (438)
T ss_pred HHHHHH--H--HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhcchhHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 222221 1 23456789999999999999999999998532 1222322122222222222222211 233
Q ss_pred eeeEeEEEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCC-CCcccccccCCCCCCCeEEEEEEecCCccHHHHhh
Q psy5584 1730 KYMALDILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFK-NAAYHSFTLTSAPHENFLSCHIKAQGPWTWKLRNY 1808 (2014)
Q Consensus 1730 ~~~~~~v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~-~~e~HPFTIaS~p~~~~l~l~Ir~~G~~T~~L~~~ 1808 (2014)
.++...|+.++..+.++.+++.....++.|+|||+.+|.|+... ....||||||++.+..+++|.||+.||+|+.|++.
T Consensus 214 ~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~sel~FsIK~LGD~Tk~l~dn 293 (438)
T COG4097 214 FPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACSHEGSELRFSIKALGDFTKTLKDN 293 (438)
T ss_pred cccceEEechhhcCcchheeecccCCcccccCCceEEEEeccccccCCCCCeeeeeCCCCceEEEEehhhhhhhHHHHHh
Confidence 45778888899999999999998888888999999999998664 46789999999987788999999999999999998
Q ss_pred hccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcc
Q psy5584 1809 FDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHK 1888 (2014)
Q Consensus 1809 ~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~ 1888 (2014)
++.+. ++.||||||.+..+- .-++.|+||||||||||+|+++.+..+.. .+.|+|++++|+.+
T Consensus 294 Lk~G~--------k~~vdGPYG~F~~~~-g~~~QVWIAGGIGITPFis~l~~l~~~~s--------~~~V~L~Y~~~n~e 356 (438)
T COG4097 294 LKVGT--------KLEVDGPYGKFDFER-GLNTQVWIAGGIGITPFISMLFTLAERKS--------DPPVHLFYCSRNWE 356 (438)
T ss_pred ccCCc--------eEEEecCcceeeccc-CCcccEEEecCcCcchHHHHHHhhccccc--------CCceEEEEEecCCc
Confidence 77664 999999999986432 22349999999999999999999987432 25899999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHH
Q psy5584 1889 HFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQK 1968 (2014)
Q Consensus 1889 ~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~ 1968 (2014)
+.. +.++|+++++.. +++.+|+.-++.+ |-.+.+++... .
T Consensus 357 ~~~-y~~eLr~~~qkl--~~~~lHiiDSs~~-----------------------------------g~l~~e~ler~--~ 396 (438)
T COG4097 357 EAL-YAEELRALAQKL--PNVVLHIIDSSKD-----------------------------------GYLDQEDLERY--P 396 (438)
T ss_pred hhH-HHHHHHHHHhcC--CCeEEEEecCCCC-----------------------------------CccCHHHhhcc--c
Confidence 987 789999998743 6788888333321 22222222111 1
Q ss_pred hCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecC
Q psy5584 1969 KHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013 (2014)
Q Consensus 1969 ~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~F 2013 (2014)
+++ ....||+|||++|++++++.+++. +++--.+|+|.|
T Consensus 397 ~~~--~~~sv~fCGP~~m~dsL~r~l~~~----~~~i~~~h~E~F 435 (438)
T COG4097 397 DRP--RTRSVFFCGPIKMMDSLRRDLKKQ----NVPITNFHYEHF 435 (438)
T ss_pred ccc--CcceEEEEcCHHHHHHHHHHHHHc----CCCHHHHHHHhc
Confidence 111 234699999999999999999998 444448999988
No 9
>KOG2408|consensus
Probab=100.00 E-value=7.3e-34 Score=367.55 Aligned_cols=244 Identities=29% Similarity=0.424 Sum_probs=197.6
Q ss_pred hhhH-HHHHHHHHHhCCccCCc--ccccccCcccccccccCHHHHHhhhCCCCChHHHHHHHHhhccCCC-----CcccH
Q psy5584 18 KLEH-FFREAYALTFGLKPGEK--RRRDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGD-----GRISF 89 (2014)
Q Consensus 18 ~l~~-~~~~~~~~~~~l~~~~~--~~~~~y~~~v~ps~~i~~~EF~~al~~rf~~s~~~~~f~~fD~d~~-----g~I~f 89 (2014)
+.|+ .|++-+-+-.| .+.+. |+..+|++++||+++ |||+.| ||||+|++++..|.++|.+.. ..+.+
T Consensus 425 ~~q~Ity~e~LP~ilG-~~~~~~~g~~~gY~~~~dp~Is---neFata-AfRfgHsli~~~~~~l~~~~~~~~~~~~l~~ 499 (719)
T KOG2408|consen 425 QVQHITYNEYLPKLLG-APLKVSLGGYRGYDPNVDPTIS---NEFATA-AFRFGHSLIPPFFQRLDENFQPIGEVVNLPL 499 (719)
T ss_pred HHhhhhHHhhhhhhcC-cccccCCccccCcCCCCChhhh---hhhhHH-HHhhhcccCchhhhhhcccCcccccccCchh
Confidence 4455 45555556666 33444 888999999999999 999999 999999999999999999885 36889
Q ss_pred HHHHhhhhhccCCCHHHHHHHH-----Hhhc-cCCCCccccHHHHHHHH---------HHH--HHhhcC---CCCC----
Q psy5584 90 QEFLDTVVLFSRGHTEDKLRII-----FDMC-DNDRNGVIDKGELAEML---------RSL--VEMART---SFPS---- 145 (2014)
Q Consensus 90 ~Efi~~~~~l~~~~~~d~l~~~-----f~~~-D~d~~G~Is~~El~~~L---------~dL--~niqrg---glp~---- 145 (2014)
++.++.+..+.+.+..|.+..+ .++. |.-.+ .|+++.+ .|| +||||| |+|+
T Consensus 500 ~~~~~~~~~i~~~ggid~llrGl~~~~~~~~~d~~~~-----~~i~~~lf~~~~~~~~~DL~ainIQRgRDhGlp~Yn~y 574 (719)
T KOG2408|consen 500 HDAFFNPWLILNEGGIDPLLRGLTTQPAKMPDDQLLN-----GEITERLFVKTDEDGELDLAALNIQRGRDHGLPPYNEY 574 (719)
T ss_pred hhhhcchhhhhhccChhHHHHHHHhchhhcccchhcC-----HHHHHHHhhhcCcccccchhhhhhhccccCCCCCHHHH
Confidence 9989888887665555556666 3555 44455 7777777 466 999999 9999
Q ss_pred ----C-CCchh-------HHHHHHHhhhhcCCCCcchhhhhhccccccCC---CCchhhhHHHHHHHHhhcccccccccC
Q psy5584 146 ----G-GAATT-------VVKIVLRGYYSYGNSLDNIDLYIGGMLESHEG---PGPLFTNIILEQFTRLRDADRFWFENT 210 (2014)
Q Consensus 146 ----~-~~a~~-------i~~~~l~~~~~~~~~~~~idl~~gg~~E~~~~---~gp~~~~i~~~qf~r~r~gdrf~~e~~ 210 (2014)
| +.+++ |+.+++++|..+|.+++|||||||+|+|+++. +||||+|||++||+|+|+||||||||.
T Consensus 575 R~~cgL~~~~s~edL~~~i~~~~~~kl~~lY~~~ddiDL~vG~~~E~~~~g~~vGPTl~cii~~Qf~r~r~gDRf~yen~ 654 (719)
T KOG2408|consen 575 RKFCGLSPATSFEDLSDEIEPEIINKLRTLYGTPDDIDLYVGLLLEKPLPGGLVGPTLACIIAEQFLRLRDGDRFWYENF 654 (719)
T ss_pred HHHcCCCCCCCHHHhhhhhhHHHHHHHHHhcCCchhhcccccccccccCCCceecccHHHHHHHHHHHHhccCceeecCC
Confidence 3 44444 88889999999999999999999999999953 999999999999999999999999996
Q ss_pred CCCCCCHHHHHHHHhccchhhhhccCccccccccc-ccccccCCCCCCCccccccCCCcCCCCCCCCCCCCcc
Q psy5584 211 ENGMFTAAEVEAIRKITLWDIIVNATDIGADAIQK-NVFFWNATDPCPQPAQLNASMMMPCSYLKGFDYFEPV 282 (2014)
Q Consensus 211 ~~~~ft~~ql~~i~~~~l~~i~c~~~~~~~~~~q~-~~f~~~~~~~c~~~~~~~~~~~~~c~~~~~~d~~~~~ 282 (2014)
+++.||++||+||||+||++|||+|++ ++..+++ ++|..+.. . +..++|++++.+|+-.|.
T Consensus 655 ~~~~Ft~~QL~ei~k~sLariiC~N~~-~~~~~~~~~~f~~~~~---------~-~~~~~c~~ip~~dl~~w~ 716 (719)
T KOG2408|consen 655 NPGVFTPEQLEEIRKVSLARIICDNGT-KITKVSRFDVFDFPDA---------P-NDPVPCSSIPGLDLNAWR 716 (719)
T ss_pred CCCccCHHHHHHHHHhhchheeecCCc-ccccccccCCcccccc---------C-CCCCCccccchhhhhhhh
Confidence 689999999999999999999999954 3566666 99987652 2 456777777777775543
No 10
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.96 E-value=2.4e-28 Score=282.04 Aligned_cols=205 Identities=31% Similarity=0.530 Sum_probs=167.1
Q ss_pred EEEEEcC-CCEEEEEEecCCCCcccCCCEEEEEecCC-CCCcccccccCCCCCC--CeEEEEEEecCCccHHHHhhhccC
Q psy5584 1737 LETELLP-SDVIKIRFYRPPNFTYHSGQWVRLACTAF-KNAAYHSFTLTSAPHE--NFLSCHIKAQGPWTWKLRNYFDPC 1812 (2014)
Q Consensus 1737 ~~v~~l~-~~v~~l~~~~p~~~~~~pGQyv~L~~p~~-~~~e~HPFTIaS~p~~--~~l~l~Ir~~G~~T~~L~~~~~~~ 1812 (2014)
++++.++ +++++|+++.|..+.|+||||++|++|.. +.+++|||||+|+|.+ +.++|+||..+++|+++.+.+...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 4677788 99999999998889999999999999988 7789999999999976 899999999956666676655421
Q ss_pred CCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHH
Q psy5584 1813 NFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEW 1892 (2014)
Q Consensus 1813 ~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w 1892 (2014)
. +...+.++.|+||||.+......++++|||||||||||++|++++++..... ....++|+|+|++|+.+++.|
T Consensus 82 ~--~~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~----~~~~~~v~l~w~~r~~~~~~~ 155 (210)
T cd06186 82 P--GGGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK----TSRTRRVKLVWVVRDREDLEW 155 (210)
T ss_pred c--CCCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc----cCCccEEEEEEEECCHHHhHH
Confidence 1 1134568999999999874556789999999999999999999999876421 113469999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCC
Q psy5584 1893 FIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSY 1972 (2014)
Q Consensus 1893 ~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~ 1972 (2014)
|.++|.+..+.... . ++++|+|+
T Consensus 156 ~~~~l~~~~~~~~~-~-~~~i~~T~------------------------------------------------------- 178 (210)
T cd06186 156 FLDELRAAQELEVD-G-EIEIYVTR------------------------------------------------------- 178 (210)
T ss_pred HHHHHHhhhhccCC-c-eEEEEEee-------------------------------------------------------
Confidence 99999751111111 1 67888764
Q ss_pred CCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecC
Q psy5584 1973 VSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013 (2014)
Q Consensus 1973 ~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~F 2013 (2014)
|++|||++|+++++.++.+. +...+.+|.|.|
T Consensus 179 -----v~~CGp~~~~~~~~~~~~~~----~~~~~~~~~e~f 210 (210)
T cd06186 179 -----VVVCGPPGLVDDVRNAVAKK----GGTGVEFHEESF 210 (210)
T ss_pred -----EEEECchhhccHHHHHHhhc----CCCceEEEeecC
Confidence 99999999999999999883 448999999998
No 11
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=99.96 E-value=2e-30 Score=335.85 Aligned_cols=234 Identities=29% Similarity=0.416 Sum_probs=177.3
Q ss_pred HhhHHHHHHHhhh-----hhhHHHHHHHHHHhCCccCCcccccccCcccccccccCHHHHHhhhCCCCChHHHHHHHHhh
Q psy5584 5 QLDRRQLRERRQK-----KLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIV 79 (2014)
Q Consensus 5 ~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~l~~~~~~~~~~y~~~v~ps~~i~~~EF~~al~~rf~~s~~~~~f~~f 79 (2014)
|-+|..+...=|. =|+.++++..|+.+.+.+...++...|++.++|++. +||++| |+||+|++++..+.+.
T Consensus 249 qeAR~iv~a~~Q~Ivy~E~LP~llG~~~~~~~~~~~~~~g~~~~y~~~~~~~i~---~EFa~a-A~RfgHs~i~~~~~~~ 324 (530)
T PF03098_consen 249 QEARRIVIAQYQHIVYNEYLPALLGPEAMNKFLLPPLNNGYYKGYDPSVDPSIS---NEFAAA-AYRFGHSMIPDTYDRW 324 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHGHGGHHHHS-G----GCGTTS-TTS--S-B---TTH-HH-HGGGGGGGS-SEEEEB
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcchhhhhhccccccccccccCCCCCCCCchh---HHHHHH-HHHhhheeehhhhhhc
Confidence 3345555555554 577788888899999988888888999999999999 999999 9999999999999999
Q ss_pred ccCC---CCcccHHHHHhhhh-hc-cCCCHHHHHHHH----HhhccCCCCccccHHHHHHHHH---------HH--HHhh
Q psy5584 80 DKDG---DGRISFQEFLDTVV-LF-SRGHTEDKLRII----FDMCDNDRNGVIDKGELAEMLR---------SL--VEMA 139 (2014)
Q Consensus 80 D~d~---~g~I~f~Efi~~~~-~l-~~~~~~d~l~~~----f~~~D~d~~G~Is~~El~~~L~---------dL--~niq 139 (2014)
+.+. .+.+.+.+.++++. .+ ..++.+..++.. .+..|. ...++ +++++.+. || +|||
T Consensus 325 ~~~~~~~~~~~~L~d~f~~~~~~~~~~~gid~ll~G~~~~~a~~~d~--~~~~~-~~l~~~lf~~~~~~~~~DL~a~nIq 401 (530)
T PF03098_consen 325 DENFEIPEPSLPLSDAFFNPSNRLLEEGGIDPLLRGLASQPAQKVDN--PRFLV-DDLRNHLFGPRNVPGSLDLAALNIQ 401 (530)
T ss_dssp TTTSBETTSEEEGGGGBT-HH-HHHTTTCSHHHHHHHHHSEEEHHBT--TBHSH-HHHHTSEESTTSSSEEEHHHHHHHH
T ss_pred cccCCcccccccccccccCcchhhhhccchHHHHhHHhhCccccccH--HHHhh-hHhhcccccccCCcchhHHHHHHHH
Confidence 9988 48899999999998 44 445555544333 344452 22333 77777773 88 9999
Q ss_pred cC---CCCC--------C-CCchh-------HH-HHHHHhhhhcCCCCcchhhhhhccccccC---CCCchhhhHHHHHH
Q psy5584 140 RT---SFPS--------G-GAATT-------VV-KIVLRGYYSYGNSLDNIDLYIGGMLESHE---GPGPLFTNIILEQF 196 (2014)
Q Consensus 140 rg---glp~--------~-~~a~~-------i~-~~~l~~~~~~~~~~~~idl~~gg~~E~~~---~~gp~~~~i~~~qf 196 (2014)
|| |||+ + +++++ ++ ++++++|++.|++++|||||+|||+|.++ .+||||+|||++||
T Consensus 402 RGRdhGLp~yn~~R~~cgl~~~~sf~dl~~~~~~~~i~~~L~~~Y~~vddvDL~vG~laE~~~~G~~lGpt~~~Ii~~qf 481 (530)
T PF03098_consen 402 RGRDHGLPSYNDYREFCGLPPATSFEDLTDEISDEEIAAALRALYGHVDDVDLWVGGLAEKPVPGGLLGPTFSCIIAEQF 481 (530)
T ss_dssp HHHHTTB-BHHHHHHHTT----SSHHHHHHHHTSHHHHHHHHHHHSSGGGSBHHHHHHHS-BSTTSSSBHHHHHHHHHHH
T ss_pred HHHHhCCchHHHHHHHhccCCCCCHHHhhhhhhHHHHHHHHHHhccchhcccccceeeeeccccCCCCCHHHHhHHHHHH
Confidence 99 9999 4 44444 34 34448899999999999999999999995 39999999999999
Q ss_pred HHhhcccccccccCCCCCCCHHHHHHHHhccchhhhhccCcccccccccccc
Q psy5584 197 TRLRDADRFWFENTENGMFTAAEVEAIRKITLWDIIVNATDIGADAIQKNVF 248 (2014)
Q Consensus 197 ~r~r~gdrf~~e~~~~~~ft~~ql~~i~~~~l~~i~c~~~~~~~~~~q~~~f 248 (2014)
.|+|+||||||||. +.||++||++||++||++|||+|++ +++.||+|||
T Consensus 482 ~~l~~gDRf~yen~--~~ft~~ql~~i~~~tla~iic~n~~-~~~~iq~~~F 530 (530)
T PF03098_consen 482 SRLRRGDRFWYENP--GSFTPEQLEEIRKTTLARIICDNTD-DITRIQPNAF 530 (530)
T ss_dssp HHHHHTSTTGTTSC--TTCTHHHHHHHTTT-HHHHHHHHST-S-SEEESSTT
T ss_pred HHHHhcCcccccCc--CcCCHHHHHHHHHCCHHHHHHhcCC-ccccCCCCCC
Confidence 99999999999965 9999999999999999999999997 5899999998
No 12
>PRK08051 fre FMN reductase; Validated
Probab=99.94 E-value=1.1e-25 Score=263.34 Aligned_cols=224 Identities=16% Similarity=0.232 Sum_probs=172.9
Q ss_pred eEeEEEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCC-CCCeEEEEEEecCC--ccHHHHhh
Q psy5584 1732 MALDILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAP-HENFLSCHIKAQGP--WTWKLRNY 1808 (2014)
Q Consensus 1732 ~~~~v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p-~~~~l~l~Ir~~G~--~T~~L~~~ 1808 (2014)
..++|++++.++++++.|+++.+..+.|+||||+.|.++.. ..|||||+|.| .++.++|+||..++ .+..+...
T Consensus 3 ~~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 3 LSCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPREKGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred eEEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHH
Confidence 46788999999999999999987788999999999998753 57999999999 47889999999753 56666655
Q ss_pred hccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcc
Q psy5584 1809 FDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHK 1888 (2014)
Q Consensus 1809 ~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~ 1888 (2014)
++.+ .+|.|.||||.+.......+++||||||+||||++|+++++..... .++|+|+|++|+.+
T Consensus 80 l~~G--------~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~--------~~~v~l~~g~r~~~ 143 (232)
T PRK08051 80 ILKD--------GEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQGP--------NRPITLYWGGREED 143 (232)
T ss_pred cCCC--------CEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCC--------CCcEEEEEEeccHH
Confidence 5443 3899999999987544456789999999999999999999986532 25899999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHH
Q psy5584 1889 HFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQK 1968 (2014)
Q Consensus 1889 ~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~ 1968 (2014)
++ +|.++|.++++.. ++++++..+++..+.. .|. .|+.. +. +.+
T Consensus 144 ~~-~~~~el~~l~~~~--~~~~~~~~~~~~~~~~-----------------------~~~-----~g~v~-~~----l~~ 187 (232)
T PRK08051 144 HL-YDLDELEALALKH--PNLHFVPVVEQPEEGW-----------------------QGK-----TGTVL-TA----VMQ 187 (232)
T ss_pred Hh-hhhHHHHHHHHHC--CCcEEEEEeCCCCCCc-----------------------ccc-----eeeeh-HH----HHh
Confidence 97 5889999988754 4677777666532111 110 13332 22 222
Q ss_pred hCCCCCeEEEEEeCChhhHHHHHHHH-HhhhcCCCCCeEEEEEecCC
Q psy5584 1969 KHSYVSKIGVFSCGPRPLTKSIMSAC-EEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1969 ~~~~~~~v~V~vCGP~~m~~~vr~a~-~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
......+..||+|||++|+++|++.+ .+. |++.-++|.|.|.
T Consensus 188 ~~~~~~~~~vyicGp~~m~~~v~~~l~~~~----G~~~~~i~~e~f~ 230 (232)
T PRK08051 188 DFGSLAEYDIYIAGRFEMAKIARELFCRER----GAREEHLFGDAFA 230 (232)
T ss_pred hccCcccCEEEEECCHHHHHHHHHHHHHHc----CCCHHHeeccccc
Confidence 22222345699999999999999999 787 7788899999995
No 13
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.94 E-value=9.7e-26 Score=262.88 Aligned_cols=220 Identities=20% Similarity=0.321 Sum_probs=173.6
Q ss_pred EEEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCC-CCeEEEEEEec--CCccHHHHhhhcc
Q psy5584 1735 DILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPH-ENFLSCHIKAQ--GPWTWKLRNYFDP 1811 (2014)
Q Consensus 1735 ~v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~-~~~l~l~Ir~~--G~~T~~L~~~~~~ 1811 (2014)
+|++++.+++++++++++.|..+.|+||||+.|.+|.. .+|||||+|.|. ++.++|+||.. |.+|+.|.+.++.
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l~~ 78 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELKE 78 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhccC
Confidence 57888999999999999988788999999999998753 489999999986 68899999998 7899999876554
Q ss_pred CCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHH
Q psy5584 1812 CNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFE 1891 (2014)
Q Consensus 1812 ~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~ 1891 (2014)
+. ++.|.||||.+......++++||||||+||||++|+++++..... .++|+|+|++|+.+++.
T Consensus 79 G~--------~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~--------~~~v~l~~~~r~~~~~~ 142 (224)
T cd06189 79 NG--------LVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGS--------KRPIHLYWGARTEEDLY 142 (224)
T ss_pred CC--------EEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcCC--------CCCEEEEEecCChhhcc
Confidence 43 899999999987544457899999999999999999999987632 24899999999999875
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCC
Q psy5584 1892 WFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHS 1971 (2014)
Q Consensus 1892 w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~ 1971 (2014)
+.++|+++++.. .+++++.++++..+.+ .|. .|+.. +.+.+...
T Consensus 143 -~~~~l~~l~~~~--~~~~~~~~~s~~~~~~-----------------------~g~-----~g~v~-----~~l~~~~~ 186 (224)
T cd06189 143 -LDELLEAWAEAH--PNFTYVPVLSEPEEGW-----------------------QGR-----TGLVH-----EAVLEDFP 186 (224)
T ss_pred -CHHHHHHHHHhC--CCeEEEEEeCCCCcCC-----------------------ccc-----cccHH-----HHHHhhcc
Confidence 678888887643 4688887777642211 110 02221 11222222
Q ss_pred CCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecC
Q psy5584 1972 YVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013 (2014)
Q Consensus 1972 ~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~F 2013 (2014)
......||+|||++|++++++.+.+. |++.-.+|+|.|
T Consensus 187 ~~~~~~v~vCGp~~m~~~~~~~l~~~----G~~~~~i~~e~f 224 (224)
T cd06189 187 DLSDFDVYACGSPEMVYAARDDFVEK----GLPEENFFSDAF 224 (224)
T ss_pred CccccEEEEECCHHHHHHHHHHHHHc----CCCHHHcccCCC
Confidence 22356799999999999999999887 788889999998
No 14
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.94 E-value=4.5e-25 Score=261.35 Aligned_cols=234 Identities=18% Similarity=0.295 Sum_probs=184.0
Q ss_pred eeeeEeEEEEEEEcCCCEEEEEEecCCC---CcccCCCEEEEEecCCC--CCcccccccCCCCCCCeEEEEEEec--CCc
Q psy5584 1729 TKYMALDILETELLPSDVIKIRFYRPPN---FTYHSGQWVRLACTAFK--NAAYHSFTLTSAPHENFLSCHIKAQ--GPW 1801 (2014)
Q Consensus 1729 r~~~~~~v~~v~~l~~~v~~l~~~~p~~---~~~~pGQyv~L~~p~~~--~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~ 1801 (2014)
+.+..++|++++.+++++.+|+|+.+.. +.|+||||+.|.++..+ ...+|||||+|.|.++.+.|+||.. |..
T Consensus 4 ~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~~~l~~~ik~~~~G~~ 83 (247)
T cd06184 4 RGFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKREPGGLV 83 (247)
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCCCeEEEEEEEcCCCcc
Confidence 4456788999999999999999998753 68999999999997544 4678999999999878999999988 999
Q ss_pred cHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEE
Q psy5584 1802 TWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFL 1881 (2014)
Q Consensus 1802 T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~li 1881 (2014)
|..|.+.++.+ .++.|.||||.+......++++||||||+||||++++++++..... .++|+|+
T Consensus 84 s~~l~~~~~~G--------d~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~--------~~~i~l~ 147 (247)
T cd06184 84 SNYLHDNVKVG--------DVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGP--------GRPVTFI 147 (247)
T ss_pred hHHHHhcCCCC--------CEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCC--------CCcEEEE
Confidence 99988744443 3899999999976544367899999999999999999999986522 2589999
Q ss_pred EEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHH
Q psy5584 1882 WICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSS 1961 (2014)
Q Consensus 1882 W~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~ 1961 (2014)
|++|+.+++. |.++|.++++.. .++++++++++....... ....+.||++...
T Consensus 148 ~~~r~~~~~~-~~~~l~~l~~~~--~~~~~~~~~s~~~~~~~~------------------------~~~~~~g~~~~~~ 200 (247)
T cd06184 148 HAARNSAVHA-FRDELEELAARL--PNLKLHVFYSEPEAGDRE------------------------EDYDHAGRIDLAL 200 (247)
T ss_pred EEcCchhhHH-HHHHHHHHHhhC--CCeEEEEEECCCCccccc------------------------ccccccCccCHHH
Confidence 9999999865 889999887653 578888888875221100 0011237777544
Q ss_pred HHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1962 FLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1962 il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
+.+. .. .....||+|||++|++++++.+++. |++.-.+|+|.|+
T Consensus 201 l~~~----~~-~~~~~v~icGp~~m~~~v~~~l~~~----G~~~~~i~~e~f~ 244 (247)
T cd06184 201 LREL----LL-PADADFYLCGPVPFMQAVREGLKAL----GVPAERIHYEVFG 244 (247)
T ss_pred Hhhc----cC-CCCCEEEEECCHHHHHHHHHHHHHc----CCCHHHeeeeccC
Confidence 3331 11 2356799999999999999999886 7888899999996
No 15
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.94 E-value=3.7e-25 Score=261.00 Aligned_cols=226 Identities=18% Similarity=0.200 Sum_probs=174.2
Q ss_pred EEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCC-CCCcccccccCCCCCCCeEEEEEEec--CCccHHHHhhhccC
Q psy5584 1736 ILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAF-KNAAYHSFTLTSAPHENFLSCHIKAQ--GPWTWKLRNYFDPC 1812 (2014)
Q Consensus 1736 v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~-~~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~T~~L~~~~~~~ 1812 (2014)
|++++.+++++++++++.|..+.|+||||+.|.+|.. +...+|||||+|.|.++.++|+||.. |.+|+.|.+ +..+
T Consensus 2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~i~~~i~~~~~G~~s~~l~~-l~~G 80 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFK-LKPG 80 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCCCeEEEEEEEecCCCCchHHhc-CCCC
Confidence 6778889999999999988778899999999999876 56788999999999889999999976 899999874 3333
Q ss_pred CCCCCCCCcEEEEE-CCCCCCCCCcC-CCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccH
Q psy5584 1813 NFNASEDQPKIRLE-GPFGGGNQDWY-KFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHF 1890 (2014)
Q Consensus 1813 ~~~~~~~~~~v~Id-GPyG~~~~~~~-~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l 1890 (2014)
..+.+. ||+|.+..+.. ..+++|||||||||||++++++++..... .++|+|+|++|+.+++
T Consensus 81 --------d~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~--------~~~v~l~~~~r~~~d~ 144 (241)
T cd06195 81 --------DTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWER--------FDKIVLVHGVRYAEEL 144 (241)
T ss_pred --------CEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCC--------CCcEEEEEccCCHHHh
Confidence 389999 99999764433 46899999999999999999999975422 2589999999999998
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHH---HHHHHHH
Q psy5584 1891 EWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMS---SFLKFVQ 1967 (2014)
Q Consensus 1891 ~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~---~il~~l~ 1967 (2014)
. +.++|.++.+. ....++++.++|+....+ | ..||.+-. +.+....
T Consensus 145 ~-~~~el~~l~~~-~~~~~~~~~~~s~~~~~~------------------------~-----~~g~v~~~l~~~~l~~~~ 193 (241)
T cd06195 145 A-YQDEIEALAKQ-YNGKFRYVPIVSREKENG------------------------A-----LTGRIPDLIESGELEEHA 193 (241)
T ss_pred h-hHHHHHHHHhh-cCCCEEEEEEECcCCccC------------------------C-----CceEhHHhhhhchhhHhh
Confidence 5 88999988764 135788888888753221 0 01333210 1111111
Q ss_pred HhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCe------EEEEEecC
Q psy5584 1968 KKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPY------FIHHFENF 2013 (2014)
Q Consensus 1968 ~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~------~~~h~E~F 2013 (2014)
..........||+|||++|++++++.+.+. |++. .++|.|.|
T Consensus 194 ~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~----G~~~~~~~~~~~~~~E~~ 241 (241)
T cd06195 194 GLPLDPETSHVMLCGNPQMIDDTQELLKEK----GFSKNHRRKPGNITVEKY 241 (241)
T ss_pred CCCCCcccCEEEEeCCHHHHHHHHHHHHHc----CCCccccCCCceEEEecC
Confidence 111111346799999999999999999988 6666 99999998
No 16
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.94 E-value=5.3e-25 Score=260.01 Aligned_cols=231 Identities=22% Similarity=0.290 Sum_probs=181.5
Q ss_pred HHhhhhee-----eeeEeEEEEEEEcCCCEEEEEEecCCC-CcccCCCEEEEEecCCCCCcccccccCCCCC--CCeEEE
Q psy5584 1722 DKVVSLRT-----KYMALDILETELLPSDVIKIRFYRPPN-FTYHSGQWVRLACTAFKNAAYHSFTLTSAPH--ENFLSC 1793 (2014)
Q Consensus 1722 drl~r~~r-----~~~~~~v~~v~~l~~~v~~l~~~~p~~-~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~--~~~l~l 1793 (2014)
|+.+|+.+ ....++|++++.+++++.+++++.|.. ..|+||||+.|.+|..+...+|||||+|.|. ++.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~ 82 (243)
T cd06216 3 DFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITL 82 (243)
T ss_pred hhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEE
Confidence 55555432 346788999999999999999998764 4799999999999866666789999999986 788999
Q ss_pred EEEec--CCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCC
Q psy5584 1794 HIKAQ--GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYS 1871 (2014)
Q Consensus 1794 ~Ir~~--G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~ 1871 (2014)
+||.. |.+|..|.+.++.+ .++.|.||||.+..+...++++||||||+||||++|+++++....
T Consensus 83 ~ik~~~~G~~s~~l~~~~~~G--------d~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~------ 148 (243)
T cd06216 83 TVKAQPDGLVSNWLVNHLAPG--------DVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG------ 148 (243)
T ss_pred EEEEcCCCcchhHHHhcCCCC--------CEEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC------
Confidence 99998 88999998754443 389999999997654444789999999999999999999997653
Q ss_pred CcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccc
Q psy5584 1872 GVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAV 1951 (2014)
Q Consensus 1872 ~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~ 1951 (2014)
..++|+++|++|+.+++ ++.++|.++++.. +++++++++|+. .
T Consensus 149 --~~~~i~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~s~~-~------------------------------- 191 (243)
T cd06216 149 --PTADVVLLYYARTREDV-IFADELRALAAQH--PNLRLHLLYTRE-E------------------------------- 191 (243)
T ss_pred --CCCCEEEEEEcCChhhh-HHHHHHHHHHHhC--CCeEEEEEEcCC-c-------------------------------
Confidence 12589999999999876 5788898887543 468888888763 0
Q ss_pred cccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecC
Q psy5584 1952 NHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013 (2014)
Q Consensus 1952 ~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~F 2013 (2014)
..||.+... ++.+. ++.....||+|||++|++++++.+++. |++ -.+|+|.|
T Consensus 192 -~~g~~~~~~-l~~~~---~~~~~~~vyvcGp~~m~~~~~~~l~~~----Gv~-~~i~~e~F 243 (243)
T cd06216 192 -LDGRLSAAH-LDAVV---PDLADRQVYACGPPGFLDAAEELLEAA----GLA-DRLHTERF 243 (243)
T ss_pred -cCCCCCHHH-HHHhc---cCcccCeEEEECCHHHHHHHHHHHHHC----CCc-cceeeccC
Confidence 015555322 22222 222345799999999999999999887 788 89999998
No 17
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.93 E-value=5.7e-25 Score=257.92 Aligned_cols=226 Identities=18% Similarity=0.331 Sum_probs=174.4
Q ss_pred EeEEEEEEEcCCCEEEEEEecCC--CCcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEec--CCccHHHHh
Q psy5584 1733 ALDILETELLPSDVIKIRFYRPP--NFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQ--GPWTWKLRN 1807 (2014)
Q Consensus 1733 ~~~v~~v~~l~~~v~~l~~~~p~--~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~ 1807 (2014)
.++|++++.+++++++++|+.+. .+.|+||||+.|.+|.. ..+|||||+|.|.+ +.++|+||.. |.+|..|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~ 79 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGT--EETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDD 79 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCC--CcccccccCCCCCCCCEEEEEEEECCCCchhhHHhh
Confidence 46788999999999999998654 57899999999998854 37899999999976 8899999997 778888876
Q ss_pred hhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCc
Q psy5584 1808 YFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSH 1887 (2014)
Q Consensus 1808 ~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~ 1887 (2014)
.++.+ .++.|.||||.+......++++||||||+||||++|+++++..... .++|+|+|++|+.
T Consensus 80 ~l~~G--------~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~--------~~~v~l~~~~r~~ 143 (232)
T cd06212 80 GLAVG--------DPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGS--------DRPVRFFYGARTA 143 (232)
T ss_pred cCCCC--------CEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCC--------CCcEEEEEeccch
Confidence 54443 3899999999987544457899999999999999999999986532 2479999999999
Q ss_pred ccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHH
Q psy5584 1888 KHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQ 1967 (2014)
Q Consensus 1888 ~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~ 1967 (2014)
+++. +.++|.++++.. .+++++..+++.... +.+++. .|+. .+.+.+.
T Consensus 144 ~~~~-~~~~l~~l~~~~--~~~~~~~~~s~~~~~---------------------~~~~~~-----~g~~--~~~~~~~- 191 (232)
T cd06212 144 RDLF-YLEEIAALGEKI--PDFTFIPALSESPDD---------------------EGWSGE-----TGLV--TEVVQRN- 191 (232)
T ss_pred HHhc-cHHHHHHHHHhC--CCEEEEEEECCCCCC---------------------CCCcCC-----cccH--HHHHHhh-
Confidence 9886 678888887643 467777777764211 001111 1332 2233222
Q ss_pred HhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1968 KKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1968 ~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
..+..+..||+|||++|++++.+.+.+. |++.-++|.|.|+
T Consensus 192 --~~~~~~~~v~~CGp~~~~~~v~~~l~~~----G~~~~~i~~e~f~ 232 (232)
T cd06212 192 --EATLAGCDVYLCGPPPMIDAALPVLEMS----GVPPDQIFYDKFT 232 (232)
T ss_pred --ccCccCCEEEEECCHHHHHHHHHHHHHc----CCCHHHeeecccC
Confidence 2222345699999999999999999987 7888899999995
No 18
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.93 E-value=5.5e-25 Score=258.03 Aligned_cols=225 Identities=23% Similarity=0.343 Sum_probs=177.5
Q ss_pred EEEEEEEcCCCEEEEEEecCCC--CcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEec--CCccHHHHhhh
Q psy5584 1735 DILETELLPSDVIKIRFYRPPN--FTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQ--GPWTWKLRNYF 1809 (2014)
Q Consensus 1735 ~v~~v~~l~~~v~~l~~~~p~~--~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~~ 1809 (2014)
+|++++.+++++..++|+.|.. +.|+||||+.|.+|..+...+|||||+|+|.+ +.+.|+||.. |.+|+.|.+.+
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~~ 81 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDNL 81 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhcC
Confidence 5788889999999999999875 78999999999998666666899999999865 4699999998 88999887655
Q ss_pred ccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCccc
Q psy5584 1810 DPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKH 1889 (2014)
Q Consensus 1810 ~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~ 1889 (2014)
..+ ..+.|.||||.+.......+++||||||+||||++++++++..... .++|+|+|++|+.++
T Consensus 82 ~~G--------~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~--------~~~v~l~~~~r~~~~ 145 (231)
T cd06215 82 KVG--------DELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRP--------DADIVFIHSARSPAD 145 (231)
T ss_pred CCC--------CEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC--------CCcEEEEEecCChhh
Confidence 443 3899999999986543347899999999999999999999976532 258999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHh
Q psy5584 1890 FEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKK 1969 (2014)
Q Consensus 1890 l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~ 1969 (2014)
+. +.++|.++.+.. ..+++++++|+.... .+.+ ..||.+.+. +.....
T Consensus 146 ~~-~~~~l~~l~~~~--~~~~~~~~~~~~~~~----------------------~~~~-----~~g~~~~~~-l~~~~~- 193 (231)
T cd06215 146 II-FADELEELARRH--PNFRLHLILEQPAPG----------------------AWGG-----YRGRLNAEL-LALLVP- 193 (231)
T ss_pred hh-HHHHHHHHHHHC--CCeEEEEEEccCCCC----------------------cccc-----cCCcCCHHH-HHHhcC-
Confidence 87 778888887653 468888888874221 0111 127776432 333222
Q ss_pred CCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecC
Q psy5584 1970 HSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013 (2014)
Q Consensus 1970 ~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~F 2013 (2014)
+.....||+|||++|++++++.+++. |++.-.+|+|.|
T Consensus 194 --~~~~~~v~icGp~~m~~~~~~~l~~~----gv~~~~i~~e~f 231 (231)
T cd06215 194 --DLKERTVFVCGPAGFMKAVKSLLAEL----GFPMSRFHQESF 231 (231)
T ss_pred --CccCCeEEEECCHHHHHHHHHHHHHc----CCCHHHeeeecC
Confidence 11235799999999999999999887 788889999998
No 19
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.93 E-value=8.5e-25 Score=255.77 Aligned_cols=222 Identities=21% Similarity=0.315 Sum_probs=174.6
Q ss_pred EeEEEEEEEcCCCEEEEEEecCC--CCcccCCCEEEEEecCCCCCcccccccCCCCCCCeEEEEEEec--CCccHHHHhh
Q psy5584 1733 ALDILETELLPSDVIKIRFYRPP--NFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKAQ--GPWTWKLRNY 1808 (2014)
Q Consensus 1733 ~~~v~~v~~l~~~v~~l~~~~p~--~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~T~~L~~~ 1808 (2014)
.++|++++.+++++++|+++.|. .+.|+||||+.|.+|.. ..+|||||+|.|.++.++|+||.. |..|..|.+.
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ysi~s~~~~~~i~~~i~~~~~G~~s~~l~~~ 80 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGT--DETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLRDR 80 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCC--CcccccccccCCCCCeEEEEEEEcCCCcchhhHHhc
Confidence 57899999999999999999886 67899999999998754 468999999999888999999986 7789998875
Q ss_pred hccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcc
Q psy5584 1809 FDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHK 1888 (2014)
Q Consensus 1809 ~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~ 1888 (2014)
++.+ ..+.|.||||.+... ...+++||||||+||||++|+++++..... .++++|+|++|+.+
T Consensus 81 l~~G--------~~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~~--------~~~v~l~~~~r~~~ 143 (228)
T cd06209 81 AQPG--------DRLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDGS--------AHPVHLVYGVTRDA 143 (228)
T ss_pred cCCC--------CEEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcCC--------CCcEEEEEecCCHH
Confidence 5443 389999999998653 344789999999999999999999986532 24899999999998
Q ss_pred cHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHH
Q psy5584 1889 HFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQK 1968 (2014)
Q Consensus 1889 ~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~ 1968 (2014)
++. +.++|+++.+.. +++++++++|+... + .+.+ |+.. +.+....
T Consensus 144 ~~~-~~~~l~~l~~~~--~~~~~~~~~s~~~~-~-----------------------~~~~-----g~v~--~~~~~~~- 188 (228)
T cd06209 144 DLV-ELDRLEALAERL--PGFSFRTVVADPDS-W-----------------------HPRK-----GYVT--DHLEAED- 188 (228)
T ss_pred Hhc-cHHHHHHHHHhC--CCeEEEEEEcCCCc-c-----------------------CCCc-----CCcc--HHHHHhh-
Confidence 876 678888887654 46888888887422 1 0100 2222 2222111
Q ss_pred hCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1969 KHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1969 ~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
....+..||+|||++|++++++.+.+. |++.-++|.|.|+
T Consensus 189 --~~~~~~~v~icGp~~m~~~~~~~l~~~----G~~~~~i~~E~F~ 228 (228)
T cd06209 189 --LNDGDVDVYLCGPPPMVDAVRSWLDEQ----GIEPANFYYEKFT 228 (228)
T ss_pred --ccCCCcEEEEeCCHHHHHHHHHHHHHc----CCCHHHEeeeccC
Confidence 111245699999999999999999886 8888899999995
No 20
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.93 E-value=5.7e-25 Score=254.99 Aligned_cols=208 Identities=23% Similarity=0.394 Sum_probs=161.1
Q ss_pred CCEEEEEEecCCC-CcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEecCCccHHHHhhhccCCCCCCCCCc
Q psy5584 1744 SDVIKIRFYRPPN-FTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQGPWTWKLRNYFDPCNFNASEDQP 1821 (2014)
Q Consensus 1744 ~~v~~l~~~~p~~-~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~~~~ 1821 (2014)
.+++.|++..+.. +.|+|||||.|.+|..+.+++|||||+|.|.+ +.++|+||..|.+|+.|.+.+..+ .
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l~~G--------~ 78 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERLKPG--------T 78 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhCCCC--------C
Confidence 3678888887665 78999999999998766688999999999866 599999999999999998655544 3
Q ss_pred EEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHH
Q psy5584 1822 KIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVE 1901 (2014)
Q Consensus 1822 ~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~ 1901 (2014)
++.|.||||.+.... .++++||||||+||||++|+++++..... .++|+|+|++|+.+++. +.++|+++.
T Consensus 79 ~v~i~gP~G~~~~~~-~~~~~vlia~GtGiap~~~~l~~~~~~~~--------~~~v~l~~~~r~~~~~~-~~~~l~~l~ 148 (216)
T cd06198 79 RVTVEGPYGRFTFDD-RRARQIWIAGGIGITPFLALLEALAARGD--------ARPVTLFYCVRDPEDAV-FLDELRALA 148 (216)
T ss_pred EEEEECCCCCCcccc-cCceEEEEccccCHHHHHHHHHHHHhcCC--------CceEEEEEEECCHHHhh-hHHHHHHHH
Confidence 899999999976543 37899999999999999999999986532 25899999999998865 788888887
Q ss_pred hcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEe
Q psy5584 1902 KKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSC 1981 (2014)
Q Consensus 1902 ~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vC 1981 (2014)
+.. .+++++..+... ++.+...++. ..........||+|
T Consensus 149 ~~~---~~~~~~~~~~~~-----------------------------------~~~~~~~~~~---~~~~~~~~~~vyic 187 (216)
T cd06198 149 AAA---GVVLHVIDSPSD-----------------------------------GRLTLEQLVR---ALVPDLADADVWFC 187 (216)
T ss_pred Hhc---CeEEEEEeCCCC-----------------------------------cccchhhhhh---hcCCCcCCCeEEEE
Confidence 653 556665444321 1111111110 11111235679999
Q ss_pred CChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1982 GPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1982 GP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
||++|++++++.+.+. |++.-.+|.|.|+
T Consensus 188 Gp~~m~~~v~~~l~~~----Gv~~~~I~~E~f~ 216 (216)
T cd06198 188 GPPGMADALEKGLRAL----GVPARRFHYERFE 216 (216)
T ss_pred CcHHHHHHHHHHHHHc----CCChHhcchhhcC
Confidence 9999999999999886 7889999999995
No 21
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.93 E-value=6.5e-25 Score=264.62 Aligned_cols=233 Identities=20% Similarity=0.363 Sum_probs=176.7
Q ss_pred eeeEeEEEEEEEcCCCEEEEEEecCCC--CcccCCCEEEEEecCC-----------------------------CCCccc
Q psy5584 1730 KYMALDILETELLPSDVIKIRFYRPPN--FTYHSGQWVRLACTAF-----------------------------KNAAYH 1778 (2014)
Q Consensus 1730 ~~~~~~v~~v~~l~~~v~~l~~~~p~~--~~~~pGQyv~L~~p~~-----------------------------~~~e~H 1778 (2014)
..+.++|++++.++++++.++++.|.. +.|+|||||.|.+|.. +....|
T Consensus 8 ~~~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 87 (283)
T cd06188 8 KKWECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSR 87 (283)
T ss_pred ceEEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCcccc
Confidence 346688999999999999999998865 7899999999999853 112359
Q ss_pred ccccCCCCC-CCeEEEEEEe-----------cCCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEE
Q psy5584 1779 SFTLTSAPH-ENFLSCHIKA-----------QGPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVG 1846 (2014)
Q Consensus 1779 PFTIaS~p~-~~~l~l~Ir~-----------~G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIa 1846 (2014)
||||+|+|. ++.++|+||. .|..|..|.+ ++. +.++.|.||+|.+... ...+++||||
T Consensus 88 ~ySias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~-l~~--------Gd~v~i~gP~G~f~l~-~~~~~~vlIA 157 (283)
T cd06188 88 AYSLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFN-LKP--------GDKVTASGPFGEFFIK-DTDREMVFIG 157 (283)
T ss_pred ccCcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhc-CCC--------CCEEEEECcccccccc-CCCCcEEEEE
Confidence 999999996 5789999996 5778888876 333 3489999999998754 3567999999
Q ss_pred eccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcch
Q psy5584 1847 GGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRT 1926 (2014)
Q Consensus 1847 GGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~ 1926 (2014)
|||||||++|++++++..... .++|+|+|++|+.+++. |.++|.++++.. +++++++.+|+.... +
T Consensus 158 gGtGItP~~s~l~~~~~~~~~-------~~~v~l~~g~r~~~d~~-~~~el~~l~~~~--~~~~~~~~~s~~~~~-~--- 223 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKTLKS-------KRKISFWYGARSLKELF-YQEEFEALEKEF--PNFKYHPVLSEPQPE-D--- 223 (283)
T ss_pred ecccHhHHHHHHHHHHhcCCC-------CceEEEEEecCCHHHhh-HHHHHHHHHHHC--CCeEEEEEECCCCcc-C---
Confidence 999999999999998765322 25899999999998875 788899887653 457777777764210 0
Q ss_pred hhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeE
Q psy5584 1927 TMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYF 2006 (2014)
Q Consensus 1927 ~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~ 2006 (2014)
.+.| ..||.+ +.+.+.+........+..||+|||++|++++++++++. |++.-
T Consensus 224 -----------------~~~~-----~~G~v~-~~~~~~~~~~~~~~~~~~vyiCGP~~m~~~~~~~l~~~----Gv~~~ 276 (283)
T cd06188 224 -----------------NWDG-----YTGFIH-QVLLENYLKKHPAPEDIEFYLCGPPPMNSAVIKMLDDL----GVPRE 276 (283)
T ss_pred -----------------CCCC-----cceeec-HHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHHc----CCCHH
Confidence 0111 115544 22333332222222357799999999999999999987 78888
Q ss_pred EEEEecC
Q psy5584 2007 IHHFENF 2013 (2014)
Q Consensus 2007 ~~h~E~F 2013 (2014)
.+|+|.|
T Consensus 277 ~i~~e~F 283 (283)
T cd06188 277 NIAFDDF 283 (283)
T ss_pred HeeccCC
Confidence 9999998
No 22
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.93 E-value=8.2e-25 Score=256.42 Aligned_cols=226 Identities=19% Similarity=0.244 Sum_probs=174.4
Q ss_pred EEEEEEEcCCCEEEEEEecCCC--CcccCCCEEEEEecCCCCCcccccccCCCCCCCeEEEEEEec--CCccHHHHhhhc
Q psy5584 1735 DILETELLPSDVIKIRFYRPPN--FTYHSGQWVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKAQ--GPWTWKLRNYFD 1810 (2014)
Q Consensus 1735 ~v~~v~~l~~~v~~l~~~~p~~--~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~T~~L~~~~~ 1810 (2014)
+|++++.+++++++++|..|.. +.|+||||+.|.++..+...+|||||+|.|.++.++|+||.. |.+|..|.+.++
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~l~~~v~~~~~G~~s~~l~~~~~ 81 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRVPGGRVSNYLREHIQ 81 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCCCCeEEEEEEECCCCccchHHHhcCC
Confidence 5788889999999999997754 589999999999876555678999999998878899999998 889999986554
Q ss_pred cCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccH
Q psy5584 1811 PCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHF 1890 (2014)
Q Consensus 1811 ~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l 1890 (2014)
.+ .++.|.||||.+.......+++|||||||||||++|+++++..... .++++|+|++|+.+++
T Consensus 82 ~G--------d~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~--------~~~v~l~~~~r~~~~~ 145 (231)
T cd06191 82 PG--------MTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAP--------ESDFTLIHSARTPADM 145 (231)
T ss_pred CC--------CEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCC--------CCCEEEEEecCCHHHH
Confidence 43 3899999999976544456799999999999999999999876532 2589999999999998
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhC
Q psy5584 1891 EWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKH 1970 (2014)
Q Consensus 1891 ~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~ 1970 (2014)
. +.++|.++++. ..++++++++|+.....+ +.+.+ |+.. ..+.+.+.
T Consensus 146 ~-~~~el~~l~~~--~~~~~~~~~~s~~~~~~~---------------------~~~~~-----~~~~-~~l~~~~~--- 192 (231)
T cd06191 146 I-FAQELRELADK--PQRLRLLCIFTRETLDSD---------------------LLHGR-----IDGE-QSLGAALI--- 192 (231)
T ss_pred h-HHHHHHHHHHh--CCCeEEEEEECCCCCCcc---------------------ccCCc-----cccc-HHHHHHhC---
Confidence 6 77889888764 357888888887532110 11100 2211 22222221
Q ss_pred CCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecC
Q psy5584 1971 SYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013 (2014)
Q Consensus 1971 ~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~F 2013 (2014)
+......||+|||++|++++++.+++. |++.-.+|.|.|
T Consensus 193 ~~~~~~~vyicGp~~mv~~~~~~l~~~----G~~~~~i~~E~f 231 (231)
T cd06191 193 PDRLEREAFICGPAGMMDAVETALKEL----GMPPERIHTERF 231 (231)
T ss_pred ccccCCeEEEECCHHHHHHHHHHHHHc----CCCHHHeeeccC
Confidence 111235799999999999999999887 788889999998
No 23
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.93 E-value=1e-24 Score=255.79 Aligned_cols=228 Identities=18% Similarity=0.253 Sum_probs=172.6
Q ss_pred EEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEec--CCccHHHHhhhccCC
Q psy5584 1737 LETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQ--GPWTWKLRNYFDPCN 1813 (2014)
Q Consensus 1737 ~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~~ 1813 (2014)
++++.++++++.++|+.+..+.|+||||+.|.+|..+ ..|||||+|.|.+ +.++|+||.. |.+|..|.+.++.+
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~~~~g- 78 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANASGEWEFIIKRKPGGAASNALFDNLEPG- 78 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhcCCCC-
Confidence 4677889999999999888889999999999998643 6799999999865 7899999987 88999998755443
Q ss_pred CCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHH
Q psy5584 1814 FNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWF 1893 (2014)
Q Consensus 1814 ~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~ 1893 (2014)
.++.|.||||.+.......+++||||||+||||++|+++++..... ....+|+|+|++|+.+++. +
T Consensus 79 -------~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~------~~~~~v~l~~~~r~~~~~~-~ 144 (232)
T cd06190 79 -------DELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY------LSDRPVDLFYGGRTPSDLC-A 144 (232)
T ss_pred -------CEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc------CCCCeEEEEEeecCHHHHh-h
Confidence 3899999999987544456799999999999999999999986521 1235899999999999886 7
Q ss_pred HHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCC
Q psy5584 1894 IDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYV 1973 (2014)
Q Consensus 1894 ~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~ 1973 (2014)
.++|.++++. ...+++++.+|+...... ..+.+. .||.. +.+.+..... .
T Consensus 145 ~~el~~l~~~--~~~~~~~~~~s~~~~~~~-------------------~~~~~~-----~g~v~--~~l~~~~~~~--~ 194 (232)
T cd06190 145 LDELSALVAL--GARLRVTPAVSDAGSGSA-------------------AGWDGP-----TGFVH--EVVEATLGDR--L 194 (232)
T ss_pred HHHHHHHHHh--CCCEEEEEEeCCCCCCcC-------------------CCccCC-----cCcHH--HHHHhhccCC--c
Confidence 8889998875 356788887776422100 001111 14433 2333322221 2
Q ss_pred CeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1974 SKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1974 ~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
....||+|||++|++++++.+.+.+ +++.-++|+|.|+
T Consensus 195 ~~~~vyiCGp~~m~~~v~~~l~~~g---~~~~~~i~~e~f~ 232 (232)
T cd06190 195 AEFEFYFAGPPPMVDAVQRMLMIEG---VVPFDQIHFDRFV 232 (232)
T ss_pred cccEEEEECCHHHHHHHHHHHHHhC---CCChHheeecccC
Confidence 3567999999999999999998873 2347789999996
No 24
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.93 E-value=1.2e-24 Score=255.81 Aligned_cols=226 Identities=18% Similarity=0.303 Sum_probs=173.9
Q ss_pred eEeEEEEEEEcCCCEEEEEEecCCC------CcccCCCEEEEEecCCCCCcccccccCCCCC-CCeEEEEEEec--CCcc
Q psy5584 1732 MALDILETELLPSDVIKIRFYRPPN------FTYHSGQWVRLACTAFKNAAYHSFTLTSAPH-ENFLSCHIKAQ--GPWT 1802 (2014)
Q Consensus 1732 ~~~~v~~v~~l~~~v~~l~~~~p~~------~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~-~~~l~l~Ir~~--G~~T 1802 (2014)
+.++|++++.++++++.++++.|.. +.|+||||+.|.+|. ...+|||||+|.|. ++.++|+||.. |.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPG--TDTRRSYSLANTPNWDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred ceEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCC--CccceecccCCCCCCCCEEEEEEEEcCCCccc
Confidence 3578899999999999999998764 789999999999884 34689999999986 67899999986 7789
Q ss_pred HHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEE
Q psy5584 1803 WKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLW 1882 (2014)
Q Consensus 1803 ~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW 1882 (2014)
..|.+.++.+ .++.|.||||.+.......+++|||||||||||++++++++..... .++++|+|
T Consensus 80 ~~l~~~~~~G--------d~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~--------~~~v~l~~ 143 (236)
T cd06210 80 TYLETRAKVG--------QRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGE--------PQEARLFF 143 (236)
T ss_pred hhhhhCcCCC--------CEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCC--------CceEEEEE
Confidence 9888754444 3899999999986543456789999999999999999999876532 24899999
Q ss_pred EeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHH
Q psy5584 1883 ICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSF 1962 (2014)
Q Consensus 1883 ~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~i 1962 (2014)
++|+.+++. +.++|+++++.. ++++++.++++....+ .|. .|+. .+.
T Consensus 144 ~~r~~~~~~-~~~~l~~l~~~~--~~~~~~~~~s~~~~~~-----------------------~~~-----~g~~--~~~ 190 (236)
T cd06210 144 GVNTEAELF-YLDELKRLADSL--PNLTVRICVWRPGGEW-----------------------EGY-----RGTV--VDA 190 (236)
T ss_pred ecCCHHHhh-hHHHHHHHHHhC--CCeEEEEEEcCCCCCc-----------------------CCc-----cCcH--HHH
Confidence 999999876 778888887653 4688888887642111 111 1332 122
Q ss_pred HHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1963 LKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1963 l~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
+........ ....||+|||++|++++++.+++. |++.-.+|.|.|.
T Consensus 191 l~~~l~~~~--~~~~vyicGp~~m~~~~~~~l~~~----G~~~~~i~~E~f~ 236 (236)
T cd06210 191 LREDLASSD--AKPDIYLCGPPGMVDAAFAAAREA----GVPDEQVYLEKFL 236 (236)
T ss_pred HHHhhcccC--CCcEEEEeCCHHHHHHHHHHHHHc----CCCHHHeeecccC
Confidence 222111111 245699999999999999999886 7777789999995
No 25
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.93 E-value=1.1e-24 Score=256.29 Aligned_cols=228 Identities=18% Similarity=0.280 Sum_probs=176.3
Q ss_pred eeEeEEEEEEEcCCCEEEEEEecCCCC--cccCCCEEEEEecCCCCCcccccccCCCCC-CCeEEEEEEec--CCccHHH
Q psy5584 1731 YMALDILETELLPSDVIKIRFYRPPNF--TYHSGQWVRLACTAFKNAAYHSFTLTSAPH-ENFLSCHIKAQ--GPWTWKL 1805 (2014)
Q Consensus 1731 ~~~~~v~~v~~l~~~v~~l~~~~p~~~--~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~-~~~l~l~Ir~~--G~~T~~L 1805 (2014)
.+.++|++++.+++++..++++.|... .|+||||+.|.+|.. ...|||||+|.|. ++.++|+||.. |..|..|
T Consensus 6 ~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~~l 83 (238)
T cd06211 6 DFEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGY--EGTRAFSIASSPSDAGEIELHIRLVPGGIATTYV 83 (238)
T ss_pred EEeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCC--CCccccccCCCCCCCCEEEEEEEECCCCcchhhH
Confidence 456889999999999999999987654 899999999998754 3679999999986 57899999997 8899999
Q ss_pred HhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeC
Q psy5584 1806 RNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICP 1885 (2014)
Q Consensus 1806 ~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R 1885 (2014)
++.++.+ .++.|.||||.+.......+++|||||||||||++|+++++..... .++|+|+|++|
T Consensus 84 ~~~l~~G--------~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~--------~~~v~l~~~~r 147 (238)
T cd06211 84 HKQLKEG--------DELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD--------TRKITLFFGAR 147 (238)
T ss_pred hhcCCCC--------CEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC--------CCcEEEEEecC
Confidence 7554443 3899999999987543345799999999999999999999986532 14899999999
Q ss_pred CcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHH
Q psy5584 1886 SHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKF 1965 (2014)
Q Consensus 1886 ~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~ 1965 (2014)
+.+++ ++.++|+++++.. .+++++..+|+.... +.+.|. .||.+ +++..
T Consensus 148 ~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~---------------------~~~~~~-----~g~v~--~~l~~ 196 (238)
T cd06211 148 TRAEL-YYLDEFEALEKDH--PNFKYVPALSREPPE---------------------SNWKGF-----TGFVH--DAAKK 196 (238)
T ss_pred Chhhh-ccHHHHHHHHHhC--CCeEEEEEECCCCCC---------------------cCcccc-----cCcHH--HHHHH
Confidence 99887 5889999887653 357777777764211 011121 14433 33333
Q ss_pred HHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecC
Q psy5584 1966 VQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013 (2014)
Q Consensus 1966 l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~F 2013 (2014)
.... ......||+|||++|++++.+.+.+. |++.-.+|+|.|
T Consensus 197 ~~~~--~~~~~~vyvCGp~~m~~~~~~~L~~~----Gv~~~~i~~e~F 238 (238)
T cd06211 197 HFKN--DFRGHKAYLCGPPPMIDACIKTLMQG----RLFERDIYYEKF 238 (238)
T ss_pred hccc--ccccCEEEEECCHHHHHHHHHHHHHc----CCCHHHccccCC
Confidence 3221 11345799999999999999999987 778889999988
No 26
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.93 E-value=8.4e-25 Score=254.78 Aligned_cols=218 Identities=18% Similarity=0.231 Sum_probs=170.0
Q ss_pred EEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEec--CCccHHHHhhhccC
Q psy5584 1736 ILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQ--GPWTWKLRNYFDPC 1812 (2014)
Q Consensus 1736 v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~ 1812 (2014)
|++++.+++++++++++.|..+.|+||||++|.+|.. ..|||||+|.|.+ +.++|+||.. |.+|..|.+.+..+
T Consensus 1 V~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~~~~G 77 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEARPG 77 (222)
T ss_pred CceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCCCCCEEEEEEEeccCCccchHHHhccCCC
Confidence 3567888999999999998888999999999998753 5699999999876 7899999986 77899988755544
Q ss_pred CCCCCCCCcEEEEECCCCCCCCCc-CCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHH
Q psy5584 1813 NFNASEDQPKIRLEGPFGGGNQDW-YKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFE 1891 (2014)
Q Consensus 1813 ~~~~~~~~~~v~IdGPyG~~~~~~-~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~ 1891 (2014)
.++.|.||||.+.... ...+++||||||+||||+++++++++.... .++|+|+|++|+.+++.
T Consensus 78 --------~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~--------~~~v~l~~~~r~~~~~~ 141 (222)
T cd06194 78 --------HALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGH--------QGEIRLVHGARDPDDLY 141 (222)
T ss_pred --------CEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCC--------CccEEEEEecCChhhcc
Confidence 3899999999987543 456799999999999999999999886532 25899999999999875
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCC
Q psy5584 1892 WFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHS 1971 (2014)
Q Consensus 1892 w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~ 1971 (2014)
+.++|+++++.. +.++++.++++..... ++.....+...+.. .
T Consensus 142 -~~~el~~l~~~~--~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~-~- 184 (222)
T cd06194 142 -LHPALLWLAREH--PNFRYIPCVSEGSQGD--------------------------------PRVRAGRIAAHLPP-L- 184 (222)
T ss_pred -CHHHHHHHHHHC--CCeEEEEEEccCCCCC--------------------------------cccccchhhhhhcc-c-
Confidence 889999987643 4677877777642110 00001112222111 1
Q ss_pred CCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1972 YVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1972 ~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
.....||+|||++|++++++.+.+. |++.-.+|.|.|+
T Consensus 185 -~~~~~vyicGp~~m~~~~~~~L~~~----Gv~~~~i~~e~f~ 222 (222)
T cd06194 185 -TRDDVVYLCGAPSMVNAVRRRAFLA----GAPMKRIYADPFE 222 (222)
T ss_pred -cCCCEEEEeCCHHHHHHHHHHHHHc----CCCHHHeeecccC
Confidence 1246699999999999999999887 8889999999996
No 27
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.93 E-value=9e-25 Score=270.48 Aligned_cols=228 Identities=18% Similarity=0.285 Sum_probs=177.0
Q ss_pred eeeEeEEEEEEEcCCCEEEEEEecC--CCCcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEec--CCccHH
Q psy5584 1730 KYMALDILETELLPSDVIKIRFYRP--PNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQ--GPWTWK 1804 (2014)
Q Consensus 1730 ~~~~~~v~~v~~l~~~v~~l~~~~p--~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~ 1804 (2014)
..+.++|++++.++++++.|+|+.| ..+.|+|||||.|.+|. ..+|||||+|.|.+ +.++|+||.. |.+|..
T Consensus 101 ~~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~---~~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~ 177 (339)
T PRK07609 101 KKLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKD---GKRRSYSIANAPHSGGPLELHIRHMPGGVFTDH 177 (339)
T ss_pred eEEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCC---CceeeeecCCCCCCCCEEEEEEEecCCCccHHH
Confidence 4567899999999999999999987 35789999999999875 25899999999976 7999999976 788888
Q ss_pred HHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEe
Q psy5584 1805 LRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWIC 1884 (2014)
Q Consensus 1805 L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~ 1884 (2014)
|++.++.+. .+.|.||||.+.......+++|||||||||||++|++++++.... .++|+|+|++
T Consensus 178 l~~~l~~G~--------~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~--------~~~i~l~~g~ 241 (339)
T PRK07609 178 VFGALKERD--------ILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKGI--------QRPVTLYWGA 241 (339)
T ss_pred HHHhccCCC--------EEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcCC--------CCcEEEEEec
Confidence 887655543 899999999987654466799999999999999999999986532 2479999999
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHH
Q psy5584 1885 PSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLK 1964 (2014)
Q Consensus 1885 R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~ 1964 (2014)
|+.+++. +.++++++++.. ++++++..+|+.... +.+.|. .|+.+ +
T Consensus 242 r~~~dl~-~~e~l~~~~~~~--~~~~~~~~~s~~~~~---------------------~~~~g~-----~G~v~-----~ 287 (339)
T PRK07609 242 RRPEDLY-LSALAEQWAEEL--PNFRYVPVVSDALDD---------------------DAWTGR-----TGFVH-----Q 287 (339)
T ss_pred CChHHhc-cHHHHHHHHHhC--CCeEEEEEecCCCCC---------------------CCccCc-----cCcHH-----H
Confidence 9999874 677788887643 468888888874211 011221 14432 1
Q ss_pred HHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1965 FVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1965 ~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
.+.+...+.....||+|||++|++++++.+.+. |++.-.+|+|.|+
T Consensus 288 ~~~~~~~~~~~~~vy~CGp~~m~~~~~~~l~~~----G~~~~~i~~e~F~ 333 (339)
T PRK07609 288 AVLEDFPDLSGHQVYACGSPVMVYAARDDFVAA----GLPAEEFFADAFT 333 (339)
T ss_pred HHHhhcccccCCEEEEECCHHHHHHHHHHHHHc----CCCHHHeEEeecc
Confidence 222222222346799999999999999999886 7888899999996
No 28
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.93 E-value=1.4e-24 Score=267.78 Aligned_cols=226 Identities=18% Similarity=0.269 Sum_probs=174.9
Q ss_pred eeeEeEEEEEEEcCCCEEEEEEecC---CCCcccCCCEEEEEecCCCCCcccccccCCCCC-CCeEEEEEEec--CCccH
Q psy5584 1730 KYMALDILETELLPSDVIKIRFYRP---PNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPH-ENFLSCHIKAQ--GPWTW 1803 (2014)
Q Consensus 1730 ~~~~~~v~~v~~l~~~v~~l~~~~p---~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~-~~~l~l~Ir~~--G~~T~ 1803 (2014)
....++|++++.+++++..|+|+.+ ..+.|+||||+.|.+|.. ..+|||||+|.|. ++.++|+||.. |..|.
T Consensus 105 ~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySias~p~~~~~l~~~ik~~~~G~~s~ 182 (340)
T PRK11872 105 LKISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGT--DDWRSYSFANRPNATNQLQFLIRLLPDGVMSN 182 (340)
T ss_pred ceeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCC--CceeecccCCCCCCCCeEEEEEEECCCCcchh
Confidence 3456889999999999999999877 567899999999998853 3589999999986 57899999986 55788
Q ss_pred HHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEE
Q psy5584 1804 KLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWI 1883 (2014)
Q Consensus 1804 ~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~ 1883 (2014)
.|++.++.+ ..+.|.||||.+... ...+++|||||||||||++|+++++..... .++|+|+|+
T Consensus 183 ~L~~~l~~G--------~~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~~--------~~~v~l~~g 245 (340)
T PRK11872 183 YLRERCQVG--------DEILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQGC--------SPPVHLYYG 245 (340)
T ss_pred hHhhCCCCC--------CEEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcCC--------CCcEEEEEe
Confidence 887655444 389999999998754 345799999999999999999999986521 247999999
Q ss_pred eCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHH
Q psy5584 1884 CPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFL 1963 (2014)
Q Consensus 1884 ~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il 1963 (2014)
+|+.+++. +.++|+++++.. ++++++..+++.... +.|. .|+.. +.+.
T Consensus 246 ~r~~~dl~-~~~el~~~~~~~--~~~~~~~~~s~~~~~-----------------------~~g~-----~g~v~-~~l~ 293 (340)
T PRK11872 246 VRHAADLC-ELQRLAAYAERL--PNFRYHPVVSKASAD-----------------------WQGK-----RGYIH-EHFD 293 (340)
T ss_pred cCChHHhc-cHHHHHHHHHHC--CCcEEEEEEeCCCCc-----------------------CCCc-----eeecc-HHHH
Confidence 99999987 778899887653 468888877764221 1121 14433 1111
Q ss_pred HHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1964 KFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1964 ~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
.... . .....||+|||++|++++++.+.+. |++.-++|+|.|+
T Consensus 294 ~~~l---~-~~~~~vy~CGp~~mv~~~~~~L~~~----Gv~~~~i~~E~F~ 336 (340)
T PRK11872 294 KAQL---R-DQAFDMYLCGPPPMVEAVKQWLDEQ----ALENYRLYYEKFT 336 (340)
T ss_pred Hhhc---C-cCCCEEEEeCCHHHHHHHHHHHHHc----CCCHHHEEEeeec
Confidence 1111 1 1234699999999999999999887 8889999999996
No 29
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.93 E-value=3e-24 Score=253.47 Aligned_cols=233 Identities=20% Similarity=0.264 Sum_probs=179.7
Q ss_pred eEeEEEEEEEcCCCEEEEEEecCCC----CcccCCCEEEEEecCCCCCcccccccCCCCCCCeEEEEEEec--CCccHHH
Q psy5584 1732 MALDILETELLPSDVIKIRFYRPPN----FTYHSGQWVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKAQ--GPWTWKL 1805 (2014)
Q Consensus 1732 ~~~~v~~v~~l~~~v~~l~~~~p~~----~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~T~~L 1805 (2014)
+.++|++++.+++++.+++|+.|.+ +.|+||||+.|.+|..+...+|||||+|.|.++.++|+|+.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~~l~~~i~~~~~G~~s~~l 81 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNWA 81 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCCCcEEEEEEEcCCCccchhH
Confidence 3577899999999999999998764 589999999999986556678999999998877999999987 7789988
Q ss_pred HhhhccCCCCCCCCCcEEEEECCCCCCCCCcC-CCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEe
Q psy5584 1806 RNYFDPCNFNASEDQPKIRLEGPFGGGNQDWY-KFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWIC 1884 (2014)
Q Consensus 1806 ~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~-~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~ 1884 (2014)
.+.+..+ ..+.|.||+|.+..... .++++||||||+||||++++++++..... .++++|+|++
T Consensus 82 ~~~~~~G--------~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~--------~~~v~l~~~~ 145 (241)
T cd06214 82 NDELKAG--------DTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP--------ASRVTLVYGN 145 (241)
T ss_pred HhccCCC--------CEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC--------CCcEEEEEEe
Confidence 7654443 37999999999875443 57899999999999999999999886532 2589999999
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHH
Q psy5584 1885 PSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLK 1964 (2014)
Q Consensus 1885 R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~ 1964 (2014)
|+.+++ |+.++|.++.+.. ...++++.++|+.... +.+ +.||++...+.+
T Consensus 146 r~~~~~-~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~-----------------------~~~-----~~g~~~~~~~~~ 195 (241)
T cd06214 146 RTEASV-IFREELADLKARY-PDRLTVIHVLSREQGD-----------------------PDL-----LRGRLDAAKLNA 195 (241)
T ss_pred CCHHHh-hHHHHHHHHHHhC-cCceEEEEEecCCCCC-----------------------ccc-----ccCccCHHHHHH
Confidence 999987 5788898886542 3467777777753211 011 126766332222
Q ss_pred HHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1965 FVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1965 ~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
.+.+.........||+|||++|++.+++.+++. |++.-.+|.|.|+
T Consensus 196 ~~~~~~~~~~~~~v~icGp~~mv~~v~~~l~~~----G~~~~~i~~e~f~ 241 (241)
T cd06214 196 LLKNLLDATEFDEAFLCGPEPMMDAVEAALLEL----GVPAERIHRELFT 241 (241)
T ss_pred hhhhhcccccCcEEEEECCHHHHHHHHHHHHHc----CCCHHHeeccccC
Confidence 221111111356799999999999999999886 7888899999996
No 30
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.93 E-value=2.3e-24 Score=253.46 Aligned_cols=228 Identities=19% Similarity=0.232 Sum_probs=176.1
Q ss_pred eEeEEEEEEEcCCCEEEEEEecCCC--CcccCCCEEEEEecCCC-CCcccccccCCCCCC-CeEEEEEEec--CCccHHH
Q psy5584 1732 MALDILETELLPSDVIKIRFYRPPN--FTYHSGQWVRLACTAFK-NAAYHSFTLTSAPHE-NFLSCHIKAQ--GPWTWKL 1805 (2014)
Q Consensus 1732 ~~~~v~~v~~l~~~v~~l~~~~p~~--~~~~pGQyv~L~~p~~~-~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L 1805 (2014)
..++|++++.+++++++++|+.|.. ..|+||||+.|.+|... ...+|||||+|.|.+ +.++|+||.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~l 81 (235)
T cd06217 2 RVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPYL 81 (235)
T ss_pred ceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchHHH
Confidence 3577899999999999999998876 78999999999998533 446799999999865 5899999987 6689888
Q ss_pred HhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeC
Q psy5584 1806 RNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICP 1885 (2014)
Q Consensus 1806 ~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R 1885 (2014)
.+.++.+ .++.|.||||.+.......+++||||||+||||++++++++..... .++|+++|++|
T Consensus 82 ~~~l~~G--------d~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~--------~~~i~l~~~~r 145 (235)
T cd06217 82 HDEVKVG--------DLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGW--------PVPFRLLYSAR 145 (235)
T ss_pred HhcCCCC--------CEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCC--------CceEEEEEecC
Confidence 7755444 3899999999976433346899999999999999999999986532 25899999999
Q ss_pred CcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHH
Q psy5584 1886 SHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKF 1965 (2014)
Q Consensus 1886 ~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~ 1965 (2014)
+.+++. +.++|.++.+.. ++++++.++|+.... .+.+ +.||.+... ++.
T Consensus 146 ~~~~~~-~~~el~~~~~~~--~~~~~~~~~s~~~~~----------------------~~~~-----~~g~~~~~~-l~~ 194 (235)
T cd06217 146 TAEDVI-FRDELEQLARRH--PNLHVTEALTRAAPA----------------------DWLG-----PAGRITADL-IAE 194 (235)
T ss_pred CHHHhh-HHHHHHHHHHHC--CCeEEEEEeCCCCCC----------------------CcCC-----cCcEeCHHH-HHh
Confidence 999875 788888887643 457888888764110 0111 126766332 222
Q ss_pred HHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecC
Q psy5584 1966 VQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013 (2014)
Q Consensus 1966 l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~F 2013 (2014)
+. .......||+|||++|++++++.+.+. |++.-.+|.|.|
T Consensus 195 ~~---~~~~~~~v~icGp~~m~~~v~~~l~~~----Gv~~~~i~~E~f 235 (235)
T cd06217 195 LV---PPLAGRRVYVCGPPAFVEAATRLLLEL----GVPRDRIRTEAF 235 (235)
T ss_pred hC---CCccCCEEEEECCHHHHHHHHHHHHHc----CCCHHHEeeccC
Confidence 21 111345799999999999999999987 778889999998
No 31
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.93 E-value=1.8e-24 Score=252.50 Aligned_cols=221 Identities=17% Similarity=0.328 Sum_probs=170.6
Q ss_pred EEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEec--CCccHHHHhhhccC
Q psy5584 1736 ILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQ--GPWTWKLRNYFDPC 1812 (2014)
Q Consensus 1736 v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~ 1812 (2014)
|++++.++++++.++|+.|..+.|+||||+.|.+|..+ ..+|||||+|.|.+ +.++|+||.. |.+|+.|.+.++.+
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~-~~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~l~~G 79 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRP-RTWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDELKVG 79 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCC-CcceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhcCccC
Confidence 35677889999999999888889999999999998653 36899999999865 7899999998 88999998754443
Q ss_pred CCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHH
Q psy5584 1813 NFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEW 1892 (2014)
Q Consensus 1813 ~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w 1892 (2014)
..+.|.||||.+......++++||||||+||||++|+++++..... .++|.++|++|+.+++.
T Consensus 80 --------~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~~--------~~~v~l~~~~~~~~~~~- 142 (224)
T cd06187 80 --------DRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRGE--------PRPVHLFFGARTERDLY- 142 (224)
T ss_pred --------CEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcCC--------CCCEEEEEecCChhhhc-
Confidence 3899999999987544447899999999999999999999986531 24899999999999876
Q ss_pred HHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCC
Q psy5584 1893 FIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSY 1972 (2014)
Q Consensus 1893 ~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~ 1972 (2014)
+.++|.++.+.. ..+++++++++..+.+ .|.+ |+. .+.+. +....
T Consensus 143 ~~~~l~~~~~~~--~~~~~~~~~~~~~~~~-----------------------~~~~-----g~~--~~~~~---~~~~~ 187 (224)
T cd06187 143 DLEGLLALAARH--PWLRVVPVVSHEEGAW-----------------------TGRR-----GLV--TDVVG---RDGPD 187 (224)
T ss_pred ChHHHHHHHHhC--CCeEEEEEeCCCCCcc-----------------------CCCc-----ccH--HHHHH---Hhccc
Confidence 668888887643 4677877777642211 1100 211 12222 22212
Q ss_pred CCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecC
Q psy5584 1973 VSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013 (2014)
Q Consensus 1973 ~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~F 2013 (2014)
.....||+|||++|++++++.+++. |++.-.+|.|.|
T Consensus 188 ~~~~~v~vcGp~~~~~~v~~~l~~~----G~~~~~i~~e~f 224 (224)
T cd06187 188 WADHDIYICGPPAMVDATVDALLAR----GAPPERIHFDKF 224 (224)
T ss_pred cccCEEEEECCHHHHHHHHHHHHHc----CCCHHHeeccCC
Confidence 2346799999999999999999887 788889999988
No 32
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.93 E-value=2.8e-24 Score=251.08 Aligned_cols=222 Identities=17% Similarity=0.281 Sum_probs=172.7
Q ss_pred EeEEEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEec--CCccHHHHhhh
Q psy5584 1733 ALDILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQ--GPWTWKLRNYF 1809 (2014)
Q Consensus 1733 ~~~v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~~ 1809 (2014)
.++|++++.+++++++++++.+..+.|+||||+.|.+|... .+|||||+|+|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCCCCEEEEEEEECCCCcchHHHHhcC
Confidence 46788999999999999999887788999999999987543 6899999999864 7899999987 88999998766
Q ss_pred ccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCccc
Q psy5584 1810 DPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKH 1889 (2014)
Q Consensus 1810 ~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~ 1889 (2014)
+.++ ++.|.||||.+... ...+++|||||||||||++++++++..... .++|+++|++|+.++
T Consensus 80 ~~G~--------~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~~--------~~~i~l~~~~r~~~~ 142 (227)
T cd06213 80 RTGE--------RLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAGT--------KRDVTLLFGARTQRD 142 (227)
T ss_pred CCCC--------EEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcCC--------CCcEEEEEeeCCHHH
Confidence 5543 89999999998753 345799999999999999999999976532 257999999999988
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCC-CHHHHHHHHHH
Q psy5584 1890 FEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRP-DMSSFLKFVQK 1968 (2014)
Q Consensus 1890 l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRP-d~~~il~~l~~ 1968 (2014)
+. +.++|.++++.. ..+++++.++++..... .+. |++ ...+.+....
T Consensus 143 ~~-~~~~l~~l~~~~-~~~~~~~~~~s~~~~~~---------------------~~~--------g~~g~v~~~l~~~~- 190 (227)
T cd06213 143 LY-ALDEIAAIAARW-RGRFRFIPVLSEEPADS---------------------SWK--------GARGLVTEHIAEVL- 190 (227)
T ss_pred hc-cHHHHHHHHHhc-cCCeEEEEEecCCCCCC---------------------Ccc--------CCcccHHHHHHhhc-
Confidence 75 678888887542 34677877777642110 011 221 1222222222
Q ss_pred hCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecC
Q psy5584 1969 KHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013 (2014)
Q Consensus 1969 ~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~F 2013 (2014)
. ....||+|||++|++++++.+.+. |++.-.+|.|.|
T Consensus 191 --~--~~~~v~~CGp~~~~~~~~~~l~~~----G~~~~~i~~e~f 227 (227)
T cd06213 191 --L--AATEAYLCGPPAMIDAAIAVLRAL----GIAREHIHADRF 227 (227)
T ss_pred --c--CCCEEEEECCHHHHHHHHHHHHHc----CCCHHHEeccCC
Confidence 2 245699999999999999999887 778889999988
No 33
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.92 E-value=2.4e-24 Score=265.31 Aligned_cols=226 Identities=17% Similarity=0.218 Sum_probs=175.5
Q ss_pred eEeEEEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEec--CCccHHHHhh
Q psy5584 1732 MALDILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQ--GPWTWKLRNY 1808 (2014)
Q Consensus 1732 ~~~~v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~ 1808 (2014)
+.++|++++.++++++.++|..+..+.|+||||+.|.++.. ...+|||||+|.|.+ +.++|+||.. |..|..|++.
T Consensus 10 ~~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 10 NRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eeEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhc
Confidence 46788999999999999999987788999999999998843 345799999999965 6799999987 7788888766
Q ss_pred hccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcc
Q psy5584 1809 FDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHK 1888 (2014)
Q Consensus 1809 ~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~ 1888 (2014)
++.+ .++.|.||+|.+.......+++|||||||||||++|+++++..... .++|+|+|++|+.+
T Consensus 89 l~~G--------d~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~--------~~~v~l~y~~r~~~ 152 (332)
T PRK10684 89 VKRG--------DYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRP--------QADVQVIFNVRTPQ 152 (332)
T ss_pred CCCC--------CEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC--------CCCEEEEEeCCChH
Confidence 5554 3899999999987543456789999999999999999999876532 24899999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHH
Q psy5584 1889 HFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQK 1968 (2014)
Q Consensus 1889 ~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~ 1968 (2014)
++. |.++|.++++.. +.++++++.++... .| ...||.+.. ++...
T Consensus 153 ~~~-~~~el~~l~~~~--~~~~~~~~~~~~~~-------------------------~~----~~~grl~~~-~l~~~-- 197 (332)
T PRK10684 153 DVI-FADEWRQLKQRY--PQLNLTLVAENNAT-------------------------EG----FIAGRLTRE-LLQQA-- 197 (332)
T ss_pred Hhh-hHHHHHHHHHHC--CCeEEEEEeccCCC-------------------------CC----ccccccCHH-HHHHh--
Confidence 987 789999888653 34566655543210 01 012787743 22221
Q ss_pred hCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1969 KHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1969 ~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
.++.....||+|||++|++++++.+.+. |++.-++|+|.|+
T Consensus 198 -~~~~~~~~vyiCGP~~m~~~v~~~l~~~----Gv~~~~i~~E~F~ 238 (332)
T PRK10684 198 -VPDLASRTVMTCGPAPYMDWVEQEVKAL----GVTADRFFKEKFF 238 (332)
T ss_pred -cccccCCEEEEECCHHHHHHHHHHHHHc----CCCHHHeEeeccC
Confidence 1222245699999999999999999887 7888899999995
No 34
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.92 E-value=3.4e-24 Score=266.74 Aligned_cols=233 Identities=19% Similarity=0.246 Sum_probs=178.4
Q ss_pred eEeEEEEEEEcCCCEEEEEEecCC----CCcccCCCEEEEEecCCCCCcccccccCCCCCCCeEEEEEEec--CCccHHH
Q psy5584 1732 MALDILETELLPSDVIKIRFYRPP----NFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKAQ--GPWTWKL 1805 (2014)
Q Consensus 1732 ~~~~v~~v~~l~~~v~~l~~~~p~----~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~T~~L 1805 (2014)
+.++|++++.++++++.++|+.|. .+.|+|||||.|.++..+...+|||||+|.|.++.++|+||.. |..|..|
T Consensus 2 ~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~l~i~vk~~~~G~~S~~l 81 (352)
T TIGR02160 2 HRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWA 81 (352)
T ss_pred eEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCCCCcEEEEEEEeCCCcchHHH
Confidence 457889999999999999999774 3689999999999975455567999999999888999999987 5678888
Q ss_pred HhhhccCCCCCCCCCcEEEEECCCCCCCCCcC--CCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEE
Q psy5584 1806 RNYFDPCNFNASEDQPKIRLEGPFGGGNQDWY--KFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWI 1883 (2014)
Q Consensus 1806 ~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~--~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~ 1883 (2014)
.+.++.+ ..+.|.||+|.+..+.. ..+++|||||||||||++|++++++.... .++|+|+|+
T Consensus 82 ~~~l~~G--------d~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~--------~~~v~l~~~ 145 (352)
T TIGR02160 82 NDEIRPG--------DTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEP--------RSTFTLVYG 145 (352)
T ss_pred HhcCCCC--------CEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCC--------CceEEEEEE
Confidence 7655544 38999999999764322 34789999999999999999999976532 248999999
Q ss_pred eCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHH
Q psy5584 1884 CPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFL 1963 (2014)
Q Consensus 1884 ~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il 1963 (2014)
+|+.+++. |.++|+++++.. ...++++..+|+.....+ ...||.+...+.
T Consensus 146 ~r~~~d~~-~~~el~~l~~~~-~~~~~~~~~~s~~~~~~~----------------------------~~~gr~~~~~l~ 195 (352)
T TIGR02160 146 NRRTASVM-FAEELADLKDKH-PQRFHLAHVLSREPREAP----------------------------LLSGRLDGERLA 195 (352)
T ss_pred eCCHHHHH-HHHHHHHHHHhC-cCcEEEEEEecCCCcCcc----------------------------cccCccCHHHHH
Confidence 99999875 788898887542 335788877776422110 012787754333
Q ss_pred HHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1964 KFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1964 ~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
+.+.+.........||+|||++|++++++.+.+. |++.-.+|.|.|+
T Consensus 196 ~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~----Gv~~~~i~~E~F~ 242 (352)
T TIGR02160 196 ALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGL----GVPAGRVHLELFY 242 (352)
T ss_pred HHHHhccCcccCCEEEEECCHHHHHHHHHHHHHc----CCCHHHEEEEecc
Confidence 3332221211235799999999999999999887 7888899999995
No 35
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.92 E-value=1.9e-24 Score=250.26 Aligned_cols=193 Identities=22% Similarity=0.352 Sum_probs=149.6
Q ss_pred EEEEcCCCEEEEEEecCCC---CcccCCCEEEEEecCCC----------------CCcccccccCCCCCC----CeEEEE
Q psy5584 1738 ETELLPSDVIKIRFYRPPN---FTYHSGQWVRLACTAFK----------------NAAYHSFTLTSAPHE----NFLSCH 1794 (2014)
Q Consensus 1738 ~v~~l~~~v~~l~~~~p~~---~~~~pGQyv~L~~p~~~----------------~~e~HPFTIaS~p~~----~~l~l~ 1794 (2014)
+.+.++++|.+++|..|.+ +.|+|||||.|.+|... ...+|||||+|+|.+ +.++|+
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 3567899999999999877 89999999999998531 134688999999964 689999
Q ss_pred EEecCCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCc---CCCceEEEEEeccchhhHHHHHHHHHhccCCCCCC
Q psy5584 1795 IKAQGPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDW---YKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYS 1871 (2014)
Q Consensus 1795 Ir~~G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~---~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~ 1871 (2014)
||..|.+|+.|++...... ..+..+.|+||||.+.... ..++++|||||||||||++|++++++....
T Consensus 82 vk~~G~~T~~L~~~~~~~~----~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~----- 152 (220)
T cd06197 82 VRKKGPVTGFLFQVARRLR----EQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRN----- 152 (220)
T ss_pred EEeCCCCCHHHHHhhhccc----CCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhccc-----
Confidence 9999999999998765321 1244899999999986443 356899999999999999999999986421
Q ss_pred CcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccc
Q psy5584 1872 GVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAV 1951 (2014)
Q Consensus 1872 ~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~ 1951 (2014)
..++|+|+|++|+.+++. +.++|.++... .++++.+.+
T Consensus 153 --~~~~v~l~~~~r~~~~~~-~~~el~~~~~~----~~~~~~~~~----------------------------------- 190 (220)
T cd06197 153 --TTWDITLLWSLREDDLPL-VMDTLVRFPGL----PVSTTLFIT----------------------------------- 190 (220)
T ss_pred --CCCcEEEEEEecchhhHH-HHHHHHhccCC----ceEEEEEEe-----------------------------------
Confidence 235899999999998765 66777554321 122222111
Q ss_pred cccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1952 NHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1952 ~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
+ .||+|||++|++++++.+++. .+|.|.|+
T Consensus 191 ---~---------------------~v~~CGP~~m~~~~~~~~~~~---------~~~~e~f~ 220 (220)
T cd06197 191 ---S---------------------EVYLCGPPALEKAVLEWLEGK---------KVHRESFA 220 (220)
T ss_pred ---c---------------------cEEEECcHHHHHHHHHHhhhc---------eeEecccC
Confidence 0 499999999999999998863 79999995
No 36
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.92 E-value=9.9e-24 Score=246.04 Aligned_cols=219 Identities=23% Similarity=0.336 Sum_probs=168.3
Q ss_pred EEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEec--CCccHHHHhhhccCCC
Q psy5584 1738 ETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQ--GPWTWKLRNYFDPCNF 1814 (2014)
Q Consensus 1738 ~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~~~ 1814 (2014)
+++.+++++..++++.|....|+||||+.|.+|..+...+|||||+|+|.+ +.++|+||.. |.+|+.|.+. ..
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~-~~--- 77 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDL-KP--- 77 (223)
T ss_pred ceEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcC-CC---
Confidence 355677999999999887788999999999998766678999999999976 8999999999 9999999865 22
Q ss_pred CCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHH
Q psy5584 1815 NASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFI 1894 (2014)
Q Consensus 1815 ~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~ 1894 (2014)
+.++.|.||||.+......++++|||||||||||++|+++++..... .++|+|+|++|+.+++. +.
T Consensus 78 -----G~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~--------~~~v~l~~~~r~~~~~~-~~ 143 (223)
T cd00322 78 -----GDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADKP--------GGEITLLYGARTPADLL-FL 143 (223)
T ss_pred -----CCEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhCC--------CCcEEEEEecCCHHHhh-HH
Confidence 33899999999986445677899999999999999999999987532 25899999999998765 78
Q ss_pred HHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCC
Q psy5584 1895 DVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVS 1974 (2014)
Q Consensus 1895 ~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~ 1974 (2014)
++|.++.+.. .++++++++++........ .++......+.. ......
T Consensus 144 ~el~~l~~~~--~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~---~~~~~~ 190 (223)
T cd00322 144 DELEELAKEG--PNFRLVLALSRESEAKLGP----------------------------GGRIDREAEILA---LLPDDS 190 (223)
T ss_pred HHHHHHHHhC--CCeEEEEEecCCCCCCCcc----------------------------cceeeHHHHHHh---hccccc
Confidence 8898887743 5678888887643211000 011111111111 111223
Q ss_pred eEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEe
Q psy5584 1975 KIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFE 2011 (2014)
Q Consensus 1975 ~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E 2011 (2014)
...||+|||++|++.+++.+.+. |++.-.+|.|
T Consensus 191 ~~~~yvCGp~~m~~~~~~~L~~~----gv~~~~i~~e 223 (223)
T cd00322 191 GALVYICGPPAMAKAVREALVSL----GVPEERIHTE 223 (223)
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCCHHHcccC
Confidence 56799999999999999999887 6677777766
No 37
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.91 E-value=1.7e-23 Score=243.18 Aligned_cols=213 Identities=26% Similarity=0.402 Sum_probs=164.8
Q ss_pred EeEEEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCC-CCcccccccCCCCCCCeEEEEEEec---CCccHHHHhh
Q psy5584 1733 ALDILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFK-NAAYHSFTLTSAPHENFLSCHIKAQ---GPWTWKLRNY 1808 (2014)
Q Consensus 1733 ~~~v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~-~~e~HPFTIaS~p~~~~l~l~Ir~~---G~~T~~L~~~ 1808 (2014)
.++|++++.++++++.++++.|..+.|+||||+.|.++..+ ..++|||||+|.|.++.+.|+||.. |+.|+.|.+.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~l 81 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRL 81 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCCCeEEEEEEEcCCCCcHhHHHHhC
Confidence 46789999999999999999988899999999999987654 3578999999999889999999985 7788888643
Q ss_pred hccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcc
Q psy5584 1809 FDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHK 1888 (2014)
Q Consensus 1809 ~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~ 1888 (2014)
+. +..+.|.||||.+.. .+++|||||||||||++|+++++..... .++++|+|++|+.+
T Consensus 82 -~~--------G~~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~~--------~~~v~l~~~~r~~~ 140 (218)
T cd06196 82 -QP--------GDTLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKGK--------LEGNTLIFANKTEK 140 (218)
T ss_pred -CC--------CCEEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCCC--------CceEEEEEecCCHH
Confidence 33 348999999999753 2579999999999999999999986421 25799999999998
Q ss_pred cHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHH
Q psy5584 1889 HFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQK 1968 (2014)
Q Consensus 1889 ~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~ 1968 (2014)
++. +.++|.++.. ++++.++|+.... + ...||.+. +++..+.
T Consensus 141 ~~~-~~~el~~l~~------~~~~~~~s~~~~~-------------------------~----~~~g~~~~-~~l~~~~- 182 (218)
T cd06196 141 DII-LKDELEKMLG------LKFINVVTDEKDP-------------------------G----YAHGRIDK-AFLKQHV- 182 (218)
T ss_pred HHh-hHHHHHHhhc------ceEEEEEcCCCCC-------------------------C----eeeeEECH-HHHHHhc-
Confidence 865 7788887742 4456666653110 0 01266653 2333322
Q ss_pred hCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEe
Q psy5584 1969 KHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFE 2011 (2014)
Q Consensus 1969 ~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E 2011 (2014)
+. ....||+|||++|++++++.+.+. |++.-++|+|
T Consensus 183 --~~-~~~~vyiCGp~~m~~~~~~~l~~~----G~~~~~i~~E 218 (218)
T cd06196 183 --TD-FNQHFYVCGPPPMEEAINGALKEL----GVPEDSIVFE 218 (218)
T ss_pred --CC-CCCEEEEECCHHHHHHHHHHHHHc----CCCHHHEecC
Confidence 11 134699999999999999999887 7788788887
No 38
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.91 E-value=2.5e-23 Score=263.82 Aligned_cols=235 Identities=17% Similarity=0.270 Sum_probs=181.2
Q ss_pred eeeeEeEEEEEEEcCCCEEEEEEecCC---CCcccCCCEEEEEecCCC--CCcccccccCCCCCCCeEEEEEEec--CCc
Q psy5584 1729 TKYMALDILETELLPSDVIKIRFYRPP---NFTYHSGQWVRLACTAFK--NAAYHSFTLTSAPHENFLSCHIKAQ--GPW 1801 (2014)
Q Consensus 1729 r~~~~~~v~~v~~l~~~v~~l~~~~p~---~~~~~pGQyv~L~~p~~~--~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~ 1801 (2014)
..+..++|++++.++++++.++++.+. .+.|+||||+.|.++..+ ..++|||||+|+|.++.++|+||.. |..
T Consensus 152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~~~l~~~Vk~~~~G~~ 231 (399)
T PRK13289 152 RGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNGKYYRISVKREAGGKV 231 (399)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCCCeEEEEEEECCCCee
Confidence 345567899999999999999999764 368999999999987443 2356999999999888999999998 999
Q ss_pred cHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEE
Q psy5584 1802 TWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFL 1881 (2014)
Q Consensus 1802 T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~li 1881 (2014)
|..|.+.++.+ ..+.|.||||.+..+....+++|||||||||||++|++++++.... .++|+|+
T Consensus 232 S~~L~~~l~~G--------d~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~--------~~~v~l~ 295 (399)
T PRK13289 232 SNYLHDHVNVG--------DVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQP--------KRPVHFI 295 (399)
T ss_pred hHHHhhcCCCC--------CEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCC--------CCCEEEE
Confidence 99998755554 3899999999987544456799999999999999999999986532 2589999
Q ss_pred EEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHH
Q psy5584 1882 WICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSS 1961 (2014)
Q Consensus 1882 W~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~ 1961 (2014)
|++|+.+++. +.++|+++++.. ++++++.++++.... + +.+. ...+.||.+.+.
T Consensus 296 ~~~r~~~~~~-~~~eL~~l~~~~--~~~~~~~~~s~~~~~-~---------------------~~~~-~~~~~g~i~~~~ 349 (399)
T PRK13289 296 HAARNGGVHA-FRDEVEALAARH--PNLKAHTWYREPTEQ-D---------------------RAGE-DFDSEGLMDLEW 349 (399)
T ss_pred EEeCChhhch-HHHHHHHHHHhC--CCcEEEEEECCCccc-c---------------------ccCC-cccccCcccHHH
Confidence 9999999975 889999987653 367888877764210 0 0000 001237777433
Q ss_pred HHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1962 FLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1962 il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
+ ... .+. ....||+|||++|++++++.+.+. |++.-.+|+|.||
T Consensus 350 l-~~~---~~~-~~~~vyiCGp~~m~~~v~~~L~~~----Gv~~~~I~~E~F~ 393 (399)
T PRK13289 350 L-EAW---LPD-PDADFYFCGPVPFMQFVAKQLLEL----GVPEERIHYEFFG 393 (399)
T ss_pred H-Hhh---CCC-CCCEEEEECCHHHHHHHHHHHHHc----CCCHHHeeeeccC
Confidence 2 222 111 245799999999999999999887 8888899999997
No 39
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.91 E-value=6e-23 Score=247.46 Aligned_cols=233 Identities=16% Similarity=0.192 Sum_probs=163.3
Q ss_pred eeEeEEEEEEEcCCCEEEEEEe--cC---CCCcccCCCEEEEEecCCCCCcccccccCCCCC-CCeEEEEEEecCCccHH
Q psy5584 1731 YMALDILETELLPSDVIKIRFY--RP---PNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPH-ENFLSCHIKAQGPWTWK 1804 (2014)
Q Consensus 1731 ~~~~~v~~v~~l~~~v~~l~~~--~p---~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~ 1804 (2014)
++.++|++++.+++++..++++ .| ..+.|+||||+.|.+|.. ..|||||+|+|. ++.++|+||..|.+|..
T Consensus 5 ~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~~~pySias~p~~~~~l~l~Ik~~G~~S~~ 81 (289)
T PRK08345 5 LHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGV---GEVPISICSSPTRKGFFELCIRRAGRVTTV 81 (289)
T ss_pred ceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCC---CceeeEecCCCCCCCEEEEEEEeCChHHHH
Confidence 3568899999999985555554 34 247799999999998754 248999999985 47899999999999998
Q ss_pred HHhhhccCCCCCCCCCcEEEEECCCCCCC-CCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEE
Q psy5584 1805 LRNYFDPCNFNASEDQPKIRLEGPFGGGN-QDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWI 1883 (2014)
Q Consensus 1805 L~~~~~~~~~~~~~~~~~v~IdGPyG~~~-~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~ 1883 (2014)
|.+ ++.+ .++.|+||||.+. .+....+++|||||||||||++|++++++.... ..++|+|+|+
T Consensus 82 L~~-l~~G--------d~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~-------~~~~v~l~~~ 145 (289)
T PRK08345 82 IHR-LKEG--------DIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW-------KYGNITLIYG 145 (289)
T ss_pred HHh-CCCC--------CEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCC-------CCCcEEEEEe
Confidence 864 3333 3899999999844 222234689999999999999999999876531 1258999999
Q ss_pred eCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHH
Q psy5584 1884 CPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFL 1963 (2014)
Q Consensus 1884 ~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il 1963 (2014)
+|+.+++. |.++|.++++.. .+++++.++++..+ ++... ....|....+..|+.+ ++
T Consensus 146 ~r~~~d~~-~~deL~~l~~~~--~~~~~~~~~s~~~~-~~~~~----------------~~~~~~~~~~~~g~v~--~~- 202 (289)
T PRK08345 146 AKYYEDLL-FYDELIKDLAEA--ENVKIIQSVTRDPE-WPGCH----------------GLPQGFIERVCKGVVT--DL- 202 (289)
T ss_pred cCCHHHhh-HHHHHHHHHhcC--CCEEEEEEecCCCC-CcCcc----------------ccccccccccccCchh--hh-
Confidence 99999886 788998886543 56888888887421 10000 0000100011113322 11
Q ss_pred HHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEe
Q psy5584 1964 KFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFE 2011 (2014)
Q Consensus 1964 ~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E 2011 (2014)
+.+......+..||+|||++|++++++.+.+. |++.-.+|.+
T Consensus 203 --~~~~~~~~~~~~vyiCGP~~m~~~v~~~L~~~----Gv~~~~i~~~ 244 (289)
T PRK08345 203 --FREANTDPKNTYAAICGPPVMYKFVFKELINR----GYRPERIYVT 244 (289)
T ss_pred --hhhcCCCccccEEEEECCHHHHHHHHHHHHHc----CCCHHHEEEE
Confidence 22222222356799999999999999999887 6665455543
No 40
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.91 E-value=4.4e-23 Score=244.34 Aligned_cols=214 Identities=21% Similarity=0.312 Sum_probs=158.4
Q ss_pred EEEEEEcCCCEEEEEEecCC----CCcccCCCEEEEEecCCCCCcccccccCCCCC-CCeEEEEEEecCCccHHHHhhhc
Q psy5584 1736 ILETELLPSDVIKIRFYRPP----NFTYHSGQWVRLACTAFKNAAYHSFTLTSAPH-ENFLSCHIKAQGPWTWKLRNYFD 1810 (2014)
Q Consensus 1736 v~~v~~l~~~v~~l~~~~p~----~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~L~~~~~ 1810 (2014)
|.+++.+++++..++++.+. .+.|+||||+.|.+|..+ .|||||+|+|. ++.++|+||..|.+|+.|.+ ++
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~~~~~l~~~Ik~~G~~S~~L~~-l~ 76 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPTRRGPLELTIRRVGRVTEALHE-LK 76 (253)
T ss_pred CceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCCCCCeEEEEEEeCChhhHHHHc-CC
Confidence 35678888988888777654 378999999999988643 39999999996 67899999999999999874 33
Q ss_pred cCCCCCCCCCcEEEEECCCCCCCCCcC-CCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCccc
Q psy5584 1811 PCNFNASEDQPKIRLEGPFGGGNQDWY-KFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKH 1889 (2014)
Q Consensus 1811 ~~~~~~~~~~~~v~IdGPyG~~~~~~~-~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~ 1889 (2014)
. +.++.|.||||.+..... .++++|||||||||||++|++++++..... .++++|+|++|+.++
T Consensus 77 ~--------G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~-------~~~i~Li~~~r~~~~ 141 (253)
T cd06221 77 P--------GDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRED-------YGKVTLLYGARTPED 141 (253)
T ss_pred C--------CCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhcccc-------CCcEEEEEecCChHH
Confidence 3 338999999999543222 568999999999999999999999875321 258999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHh
Q psy5584 1890 FEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKK 1969 (2014)
Q Consensus 1890 l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~ 1969 (2014)
+. +.++|.++.+. .++++++++++....+ .+ +.|+.+ +.+.. .
T Consensus 142 ~~-~~~~L~~l~~~---~~~~~~~~~s~~~~~~-----------------------~~-----~~g~v~--~~l~~---~ 184 (253)
T cd06221 142 LL-FKEELKEWAKR---SDVEVILTVDRAEEGW-----------------------TG-----NVGLVT--DLLPE---L 184 (253)
T ss_pred cc-hHHHHHHHHhc---CCeEEEEEeCCCCCCc-----------------------cC-----Cccccc--hhHHh---c
Confidence 85 78889988764 4577777777542111 11 114433 12222 1
Q ss_pred CCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEE
Q psy5584 1970 HSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHH 2009 (2014)
Q Consensus 1970 ~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h 2009 (2014)
........||+|||++|++++++++.+. |++.-.+|
T Consensus 185 ~~~~~~~~vyicGp~~mv~~~~~~L~~~----Gv~~~~i~ 220 (253)
T cd06221 185 TLDPDNTVAIVCGPPIMMRFVAKELLKL----GVPEEQIW 220 (253)
T ss_pred CCCcCCcEEEEECCHHHHHHHHHHHHHc----CCCHHHEE
Confidence 1111356799999999999999999887 55544444
No 41
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.91 E-value=6.3e-23 Score=259.07 Aligned_cols=233 Identities=15% Similarity=0.331 Sum_probs=175.8
Q ss_pred eeEeEEEEEEEcCCCEEEEEEecC--CCCcccCCCEEEEEecCC-----------------------------CCCcccc
Q psy5584 1731 YMALDILETELLPSDVIKIRFYRP--PNFTYHSGQWVRLACTAF-----------------------------KNAAYHS 1779 (2014)
Q Consensus 1731 ~~~~~v~~v~~l~~~v~~l~~~~p--~~~~~~pGQyv~L~~p~~-----------------------------~~~e~HP 1779 (2014)
.+.++|++++.+++++.+++++.| .++.|+|||||.|.+|.. +....||
T Consensus 133 ~~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 212 (409)
T PRK05464 133 KWECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRA 212 (409)
T ss_pred EEEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeee
Confidence 356889999999999999999987 467899999999998742 1245699
Q ss_pred cccCCCCCC-CeEEEEEEe-----------cCCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEe
Q psy5584 1780 FTLTSAPHE-NFLSCHIKA-----------QGPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGG 1847 (2014)
Q Consensus 1780 FTIaS~p~~-~~l~l~Ir~-----------~G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaG 1847 (2014)
|||+|+|.+ +.++|+||. .|..|..|++ ++. +..+.|.||+|.+... ...+++|||||
T Consensus 213 ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l~~--------Gd~v~v~gP~G~f~~~-~~~~~ivlIAg 282 (409)
T PRK05464 213 YSMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFS-LKP--------GDKVTISGPFGEFFAK-DTDAEMVFIGG 282 (409)
T ss_pred eccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHh-CCC--------CCEEEEEccccCcEec-CCCceEEEEEe
Confidence 999999965 589999996 3888888875 333 3489999999998754 35689999999
Q ss_pred ccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchh
Q psy5584 1848 GIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTT 1927 (2014)
Q Consensus 1848 GiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~ 1927 (2014)
||||||++|++++++..... .++|+|+|++|+.+++. +.++|+++++.. +++++++.+++.... +
T Consensus 283 GtGIaP~~sml~~~l~~~~~-------~~~v~L~~g~r~~~d~~-~~~el~~l~~~~--~~~~~~~~~s~~~~~-~---- 347 (409)
T PRK05464 283 GAGMAPMRSHIFDQLKRLKS-------KRKISFWYGARSLREMF-YVEDFDQLAAEN--PNFKWHVALSDPLPE-D---- 347 (409)
T ss_pred ccChhHHHHHHHHHHhCCCC-------CceEEEEEecCCHHHhh-HHHHHHHHHHhC--CCeEEEEEEcCCCCC-C----
Confidence 99999999999988765322 25899999999999876 678888887543 467777777653211 0
Q ss_pred hhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEE
Q psy5584 1928 MLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFI 2007 (2014)
Q Consensus 1928 ~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~ 2007 (2014)
.+.|. .|+.+ +.+.+..........+..||+|||++|++++++.+.+. |++.-.
T Consensus 348 ----------------~~~g~-----~G~v~-~~l~~~~l~~~~~~~~~~vyiCGP~~m~~av~~~L~~~----Gv~~~~ 401 (409)
T PRK05464 348 ----------------NWTGY-----TGFIH-NVLYENYLKDHEAPEDCEYYMCGPPMMNAAVIKMLKDL----GVEDEN 401 (409)
T ss_pred ----------------CCCCc-----cceeC-HHHHHhhhhhcCCCCCeEEEEECCHHHHHHHHHHHHHc----CCCHHH
Confidence 01121 14443 22223322222222456799999999999999999887 788889
Q ss_pred EEEecCC
Q psy5584 2008 HHFENFG 2014 (2014)
Q Consensus 2008 ~h~E~Fg 2014 (2014)
+|+|.||
T Consensus 402 I~~E~F~ 408 (409)
T PRK05464 402 ILLDDFG 408 (409)
T ss_pred EEEcccC
Confidence 9999997
No 42
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.90 E-value=2.2e-22 Score=236.22 Aligned_cols=223 Identities=22% Similarity=0.356 Sum_probs=180.6
Q ss_pred eeeEeEEEEEEEcCCCEEEEEEecCCCCc--ccCCCEEEEEecCCCCCcccccccCCCCCCC-eEEEEEEec--CCccHH
Q psy5584 1730 KYMALDILETELLPSDVIKIRFYRPPNFT--YHSGQWVRLACTAFKNAAYHSFTLTSAPHEN-FLSCHIKAQ--GPWTWK 1804 (2014)
Q Consensus 1730 ~~~~~~v~~v~~l~~~v~~l~~~~p~~~~--~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~~-~l~l~Ir~~--G~~T~~ 1804 (2014)
.....+|++++..+++++.+++.+|.+.. |+||||+.|.++..+...++.|||+|+|.++ .+.+.||.. |..|+.
T Consensus 4 ~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S~~ 83 (266)
T COG1018 4 GFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGSNW 83 (266)
T ss_pred ceEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCCcccHH
Confidence 35678899999999999999999998774 9999999999997777899999999999875 889999988 899999
Q ss_pred HHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEe
Q psy5584 1805 LRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWIC 1884 (2014)
Q Consensus 1805 L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~ 1884 (2014)
|++.++.+. ++.|.+|.|.+..+.....+++||||||||||++||++++..... .+|.|++++
T Consensus 84 Lh~~lk~Gd--------~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~~---------~~v~l~h~~ 146 (266)
T COG1018 84 LHDHLKVGD--------TLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRGP---------ADVVLVHAA 146 (266)
T ss_pred HHhcCCCCC--------EEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhCC---------CCEEEEEec
Confidence 998877664 899999999998766555689999999999999999999987643 489999999
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHH
Q psy5584 1885 PSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLK 1964 (2014)
Q Consensus 1885 R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~ 1964 (2014)
|+.+++. |.++ +++.... .+...++.|.... + .-||++...+
T Consensus 147 R~~~~~a-f~de-~~l~~~~-~~~~~~~~~~~~~--~-------------------------------~~g~~~~~~l-- 188 (266)
T COG1018 147 RTPADLA-FRDE-LELAAEL-PNALLLGLYTERG--K-------------------------------LQGRIDVSRL-- 188 (266)
T ss_pred CChhhcc-hhhH-HHHHhhC-CCCeeEEEEEecC--C-------------------------------ccccccHHHH--
Confidence 9999998 7776 6665432 2334555555310 0 0166664433
Q ss_pred HHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1965 FVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1965 ~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
....+... ..+|+|||.+|+++|+..+.+. |++.-.+|+|.|+
T Consensus 189 --~~~~~~~~-r~~y~CGp~~fm~av~~~l~~~----g~~~~~vh~E~F~ 231 (266)
T COG1018 189 --LSAAPDGG-REVYLCGPGPFMQAVRLALEAL----GVPDDRVHLEGFG 231 (266)
T ss_pred --hccCCCCC-CEEEEECCHHHHHHHHHHHHHc----CCChhcEEEeecC
Confidence 33333323 6799999999999999999998 6788899999996
No 43
>PRK05713 hypothetical protein; Provisional
Probab=99.90 E-value=1.3e-22 Score=247.71 Aligned_cols=213 Identities=17% Similarity=0.235 Sum_probs=163.4
Q ss_pred eEeEEEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCC-CCeEEEEEEe--cCCccHHHHhh
Q psy5584 1732 MALDILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPH-ENFLSCHIKA--QGPWTWKLRNY 1808 (2014)
Q Consensus 1732 ~~~~v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~-~~~l~l~Ir~--~G~~T~~L~~~ 1808 (2014)
..++|++++.++++++.|+++.+..+.|+||||+.|.++. ..+|||||+|.|. ++.++|+||. .|.+|..|. .
T Consensus 92 ~~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~---~~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~-~ 167 (312)
T PRK05713 92 LPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPGEDPFLEFHIDCSRPGAFCDAAR-Q 167 (312)
T ss_pred CCeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCC---CcccccccCcCCCCCCeEEEEEEEcCCCccchhhh-c
Confidence 4588999999999999999998778899999999999763 3589999999986 4789999985 477888774 3
Q ss_pred hccCCCCCCCCCcEEEEECCCCCCC-CCcC-CCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCC
Q psy5584 1809 FDPCNFNASEDQPKIRLEGPFGGGN-QDWY-KFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPS 1886 (2014)
Q Consensus 1809 ~~~~~~~~~~~~~~v~IdGPyG~~~-~~~~-~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~ 1886 (2014)
++. +.++.|.||+|.+. .... ..+++|||||||||||++|++++++.... .++|+|+|++|+
T Consensus 168 l~~--------Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~--------~~~v~l~~g~r~ 231 (312)
T PRK05713 168 LQV--------GDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGH--------QGPIRLLHLARD 231 (312)
T ss_pred CCC--------CCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC--------CCcEEEEEEcCc
Confidence 333 34899999998532 2212 35789999999999999999999876532 248999999999
Q ss_pred cccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHH
Q psy5584 1887 HKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFV 1966 (2014)
Q Consensus 1887 ~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l 1966 (2014)
.+++. +.++|+++++.. ++++++..+++. ..+++..+
T Consensus 232 ~~d~~-~~~el~~l~~~~--~~~~~~~~~~~~----------------------------------------~~~~l~~~ 268 (312)
T PRK05713 232 SAGHY-LAEPLAALAGRH--PQLSVELVTAAQ----------------------------------------LPAALAEL 268 (312)
T ss_pred hHHhh-hHHHHHHHHHHC--CCcEEEEEECcc----------------------------------------hhhhhhhc
Confidence 99986 788999988653 356666554431 00111111
Q ss_pred HHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1967 QKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1967 ~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
. .......||+|||++|++++++.+.+. |++.-.+|+|.|+
T Consensus 269 ~---~~~~~~~vyiCGp~~mv~~~~~~L~~~----Gv~~~~i~~e~F~ 309 (312)
T PRK05713 269 R---LVSRQTMALLCGSPASVERFARRLYLA----GLPRNQLLADVFL 309 (312)
T ss_pred c---CCCCCeEEEEeCCHHHHHHHHHHHHHc----CCCHHHeeecccc
Confidence 0 111245699999999999999999876 8888999999995
No 44
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.90 E-value=1.3e-22 Score=255.96 Aligned_cols=233 Identities=15% Similarity=0.325 Sum_probs=174.6
Q ss_pred eeEeEEEEEEEcCCCEEEEEEecCC--CCcccCCCEEEEEecCC-----------------------------CCCcccc
Q psy5584 1731 YMALDILETELLPSDVIKIRFYRPP--NFTYHSGQWVRLACTAF-----------------------------KNAAYHS 1779 (2014)
Q Consensus 1731 ~~~~~v~~v~~l~~~v~~l~~~~p~--~~~~~pGQyv~L~~p~~-----------------------------~~~e~HP 1779 (2014)
.+.++|++++.+++++.+++++.+. ++.|+||||+.|.+|.. +...+||
T Consensus 129 ~~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 208 (405)
T TIGR01941 129 KWECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRA 208 (405)
T ss_pred eeeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCcccee
Confidence 3567888999999999999998873 47899999999998742 1235699
Q ss_pred cccCCCCCC-CeEEEEEEec-----------CCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEe
Q psy5584 1780 FTLTSAPHE-NFLSCHIKAQ-----------GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGG 1847 (2014)
Q Consensus 1780 FTIaS~p~~-~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaG 1847 (2014)
|||+|+|.+ +.++|+||.. |..|..|.+ ++.+ ..+.|.||+|.+... ...+++|||||
T Consensus 209 ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l~~G--------d~v~i~gP~G~f~l~-~~~~~lvlIAg 278 (405)
T TIGR01941 209 YSMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFS-LKPG--------DKVTISGPFGEFFAK-DTDAEMVFIGG 278 (405)
T ss_pred ecCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhc-CCCc--------CEEEEEeccCCCeec-CCCCCEEEEec
Confidence 999999965 6899999973 888888875 4443 389999999998754 34578999999
Q ss_pred ccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchh
Q psy5584 1848 GIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTT 1927 (2014)
Q Consensus 1848 GiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~ 1927 (2014)
||||||++|++++++..... .++|+|+|++|+.+++. +.++|+++.+.. +++++++.+++....
T Consensus 279 GtGIaP~lsmi~~~l~~~~~-------~~~v~l~~g~R~~~dl~-~~~el~~l~~~~--~~~~~~~~~s~~~~~------ 342 (405)
T TIGR01941 279 GAGMAPMRSHIFDQLKRLKS-------KRKISFWYGARSLREMF-YQEDFDQLEAEN--PNFVWHVALSDPQPE------ 342 (405)
T ss_pred CcCcchHHHHHHHHHhcCCC-------CCeEEEEEecCCHHHHh-HHHHHHHHHHhC--CCeEEEEEeCCCCcc------
Confidence 99999999999987754222 25899999999999876 778888887543 567888777764211
Q ss_pred hhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEE
Q psy5584 1928 MLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFI 2007 (2014)
Q Consensus 1928 ~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~ 2007 (2014)
+.+.|.+ |+.. +.+...............||+|||++|++++++++.+. |++.-+
T Consensus 343 ---------------~~~~g~~-----G~v~-~~l~~~~l~~~~~~~~~~vylCGP~~m~~av~~~L~~~----Gv~~~~ 397 (405)
T TIGR01941 343 ---------------DNWTGYT-----GFIH-NVLYENYLKDHDAPEDCEFYMCGPPMMNAAVIKMLEDL----GVEREN 397 (405)
T ss_pred ---------------CCCCCcc-----ceeC-HHHHHhhhcccCCCCCeEEEEeCCHHHHHHHHHHHHHc----CCCHHH
Confidence 0112211 4433 12222222222222356799999999999999999887 788889
Q ss_pred EEEecCC
Q psy5584 2008 HHFENFG 2014 (2014)
Q Consensus 2008 ~h~E~Fg 2014 (2014)
+|+|.||
T Consensus 398 I~~E~F~ 404 (405)
T TIGR01941 398 ILLDDFG 404 (405)
T ss_pred EEEeccC
Confidence 9999997
No 45
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.89 E-value=1.9e-22 Score=233.20 Aligned_cols=203 Identities=17% Similarity=0.291 Sum_probs=158.6
Q ss_pred EEEEcCCCEEEEEEecCCCC---cccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEecC---CccHHHHhhhc
Q psy5584 1738 ETELLPSDVIKIRFYRPPNF---TYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQG---PWTWKLRNYFD 1810 (2014)
Q Consensus 1738 ~v~~l~~~v~~l~~~~p~~~---~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~G---~~T~~L~~~~~ 1810 (2014)
+++.+++++++++++.|... .|+||||+.|++|. ...|||||+|.|.+ +.+.|+||..+ +.|..|.+.++
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~~~ 78 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELLR 78 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhcCC
Confidence 46778899999999988653 89999999999876 46799999999876 88999999874 26777776544
Q ss_pred cCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccH
Q psy5584 1811 PCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHF 1890 (2014)
Q Consensus 1811 ~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l 1890 (2014)
.+ .++.|.||||.+... ...+++||||||+||||++|+++++... . ++|+++|++|+.+++
T Consensus 79 ~G--------d~v~i~gP~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~---~-------~~v~l~~~~r~~~~~ 139 (211)
T cd06185 79 VG--------DELEVSAPRNLFPLD-EAARRHLLIAGGIGITPILSMARALAAR---G-------ADFELHYAGRSREDA 139 (211)
T ss_pred CC--------CEEEEcCCccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhC---C-------CCEEEEEEeCCCcch
Confidence 43 389999999987653 2457999999999999999999998653 1 479999999999987
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhC
Q psy5584 1891 EWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKH 1970 (2014)
Q Consensus 1891 ~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~ 1970 (2014)
. +.++|+++.. .. ++++.+... +|++..+++...
T Consensus 140 ~-~~~~l~~~~~----~~--~~~~~~~~~-----------------------------------~~~~~~~~~~~~---- 173 (211)
T cd06185 140 A-FLDELAALPG----DR--VHLHFDDEG-----------------------------------GRLDLAALLAAP---- 173 (211)
T ss_pred h-HHHHHhhhcC----Cc--EEEEECCCC-----------------------------------CccCHHHHhccC----
Confidence 6 6677777651 22 334443310 455555555432
Q ss_pred CCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecCC
Q psy5584 1971 SYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENFG 2014 (2014)
Q Consensus 1971 ~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~Fg 2014 (2014)
. ....||+|||++|++++++.+.+. |++.-.+|.|.||
T Consensus 174 ~--~~~~vyicGp~~m~~~~~~~l~~~----gv~~~~i~~e~F~ 211 (211)
T cd06185 174 P--AGTHVYVCGPEGMMDAVRAAAAAL----GWPEARLHFERFA 211 (211)
T ss_pred C--CCCEEEEECCHHHHHHHHHHHHHc----CCChhheEeeecC
Confidence 2 135799999999999999999887 7888999999997
No 46
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.89 E-value=6.1e-22 Score=233.74 Aligned_cols=219 Identities=15% Similarity=0.210 Sum_probs=159.5
Q ss_pred eeEeEEEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCCCCeEEEEEEec--CCccHHHHhh
Q psy5584 1731 YMALDILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKAQ--GPWTWKLRNY 1808 (2014)
Q Consensus 1731 ~~~~~v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~T~~L~~~ 1808 (2014)
+..++|++++.++++++.++++.|. ..|+||||+.|.++..+...+|||||+|+|.++.++|+||.. |..|..|.+
T Consensus 4 ~~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~~~G~~S~~L~~- 81 (248)
T PRK10926 4 WVTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTVPEGKLSPRLAA- 81 (248)
T ss_pred cEEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEeCCCCcChHHHh-
Confidence 4568899999999999999998763 379999999999864444567999999999878999999997 889999874
Q ss_pred hccCCCCCCCCCcEEEEECCCCCC-CCCcC-CCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCC
Q psy5584 1809 FDPCNFNASEDQPKIRLEGPFGGG-NQDWY-KFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPS 1886 (2014)
Q Consensus 1809 ~~~~~~~~~~~~~~v~IdGPyG~~-~~~~~-~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~ 1886 (2014)
++.+ .++.|.||+|.+ ..+.. ..+++|||||||||||++|+++++..... .++|+|+|++|+
T Consensus 82 l~~G--------d~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~--------~~~v~l~~g~r~ 145 (248)
T PRK10926 82 LKPG--------DEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLER--------FKNLVLVHAARY 145 (248)
T ss_pred CCCC--------CEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCC--------CCcEEEEEeCCc
Confidence 4444 389999998443 32222 34689999999999999999999864321 248999999999
Q ss_pred cccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCH---HHHH
Q psy5584 1887 HKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDM---SSFL 1963 (2014)
Q Consensus 1887 ~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~---~~il 1963 (2014)
.+++. |.++|+++++.. +..++++..+|+.... + + ..||.+- ...+
T Consensus 146 ~~d~~-~~~el~~l~~~~-~~~~~v~~~~s~~~~~-~-----------------------~-----~~G~v~~~i~~~~l 194 (248)
T PRK10926 146 AADLS-YLPLMQELEQRY-EGKLRIQTVVSRETAP-G-----------------------S-----LTGRVPALIESGEL 194 (248)
T ss_pred HHHHH-HHHHHHHHHHhC-cCCEEEEEEECCCCCC-C-----------------------C-----cCCccchhhhcchH
Confidence 98876 789999887652 2467888888874210 0 0 0144431 0011
Q ss_pred HHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhh
Q psy5584 1964 KFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVN 1998 (2014)
Q Consensus 1964 ~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~ 1998 (2014)
..............||+|||++|++++++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~vy~CGp~~Mv~~~~~~l~~~~ 229 (248)
T PRK10926 195 EAAVGLPMDAETSHVMLCGNPQMVRDTQQLLKETR 229 (248)
T ss_pred HHHhcCCCCccCCEEEEECCHHHHHHHHHHHHHhc
Confidence 11111111113456999999999999999997643
No 47
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.89 E-value=5.1e-22 Score=233.44 Aligned_cols=223 Identities=18% Similarity=0.298 Sum_probs=167.1
Q ss_pred EEEEEEEcCCCEEEEEEecCC---CCcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEec--CCccHHHHhh
Q psy5584 1735 DILETELLPSDVIKIRFYRPP---NFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQ--GPWTWKLRNY 1808 (2014)
Q Consensus 1735 ~v~~v~~l~~~v~~l~~~~p~---~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~ 1808 (2014)
+|++++.+++++..++|+.+. .+.|+||||+.|.+|..+....|||||+|.|.+ +.++|+||.. |..|+.|.+
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~~- 80 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHS- 80 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHhc-
Confidence 577888999999999999875 378999999999999766678899999998864 5799999986 888888864
Q ss_pred hccCCCCCCCCCcEEEEECCCCCCCCCcCCC-ceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCc
Q psy5584 1809 FDPCNFNASEDQPKIRLEGPFGGGNQDWYKF-EVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSH 1887 (2014)
Q Consensus 1809 ~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~-~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~ 1887 (2014)
++. +.++.|.||||.+....... +++||||||+||||++++++++..... ..++|+|+|++|+.
T Consensus 81 ~~~--------G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~-------~~~~i~l~~~~r~~ 145 (234)
T cd06183 81 LKP--------GDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE-------DKTKISLLYANRTE 145 (234)
T ss_pred CCC--------CCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC-------cCcEEEEEEecCCH
Confidence 332 34899999999976433333 799999999999999999999986531 13589999999998
Q ss_pred ccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHH
Q psy5584 1888 KHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQ 1967 (2014)
Q Consensus 1888 ~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~ 1967 (2014)
+++ ++.++|+++.+.. ...+++++++|+....+ .+ +.||.+.. ++....
T Consensus 146 ~~~-~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~-----------------------~~-----~~g~~~~~-~l~~~~ 194 (234)
T cd06183 146 EDI-LLREELDELAKKH-PDRFKVHYVLSRPPEGW-----------------------KG-----GVGFITKE-MIKEHL 194 (234)
T ss_pred HHh-hhHHHHHHHHHhC-cccEEEEEEEcCCCcCC-----------------------cc-----ccceECHH-HHHHhC
Confidence 886 5889999887642 35688888887642111 11 22666532 223222
Q ss_pred HhCCCCCeEEEEEeCChhhHH-HHHHHHHhhhcCCCCCeEEEE
Q psy5584 1968 KKHSYVSKIGVFSCGPRPLTK-SIMSACEEVNKGRKLPYFIHH 2009 (2014)
Q Consensus 1968 ~~~~~~~~v~V~vCGP~~m~~-~vr~a~~~~~~~~g~~~~~~h 2009 (2014)
...+ .....||+|||++|++ ++++.+++. |++.-.+|
T Consensus 195 ~~~~-~~~~~~~icGp~~~~~~~~~~~l~~~----G~~~~~i~ 232 (234)
T cd06183 195 PPPP-SEDTLVLVCGPPPMIEGAVKGLLKEL----GYKKDNVF 232 (234)
T ss_pred CCCC-CCCeEEEEECCHHHHHHHHHHHHHHc----CCCHHHEE
Confidence 1101 1356799999999999 999999887 55554444
No 48
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.88 E-value=1.3e-21 Score=232.72 Aligned_cols=214 Identities=16% Similarity=0.199 Sum_probs=157.6
Q ss_pred eEeEEEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCCCCeEEEEEEecCCccHHHHhhhcc
Q psy5584 1732 MALDILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKAQGPWTWKLRNYFDP 1811 (2014)
Q Consensus 1732 ~~~~v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~~~l~l~Ir~~G~~T~~L~~~~~~ 1811 (2014)
.+++|++++.+++++..++++.| +.|+||||+.|.+|..+ .|||||++.+ ++.++|+||..|..|..|.+ ++.
T Consensus 8 ~~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~-~~~~~~~Ik~~G~~S~~L~~-l~~ 80 (263)
T PRK08221 8 AAYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG-DGYIDLTIRRVGKVTDEIFN-LKE 80 (263)
T ss_pred ccEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC-CCEEEEEEEeCCchhhHHHh-CCC
Confidence 45788999999999999999875 58999999999998543 3999999976 77899999999999998864 333
Q ss_pred CCCCCCCCCcEEEEECCCCC-CCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccH
Q psy5584 1812 CNFNASEDQPKIRLEGPFGG-GNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHF 1890 (2014)
Q Consensus 1812 ~~~~~~~~~~~v~IdGPyG~-~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l 1890 (2014)
+ ..+.|.||||. +..+....+++|||||||||||++|+++++..... ..++|+|+|++|+.+++
T Consensus 81 G--------d~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~-------~~~~v~L~~g~r~~~~l 145 (263)
T PRK08221 81 G--------DKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ-------EIKSLDLILGFKNPDDI 145 (263)
T ss_pred C--------CEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc-------cCceEEEEEecCCHHHh
Confidence 3 38999999998 44433345799999999999999999999876422 12589999999999988
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhC
Q psy5584 1891 EWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKH 1970 (2014)
Q Consensus 1891 ~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~ 1970 (2014)
. +.++|+++++.. .+++.+++.... +.+ +.||.+ +.+.... .
T Consensus 146 ~-~~~el~~~~~~~-----~~~~~~~~~~~~-----------------------~~~-----~~G~v~--~~l~~~~--~ 187 (263)
T PRK08221 146 L-FKEDLKRWREKI-----NLILTLDEGEEG-----------------------YRG-----NVGLVT--KYIPELT--L 187 (263)
T ss_pred h-HHHHHHHHhhcC-----cEEEEecCCCCC-----------------------Ccc-----CccccC--hhhHhcc--C
Confidence 6 778888887531 233334432110 111 226665 1222211 1
Q ss_pred CCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEE
Q psy5584 1971 SYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHH 2009 (2014)
Q Consensus 1971 ~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h 2009 (2014)
.......||+|||++|++++++.+++. |++...+|
T Consensus 188 ~~~~~~~vylCGp~~mv~~~~~~L~~~----Gv~~~~i~ 222 (263)
T PRK08221 188 KDIDNMQVIVVGPPIMMKFTVLEFLKR----GIKEENIW 222 (263)
T ss_pred CCcCCeEEEEECCHHHHHHHHHHHHHc----CCCHHHEE
Confidence 122356799999999999999999877 55544444
No 49
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.88 E-value=1.8e-21 Score=236.44 Aligned_cols=226 Identities=14% Similarity=0.163 Sum_probs=162.7
Q ss_pred eeEeEEEEEEEcC-----CCEEEEEEecCCCCcccCCCEEEEEecCCC------CCcccccccCCCCCC-----CeEEEE
Q psy5584 1731 YMALDILETELLP-----SDVIKIRFYRPPNFTYHSGQWVRLACTAFK------NAAYHSFTLTSAPHE-----NFLSCH 1794 (2014)
Q Consensus 1731 ~~~~~v~~v~~l~-----~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~------~~e~HPFTIaS~p~~-----~~l~l~ 1794 (2014)
.+.++|++++.++ +++.+|+++.+..+.|+||||+.|.+|... ...+|+|||||+|.+ ..++|+
T Consensus 24 ~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~ 103 (307)
T PLN03116 24 PYTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLC 103 (307)
T ss_pred CEEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEE
Confidence 4578899999987 899999999988999999999999877421 124799999999842 279999
Q ss_pred EEec---------------CCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCc--CCCceEEEEEeccchhhHHHH
Q psy5584 1795 IKAQ---------------GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDW--YKFEVAVMVGGGIGVTPYASI 1857 (2014)
Q Consensus 1795 Ir~~---------------G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~--~~~~~vvlIaGGiGITP~lsi 1857 (2014)
||.. |-.|..|.+ ++.+ ..+.|.||+|.+.... ...+++|||||||||||++||
T Consensus 104 Vr~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~G--------d~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sm 174 (307)
T PLN03116 104 VRRAVYYDPETGKEDPAKKGVCSNFLCD-AKPG--------DKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGF 174 (307)
T ss_pred EEEEEEecCCcCCCCCccCcchhhhHhh-CCCC--------CEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHH
Confidence 9863 667777776 5544 3899999999976421 344689999999999999999
Q ss_pred HHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccc
Q psy5584 1858 LNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQ 1937 (2014)
Q Consensus 1858 L~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~ 1937 (2014)
+++++...... .....+++|+|++|+.+++. |.++|+++++.. ..+++++..+++....+
T Consensus 175 l~~~l~~~~~~---~~~~~~v~L~~g~R~~~d~~-~~deL~~l~~~~-~~~~~~~~~~sr~~~~~--------------- 234 (307)
T PLN03116 175 LRRMFMEDVPA---FKFGGLAWLFLGVANSDSLL-YDDEFERYLKDY-PDNFRYDYALSREQKNK--------------- 234 (307)
T ss_pred HHHHHhhcccc---ccCCCcEEEEEecCCcccch-HHHHHHHHHHhC-CCcEEEEEEEccCCccc---------------
Confidence 99987643211 00124799999999999876 889999887653 23688888887642211
Q ss_pred cccccccccCcccccccCCCCHHHHHHHHH----HhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCC
Q psy5584 1938 RLSKSSMFTGLKAVNHFGRPDMSSFLKFVQ----KKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRK 2002 (2014)
Q Consensus 1938 ~~~~~~~~tgl~~~~~~GRPd~~~il~~l~----~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g 2002 (2014)
.| ++-.+.+.+.... .... ....||+|||++|++++++++.+.....|
T Consensus 235 --------~g-------~~g~v~~~l~~~~~~~~~~~~--~~~~vYiCGp~~mv~~v~~~L~~~~~~~g 286 (307)
T PLN03116 235 --------KG-------GKMYVQDKIEEYSDEIFKLLD--NGAHIYFCGLKGMMPGIQDTLKRVAEERG 286 (307)
T ss_pred --------CC-------CccchhhHHHHHHHHHHhhhc--CCcEEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 01 1111222232221 1121 24569999999999999998888654444
No 50
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.88 E-value=1.6e-21 Score=230.05 Aligned_cols=210 Identities=20% Similarity=0.286 Sum_probs=156.2
Q ss_pred EEEEEEcCCCEEEEEEecCC-CCcccCCCEEEEEecC-CCCCcccccccCCCC-CCCeEEEEEEecCCccHHHHhhhccC
Q psy5584 1736 ILETELLPSDVIKIRFYRPP-NFTYHSGQWVRLACTA-FKNAAYHSFTLTSAP-HENFLSCHIKAQGPWTWKLRNYFDPC 1812 (2014)
Q Consensus 1736 v~~v~~l~~~v~~l~~~~p~-~~~~~pGQyv~L~~p~-~~~~e~HPFTIaS~p-~~~~l~l~Ir~~G~~T~~L~~~~~~~ 1812 (2014)
|++++.+++++.+|+++.|. ...|+||||+.|.+|. .+...+|||||+|.| .++.++|+||..|.+|..|.+ ++
T Consensus 1 V~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~-l~-- 77 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVVGKGTRLLSE-LK-- 77 (246)
T ss_pred CcceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEECcchHHHhc-CC--
Confidence 35678899999999999887 6789999999999986 345678999999988 478999999999999988854 33
Q ss_pred CCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHH
Q psy5584 1813 NFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEW 1892 (2014)
Q Consensus 1813 ~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w 1892 (2014)
.+.++.|.||||.+.......+++|||||||||||++|+++++... . ++|+|+|++|+.+++.
T Consensus 78 ------~Gd~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~---~-------~~v~l~~~~r~~~d~~- 140 (246)
T cd06218 78 ------AGDELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER---G-------IKVTVLLGFRSADDLF- 140 (246)
T ss_pred ------CCCEEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc---C-------CceEEEEEccchhhhh-
Confidence 3348999999997443223578999999999999999999998762 1 4799999999999865
Q ss_pred HHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCC
Q psy5584 1893 FIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSY 1972 (2014)
Q Consensus 1893 ~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~ 1972 (2014)
+.++|+++.. ++ +++.... +.+.+ |+ +.+.+.+.....
T Consensus 141 ~~~eL~~l~~-------~~--~~~~~~~------------------------~~~~~-----g~--v~~~l~~~~~~~-- 178 (246)
T cd06218 141 LVEEFEALGA-------EV--YVATDDG------------------------SAGTK-----GF--VTDLLKELLAEA-- 178 (246)
T ss_pred hHHHHHhhCC-------cE--EEEcCCC------------------------CCCcc-----ee--hHHHHHHHhhcc--
Confidence 6787877732 12 2222110 01100 22 233343333221
Q ss_pred CCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecC
Q psy5584 1973 VSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013 (2014)
Q Consensus 1973 ~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~F 2013 (2014)
....||+|||++|++++++.+++. | ....++.|++
T Consensus 179 -~~~~vyiCGp~~mv~~~~~~L~~~----G-v~~~~~~~~~ 213 (246)
T cd06218 179 -RPDVVYACGPEPMLKAVAELAAER----G-VPCQVSLEER 213 (246)
T ss_pred -CCCEEEEECCHHHHHHHHHHHHhc----C-CCEEEEeccc
Confidence 346799999999999999999887 6 3467887765
No 51
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.88 E-value=2.6e-21 Score=229.09 Aligned_cols=210 Identities=19% Similarity=0.274 Sum_probs=157.0
Q ss_pred eeEeEEEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCCCCeEEEEEEecCCccHHHHhhhc
Q psy5584 1731 YMALDILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKAQGPWTWKLRNYFD 1810 (2014)
Q Consensus 1731 ~~~~~v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~~~l~l~Ir~~G~~T~~L~~~~~ 1810 (2014)
.+.++|++++.+++++..+++..|..+.|+||||+.|.+|..+...+|||||+|.| ++.++|+||..|.+|..|.+ ++
T Consensus 4 ~~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~l~l~Vk~~G~~t~~l~~-l~ 81 (250)
T PRK00054 4 PENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID-KNEITILYRKVGEGTKKLSK-LK 81 (250)
T ss_pred ceEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-CCEEEEEEEEcChHHHHHhc-CC
Confidence 35678899999999999999998777889999999999987666679999999998 88999999999999998864 33
Q ss_pred cCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccH
Q psy5584 1811 PCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHF 1890 (2014)
Q Consensus 1811 ~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l 1890 (2014)
. +.++.|.||||.........+++|||||||||||++|+++++... + ++++|+|++|+.+++
T Consensus 82 ~--------G~~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~---~-------~~v~l~~~~r~~~d~ 143 (250)
T PRK00054 82 E--------GDELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKK---G-------VEVTTVLGARTKDEV 143 (250)
T ss_pred C--------CCEEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHc---C-------CcEEEEEEcCCHHHh
Confidence 3 348999999998432223668999999999999999999998753 1 379999999999987
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhC
Q psy5584 1891 EWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKH 1970 (2014)
Q Consensus 1891 ~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~ 1970 (2014)
. +.++|+++.+ + +++.... + .|. .|+. .+++....
T Consensus 144 ~-~~~el~~~~~--------~--~~~~~~~-~-----------------------~~~-----~g~v--~~~l~~~~--- 178 (250)
T PRK00054 144 I-FEEEFAKVGD--------V--YVTTDDG-S-----------------------YGF-----KGFV--TDVLDELD--- 178 (250)
T ss_pred h-hHHHHHhcCC--------E--EEEecCC-C-----------------------CCc-----ccch--hHhHhhhc---
Confidence 6 6677776321 1 2221110 0 000 0221 22232221
Q ss_pred CCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEec
Q psy5584 1971 SYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFEN 2012 (2014)
Q Consensus 1971 ~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~ 2012 (2014)
. ....||+|||++|++++++.+++. |+ +..++.|.
T Consensus 179 ~--~~~~vyvCGp~~m~~~v~~~l~~~----Gv-~~~~~~e~ 213 (250)
T PRK00054 179 S--EYDAIYSCGPEIMMKKVVEILKEK----KV-PAYVSLER 213 (250)
T ss_pred c--CCCEEEEeCCHHHHHHHHHHHHHc----CC-cEEEEEcc
Confidence 1 123699999999999999999886 64 66677665
No 52
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.87 E-value=7.5e-21 Score=225.88 Aligned_cols=213 Identities=15% Similarity=0.222 Sum_probs=153.7
Q ss_pred EeEEEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCCCCeEEEEEEecCCccHHHHhhhccC
Q psy5584 1733 ALDILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKAQGPWTWKLRNYFDPC 1812 (2014)
Q Consensus 1733 ~~~v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~~~l~l~Ir~~G~~T~~L~~~~~~~ 1812 (2014)
.++|+++...+++++.++++.| +.|+||||+.|.+|.. ..|||||++. .++.++|+||..|..|..|.+ ++.+
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~---~~~pySi~~~-~~~~l~~~Vk~~G~~S~~L~~-l~~G 79 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKY---GEAPISVSGI-GEGYIDLTIRRVGKVTDEVFT-LKEG 79 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCC---CccceecCCC-CCCeEEEEEEeCchhhHHHHc-CCCC
Confidence 5778888888999999999765 6799999999998864 3589999985 568899999999999998864 3333
Q ss_pred CCCCCCCCcEEEEECCCCC-CCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHH
Q psy5584 1813 NFNASEDQPKIRLEGPFGG-GNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFE 1891 (2014)
Q Consensus 1813 ~~~~~~~~~~v~IdGPyG~-~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~ 1891 (2014)
.++.|.||||. +..+....+++|||||||||||++|++++++..... .++|+|+|++|+.+++.
T Consensus 80 --------d~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~-------~~~v~L~~~~r~~~~~~ 144 (261)
T TIGR02911 80 --------DNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKE-------IKSLNLILGFKTPDDIL 144 (261)
T ss_pred --------CEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCccc-------CceEEEEEecCCHHHhh
Confidence 38999999999 433333567999999999999999999998764321 25899999999999876
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCC
Q psy5584 1892 WFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHS 1971 (2014)
Q Consensus 1892 w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~ 1971 (2014)
+.++|+++++.. . ++..+....... .+ ..|+.+ ..+.... .+
T Consensus 145 -~~~eL~~l~~~~---~--~~~~~~~~~~~~-----------------------~~-----~~g~v~--~~l~~~~--~~ 186 (261)
T TIGR02911 145 -FKEDIAEWKGNI---N--LTLTLDEAEEDY-----------------------KG-----NIGLVT--KYIPELT--LK 186 (261)
T ss_pred -HHHHHHHHHhcC---c--EEEEEcCCCCCC-----------------------cC-----CeeccC--HhHHhcc--CC
Confidence 788888887531 2 333333321110 01 114433 1222211 11
Q ss_pred CCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEE
Q psy5584 1972 YVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHH 2009 (2014)
Q Consensus 1972 ~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h 2009 (2014)
+..+..||+|||++|++++++.+.+. |++...+|
T Consensus 187 ~~~~~~v~lCGp~~mv~~~~~~L~~~----Gv~~~~i~ 220 (261)
T TIGR02911 187 DIEEVQAIVVGPPIMMKFTVQELLKK----GIKEENIW 220 (261)
T ss_pred CccceEEEEECCHHHHHHHHHHHHHc----CCCHHHEE
Confidence 22356799999999999999999887 55443333
No 53
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.87 E-value=4.4e-21 Score=224.79 Aligned_cols=199 Identities=22% Similarity=0.312 Sum_probs=151.3
Q ss_pred EEEEEEEcCCCEEEEEEecCCCCcccCCCEEEEEecCCCCCcccccccCCCCCCCeEEEEEEecCCccHHHHhhhccCCC
Q psy5584 1735 DILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKAQGPWTWKLRNYFDPCNF 1814 (2014)
Q Consensus 1735 ~v~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~~~l~l~Ir~~G~~T~~L~~~~~~~~~ 1814 (2014)
+|++++.++++++.++++.| +.|+||||+.|.+|.. ..|||||+|.| +.++|+||..|.+|..|.+ ++.+
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~--~~l~~~v~~~G~~s~~L~~-l~~G-- 71 (233)
T cd06220 2 TIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID--GPNSITVKKVGEATSALHD-LKEG-- 71 (233)
T ss_pred EEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC--CeEEEEEEecChHHHHHHh-cCCC--
Confidence 57888999999999999875 5899999999998754 35999999998 8899999999999999986 4443
Q ss_pred CCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHH
Q psy5584 1815 NASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFI 1894 (2014)
Q Consensus 1815 ~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~ 1894 (2014)
.++.|.||||.+.. . +.+++|||||||||||++|+++++... ++|+|+|++|+.+++. +.
T Consensus 72 ------d~v~i~gP~G~~f~-~-~~~~~vliAgGtGitP~~sil~~~~~~-----------~~i~l~~~~r~~~d~~-~~ 131 (233)
T cd06220 72 ------DKLGIRGPYGNGFE-L-VGGKVLLIGGGIGIAPLAPLAERLKKA-----------ADVTVLLGARTKEELL-FL 131 (233)
T ss_pred ------CEEEEECcCCCCcc-C-CCCeEEEEecCcChHHHHHHHHHHHhc-----------CCEEEEEecCChHHCh-hH
Confidence 38999999998432 2 268999999999999999999998753 3799999999999876 56
Q ss_pred HHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCC
Q psy5584 1895 DVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVS 1974 (2014)
Q Consensus 1895 ~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~ 1974 (2014)
++|++. .. +.+ .+.. . +.+. .|+.+ +++..+. .. .
T Consensus 132 ~eL~~~------~~--~~~-~~~~-~------------------------~~~~-----~g~~~--~~l~~~~---~~-~ 166 (233)
T cd06220 132 DRLRKS------DE--LIV-TTDD-G------------------------SYGF-----KGFVT--DLLKELD---LE-E 166 (233)
T ss_pred HHHhhC------Cc--EEE-EEeC-C------------------------CCcc-----cceeh--HHHhhhc---cc-C
Confidence 666651 11 222 2211 0 0110 13333 3333332 11 2
Q ss_pred eEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecC
Q psy5584 1975 KIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013 (2014)
Q Consensus 1975 ~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~F 2013 (2014)
...||+|||++|++++++.+.+. |+ ..++|.|.|
T Consensus 167 ~~~vyicGp~~m~~~~~~~L~~~----g~-~~~i~~e~f 200 (233)
T cd06220 167 YDAIYVCGPEIMMYKVLEILDER----GV-RAQFSLERY 200 (233)
T ss_pred CCEEEEECCHHHHHHHHHHHHhc----CC-cEEEEeccc
Confidence 24699999999999999999887 65 789999998
No 54
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.86 E-value=1.4e-20 Score=227.99 Aligned_cols=224 Identities=16% Similarity=0.226 Sum_probs=162.5
Q ss_pred eeeeEeEEEEEEEcCCCEEEEEEecCC--CCcccCCCEEEEEecCC---CCCcccccccCCCCC-CCeEEEEEEec--CC
Q psy5584 1729 TKYMALDILETELLPSDVIKIRFYRPP--NFTYHSGQWVRLACTAF---KNAAYHSFTLTSAPH-ENFLSCHIKAQ--GP 1800 (2014)
Q Consensus 1729 r~~~~~~v~~v~~l~~~v~~l~~~~p~--~~~~~pGQyv~L~~p~~---~~~e~HPFTIaS~p~-~~~l~l~Ir~~--G~ 1800 (2014)
..+..++|++++.+++++..++|+.|. .+.++||||+.+.++.. ....+|||||+|.|+ ++.++|+||.. |.
T Consensus 50 ~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~G~ 129 (325)
T PTZ00274 50 QRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDGL 129 (325)
T ss_pred CceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCCCc
Confidence 346789999999999999999998764 68999999999877632 124579999999996 57899999995 77
Q ss_pred ccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEE
Q psy5584 1801 WTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYF 1880 (2014)
Q Consensus 1801 ~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~l 1880 (2014)
.|..|++ ++.+ ..+.|.||+|.+.......+++|||||||||||++||+++++...... ......+|+|
T Consensus 130 ~S~~L~~-lk~G--------d~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~--~~~~~~~v~L 198 (325)
T PTZ00274 130 MTNHLFG-MHVG--------DKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDS--GEVDRTKLSF 198 (325)
T ss_pred ccHHHhc-CCCC--------CEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhccccc--ccCCCCeEEE
Confidence 7999985 4444 389999998876533344579999999999999999999988653211 0112348999
Q ss_pred EEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHH
Q psy5584 1881 LWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMS 1960 (2014)
Q Consensus 1881 iW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~ 1960 (2014)
+|++|+.+++. |.++|+++++.. .++++++..+++.... +.+.| +.||.+-.
T Consensus 199 lyg~R~~~di~-~~~eL~~La~~~-~~~f~v~~~ls~~~~~---------------------~~w~g-----~~G~V~~~ 250 (325)
T PTZ00274 199 LFCNRTERHIL-LKGLFDDLARRY-SNRFKVYYTIDQAVEP---------------------DKWNH-----FLGYVTKE 250 (325)
T ss_pred EEEcCCHHHhh-HHHHHHHHHHhC-CCcEEEEEEeCCCCcc---------------------cCCCC-----CCCccCHH
Confidence 99999999986 889999997653 2367887777753211 11222 23777732
Q ss_pred HHHHHHHHhCCCCCeEEEEEeCChhhHHHHHHH
Q psy5584 1961 SFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSA 1993 (2014)
Q Consensus 1961 ~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a 1993 (2014)
++........ .....||+|||++|+++|...
T Consensus 251 -ll~~~~~~~~-~~~~~vylCGPp~Mm~av~~~ 281 (325)
T PTZ00274 251 -MVRRTMPAPE-EKKKIIMLCGPDQLLNHVAGT 281 (325)
T ss_pred -HHHHhcCCCc-cCCcEEEEeCCHHHHHHhcCC
Confidence 2232221111 123469999999999999654
No 55
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.86 E-value=7.7e-21 Score=224.40 Aligned_cols=199 Identities=22% Similarity=0.274 Sum_probs=146.8
Q ss_pred EEEEEEcCCCEEEEEEecCC-CCcccCCCEEEEEecCCCCCcccccccCCCC-CCCeEEEEEEecCCccHHHHhhhccCC
Q psy5584 1736 ILETELLPSDVIKIRFYRPP-NFTYHSGQWVRLACTAFKNAAYHSFTLTSAP-HENFLSCHIKAQGPWTWKLRNYFDPCN 1813 (2014)
Q Consensus 1736 v~~v~~l~~~v~~l~~~~p~-~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p-~~~~l~l~Ir~~G~~T~~L~~~~~~~~ 1813 (2014)
|++++.+++++++++|+.|. .+.|+||||++|.+|..+...+|||||+|.| ++++++|+||..|..|+.|.+ ++.
T Consensus 1 i~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~-~~~-- 77 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAE-LKP-- 77 (243)
T ss_pred CceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEcCchHHHHHh-CCC--
Confidence 35677889999999999875 4689999999999976455688999999997 468999999999999998864 333
Q ss_pred CCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHH
Q psy5584 1814 FNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWF 1893 (2014)
Q Consensus 1814 ~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~ 1893 (2014)
+..+.|.||||.+.......+++|||||||||||++++++++... + ++++++|++|+.+++. +
T Consensus 78 ------G~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~---~-------~~v~l~~~~r~~~d~~-~ 140 (243)
T cd06192 78 ------GEKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN---G-------NKVTVLAGAKKAKEEF-L 140 (243)
T ss_pred ------CCEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC---C-------CeEEEEEecCcHHHHH-H
Confidence 338999999998765433468999999999999999999998754 1 4899999999999865 6
Q ss_pred HHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCC
Q psy5584 1894 IDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYV 1973 (2014)
Q Consensus 1894 ~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~ 1973 (2014)
.++|.++. ...++++... + .|.. |+.... ...+ . ..
T Consensus 141 ~~el~~~~--------~~~~~~~~~~--~-----------------------~~~~-----g~v~~~--~~~~-~-~~-- 176 (243)
T cd06192 141 DEYFELPA--------DVEIWTTDDG--E-----------------------LGLE-----GKVTDS--DKPI-P-LE-- 176 (243)
T ss_pred HHHHHhhc--------CeEEEEecCC--C-----------------------Cccc-----eeechh--hhhh-h-cc--
Confidence 77777652 1223333311 0 0100 222211 0111 1 11
Q ss_pred CeEEEEEeCChhhHHHHHHHHHhhh
Q psy5584 1974 SKIGVFSCGPRPLTKSIMSACEEVN 1998 (2014)
Q Consensus 1974 ~~v~V~vCGP~~m~~~vr~a~~~~~ 1998 (2014)
....||+|||++|++++++.+++.+
T Consensus 177 ~~~~v~icGp~~mv~~~~~~l~~~g 201 (243)
T cd06192 177 DVDRIIVAGSDIMMKAVVEALDEWL 201 (243)
T ss_pred cCCEEEEECCHHHHHHHHHHHHhhc
Confidence 2346999999999999999998874
No 56
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.86 E-value=2.1e-20 Score=226.00 Aligned_cols=227 Identities=18% Similarity=0.284 Sum_probs=161.7
Q ss_pred eeEeEEEEEEEcCCCEEEEEEecCC---CCcccCCCEEEEEecCCCC----CcccccccCCCCC-CCeEEEEEEec----
Q psy5584 1731 YMALDILETELLPSDVIKIRFYRPP---NFTYHSGQWVRLACTAFKN----AAYHSFTLTSAPH-ENFLSCHIKAQ---- 1798 (2014)
Q Consensus 1731 ~~~~~v~~v~~l~~~v~~l~~~~p~---~~~~~pGQyv~L~~p~~~~----~e~HPFTIaS~p~-~~~l~l~Ir~~---- 1798 (2014)
...++|++++.+++++..++|+.+. .+.|+||||+.|.++..+. ...||||++|.|. ++.++|+||..
T Consensus 33 ~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~~~~~ 112 (300)
T PTZ00319 33 FQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYFKGV 112 (300)
T ss_pred eEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEeccCC
Confidence 4568899999999999999998643 3679999999999975322 4579999999885 57899999986
Q ss_pred -------CCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCc---------------CCCceEEEEEeccchhhHHH
Q psy5584 1799 -------GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDW---------------YKFEVAVMVGGGIGVTPYAS 1856 (2014)
Q Consensus 1799 -------G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~---------------~~~~~vvlIaGGiGITP~ls 1856 (2014)
|..|+.|.+ ++.+ ..+.|.||+|.+...- .+.+++|||||||||||++|
T Consensus 113 ~~~~~~~G~~S~~L~~-l~~G--------d~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~s 183 (300)
T PTZ00319 113 HPSFPNGGRLSQHLYH-MKLG--------DKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQ 183 (300)
T ss_pred CCCCCCCCChhhhhhc-CCCC--------CEEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHH
Confidence 888888853 4443 4899999999874221 12358999999999999999
Q ss_pred HHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhccc
Q psy5584 1857 ILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHF 1936 (2014)
Q Consensus 1857 iL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~ 1936 (2014)
+++.+...... .++|+|+|++|+.+++. +.++|.++++. ++++++..+++....
T Consensus 184 ml~~l~~~~~~-------~~~i~liyg~r~~~dl~-~~~eL~~~~~~---~~~~~~~~~~~~~~~--------------- 237 (300)
T PTZ00319 184 IIHAIKKNKED-------RTKVFLVYANQTEDDIL-LRKELDEAAKD---PRFHVWYTLDREATP--------------- 237 (300)
T ss_pred HHHHHHhCCCC-------CceEEEEEecCCHHHhh-HHHHHHHHhhC---CCEEEEEEECCCCCC---------------
Confidence 99999865221 25899999999999987 66777775432 467777777663111
Q ss_pred ccccccccccCcccccccCCCCHHHHHHHHHHhC----CCCCeEEEEEeCChhhHH-HHHHHHHhhhcCCCCCeEEEE
Q psy5584 1937 QRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKH----SYVSKIGVFSCGPRPLTK-SIMSACEEVNKGRKLPYFIHH 2009 (2014)
Q Consensus 1937 ~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~----~~~~~v~V~vCGP~~m~~-~vr~a~~~~~~~~g~~~~~~h 2009 (2014)
.+.| +.||.+-. +++...... .+..+..||+|||++|++ ++++.+.+. |++.-++|
T Consensus 238 -------~~~~-----~~G~v~~~-~l~~~~~~~~~~~~~~~~~~vyiCGp~~mv~~~~~~~L~~~----G~~~~~i~ 298 (300)
T PTZ00319 238 -------EWKY-----GTGYVDEE-MLRAHLPVPDPQNSGIKKVMALMCGPPPMLQMAVKPNLEKI----GYTADNMF 298 (300)
T ss_pred -------Cccc-----ccceeCHH-HHHhhcCCccccccccCCeEEEEECCHHHHHHHHHHHHHHc----CCCHHHEE
Confidence 0111 12666532 222221111 111356799999999999 578888777 65555555
No 57
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.86 E-value=2.4e-20 Score=224.88 Aligned_cols=223 Identities=16% Similarity=0.199 Sum_probs=160.0
Q ss_pred eeEeEEEEEEEcC-----CCEEEEEEecCCCCcccCCCEEEEEecCCC-----CCcccccccCCCCCC-----CeEEEEE
Q psy5584 1731 YMALDILETELLP-----SDVIKIRFYRPPNFTYHSGQWVRLACTAFK-----NAAYHSFTLTSAPHE-----NFLSCHI 1795 (2014)
Q Consensus 1731 ~~~~~v~~v~~l~-----~~v~~l~~~~p~~~~~~pGQyv~L~~p~~~-----~~e~HPFTIaS~p~~-----~~l~l~I 1795 (2014)
...++|++++.++ +++++++++.+..+.|+|||||.|.+|... ....|||||+|.|.+ +.++|+|
T Consensus 8 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~V 87 (286)
T cd06208 8 PLIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCV 87 (286)
T ss_pred CeEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEE
Confidence 3557888999887 699999999877899999999999876432 124799999998843 5899999
Q ss_pred Eec------------CCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCc-CCCceEEEEEeccchhhHHHHHHHHH
Q psy5584 1796 KAQ------------GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDW-YKFEVAVMVGGGIGVTPYASILNDLV 1862 (2014)
Q Consensus 1796 r~~------------G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~-~~~~~vvlIaGGiGITP~lsiL~~l~ 1862 (2014)
|.. |..|..|.+ ++. +.+|.|.||+|.+.... ...+++|||||||||||++|++++++
T Consensus 88 k~~~~~~~~~~~~~~G~~S~~L~~-l~~--------Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~ 158 (286)
T cd06208 88 KRLVYTDPETDETKKGVCSNYLCD-LKP--------GDDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLF 158 (286)
T ss_pred EEEEEecCCCCceeccchHHHHhh-CCC--------CCEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHH
Confidence 987 678888876 333 33899999999976432 23468999999999999999999988
Q ss_pred hccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhccccccccc
Q psy5584 1863 FGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKS 1942 (2014)
Q Consensus 1863 ~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~ 1942 (2014)
...... ....++|+|+|++|+.+++. +.++|+++++.. ..++++++.+|+....+
T Consensus 159 ~~~~~~---~~~~~~v~L~~g~r~~~d~~-~~~el~~l~~~~-~~~~~~~~~~sr~~~~~-------------------- 213 (286)
T cd06208 159 REKHAD---YKFTGLAWLFFGVPNSDSLL-YDDELEKYPKQY-PDNFRIDYAFSREQKNA-------------------- 213 (286)
T ss_pred Hhhhcc---cCCCCCEEEEEEecCccchh-HHHHHHHHHHhC-CCcEEEEEEEcCCCCCC--------------------
Confidence 652100 01235799999999999976 788899887642 23688888888743211
Q ss_pred ccccCcccccccCCCCHHHHHH----HHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhh
Q psy5584 1943 SMFTGLKAVNHFGRPDMSSFLK----FVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVN 1998 (2014)
Q Consensus 1943 ~~~tgl~~~~~~GRPd~~~il~----~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~ 1998 (2014)
.|.+ |+. .+.+. .+.+.... ....||+|||++|+++|++++.++-
T Consensus 214 ---~g~~-----g~v--~~~i~~~~~~l~~~l~~-~~~~vYiCGp~~m~~~v~~~L~~~~ 262 (286)
T cd06208 214 ---DGGK-----MYV--QDRIAEYAEEIWNLLDK-DNTHVYICGLKGMEPGVDDALTSVA 262 (286)
T ss_pred ---CCCc-----eeh--hhHHHHhHHHHHHHHhc-CCcEEEEeCCchHHHHHHHHHHHHH
Confidence 1100 111 11221 11111111 2456999999999999999998843
No 58
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.85 E-value=3.5e-20 Score=219.10 Aligned_cols=198 Identities=21% Similarity=0.255 Sum_probs=146.6
Q ss_pred EEEEEEEcCCCEEEEEEecCC-CCcccCCCEEEEEecCCCCCcccccccCCCC-CCCeEEEEEEecCCccHHHHhhhccC
Q psy5584 1735 DILETELLPSDVIKIRFYRPP-NFTYHSGQWVRLACTAFKNAAYHSFTLTSAP-HENFLSCHIKAQGPWTWKLRNYFDPC 1812 (2014)
Q Consensus 1735 ~v~~v~~l~~~v~~l~~~~p~-~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p-~~~~l~l~Ir~~G~~T~~L~~~~~~~ 1812 (2014)
+|++++.++++++.++++.|. ...|+||||+.|+++. ..++|||||+|+| +++.++|+||..|..|..|.+ ++.+
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~--~~~~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~-l~~G 78 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADE--KGERIPLTIADWDPEKGTITIVVQVVGKSTRELAT-LEEG 78 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCC--CCCccceEeEEEcCCCCEEEEEEEeCCchHHHHHh-cCCC
Confidence 577888999999999999875 3579999999999863 3467999999987 467899999999999988754 3333
Q ss_pred CCCCCCCCcEE-EEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHH
Q psy5584 1813 NFNASEDQPKI-RLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFE 1891 (2014)
Q Consensus 1813 ~~~~~~~~~~v-~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~ 1891 (2014)
.++ .|+||||.+... ...+++||||||+||||++|+++++... + ++|+|+|++|+.+++.
T Consensus 79 --------~~v~~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~l~~~~~~---~-------~~v~l~~~~r~~~~~~ 139 (248)
T cd06219 79 --------DKIHDVVGPLGKPSEI-ENYGTVVFVGGGVGIAPIYPIAKALKEA---G-------NRVITIIGARTKDLVI 139 (248)
T ss_pred --------CEeeeeecCCCCCeec-CCCCeEEEEeCcccHHHHHHHHHHHHHc---C-------CeEEEEEEcCCHHHhh
Confidence 378 699999998643 4567999999999999999999998753 1 4799999999999876
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCC
Q psy5584 1892 WFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHS 1971 (2014)
Q Consensus 1892 w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~ 1971 (2014)
|.++|.++.+. + .+.++.. +.|. .|+. .+.+.+......
T Consensus 140 -~~~el~~l~~~-------~-~~~~~~~-------------------------~~~~-----~g~v--~~~l~~~~~~~~ 178 (248)
T cd06219 140 -LEDEFRAVSDE-------L-IITTDDG-------------------------SYGE-----KGFV--TDPLKELIESGE 178 (248)
T ss_pred -hHHHHHhhcCe-------E-EEEeCCC-------------------------CCCc-----cccc--hHHHHHHHhccC
Confidence 77888887532 1 2223210 0010 0222 123333332222
Q ss_pred CCCeEEEEEeCChhhHHHHHHHHHhh
Q psy5584 1972 YVSKIGVFSCGPRPLTKSIMSACEEV 1997 (2014)
Q Consensus 1972 ~~~~v~V~vCGP~~m~~~vr~a~~~~ 1997 (2014)
....||+|||++|++.+++.+++.
T Consensus 179 --~~~~vyiCGP~~m~~~~~~~l~~~ 202 (248)
T cd06219 179 --KVDLVIAIGPPIMMKAVSELTRPY 202 (248)
T ss_pred --CccEEEEECCHHHHHHHHHHHHHc
Confidence 233699999999999999999875
No 59
>PRK05802 hypothetical protein; Provisional
Probab=99.85 E-value=7.3e-20 Score=222.12 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=124.9
Q ss_pred eeeeEeEEEEEEEcCCCEEEEEEecCCC---CcccCCCEEEEEecCCCCCcccccccCCCCC-CCeEEEEEEecCCccHH
Q psy5584 1729 TKYMALDILETELLPSDVIKIRFYRPPN---FTYHSGQWVRLACTAFKNAAYHSFTLTSAPH-ENFLSCHIKAQGPWTWK 1804 (2014)
Q Consensus 1729 r~~~~~~v~~v~~l~~~v~~l~~~~p~~---~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~ 1804 (2014)
+..+.++|++++.++++++.++|+.|.. ..++|||||.|++|..+.+..|||||+++|. ++.++|+||..|..|+.
T Consensus 62 ~~~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~G~~T~~ 141 (320)
T PRK05802 62 RKTYECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIRGVKTKK 141 (320)
T ss_pred cccEeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEecChhHHH
Confidence 3456788999999999999999998754 3479999999999865556679999999985 57899999999999999
Q ss_pred HHhhhccCCCCCCCCCcEEEEECCCCCCC--CC---cCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEE
Q psy5584 1805 LRNYFDPCNFNASEDQPKIRLEGPFGGGN--QD---WYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVY 1879 (2014)
Q Consensus 1805 L~~~~~~~~~~~~~~~~~v~IdGPyG~~~--~~---~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~ 1879 (2014)
|.+ ++. +..+.|.||||.+. .. ....+++|+|||||||||++++++++..+. .+|+
T Consensus 142 L~~-l~~--------Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~----------~~v~ 202 (320)
T PRK05802 142 IAK-LNK--------GDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG----------NKII 202 (320)
T ss_pred Hhc-CCC--------CCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC----------CcEE
Confidence 974 333 33899999997642 11 123568999999999999999999997642 3799
Q ss_pred EEEEeCCcccHHHHHHHHHHHHh
Q psy5584 1880 FLWICPSHKHFEWFIDVLRDVEK 1902 (2014)
Q Consensus 1880 liW~~R~~~~l~w~~~~L~~l~~ 1902 (2014)
++|++|+.+++. +.++|+++..
T Consensus 203 li~g~r~~~~~~-~~~el~~~~~ 224 (320)
T PRK05802 203 VIIDKGPFKNNF-IKEYLELYNI 224 (320)
T ss_pred EEEeCCCHHHHH-HHHHHHHhhC
Confidence 999999999986 6788877653
No 60
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.85 E-value=6.8e-20 Score=223.93 Aligned_cols=224 Identities=13% Similarity=0.201 Sum_probs=158.1
Q ss_pred eEeEEEEEEEcCC-----CEEEEEEecCCCCcccCCCEEEEEecCCC----CCcccccccCCCCC-----CCeEEEEEEe
Q psy5584 1732 MALDILETELLPS-----DVIKIRFYRPPNFTYHSGQWVRLACTAFK----NAAYHSFTLTSAPH-----ENFLSCHIKA 1797 (2014)
Q Consensus 1732 ~~~~v~~v~~l~~-----~v~~l~~~~p~~~~~~pGQyv~L~~p~~~----~~e~HPFTIaS~p~-----~~~l~l~Ir~ 1797 (2014)
+..+++....+.. ++.+|+|..+..+.|+||||+.|.+|... ....|||||+|+|. +++++|+||.
T Consensus 91 ~~~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~ 170 (367)
T PLN03115 91 YTGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKR 170 (367)
T ss_pred eEEEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEE
Confidence 4456666555543 89999999888899999999999987532 23578999999983 3589999996
Q ss_pred c-----------CCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCc-CCCceEEEEEeccchhhHHHHHHHHHhcc
Q psy5584 1798 Q-----------GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDW-YKFEVAVMVGGGIGVTPYASILNDLVFGT 1865 (2014)
Q Consensus 1798 ~-----------G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~-~~~~~vvlIaGGiGITP~lsiL~~l~~~~ 1865 (2014)
. |-.|..|.+ ++.+ ..|.|.||+|.+.... ....++|||||||||||++|+|++++...
T Consensus 171 ~~y~~~~g~~~~G~~S~~L~~-Lk~G--------d~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~ 241 (367)
T PLN03115 171 LVYTNDQGEIVKGVCSNFLCD-LKPG--------AEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEK 241 (367)
T ss_pred EEeecCCCccCCeehHhhHhh-CCCc--------CEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhc
Confidence 4 677888876 4443 4899999999875322 33468999999999999999999876542
Q ss_pred CCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccc
Q psy5584 1866 STNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMF 1945 (2014)
Q Consensus 1866 ~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~ 1945 (2014)
... .....+++|+|++|+.+++. |.++|+++++.. ..+++++..+|+....+.
T Consensus 242 ~~~---~~~~~~v~Lf~G~R~~~dll-y~dELe~l~~~~-p~~f~v~~a~SR~~~~~~---------------------- 294 (367)
T PLN03115 242 HDD---YKFNGLAWLFLGVPTSSSLL-YKEEFEKMKEKA-PENFRLDFAVSREQTNAK---------------------- 294 (367)
T ss_pred ccc---ccCCCcEEEEEccCCHHHhh-HHHHHHHHHHhC-CCCEEEEEEEcCCCcccC----------------------
Confidence 211 01135799999999998865 788898887643 346889988987543221
Q ss_pred cCcccccccCCCCHHHHHH----HHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcC
Q psy5584 1946 TGLKAVNHFGRPDMSSFLK----FVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKG 2000 (2014)
Q Consensus 1946 tgl~~~~~~GRPd~~~il~----~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~ 2000 (2014)
|.+ |+. .+.+. .+.+.... ....||+|||++|+++|.+++..+...
T Consensus 295 -G~k-----gyV--qd~i~e~~e~l~~~l~~-~~~~vYiCGp~~M~~~V~~~l~~l~~~ 344 (367)
T PLN03115 295 -GEK-----MYI--QTRMAEYAEELWELLKK-DNTYVYMCGLKGMEKGIDDIMVSLAAK 344 (367)
T ss_pred -Ccc-----eee--hhHHHHHHHHHHhhccc-CCeEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 111 111 11222 22221111 256799999999999999998876544
No 61
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.84 E-value=4.8e-20 Score=221.40 Aligned_cols=199 Identities=23% Similarity=0.270 Sum_probs=146.9
Q ss_pred eEEEEEEEcCCCEEEEEEecCC-CCcccCCCEEEEEecCCCCCcccccccCCCC-CCCeEEEEEEecCCccHHHHhhhcc
Q psy5584 1734 LDILETELLPSDVIKIRFYRPP-NFTYHSGQWVRLACTAFKNAAYHSFTLTSAP-HENFLSCHIKAQGPWTWKLRNYFDP 1811 (2014)
Q Consensus 1734 ~~v~~v~~l~~~v~~l~~~~p~-~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p-~~~~l~l~Ir~~G~~T~~L~~~~~~ 1811 (2014)
++|++++.++++++.++++.|. ...|+||||+.|+++.. .++|||||+|+| +++.++|+||..|..|..|.+ ++.
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~--~~~rpySias~~~~~~~i~l~vk~~G~~T~~L~~-l~~ 78 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEK--GERIPLTIADYDREKGTITIVFQAVGKSTRKLAE-LKE 78 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCC--CCceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhc-CCC
Confidence 4578889999999999998775 35799999999998743 457999999976 457899999999999999874 333
Q ss_pred CCCCCCCCCcEE-EEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccH
Q psy5584 1812 CNFNASEDQPKI-RLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHF 1890 (2014)
Q Consensus 1812 ~~~~~~~~~~~v-~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l 1890 (2014)
+ ..+ .|.||||.+... ..++++|||||||||||++++++++... + .+|+++|++|+.+++
T Consensus 79 G--------d~v~~i~GP~G~~~~~-~~~~~~llIaGGiGiaPl~~l~~~l~~~---~-------~~v~l~~g~r~~~d~ 139 (281)
T PRK06222 79 G--------DSILDVVGPLGKPSEI-EKFGTVVCVGGGVGIAPVYPIAKALKEA---G-------NKVITIIGARNKDLL 139 (281)
T ss_pred C--------CEEeeEEcCCCCCccc-CCCCeEEEEeCcCcHHHHHHHHHHHHHC---C-------CeEEEEEecCCHHHh
Confidence 3 378 699999997643 3467999999999999999999998753 1 379999999999988
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhC
Q psy5584 1891 EWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKH 1970 (2014)
Q Consensus 1891 ~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~ 1970 (2014)
. +.++|.++... ++++..+. +.|.+ |+.+ +++..+....
T Consensus 140 ~-~~~el~~~~~~---------~~v~~~d~------------------------~~g~~-----G~v~--~~l~~~~~~~ 178 (281)
T PRK06222 140 I-LEDEMKAVSDE---------LYVTTDDG------------------------SYGRK-----GFVT--DVLKELLESG 178 (281)
T ss_pred h-cHHHHHhhCCe---------EEEEcCCC------------------------CcCcc-----cchH--HHHHHHhhcC
Confidence 6 56777665431 12222110 01111 3322 3344333222
Q ss_pred CCCCeEEEEEeCChhhHHHHHHHHHhh
Q psy5584 1971 SYVSKIGVFSCGPRPLTKSIMSACEEV 1997 (2014)
Q Consensus 1971 ~~~~~v~V~vCGP~~m~~~vr~a~~~~ 1997 (2014)
.. ...||+|||++|++++.+.+.+.
T Consensus 179 ~~--~~~vy~CGP~~M~~~v~~~l~~~ 203 (281)
T PRK06222 179 KK--VDRVVAIGPVIMMKFVAELTKPY 203 (281)
T ss_pred CC--CcEEEEECCHHHHHHHHHHHHhc
Confidence 11 23599999999999999999877
No 62
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.84 E-value=1.6e-19 Score=212.85 Aligned_cols=196 Identities=11% Similarity=0.120 Sum_probs=142.9
Q ss_pred CEEEEEEecC-CCCcccCCCEEEEEecCCCCCcccccccCCCCCCCeEEEEEEecC-------CccHHHHhhhccCCCCC
Q psy5584 1745 DVIKIRFYRP-PNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKAQG-------PWTWKLRNYFDPCNFNA 1816 (2014)
Q Consensus 1745 ~v~~l~~~~p-~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~~~l~l~Ir~~G-------~~T~~L~~~~~~~~~~~ 1816 (2014)
++.+|+++.+ ..+.|+||||+.|.++. ...+|||||+|+|.++.++|+||..+ ..|..|.+.++.+
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~~~G---- 90 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPADGALELLVRQVRHADGGLGLGSGWLTRHAPIG---- 90 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCCCCEEEEEEEEeccCCCCCeeechhhhhCCCCC----
Confidence 6999999987 67899999999999763 45779999999998889999999874 4888888765544
Q ss_pred CCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcc-cHHHHHH
Q psy5584 1817 SEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHK-HFEWFID 1895 (2014)
Q Consensus 1817 ~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~-~l~w~~~ 1895 (2014)
.+|.|.||.|..........++|||||||||||++|+++++.... .+++++++++|+.+ ++. |.+
T Consensus 91 ----d~v~i~gp~gg~F~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~---------~~~~~l~~g~r~~~~d~~-~~~ 156 (245)
T cd06200 91 ----ASVALRLRENPGFHLPDDGRPLILIGNGTGLAGLRSHLRARARAG---------RHRNWLLFGERQAAHDFF-CRE 156 (245)
T ss_pred ----CEEEEEecCCCcccCCCCCCCEEEEecCcChHHHHHHHHHHHhcc---------CCCeEEEEecCCccccHh-HHH
Confidence 389999987643322234578999999999999999999987542 13689999999984 665 789
Q ss_pred HHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHH----HHHHHhCC
Q psy5584 1896 VLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFL----KFVQKKHS 1971 (2014)
Q Consensus 1896 ~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il----~~l~~~~~ 1971 (2014)
+|.++++.. ...++++.+|+.... . | .+...+ ..+.+...
T Consensus 157 el~~~~~~~--~~~~~~~~~s~~~~~----~----------------------------~--~v~~~l~~~~~~~~~~~~ 200 (245)
T cd06200 157 ELEAWQAAG--HLARLDLAFSRDQAQ----K----------------------------R--YVQDRLRAAADELRAWVA 200 (245)
T ss_pred HHHHHHHCC--CcceEEEEEccCCCC----C----------------------------c--chHHHHHHhHHHHHHHHH
Confidence 999887653 456667777763210 0 0 001111 11111111
Q ss_pred CCCeEEEEEeCCh-hhHHHHHHHHHhhh
Q psy5584 1972 YVSKIGVFSCGPR-PLTKSIMSACEEVN 1998 (2014)
Q Consensus 1972 ~~~~v~V~vCGP~-~m~~~vr~a~~~~~ 1998 (2014)
. ...||+|||+ +|+++|++.+.+.-
T Consensus 201 ~--~~~vy~CGp~~~m~~~v~~~l~~~~ 226 (245)
T cd06200 201 E--GAAIYVCGSLQGMAPGVDAVLDEIL 226 (245)
T ss_pred C--CcEEEEECCchhhhHHHHHHHHHHH
Confidence 1 3469999999 99999999887654
No 63
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.84 E-value=1.1e-19 Score=216.39 Aligned_cols=207 Identities=12% Similarity=0.232 Sum_probs=149.9
Q ss_pred CCCEEEEEEecC--CCCcccCCCEEEEEecCCCCCcccccccCCCCCC--CeEEEEEEec-----------CCccHHHHh
Q psy5584 1743 PSDVIKIRFYRP--PNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE--NFLSCHIKAQ-----------GPWTWKLRN 1807 (2014)
Q Consensus 1743 ~~~v~~l~~~~p--~~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~--~~l~l~Ir~~-----------G~~T~~L~~ 1807 (2014)
+.++++|+|+.| ..+.|+||||+.|.+|. ....|||||+|.|++ +.++|+||.. |..|..|.+
T Consensus 14 ~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~ 91 (267)
T cd06182 14 PRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91 (267)
T ss_pred CCceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh
Confidence 458999999998 67889999999999874 456899999999965 7899999987 778888875
Q ss_pred hhccCCCCCCCCCcEEEEECCCC-CCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCC
Q psy5584 1808 YFDPCNFNASEDQPKIRLEGPFG-GGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPS 1886 (2014)
Q Consensus 1808 ~~~~~~~~~~~~~~~v~IdGPyG-~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~ 1886 (2014)
++.+ ..+.|.||+| .+..+....+++|||||||||||++|++++++..... .....+|+|+|++|+
T Consensus 92 -lk~G--------d~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~----~~~~~~v~l~~g~r~ 158 (267)
T cd06182 92 -LQLG--------AKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRAN----GKARGPAWLFFGCRN 158 (267)
T ss_pred -CCCC--------CEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhc----cccCCCEEEEEeCCC
Confidence 3333 3899999999 7765434467999999999999999999999863210 112358999999999
Q ss_pred c-ccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHH
Q psy5584 1887 H-KHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKF 1965 (2014)
Q Consensus 1887 ~-~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~ 1965 (2014)
. +++. +.++|.++.+. ...++++..+|+.... ... ++ + ++ +......
T Consensus 159 ~~~d~~-~~del~~~~~~--~~~~~~~~~~S~~~~~---~~~--~v---------------------~-~~--l~~~~~~ 206 (267)
T cd06182 159 FASDYL-YREELQEALKD--GALTRLDVAFSREQAE---PKV--YV---------------------Q-DK--LKEHAEE 206 (267)
T ss_pred Cccccc-HHHHHHHHHhC--CCcceEEEEEccCCCC---Cce--eh---------------------H-HH--HHHhHHH
Confidence 9 7776 78899988774 3567888878764211 000 00 0 00 0000111
Q ss_pred HHHhCCCCCeEEEEEeCChh-hHHHHHHHHHhhh
Q psy5584 1966 VQKKHSYVSKIGVFSCGPRP-LTKSIMSACEEVN 1998 (2014)
Q Consensus 1966 l~~~~~~~~~v~V~vCGP~~-m~~~vr~a~~~~~ 1998 (2014)
+.+.... ...||+|||++ |++++.+++.++.
T Consensus 207 l~~~l~~--~~~vyvCGp~~~m~~~v~~~L~~~~ 238 (267)
T cd06182 207 LRRLLNE--GAHIYVCGDAKSMAKDVEDALVKII 238 (267)
T ss_pred HHHHHhc--CCEEEEECCcccchHHHHHHHHHHH
Confidence 1111111 22699999999 9999999999884
No 64
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.84 E-value=1.6e-19 Score=226.56 Aligned_cols=220 Identities=15% Similarity=0.210 Sum_probs=153.3
Q ss_pred eeEeEEEEEEEcC-----CCEEEEEEecCC-CCcccCCCEEEEEecCCC----CCcccccccCCCCCC-----CeEEEEE
Q psy5584 1731 YMALDILETELLP-----SDVIKIRFYRPP-NFTYHSGQWVRLACTAFK----NAAYHSFTLTSAPHE-----NFLSCHI 1795 (2014)
Q Consensus 1731 ~~~~~v~~v~~l~-----~~v~~l~~~~p~-~~~~~pGQyv~L~~p~~~----~~e~HPFTIaS~p~~-----~~l~l~I 1795 (2014)
...++|+..+.++ +++.+|++..+. .+.|+|||||.|.+|... ...+|||||+|+|.+ +.++|+|
T Consensus 142 ~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~V 221 (411)
T TIGR03224 142 PITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTV 221 (411)
T ss_pred CeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEE
Confidence 4568889999884 599999999875 688999999999988532 245799999998742 4799999
Q ss_pred Eec----------CCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCC-cCCCceEEEEEeccchhhHHHHHHHHHhc
Q psy5584 1796 KAQ----------GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQD-WYKFEVAVMVGGGIGVTPYASILNDLVFG 1864 (2014)
Q Consensus 1796 r~~----------G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~-~~~~~~vvlIaGGiGITP~lsiL~~l~~~ 1864 (2014)
|.. |-.|..|.+ ++.+ .+|.|.||||.++.. .....++|||||||||||++|+++++...
T Consensus 222 k~v~~~~~g~~~~G~~S~~L~~-lk~G--------d~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~ 292 (411)
T TIGR03224 222 KRVTTDHQGNAVRGVASNYLCD-LKKG--------DKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRR 292 (411)
T ss_pred EEEEecCCCCcCcccchhHHhc-CCCc--------CEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHH
Confidence 986 778888877 4443 489999999985532 22346899999999999999999998764
Q ss_pred cCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhccccccccccc
Q psy5584 1865 TSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSM 1944 (2014)
Q Consensus 1865 ~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~ 1944 (2014)
...+ ...+|+|+|++|+.+++. +.++|+++.+. .+++++.+++..+. ....+ +
T Consensus 293 ~~~~-----~~~~v~L~~G~Rt~~dl~-y~~eL~~l~~~----~~~~~~~~sr~~~~---~~g~V-------~------- 345 (411)
T TIGR03224 293 RDHG-----EGGKLMLFFGARTKEELP-YFGPLQKLPKD----FIDINFAFSRTPEQ---PKRYV-------Q------- 345 (411)
T ss_pred hhcC-----CCCCEEEEEecCccccch-HHHHHHHHHhc----CceEEEEeccCCcc---CcccH-------h-------
Confidence 2111 235899999999999987 55778877643 34566655653211 00000 0
Q ss_pred ccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhc
Q psy5584 1945 FTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNK 1999 (2014)
Q Consensus 1945 ~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~ 1999 (2014)
..-|-....+ ..+.. . .+..||+|||++|++++.+++.+...
T Consensus 346 --------d~l~~~~~~v-~~ll~--~--~~~~vYiCGp~~M~~~v~~~L~~~~~ 387 (411)
T TIGR03224 346 --------DAIRERAADV-AALLK--D--PNTYIYICGLKGMEEGVLDAFRDVCA 387 (411)
T ss_pred --------hHHHHhHHHH-HHHHh--c--CCcEEEEECCHHHHHHHHHHHHHHHH
Confidence 0000000111 11111 1 13569999999999999998888754
No 65
>PLN02283 alpha-dioxygenase
Probab=99.83 E-value=4.5e-21 Score=246.10 Aligned_cols=208 Identities=15% Similarity=0.095 Sum_probs=147.8
Q ss_pred HHHHHHHhCCcc--CCccc---ccccCcccccccccCHHHHHhhhCCCCChHHHHHHHHhhccCCC----------Cccc
Q psy5584 24 REAYALTFGLKP--GEKRR---RDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGD----------GRIS 88 (2014)
Q Consensus 24 ~~~~~~~~~l~~--~~~~~---~~~y~~~v~ps~~i~~~EF~~al~~rf~~s~~~~~f~~fD~d~~----------g~I~ 88 (2014)
++.+++.+|+.. ...|| ...++..++++++ +||.+ ++|| |++++..+.+.|.+.+ ..++
T Consensus 339 g~~~~~~~g~~~~~~~~g~~gy~~~~~~~v~~~is---~EF~a--aYR~-Hslip~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (633)
T PLN02283 339 GKKFKDTFGHIGGPILSGLVGLKKPNNHGVPYSLT---EEFTS--VYRM-HSLLPDHLILRDITAAPGENKSPPLIEEIP 412 (633)
T ss_pred chhhhhhcccccccccccccCCCccccCCCCcchh---HHHHH--HHhh-hhcCCCceeccccccccccccccccccccc
Confidence 444445555431 22333 2234557888899 99954 5998 9999999988886543 2478
Q ss_pred HHHHHhhhh--hccCCCHHHHHHHH----HhhccCCCCccccHHHHHH--------HHHHH--HHhhcC---CCCC----
Q psy5584 89 FQEFLDTVV--LFSRGHTEDKLRII----FDMCDNDRNGVIDKGELAE--------MLRSL--VEMART---SFPS---- 145 (2014)
Q Consensus 89 f~Efi~~~~--~l~~~~~~d~l~~~----f~~~D~d~~G~Is~~El~~--------~L~dL--~niqrg---glp~---- 145 (2014)
+.|++.... .+...+..+.+... ...+|..+.-...++-+.+ ...|| +||||| |+|+
T Consensus 413 l~d~~~~~~~~~l~~~Gl~~ll~~l~~q~aga~~l~n~p~~l~~l~~~~~~g~~~~~g~DLaal~IqRgRDhGlp~YNef 492 (633)
T PLN02283 413 MPELIGLKGEKKLSKIGFEKLMVSMGHQACGALELWNYPSWMRDLVPQDIDGEDRPDHVDMAALEIYRDRERGVARYNEF 492 (633)
T ss_pred HHHHHhhcccccccccCHHHHHHHHhhcchhccccccCcHHHHhhhhccccCCcccccccHHHHHHHhhhhcCCccHHHH
Confidence 888875332 33344444443333 2233332221111110000 12466 999999 9999
Q ss_pred ----C-CCchh-----HHHHHHHhhhhcCC-CCcchhhhhhccccccCC---CCchhhhHHHHHHHHhhcccccccccCC
Q psy5584 146 ----G-GAATT-----VVKIVLRGYYSYGN-SLDNIDLYIGGMLESHEG---PGPLFTNIILEQFTRLRDADRFWFENTE 211 (2014)
Q Consensus 146 ----~-~~a~~-----i~~~~l~~~~~~~~-~~~~idl~~gg~~E~~~~---~gp~~~~i~~~qf~r~r~gdrf~~e~~~ 211 (2014)
| +++++ =+++++++|++.|+ +||||||||||++|++++ +||||.||+..||.|+++||||||||.+
T Consensus 493 R~~~gL~~~~sFedlt~d~e~~~~L~~lY~~~vddVDL~VG~laE~~v~G~~vG~T~~~i~~~~a~r~~~gDRF~~en~n 572 (633)
T PLN02283 493 RRNLLMIPISKWEDLTDDEEAIEVLREVYGDDVEKLDLLVGLMAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNFN 572 (633)
T ss_pred HHHcCCCCCCCHHHcCCCHHHHHHHHHHhCCCHHHHHhhhhheecccCCCCCcCHHHHHHHHHHHHHHhcCCCCeEecCC
Confidence 4 55555 34788899999997 899999999999999853 9999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHhc-cchhhhhccCc
Q psy5584 212 NGMFTAAEVEAIRKI-TLWDIIVNATD 237 (2014)
Q Consensus 212 ~~~ft~~ql~~i~~~-~l~~i~c~~~~ 237 (2014)
|+.||++|+++|+++ ||++|||+|..
T Consensus 573 p~~fT~~gl~~I~~t~tl~dvl~r~~p 599 (633)
T PLN02283 573 EKTYTKKGLEWVNTTESLKDVIDRHYP 599 (633)
T ss_pred cCcCCHHHHHHHHccCcHHHHHHHhCc
Confidence 999999999999997 99999999975
No 66
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.83 E-value=2.2e-20 Score=205.25 Aligned_cols=153 Identities=24% Similarity=0.465 Sum_probs=95.1
Q ss_pred CceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCC
Q psy5584 1839 FEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQF 1918 (2014)
Q Consensus 1839 ~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~ 1918 (2014)
|+++||||||+||||++|++++|+.....+ ....++|+|+|++|+.++++||.++|.++........+++++|+|+.
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~---~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~ 77 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRG---SSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRE 77 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT--------EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT-
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccc---cccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCC
Confidence 789999999999999999999999886532 45678999999999999999999999888765433689999999998
Q ss_pred CCCCCcchhhhhhh-hccccc-ccccccccCcc-cccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHH
Q psy5584 1919 FHKFDLRTTMLYIC-ENHFQR-LSKSSMFTGLK-AVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACE 1995 (2014)
Q Consensus 1919 ~~~~d~~~~~~~~~-e~~~~~-~~~~~~~tgl~-~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~ 1995 (2014)
....+......... ....+. .++.+..+..+ ..+++|||++++++......... .+++|++|||++|+++++++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~-~~~~V~~CGP~~m~~~vr~~v~ 156 (156)
T PF08030_consen 78 SSAPSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSS-GRVAVFVCGPPSMVDDVRNAVN 156 (156)
T ss_dssp ------------------------------------EEES---HHHHHHHHHHHSTT--EEEEEEES-HHHHHHHHHHH-
T ss_pred cccccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCC-CcEEEEEcCcHHHHHHHHHHhC
Confidence 66543322211110 000000 11223334443 67889999999999998544443 6999999999999999999884
No 67
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.83 E-value=4.7e-19 Score=208.74 Aligned_cols=204 Identities=25% Similarity=0.404 Sum_probs=153.9
Q ss_pred EeEEEEEEEcCCCEEEEEEecCCC-CcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEe--cCCccHHHHhh
Q psy5584 1733 ALDILETELLPSDVIKIRFYRPPN-FTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKA--QGPWTWKLRNY 1808 (2014)
Q Consensus 1733 ~~~v~~v~~l~~~v~~l~~~~p~~-~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~--~G~~T~~L~~~ 1808 (2014)
.++|.+++.+++++..++++.|.. +.++|||||.|+.|. ...+|||++|+|.+ +.+.|+|+. .|..|+.+.++
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHHhhc
Confidence 378999999999999999998755 689999999999988 68899999999974 556666655 79999999877
Q ss_pred hccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcc
Q psy5584 1809 FDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHK 1888 (2014)
Q Consensus 1809 ~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~ 1888 (2014)
+.+ ..+.|.||||.+.......+++++||||||++|++++++++.... ...+|+++|+.|+.+
T Consensus 86 -k~g--------d~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~--------~~~~V~~~~G~~~~~ 148 (252)
T COG0543 86 -KEG--------DKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG--------DANKVTLLYGARTAK 148 (252)
T ss_pred -cCC--------CEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC--------CCceEEEEEeccChh
Confidence 322 279999999999865434455999999999999999999998753 225999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHH
Q psy5584 1889 HFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQK 1968 (2014)
Q Consensus 1889 ~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~ 1968 (2014)
++. +.++|.++.+. ++++.+. . . +.|.+ |... .+++..+..
T Consensus 149 dl~-~~~el~~~~~~------~~~~~~~-~--~-----------------------~~G~~-----G~v~-~~~~~~~~~ 189 (252)
T COG0543 149 DLL-LLDELEELAEK------EVHPVTD-D--G-----------------------WKGRK-----GFVT-TDVLKELLD 189 (252)
T ss_pred hcc-cHHHHHHhhcC------cEEEEEC-C--C-----------------------CCccC-----ccee-HHHHhhhcc
Confidence 987 56777777643 3444333 1 1 11111 2221 222333222
Q ss_pred hCCCCCeEEEEEeCChhhHHHHHHHHHhhhc
Q psy5584 1969 KHSYVSKIGVFSCGPRPLTKSIMSACEEVNK 1999 (2014)
Q Consensus 1969 ~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~ 1999 (2014)
. +...||+||||.|++++++.+.+.+.
T Consensus 190 ~----~~~~v~~cGp~~M~~~v~~~~~~~g~ 216 (252)
T COG0543 190 L----EVDDVYICGPPAMVKAVREKLKEYGV 216 (252)
T ss_pred c----cCCEEEEECCHHHHHHHHHHHHhcCC
Confidence 2 24569999999999999999999864
No 68
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.82 E-value=6.6e-19 Score=212.26 Aligned_cols=212 Identities=15% Similarity=0.261 Sum_probs=152.1
Q ss_pred eeeEeEEEEEEEcC----CCEEEEEEecCC-------CCcccCCCEEEEEecCCCCCcccccccCCCCCCCeEEEEEEe-
Q psy5584 1730 KYMALDILETELLP----SDVIKIRFYRPP-------NFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKA- 1797 (2014)
Q Consensus 1730 ~~~~~~v~~v~~l~----~~v~~l~~~~p~-------~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~~~l~l~Ir~- 1797 (2014)
....+++++.+.++ +++..++|+.|. ...|+|||||.|..+. ....|||||+|+|.++.+.|+||.
T Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g--~~~~R~YSias~p~~g~l~l~Vk~~ 121 (289)
T cd06201 44 RTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPG--SDVPRFYSLASSSSDGFLEICVRKH 121 (289)
T ss_pred CccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCC--CCCCceEecCCCCCCCeEEEEEEeC
Confidence 35668888888887 599999999876 4679999999998653 345799999999988899999997
Q ss_pred -cCCccHHHHhhhccCCCCCCCCCcEEEEE-CCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCc
Q psy5584 1798 -QGPWTWKLRNYFDPCNFNASEDQPKIRLE-GPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSC 1875 (2014)
Q Consensus 1798 -~G~~T~~L~~~~~~~~~~~~~~~~~v~Id-GPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~ 1875 (2014)
.|..|..|.+ +..+ ..+.+. +|+|.+... ...+++|||||||||||++|++++... .
T Consensus 122 ~~G~~S~~L~~-l~~G--------d~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~~-----------~ 180 (289)
T cd06201 122 PGGLCSGYLHG-LKPG--------DTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANAA-----------R 180 (289)
T ss_pred CCccchhhHhh-CCCc--------CEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhhc-----------c
Confidence 5889999885 4443 377776 578887653 445789999999999999999987521 1
Q ss_pred cEEEEEEEeCCcc-cHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCccccccc
Q psy5584 1876 KKVYFLWICPSHK-HFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHF 1954 (2014)
Q Consensus 1876 ~kV~liW~~R~~~-~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~ 1954 (2014)
++|+|+|++|+.+ ++ .|.++|+++.+.. ..+.++..+++...+ ..+ ...
T Consensus 181 ~~v~L~~g~r~~~~d~-~~~~eL~~l~~~~--~~~~~~~~~s~~~~~-----g~v----------------------~~~ 230 (289)
T cd06201 181 RPMHLYWGGRDPASDF-LYEDELDQYLADG--RLTQLHTAFSRTPDG-----AYV----------------------QDR 230 (289)
T ss_pred CCEEEEEEecCcccch-HHHHHHHHHHHcC--CCceEEEEECCCCCc-----ccc----------------------hhH
Confidence 4799999999985 54 4789999887653 345666666653110 000 000
Q ss_pred CCCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcC
Q psy5584 1955 GRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKG 2000 (2014)
Q Consensus 1955 GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~ 2000 (2014)
.|-+...+ .... .. ...||+|||++|++++.+.+.+.-..
T Consensus 231 l~~~~~~l-~~~~---~~--~~~vyiCGp~~M~~~v~~~L~~i~~~ 270 (289)
T cd06201 231 LRADAERL-RRLI---ED--GAQIMVCGSRAMAQGVAAVLEEILAP 270 (289)
T ss_pred HHHhHHHH-HHHH---HC--CcEEEEECCHHHHHHHHHHHHHHHHH
Confidence 11111111 1111 11 35699999999999999999886543
No 69
>KOG0534|consensus
Probab=99.82 E-value=8e-19 Score=203.52 Aligned_cols=221 Identities=18% Similarity=0.278 Sum_probs=179.5
Q ss_pred eeeEeEEEEEEEcCCCEEEEEEecCC---CCcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEec--CCccH
Q psy5584 1730 KYMALDILETELLPSDVIKIRFYRPP---NFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQ--GPWTW 1803 (2014)
Q Consensus 1730 ~~~~~~v~~v~~l~~~v~~l~~~~p~---~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~ 1803 (2014)
.+...++++.+.++.|+..++|..|. .+....||||++.+|-.+..-.+|||-.|.+.+ +.+.|.||.. |..|+
T Consensus 50 ~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS~ 129 (286)
T KOG0534|consen 50 SYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMSQ 129 (286)
T ss_pred ceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEeccCCcccH
Confidence 46788899999999999999999884 567899999999999887888999999998876 7999999987 89999
Q ss_pred HHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEE
Q psy5584 1804 KLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWI 1883 (2014)
Q Consensus 1804 ~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~ 1883 (2014)
.|.++ ..+..|.+.||.|....+...++++.|||||+||||+++++++++..... ..+|+|+++
T Consensus 130 ~l~~L---------kiGd~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d-------~tki~lly~ 193 (286)
T KOG0534|consen 130 HLDSL---------KIGDTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPED-------TTKISLLYA 193 (286)
T ss_pred HHhcC---------CCCCEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCC-------CcEEEEEEe
Confidence 88765 34459999999999875555689999999999999999999999876432 468999999
Q ss_pred eCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHH
Q psy5584 1884 CPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFL 1963 (2014)
Q Consensus 1884 ~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il 1963 (2014)
+++.+++. ++++|++++..... .+.++.++++..+.+ ++.. |+++-+.+-
T Consensus 194 N~te~DIL-lr~eL~~la~~~p~-rf~~~y~v~~~~~~w-----------------------~~~~-----g~It~~~i~ 243 (286)
T KOG0534|consen 194 NKTEDDIL-LREELEELASKYPE-RFKVWYVVDQPPEIW-----------------------DGSV-----GFITKDLIK 243 (286)
T ss_pred cCCccccc-hHHHHHHHHhhCcc-eEEEEEEEcCCcccc-----------------------cCcc-----CccCHHHHH
Confidence 99999985 89999999887633 888998888864332 3322 788866665
Q ss_pred HHHHHhCCCCCeEEEEEeCChhhHHH-HHHHHHhhh
Q psy5584 1964 KFVQKKHSYVSKIGVFSCGPRPLTKS-IMSACEEVN 1998 (2014)
Q Consensus 1964 ~~l~~~~~~~~~v~V~vCGP~~m~~~-vr~a~~~~~ 1998 (2014)
..+....++ .+.|++||||+|++. +..++.+++
T Consensus 244 ~~l~~~~~~--~~~~liCGPp~m~~~~~~~~le~Lg 277 (286)
T KOG0534|consen 244 EHLPPPKEG--ETLVLICGPPPMINGAAQGNLEKLG 277 (286)
T ss_pred hhCCCCCCC--CeEEEEECCHHHHhHHHHHHHHhcC
Confidence 555544443 688999999999985 555666564
No 70
>PLN02252 nitrate reductase [NADPH]
Probab=99.82 E-value=4e-19 Score=238.27 Aligned_cols=220 Identities=18% Similarity=0.247 Sum_probs=164.6
Q ss_pred eeeEeEEEEEEEcCCCEEEEEEecCCC---CcccCCCEEEEEecCCCCCcccccccCCCCC-CCeEEEEEEec-------
Q psy5584 1730 KYMALDILETELLPSDVIKIRFYRPPN---FTYHSGQWVRLACTAFKNAAYHSFTLTSAPH-ENFLSCHIKAQ------- 1798 (2014)
Q Consensus 1730 ~~~~~~v~~v~~l~~~v~~l~~~~p~~---~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~-~~~l~l~Ir~~------- 1798 (2014)
.+..++|++++.+++++..++|+.|.. +.++|||||+|.++..+....||||++|.+. ++.++|+||..
T Consensus 633 ~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~~~~ 712 (888)
T PLN02252 633 EKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVHPK 712 (888)
T ss_pred ceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEeccccCc
Confidence 356788999999999999999998753 5799999999998754555689999999986 47899999986
Q ss_pred ----CCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCC----------cCCCceEEEEEeccchhhHHHHHHHHHhc
Q psy5584 1799 ----GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQD----------WYKFEVAVMVGGGIGVTPYASILNDLVFG 1864 (2014)
Q Consensus 1799 ----G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~----------~~~~~~vvlIaGGiGITP~lsiL~~l~~~ 1864 (2014)
|..|..|.+ ++. +..|.|.||+|.+... ....+++|||||||||||++++|++++..
T Consensus 713 ~p~gG~~S~~L~~-L~v--------Gd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~ 783 (888)
T PLN02252 713 FPNGGLMSQYLDS-LPI--------GDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRD 783 (888)
T ss_pred cCCCCchhhHHhc-CCC--------CCEEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhc
Confidence 778888854 333 3389999999985311 12357899999999999999999999865
Q ss_pred cCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhccccccccccc
Q psy5584 1865 TSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSM 1944 (2014)
Q Consensus 1865 ~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~ 1944 (2014)
... .++|+|+|++|+.+++. +.++|.++++.. .+.++++..+|+... +.
T Consensus 784 ~~d-------~t~i~Liyg~Rt~~Dil-~~eEL~~la~~~-p~~~~v~~vls~~~~----------------------~~ 832 (888)
T PLN02252 784 PED-------KTEMSLVYANRTEDDIL-LREELDRWAAEH-PDRLKVWYVVSQVKR----------------------EG 832 (888)
T ss_pred cCC-------CCcEEEEEEECCHHHhh-HHHHHHHHHHhC-CCCEEEEEEecCCCc----------------------CC
Confidence 322 25899999999999987 789999987653 346888777776320 01
Q ss_pred ccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHH-HHHHHHhh
Q psy5584 1945 FTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKS-IMSACEEV 1997 (2014)
Q Consensus 1945 ~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~-vr~a~~~~ 1997 (2014)
+.|. .||.+- .+++....... ....||+|||++|++. ++..+.+.
T Consensus 833 w~g~-----~GrV~~-~ll~~~l~~~~--~~~~vyiCGPp~Mi~~av~~~L~~~ 878 (888)
T PLN02252 833 WKYS-----VGRVTE-AMLREHLPEGG--DETLALMCGPPPMIEFACQPNLEKM 878 (888)
T ss_pred CCCc-----CCcCCH-HHHHHhcccCC--CCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 2222 277763 23333332211 3567999999999994 78888877
No 71
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.78 E-value=7.6e-18 Score=197.70 Aligned_cols=207 Identities=14% Similarity=0.115 Sum_probs=149.0
Q ss_pred EEEEEEcCCCEEEEEEecCCC---CcccCCCEEEEEecCCC-------------------CCcccccccCCCC-CCCeEE
Q psy5584 1736 ILETELLPSDVIKIRFYRPPN---FTYHSGQWVRLACTAFK-------------------NAAYHSFTLTSAP-HENFLS 1792 (2014)
Q Consensus 1736 v~~v~~l~~~v~~l~~~~p~~---~~~~pGQyv~L~~p~~~-------------------~~e~HPFTIaS~p-~~~~l~ 1792 (2014)
|++++.+++++++|+|+.|.. ..|+|||||.|.+|..+ ....|+|||++.+ ++++++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence 457888999999999998764 67999999999998643 4668999999986 568899
Q ss_pred EEEEec---CCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCC
Q psy5584 1793 CHIKAQ---GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNR 1869 (2014)
Q Consensus 1793 l~Ir~~---G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~ 1869 (2014)
|.|+.. |..|..|.+ ++. +..+.|.||+|.+... ...+++||||||+||||+++|++++...
T Consensus 81 ~~v~~~~~~G~~s~~l~~-l~~--------Gd~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~~~il~~~~~~----- 145 (235)
T cd06193 81 IDFVLHGDEGPASRWAAS-AQP--------GDTLGIAGPGGSFLPP-PDADWYLLAGDETALPAIAAILEELPAD----- 145 (235)
T ss_pred EEEEeCCCCCchHHHHhh-CCC--------CCEEEEECCCCCCCCC-CCcceEEEEeccchHHHHHHHHHhCCCC-----
Confidence 999876 557777753 343 3499999999998764 3567899999999999999999987432
Q ss_pred CCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcc
Q psy5584 1870 YSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLK 1949 (2014)
Q Consensus 1870 ~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~ 1949 (2014)
.++++++++|+.+++. .+.+ ...++++...+.....
T Consensus 146 ------~~~~~~~~~~~~~d~~-------~l~~---~~~~~~~~~~~~~~~~---------------------------- 181 (235)
T cd06193 146 ------ARGTALIEVPDAADEQ-------PLPA---PAGVEVTWLHRGGAEA---------------------------- 181 (235)
T ss_pred ------CeEEEEEEECCHHHcc-------ccCC---CCCcEEEEEeCCCCCc----------------------------
Confidence 4899999999985542 2221 1245666554432110
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEEEecC
Q psy5584 1950 AVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013 (2014)
Q Consensus 1950 ~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h~E~F 2013 (2014)
|+.... ++. ..........||+|||++|++.+++.+++.. |++.-++|.|.|
T Consensus 182 -----~~~~~~-~~~---~~~~~~~~~~vyicGp~~mv~~v~~~l~~~~---g~~~~~i~~~~y 233 (235)
T cd06193 182 -----GELALL-AVR---ALAPPAGDGYVWIAGEAGAVRALRRHLREER---GVPRAQVYASGY 233 (235)
T ss_pred -----chhHHH-HHh---cccCCCCCeEEEEEccHHHHHHHHHHHHHcc---CCCHHHEEEEEe
Confidence 000000 011 1111123567999999999999999997642 667788998876
No 72
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.75 E-value=4e-17 Score=222.57 Aligned_cols=211 Identities=14% Similarity=0.194 Sum_probs=148.8
Q ss_pred eeEeEEEEEEEcCCCEEEEEEecCCC-CcccCCCEEEEEecCCCCCcccccccCCCCC-CCeEEEEEEecCCccHHHHhh
Q psy5584 1731 YMALDILETELLPSDVIKIRFYRPPN-FTYHSGQWVRLACTAFKNAAYHSFTLTSAPH-ENFLSCHIKAQGPWTWKLRNY 1808 (2014)
Q Consensus 1731 ~~~~~v~~v~~l~~~v~~l~~~~p~~-~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~L~~~ 1808 (2014)
...++|++++.++++++.++|+.|.. ..++||||+.|.++.. .++|||||+|.|. ++.++|+||..|..|..|.+
T Consensus 648 ~~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~--ge~rP~SIas~~~~~g~i~l~Vk~vG~~T~~L~~- 724 (944)
T PRK12779 648 QIPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEK--GELIPLTLADWDAEKGTIDLVVQGMGTSSLEINR- 724 (944)
T ss_pred ceEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCC--CCEEeEEccCCCCCCCEEEEEEEeeccHHHHHhc-
Confidence 45688999999999999999988753 4799999999997633 3579999999874 67899999999988876654
Q ss_pred hccCCCCCCCCCcEEE-EECCCCCCCCCc--CCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeC
Q psy5584 1809 FDPCNFNASEDQPKIR-LEGPFGGGNQDW--YKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICP 1885 (2014)
Q Consensus 1809 ~~~~~~~~~~~~~~v~-IdGPyG~~~~~~--~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R 1885 (2014)
++. +..+. |.||+|.+.... ...+++|||||||||||++++++.+.... .+|+|+|++|
T Consensus 725 lk~--------Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g----------~~V~li~G~R 786 (944)
T PRK12779 725 MAI--------GDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG----------NHVTLISGFR 786 (944)
T ss_pred CCC--------cCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC----------CCEEEEEEeC
Confidence 333 33785 999999985321 12368999999999999999999987541 3799999999
Q ss_pred CcccHHHHHHH---HHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHH
Q psy5584 1886 SHKHFEWFIDV---LRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSF 1962 (2014)
Q Consensus 1886 ~~~~l~w~~~~---L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~i 1962 (2014)
+.+++.+. ++ |.++++.. ...+++ +++..... .|. .|+.+ +.
T Consensus 787 s~edl~~~-del~~L~~la~~~-~~~~~v--~~ttddgs------------------------~G~-----~G~Vt--~~ 831 (944)
T PRK12779 787 AKEFLFWT-GDDERVGKLKAEF-GDQLDV--IYTTNDGS------------------------FGV-----KGFVT--GP 831 (944)
T ss_pred CHHHhhhH-HHHHHHHHHHHHc-CCCeEE--EEEecCCC------------------------CCC-----ccccC--hH
Confidence 99887643 44 44454432 223333 33332110 111 14444 22
Q ss_pred HHHHHHhCCCC---CeEEEEEeCChhhHHHHHHHHHhh
Q psy5584 1963 LKFVQKKHSYV---SKIGVFSCGPRPLTKSIMSACEEV 1997 (2014)
Q Consensus 1963 l~~l~~~~~~~---~~v~V~vCGP~~m~~~vr~a~~~~ 1997 (2014)
+..+....... ....||+|||++|++.+.+.+.+.
T Consensus 832 l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~~~l~~~ 869 (944)
T PRK12779 832 LEEMLKANQQGKGRTIAEVIAIGPPLMMRAVSDLTKPY 869 (944)
T ss_pred HHHHHHhcccccccCCcEEEEECCHHHHHHHHHHHHHc
Confidence 33333322100 124699999999999999999877
No 73
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.74 E-value=6.3e-17 Score=227.26 Aligned_cols=229 Identities=13% Similarity=0.196 Sum_probs=164.0
Q ss_pred eeeEeEEEEEE---EcCCCEEEEEEecCCC---CcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEec-CCc
Q psy5584 1730 KYMALDILETE---LLPSDVIKIRFYRPPN---FTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQ-GPW 1801 (2014)
Q Consensus 1730 ~~~~~~v~~v~---~l~~~v~~l~~~~p~~---~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~-G~~ 1801 (2014)
.+.+++|++++ ..+.++..++|..|.. +.|+|||||.|.++..+....++||++|.|.+ +.+.|+||.. |..
T Consensus 913 ~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr~~~G~~ 992 (1167)
T PTZ00306 913 KWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARGDKGTL 992 (1167)
T ss_pred ceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEEcCCChh
Confidence 35667788776 4578999999988753 47999999999986444445799999999964 6799999984 888
Q ss_pred cHHHHhhhccCCCCCCCCCcEEEEECCCCCC----------CCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCC
Q psy5584 1802 TWKLRNYFDPCNFNASEDQPKIRLEGPFGGG----------NQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYS 1871 (2014)
Q Consensus 1802 T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~----------~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~ 1871 (2014)
|..|.+ ++. +..|.|.||+|.. ..+....+++|||||||||||++|++++++.+...
T Consensus 993 S~~L~~-l~~--------Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~---- 1059 (1167)
T PTZ00306 993 KEWISA-LRP--------GDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYV---- 1059 (1167)
T ss_pred HHHHhh-CCC--------CCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCccc----
Confidence 998853 343 3489999998842 11123457899999999999999999998865210
Q ss_pred CcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccc
Q psy5584 1872 GVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAV 1951 (2014)
Q Consensus 1872 ~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~ 1951 (2014)
...++|+|+|++|+.+++. |.++|+++++.. ++++++++.++++.+. |++.
T Consensus 1060 -~~~~~i~Llyg~r~~~dl~-~~~eL~~l~~~~-~~~f~~~~~ls~~~~~-----------------------w~~~--- 1110 (1167)
T PTZ00306 1060 -DSIESIRLIYAAEDVSELT-YRELLESYRKEN-PGKFKCHFVLNNPPEG-----------------------WTDG--- 1110 (1167)
T ss_pred -CCCceEEEEEEeCCHHHhh-HHHHHHHHHHHC-CCCEEEEEEECCCCcc-----------------------cCCC---
Confidence 1235899999999999987 788999887643 3468888877763211 1121
Q ss_pred cccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEEEE
Q psy5584 1952 NHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHH 2009 (2014)
Q Consensus 1952 ~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~~h 2009 (2014)
.||.+-. +++..... ......||+|||++|++++++.+.+. |++.-.+|
T Consensus 1111 --~G~i~~~-~l~~~l~~--~~~~~~vyiCGP~~mv~~v~~~L~~~----G~~~~~I~ 1159 (1167)
T PTZ00306 1111 --VGFVDRA-LLQSALQP--PSKDLLVAICGPPVMQRAVKADLLAL----GYNMELVR 1159 (1167)
T ss_pred --CCCCCHH-HHHHhcCC--CCCCeEEEEeCCHHHHHHHHHHHHHc----CCCHHHeE
Confidence 2665532 23332211 11356799999999999999999887 55554454
No 74
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.72 E-value=1.1e-16 Score=217.83 Aligned_cols=199 Identities=22% Similarity=0.278 Sum_probs=147.7
Q ss_pred eEEEEEEEcCCCEEEEEEecCC-CCcccCCCEEEEEecCCCCCcccccccCCCCC-CCeEEEEEEecCCccHHHHhhhcc
Q psy5584 1734 LDILETELLPSDVIKIRFYRPP-NFTYHSGQWVRLACTAFKNAAYHSFTLTSAPH-ENFLSCHIKAQGPWTWKLRNYFDP 1811 (2014)
Q Consensus 1734 ~~v~~v~~l~~~v~~l~~~~p~-~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~L~~~~~~ 1811 (2014)
++|++++.++++++.++|+.|. ...++||||+.|+++.. .++|||||+|+|. ++.++|+||..|..|..|.+ ++.
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~--~~~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~-l~~ 78 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEK--GERIPLTIADADPEKGTITLVIQEVGLSTTKLCE-LNE 78 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCC--CCeeEEEeeeeCCCCCEEEEEEEEcCchHHHHhc-CCC
Confidence 3578888999999999999775 35799999999998743 3579999999874 57899999999999999975 333
Q ss_pred CCCCCCCCCcEE-EEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccH
Q psy5584 1812 CNFNASEDQPKI-RLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHF 1890 (2014)
Q Consensus 1812 ~~~~~~~~~~~v-~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l 1890 (2014)
+ ..+ .|.||||.+... ...+++||||||+||||++++++++.... .+|+++|+.|+.+++
T Consensus 79 G--------d~v~~v~GP~G~~~~~-~~~~~~llvaGG~GiaPl~~l~~~l~~~~----------~~v~l~~g~r~~~~l 139 (752)
T PRK12778 79 G--------DYITDVVGPLGNPSEI-ENYGTVVCAGGGVGVAPMLPIVKALKAAG----------NRVITILGGRSKELI 139 (752)
T ss_pred C--------CEeCeEeCCCCCCccC-CCCCeEEEEECCEeHHHHHHHHHHHHHCC----------CeEEEEeccCCHHHh
Confidence 3 378 799999998753 34579999999999999999999987641 379999999999998
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhC
Q psy5584 1891 EWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKH 1970 (2014)
Q Consensus 1891 ~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~ 1970 (2014)
. +.++|.++... + ++.|.. . +.|. .|+.+ +++..+....
T Consensus 140 ~-~~~el~~~~~~-------~-~~~t~d-g------------------------~~g~-----~G~v~--~~l~~~~~~~ 178 (752)
T PRK12778 140 I-LEDEMRESSDE-------V-IIMTDD-G------------------------SYGR-----KGLVT--DGLEEVIKRE 178 (752)
T ss_pred h-hHHHHHhhcCe-------E-EEEECC-C------------------------CCCC-----cccHH--HHHHHHhhcC
Confidence 7 56777766432 1 122221 0 0111 13322 2344333221
Q ss_pred CCCCeEEEEEeCChhhHHHHHHHHHhh
Q psy5584 1971 SYVSKIGVFSCGPRPLTKSIMSACEEV 1997 (2014)
Q Consensus 1971 ~~~~~v~V~vCGP~~m~~~vr~a~~~~ 1997 (2014)
. ....||+|||++|++++.+.+++.
T Consensus 179 ~--~~~~vy~CGP~~M~~~v~~~l~~~ 203 (752)
T PRK12778 179 T--KVDKVFAIGPAIMMKFVCLLTKKY 203 (752)
T ss_pred C--CCCEEEEECCHHHHHHHHHHHHHc
Confidence 1 123599999999999999999876
No 75
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.71 E-value=1.2e-16 Score=169.24 Aligned_cols=138 Identities=33% Similarity=0.644 Sum_probs=125.3
Q ss_pred HHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5584 1249 DKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFREA 1328 (2014)
Q Consensus 1249 eel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~ 1328 (2014)
++++..|..+|.|++|.|++.||..+++.
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~--------------------------------------------------- 48 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRS--------------------------------------------------- 48 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHH---------------------------------------------------
Confidence 46788999999999999999999998864
Q ss_pred HHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCCChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHh-cCCcH
Q psy5584 1329 YALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFS-RGHTE 1407 (2014)
Q Consensus 1329 f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~-~~~~~ 1407 (2014)
+|..++..++.+++..+|. +.+.|+|.+|+.+|.... ....+
T Consensus 49 ------------------------------------lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~ 91 (160)
T COG5126 49 ------------------------------------LGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKE 91 (160)
T ss_pred ------------------------------------cCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcH
Confidence 5677889999999999999 999999999999999876 45678
Q ss_pred HHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCc
Q psy5584 1408 DKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYK 1483 (2014)
Q Consensus 1408 e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~ 1483 (2014)
++++.+|+.||+|+||+|+..|+..+++.+++ .++++++++ |++.+|.|+||+|+|+||.+++...+
T Consensus 92 Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge-----~~~deev~~----ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 92 EELREAFKLFDKDHDGYISIGELRRVLKSLGE-----RLSDEEVEK----LLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred HHHHHHHHHhCCCCCceecHHHHHHHHHhhcc-----cCCHHHHHH----HHHhcCCCCCceEeHHHHHHHHhccC
Confidence 99999999999999999999999999999888 899998766 77889999999999999999988765
No 76
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.68 E-value=6.6e-16 Score=212.81 Aligned_cols=200 Identities=18% Similarity=0.186 Sum_probs=146.6
Q ss_pred eEEEEEEEcCCCEEEEEEecCC-CCcccCCCEEEEEecCCCCCcccccccCCCC-CCCeEEEEEEecCCccHHHHhhhcc
Q psy5584 1734 LDILETELLPSDVIKIRFYRPP-NFTYHSGQWVRLACTAFKNAAYHSFTLTSAP-HENFLSCHIKAQGPWTWKLRNYFDP 1811 (2014)
Q Consensus 1734 ~~v~~v~~l~~~v~~l~~~~p~-~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p-~~~~l~l~Ir~~G~~T~~L~~~~~~ 1811 (2014)
.+|++.+.++++++.+++..|. ...|+|||||.|+++.. .+.+||||++.+ .+++++|+|+..|..|+.|+..++.
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~--~errplSIa~~~~~~g~i~l~vk~vG~~T~~L~~~lk~ 79 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEG--AERIPLTVADFDRKKGTITMVVQALGKTTREMMTKFKA 79 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCC--CeeEEEEecCcCCCCCEEEEEEEecCcHHHHHHhcCCC
Confidence 3578888899999999999885 46799999999998653 357999999976 4578999999999999999766555
Q ss_pred CCCCCCCCCcEE-EEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccH
Q psy5584 1812 CNFNASEDQPKI-RLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHF 1890 (2014)
Q Consensus 1812 ~~~~~~~~~~~v-~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l 1890 (2014)
+. .+ .+.||+|.+.. ...++++|||||||||||++|+++.+.... .+|+++|+.|+.+++
T Consensus 80 Gd--------~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~g----------~~v~li~g~R~~~~l 140 (1006)
T PRK12775 80 GD--------TFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEAG----------ARTTGIIGFRNKDLV 140 (1006)
T ss_pred CC--------EEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhCC----------CcEEEEEeCCChHHc
Confidence 43 67 69999998764 234579999999999999999999986541 369999999998877
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhC
Q psy5584 1891 EWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKH 1970 (2014)
Q Consensus 1891 ~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~ 1970 (2014)
. +.++|..+... ++++..+. +.|. .|+. .+.+..+....
T Consensus 141 ~-~~del~~~~~~---------~~v~tddg------------------------s~G~-----~G~v--t~~l~~~l~~~ 179 (1006)
T PRK12775 141 F-WEDKFGKYCDD---------LIVCTDDG------------------------SYGK-----PGFV--TAALKEVCEKD 179 (1006)
T ss_pred c-cHHHHHhhcCc---------EEEEECCC------------------------CCCC-----CCCh--HHHHHHHhccC
Confidence 6 55666654321 23332211 0010 0322 23344433221
Q ss_pred CCCCeEEEEEeCChhhHHHHHHHHHhhh
Q psy5584 1971 SYVSKIGVFSCGPRPLTKSIMSACEEVN 1998 (2014)
Q Consensus 1971 ~~~~~v~V~vCGP~~m~~~vr~a~~~~~ 1998 (2014)
. .-.||+|||++|++.+.+.+++.+
T Consensus 180 ~---~d~vy~CGP~~Mm~av~~~~~~~g 204 (1006)
T PRK12775 180 K---PDLVVAIGPLPMMNACVETTRPFG 204 (1006)
T ss_pred C---CCEEEEECCHHHHHHHHHHHHHCC
Confidence 1 125999999999999999998763
No 77
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.67 E-value=3.1e-18 Score=173.80 Aligned_cols=99 Identities=30% Similarity=0.602 Sum_probs=7.1
Q ss_pred EeEEEEEEEcCCCEEEEEEecCCC-CcccCCCEEEEEecCCC--CCcccccccCCCCCCCeEEEEEEecCCccHHHHhhh
Q psy5584 1733 ALDILETELLPSDVIKIRFYRPPN-FTYHSGQWVRLACTAFK--NAAYHSFTLTSAPHENFLSCHIKAQGPWTWKLRNYF 1809 (2014)
Q Consensus 1733 ~~~v~~v~~l~~~v~~l~~~~p~~-~~~~pGQyv~L~~p~~~--~~e~HPFTIaS~p~~~~l~l~Ir~~G~~T~~L~~~~ 1809 (2014)
.+++++++.+++++++|+++.|.. ++|+|||||||++|.++ .+|||||||+|+|.++.++|+||+.|+||++|++.+
T Consensus 3 ~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~~~i~l~ik~~g~~T~~L~~~~ 82 (105)
T PF08022_consen 3 NVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPEDNSITLIIKARGGWTKRLYEHL 82 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCCCCEEEEEEEeCCCchHHHHHHH
Confidence 356788999999999999999986 99999999999999999 569999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCcEEEEECCCCCC
Q psy5584 1810 DPCNFNASEDQPKIRLEGPFGGG 1832 (2014)
Q Consensus 1810 ~~~~~~~~~~~~~v~IdGPyG~~ 1832 (2014)
..... ......++.||||||.+
T Consensus 83 ~~~~~-~~~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 83 SESPS-KQGNRLRVFIDGPYGAP 104 (105)
T ss_dssp ---------------TTSTTSHH
T ss_pred hhhcc-cCCCceEEEEECCCCCC
Confidence 65411 11456799999999974
No 78
>KOG0027|consensus
Probab=99.65 E-value=1.3e-15 Score=166.01 Aligned_cols=139 Identities=33% Similarity=0.547 Sum_probs=122.9
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5584 1248 EDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFRE 1327 (2014)
Q Consensus 1248 eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~ 1327 (2014)
..+++.+|+.+|.|++|+|+..|+..+++.
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~-------------------------------------------------- 36 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRS-------------------------------------------------- 36 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHH--------------------------------------------------
Confidence 357889999999999999999999998866
Q ss_pred HHHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCCChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCC--
Q psy5584 1328 AYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGH-- 1405 (2014)
Q Consensus 1328 ~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~-- 1405 (2014)
+|..++..++..+++.+|.|++|.|++.||+.++.......
T Consensus 37 -------------------------------------lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 37 -------------------------------------LGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred -------------------------------------cCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 56678889999999999999999999999999998765542
Q ss_pred ---cHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy5584 1406 ---TEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDY 1482 (2014)
Q Consensus 1406 ---~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~ 1482 (2014)
..++++.+|+.||+|++|+||.+||+.+|..++. +++.+++++ |++.+|.|+||.|+|+||+++|...
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~-----~~~~~e~~~----mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE-----KLTDEECKE----MIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC-----cCCHHHHHH----HHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 2458999999999999999999999999999987 888776555 8888999999999999999998753
No 79
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.59 E-value=1.9e-14 Score=159.10 Aligned_cols=233 Identities=14% Similarity=0.311 Sum_probs=170.7
Q ss_pred eeEeEEEEEEEcCCCEEEEEEecCC--CCcccCCCEEEEEecCCC----C----------C---------------cccc
Q psy5584 1731 YMALDILETELLPSDVIKIRFYRPP--NFTYHSGQWVRLACTAFK----N----------A---------------AYHS 1779 (2014)
Q Consensus 1731 ~~~~~v~~v~~l~~~v~~l~~~~p~--~~~~~pGQyv~L~~p~~~----~----------~---------------e~HP 1779 (2014)
++.++|++-.....-+.+|++..|. ...++||-|+.|.+|.-. . | .-+.
T Consensus 134 kWectViSNdN~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rA 213 (410)
T COG2871 134 KWECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRA 213 (410)
T ss_pred ceeEEEEeCCchhhhhhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHH
Confidence 4556666555444455667777664 678999999999988421 0 1 1267
Q ss_pred cccCCCCCC-CeEEEEEEecC-----------CccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEe
Q psy5584 1780 FTLTSAPHE-NFLSCHIKAQG-----------PWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGG 1847 (2014)
Q Consensus 1780 FTIaS~p~~-~~l~l~Ir~~G-----------~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaG 1847 (2014)
||+||.|++ +.+.|-||... -.+.-++.+ +++.++.|.||||.++.. +....+|+|+|
T Consensus 214 YSmAsYPeE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sL---------KpGDKvtisGPfGEfFaK-dtdaemvFigG 283 (410)
T COG2871 214 YSMASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSL---------KPGDKVTISGPFGEFFAK-DTDAEMVFIGG 283 (410)
T ss_pred hhhhcChhhcCeEEEEEEeccCCCCCCCCCccceeeeEEee---------cCCCeEEEeccchhhhhc-cCCCceEEEec
Confidence 999999976 66789898652 222222211 456799999999998743 34568999999
Q ss_pred ccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchh
Q psy5584 1848 GIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTT 1927 (2014)
Q Consensus 1848 GiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~ 1927 (2014)
|.|.+|+.|.+-+++.+..+. |++.|-++.|+.++.. +.++.++|+... ++++-|+.++.+..+
T Consensus 284 GAGmapmRSHIfDqL~rlhSk-------Rkis~WYGARS~rE~f-Y~Ed~d~L~ae~--pNF~wH~aLSdplpE------ 347 (410)
T COG2871 284 GAGMAPMRSHIFDQLKRLHSK-------RKISFWYGARSLREMF-YQEDFDQLQAEN--PNFHWHLALSDPLPE------ 347 (410)
T ss_pred CcCcCchHHHHHHHHHhhccc-------ceeeeeeccchHHHhH-HHHHHHHHHhhC--CCcEEEEEecCCCCc------
Confidence 999999999999888876555 7999999999999876 778888888764 789999999886432
Q ss_pred hhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhhhcCCCCCeEE
Q psy5584 1928 MLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFI 2007 (2014)
Q Consensus 1928 ~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~~~~~g~~~~~ 2007 (2014)
+-|+|....+| ..+.......|+..++...|+||||-|..+|-+.+..+ |+.+-.
T Consensus 348 ---------------DnW~g~TgFih------nv~~en~Lk~h~aPEDceyYmCGPp~mNasvikmL~dl----GVE~en 402 (410)
T COG2871 348 ---------------DNWDGYTGFIH------NVLYENYLKDHEAPEDCEYYMCGPPLMNASVIKMLKDL----GVEREN 402 (410)
T ss_pred ---------------CCcccchhHHH------HHHHhhhhhcCCCchheeEEeeCcchhhHHHHHHHHhc----Cccccc
Confidence 23444332222 33344555667777889999999999999999999998 777777
Q ss_pred EEEecCC
Q psy5584 2008 HHFENFG 2014 (2014)
Q Consensus 2008 ~h~E~Fg 2014 (2014)
+.-+.||
T Consensus 403 IlLDDFG 409 (410)
T COG2871 403 ILLDDFG 409 (410)
T ss_pred eeecccC
Confidence 7777776
No 80
>KOG0028|consensus
Probab=99.58 E-value=2.9e-14 Score=146.36 Aligned_cols=109 Identities=26% Similarity=0.512 Sum_probs=99.0
Q ss_pred hCCCChHHHHHHHHHHHccCCCCceeHHHHHHHHHH-HhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcC
Q psy5584 1365 LGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVL-FSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMART 1443 (2014)
Q Consensus 1365 Lg~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~-~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~ 1443 (2014)
+|..+.++++..+...+|+++.|.|+|++|+..+.. +....+.++++.+|+.+|.|++|.||..+|+.+.+.+++
T Consensus 62 lGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLge---- 137 (172)
T KOG0028|consen 62 LGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGE---- 137 (172)
T ss_pred cCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCc----
Confidence 577788899999999999999999999999998654 455578999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy5584 1444 TSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDY 1482 (2014)
Q Consensus 1444 ~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~ 1482 (2014)
.++++++.+ |++++|.|+||.|+-+||..+|++.
T Consensus 138 -nltD~El~e----MIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 138 -NLTDEELME----MIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred -cccHHHHHH----HHHHhcccccccccHHHHHHHHhcC
Confidence 999999877 6677999999999999999998764
No 81
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.57 E-value=2.1e-14 Score=178.49 Aligned_cols=190 Identities=12% Similarity=0.134 Sum_probs=131.6
Q ss_pred CCcccCCCEEEEEecCCCCCcccccccCCCCC--CCeEEEEEEec----------CCccHHHHhhhccCCCCCCCCCcEE
Q psy5584 1756 NFTYHSGQWVRLACTAFKNAAYHSFTLTSAPH--ENFLSCHIKAQ----------GPWTWKLRNYFDPCNFNASEDQPKI 1823 (2014)
Q Consensus 1756 ~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~--~~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~~~~~v 1823 (2014)
..++.||||+.+..| ...|+|||||+|. ++.++|+|+.. |-.|..|.+....+ .+|
T Consensus 129 ~~~~~~gq~l~l~~~----~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~~G--------d~v 196 (360)
T cd06199 129 PARLTAEELLDLLRP----LQPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEG--------DTV 196 (360)
T ss_pred CCCCCHHHHHHhCcC----CCCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCCCC--------CEE
Confidence 467889999999743 3679999999995 47899999854 78888888765443 378
Q ss_pred EEECCC-CCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCc-ccHHHHHHHHHHHH
Q psy5584 1824 RLEGPF-GGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSH-KHFEWFIDVLRDVE 1901 (2014)
Q Consensus 1824 ~IdGPy-G~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~-~~l~w~~~~L~~l~ 1901 (2014)
.|.+|. |.+..+.....++|||||||||||++|++++....... .++.|+|++|+. +++. |.++|++++
T Consensus 197 ~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~--------~~~~L~~G~R~~~~D~~-y~~el~~~~ 267 (360)
T cd06199 197 PVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGAK--------GKNWLFFGERHFATDFL-YQDELQQWL 267 (360)
T ss_pred EEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccCC--------CcEEEEEcCCCCccchh-HHHHHHHHH
Confidence 888755 46664434457999999999999999999988754322 479999999997 5665 889999987
Q ss_pred hcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEe
Q psy5584 1902 KKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSC 1981 (2014)
Q Consensus 1902 ~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vC 1981 (2014)
+.. ..++++..+++.... .. ++... + . -+...+.+ +.. +...||+|
T Consensus 268 ~~~--~~~~~~~a~Sr~~~~----~~--yVq~~-l------------------~-~~~~~~~~-~~~-----~~~~vYvC 313 (360)
T cd06199 268 KDG--VLTRLDTAFSRDQAE----KV--YVQDR-M------------------R-EQGAELWA-WLE-----EGAHFYVC 313 (360)
T ss_pred HcC--CCeEEEEEEccCCCC----Cc--cHHHH-H------------------H-HhHHHHHH-HHh-----CCCEEEEE
Confidence 643 456777777774211 00 00000 0 0 00011111 111 13569999
Q ss_pred CCh-hhHHHHHHHHHhhhcC
Q psy5584 1982 GPR-PLTKSIMSACEEVNKG 2000 (2014)
Q Consensus 1982 GP~-~m~~~vr~a~~~~~~~ 2000 (2014)
||+ +|+++|++++.+.-.+
T Consensus 314 G~~~~M~~~V~~~L~~i~~~ 333 (360)
T cd06199 314 GDAKRMAKDVDAALLDIIAT 333 (360)
T ss_pred CCCccccHHHHHHHHHHHHH
Confidence 999 8999999999876543
No 82
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.53 E-value=5e-14 Score=185.00 Aligned_cols=189 Identities=11% Similarity=0.178 Sum_probs=130.8
Q ss_pred CcccCCCEEEEEecCCCCCcccccccCCCCC--CCeEEEEEEec----------CCccHHHHhhhccCCCCCCCCCcEEE
Q psy5584 1757 FTYHSGQWVRLACTAFKNAAYHSFTLTSAPH--ENFLSCHIKAQ----------GPWTWKLRNYFDPCNFNASEDQPKIR 1824 (2014)
Q Consensus 1757 ~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~--~~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~~~~~v~ 1824 (2014)
.++.||||+.+..| ...|||||+|+|. ++.+.|+|+.+ |..|..|.+.++.+. +|.
T Consensus 367 ~~~~~gq~v~ll~~----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd--------~v~ 434 (597)
T TIGR01931 367 ADLDAEQLISLLRP----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGD--------TVP 434 (597)
T ss_pred CCCCHHHHHHhCcc----cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCC--------EEE
Confidence 57899999999854 4789999999994 57899999864 889999987655543 788
Q ss_pred EECCCC-CCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCC-cccHHHHHHHHHHHHh
Q psy5584 1825 LEGPFG-GGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPS-HKHFEWFIDVLRDVEK 1902 (2014)
Q Consensus 1825 IdGPyG-~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~-~~~l~w~~~~L~~l~~ 1902 (2014)
|.||.| .+..+.....++||||||||||||+|+++++...... .++.|+|++|+ .+++. |.++|+.+.+
T Consensus 435 v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~--------g~~~LffG~R~~~~D~l-y~~El~~~~~ 505 (597)
T TIGR01931 435 VYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGAK--------GKNWLFFGNPHFTTDFL-YQVEWQNYLK 505 (597)
T ss_pred EEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccCC--------CCEEEEECCCCCCcchh-HHHHHHHHHH
Confidence 888654 5654434456899999999999999999998765332 47999999998 56765 7888888876
Q ss_pred cCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeC
Q psy5584 1903 KDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCG 1982 (2014)
Q Consensus 1903 ~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCG 1982 (2014)
.. ...++++.+++.... .. |+... +. =+..++.+.+ . . ...||+||
T Consensus 506 ~~--~l~~l~~afSRd~~~----k~--yVqd~-l~-------------------e~~~~~~~~l-~---~--~a~vYvCG 551 (597)
T TIGR01931 506 KG--VLTKMDLAFSRDQAE----KI--YVQHR-IR-------------------EQGAELWQWL-Q---E--GAHIYVCG 551 (597)
T ss_pred cC--CCceeEEEEecCCCC----Cc--cHHHH-HH-------------------HhHHHHHHHH-h---C--CcEEEEEC
Confidence 52 334566666663110 00 10000 00 0001111111 1 1 34699999
Q ss_pred -ChhhHHHHHHHHHhhhcC
Q psy5584 1983 -PRPLTKSIMSACEEVNKG 2000 (2014)
Q Consensus 1983 -P~~m~~~vr~a~~~~~~~ 2000 (2014)
|+.|+++|++++.+...+
T Consensus 552 ~~~~M~~~V~~~L~~i~~~ 570 (597)
T TIGR01931 552 DAKKMAKDVHQALLDIIAK 570 (597)
T ss_pred CCccccHHHHHHHHHHHHH
Confidence 889999999999877644
No 83
>KOG4223|consensus
Probab=99.52 E-value=8.6e-14 Score=159.19 Aligned_cols=223 Identities=18% Similarity=0.260 Sum_probs=159.4
Q ss_pred hCCCCcHHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCC
Q psy5584 1206 LGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTT 1285 (2014)
Q Consensus 1206 L~~~~~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~ 1285 (2014)
|+...+.+.+..++..+|.++||.|+..|+..++....+....++...-|..+|.|.||.|+++|....+..... .+ .
T Consensus 70 l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~-~~-~ 147 (325)
T KOG4223|consen 70 LTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVD-LP-D 147 (325)
T ss_pred hCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhccc-Cc-c
Confidence 334446778999999999999999999999999988666666678888999999999999999999988754321 00 0
Q ss_pred CCCHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccccccHHHHHHHh
Q psy5584 1286 SLTDSQVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASAL 1365 (2014)
Q Consensus 1286 ~~s~~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~L 1365 (2014)
...+.+.....++ +-...+..|. ..|.|++ |.++++||...|
T Consensus 148 ~~~d~e~~~~~~k----------------------m~~rDe~rFk----------~AD~d~d------g~lt~EEF~aFL 189 (325)
T KOG4223|consen 148 EFPDEEDNEEYKK----------------------MIARDEERFK----------AADQDGD------GSLTLEEFTAFL 189 (325)
T ss_pred ccccchhcHHHHH----------------------HHHHHHHHHh----------hcccCCC------CcccHHHHHhcc
Confidence 0000111111111 1111111111 1234444 599999999999
Q ss_pred CC----CChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcH-----HHHHHHHhhhcCCCCCeeeHHHHHHHHHH
Q psy5584 1366 GM----KSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTE-----DKLRIIFDMCDNDRNGVIDKGELAEMLRS 1436 (2014)
Q Consensus 1366 g~----~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~-----e~l~~~F~~~D~DgdG~Is~eEf~~~L~~ 1436 (2014)
.+ .+..-.++.-+...|+|+||+|+++||+.-+........+ .+-.++|..+|+|+||+++.+|++..+.
T Consensus 190 HPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~- 268 (325)
T KOG4223|consen 190 HPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWIL- 268 (325)
T ss_pred ChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccC-
Confidence 54 3456678889999999999999999999988765532211 1345778899999999999999998775
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q psy5584 1437 LVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKL 1477 (2014)
Q Consensus 1437 l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~ 1477 (2014)
+-.....+..+..++.++|.|+||++|++|.+.
T Consensus 269 --------P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 269 --------PSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred --------CCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 333344455567788999999999999999664
No 84
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.52 E-value=1e-13 Score=174.24 Aligned_cols=192 Identities=11% Similarity=0.173 Sum_probs=126.9
Q ss_pred ccCCCEEEEEecCCCCCcccccccCCCCC--CCeEEEEEEe------------cCCccHHHHhhhccCCCCCCCCCcEEE
Q psy5584 1759 YHSGQWVRLACTAFKNAAYHSFTLTSAPH--ENFLSCHIKA------------QGPWTWKLRNYFDPCNFNASEDQPKIR 1824 (2014)
Q Consensus 1759 ~~pGQyv~L~~p~~~~~e~HPFTIaS~p~--~~~l~l~Ir~------------~G~~T~~L~~~~~~~~~~~~~~~~~v~ 1824 (2014)
...||++.+. |. ...|||||+|+|. ++.+.+.|+. .|..|..|.+ +..+. ...+.
T Consensus 147 ~~~~~~l~~~-p~---l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~-l~~Gd------~v~v~ 215 (384)
T cd06206 147 LPLATFLAML-PP---MRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSS-LRPGD------SIHVS 215 (384)
T ss_pred CCHHHHHHhC-cc---cCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhh-CCCCC------eEEEE
Confidence 3458888886 43 4679999999984 3556666654 4678888864 33332 22334
Q ss_pred EECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCc-ccHHHHHHHHHHHHhc
Q psy5584 1825 LEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSH-KHFEWFIDVLRDVEKK 1903 (2014)
Q Consensus 1825 IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~-~~l~w~~~~L~~l~~~ 1903 (2014)
+.||+|.+..+.....++|||||||||||++|++++.......+ ....++.|+|++|+. +++. |.++|+++++.
T Consensus 216 i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~----~~~~~v~L~~G~R~~~~d~l-y~~el~~~~~~ 290 (384)
T cd06206 216 VRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQG----RKLAPALLFFGCRHPDHDDL-YRDELEEWEAA 290 (384)
T ss_pred EecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcC----CCcCCEEEEEeCCCCCcccc-hHHHHHHHHHC
Confidence 67999998754445678999999999999999999876542111 122479999999998 5665 88999988763
Q ss_pred CCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCC
Q psy5584 1904 DVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGP 1983 (2014)
Q Consensus 1904 ~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP 1983 (2014)
..++++..+++.... ... ++ + ++. .+-.+.+.+... ++..||+|||
T Consensus 291 ---~~~~l~~a~Sr~~~~---~~~--yV-----q-----------------~~i--~~~~~~~~~~~~--~~~~vyiCGp 336 (384)
T cd06206 291 ---GVVSVRRAYSRPPGG---GCR--YV-----Q-----------------DRL--WAEREEVWELWE--QGARVYVCGD 336 (384)
T ss_pred ---CCeEEEEEecccCCC---CCE--ec-----h-----------------hhH--HhhHHHHHHHHH--CCcEEEEECC
Confidence 457888888774221 000 00 0 000 000111111111 2456999999
Q ss_pred hhhHHHHHHHHHhhhcC
Q psy5584 1984 RPLTKSIMSACEEVNKG 2000 (2014)
Q Consensus 1984 ~~m~~~vr~a~~~~~~~ 2000 (2014)
++|+++|++++.+...+
T Consensus 337 ~~M~~~v~~~L~~i~~~ 353 (384)
T cd06206 337 GRMAPGVREVLKRIYAE 353 (384)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 99999999999887654
No 85
>KOG0034|consensus
Probab=99.52 E-value=1.6e-13 Score=151.25 Aligned_cols=117 Identities=25% Similarity=0.522 Sum_probs=103.3
Q ss_pred HHHHHHHHHccCCCCc-eeHHHHHHHHHHHhcCCcHH-HHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHH
Q psy5584 1373 FVRMMFNIVDKDGDGR-ISFQEFLDTVVLFSRGHTED-KLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQ 1450 (2014)
Q Consensus 1373 ~l~~lf~~~D~DgdG~-Isf~EFl~~l~~~~~~~~~e-~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e 1450 (2014)
...++++.+|.+++|. |+|+||+..+..+......+ +++.+|++||.+++|+|+.+|+..++..+..... ..++++
T Consensus 67 ~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~--~~~~e~ 144 (187)
T KOG0034|consen 67 LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGEND--DMSDEQ 144 (187)
T ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCC--cchHHH
Confidence 4778999999999888 99999999999988775555 9999999999999999999999999998754211 124899
Q ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCcccchhccc
Q psy5584 1451 VTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYKGDFVAIGL 1491 (2014)
Q Consensus 1451 ~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~~~l~~~~~ 1491 (2014)
++++++.+|.++|.|+||+|||+||.+.+.+.|...+.+++
T Consensus 145 ~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~~ 185 (187)
T KOG0034|consen 145 LEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLEKMTI 185 (187)
T ss_pred HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHHcCC
Confidence 99999999999999999999999999999999998887765
No 86
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.51 E-value=1.4e-13 Score=172.76 Aligned_cols=180 Identities=16% Similarity=0.205 Sum_probs=124.3
Q ss_pred CCcccccccCCCCC--CCeEEEEEEec-----------CCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCc
Q psy5584 1774 NAAYHSFTLTSAPH--ENFLSCHIKAQ-----------GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFE 1840 (2014)
Q Consensus 1774 ~~e~HPFTIaS~p~--~~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~ 1840 (2014)
..+.|||||+|+|. ++.++|+|+.. |-.|..|.+ +.. +.++.|.||+|.+..+.....
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~--------Gd~v~v~~p~g~F~lp~~~~~ 231 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAG-LKV--------GQRVTVFIKKSSFKLPKDPKK 231 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhh-cCC--------CCEEEEEEECCcccCCCCCCC
Confidence 46789999999995 47899999865 667777764 333 338999999998775434457
Q ss_pred eEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCc-ccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCC
Q psy5584 1841 VAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSH-KHFEWFIDVLRDVEKKDVTNVLEIHIFITQFF 1919 (2014)
Q Consensus 1841 ~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~-~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~ 1919 (2014)
++||||||||||||+|++++.......+ ....++.|+|++|+. +++. |.++|+++++. ...+++++..+++.
T Consensus 232 plImIa~GtGIAP~rs~l~~~~~~~~~~----~~~~~~~L~~G~R~~~~d~~-y~~el~~~~~~--~~~~~~~~a~Srd~ 304 (382)
T cd06207 232 PIIMVGPGTGLAPFRAFLQERAALLAQG----PEIGPVLLYFGCRHEDKDYL-YKEELEEYEKS--GVLTTLGTAFSRDQ 304 (382)
T ss_pred CEEEEcCCccHHHHHHHHHHHHHHhhcC----ccCCCEEEEECCCCCCcccc-HHHHHHHHHhC--CCCceEEEEecCCC
Confidence 8999999999999999999876532111 123589999999998 6654 88999988864 34567888777742
Q ss_pred CCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChh-hHHHHHHHHHhhh
Q psy5584 1920 HKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRP-LTKSIMSACEEVN 1998 (2014)
Q Consensus 1920 ~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~-m~~~vr~a~~~~~ 1998 (2014)
.. .. |+ + +..+-+.+.+.+.+. . ....||+|||++ |+++|++++.+..
T Consensus 305 ~~----~~--yV-----q---------------~~l~~~~~~~~~~l~----~-~~~~vYvCG~~~~M~~~V~~~L~~~~ 353 (382)
T cd06207 305 PK----KV--YV-----Q---------------DLIRENSDLVYQLLE----E-GAGVIYVCGSTWKMPPDVQEAFEEIL 353 (382)
T ss_pred CC----ce--Eh-----H---------------HHHHHCHHHHHHHHh----c-CCCEEEEECCcccccHHHHHHHHHHH
Confidence 21 00 00 0 001111122222221 1 134699999998 9999999998876
Q ss_pred cC
Q psy5584 1999 KG 2000 (2014)
Q Consensus 1999 ~~ 2000 (2014)
.+
T Consensus 354 ~~ 355 (382)
T cd06207 354 KK 355 (382)
T ss_pred HH
Confidence 43
No 87
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.50 E-value=5.3e-13 Score=141.87 Aligned_cols=144 Identities=22% Similarity=0.365 Sum_probs=129.7
Q ss_pred cCcCHHHHHHHhCCCCcHHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHH
Q psy5584 1195 TSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEM 1274 (2014)
Q Consensus 1195 ~~Ls~~El~~~L~~~~~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~ 1274 (2014)
..++.+|.+ ++++.|..+|.|++|.|+..||..+++.++...++.++..+|..+|. ++|.|++.||..+
T Consensus 12 ~~~t~~qi~----------~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ 80 (160)
T COG5126 12 TQLTEEQIQ----------ELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTV 80 (160)
T ss_pred ccCCHHHHH----------HHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHH
Confidence 456666664 48999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccc
Q psy5584 1275 LRSLVEMARTTSLTDSQVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRT 1354 (2014)
Q Consensus 1275 l~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g 1354 (2014)
+...
T Consensus 81 ms~~---------------------------------------------------------------------------- 84 (160)
T COG5126 81 MSVK---------------------------------------------------------------------------- 84 (160)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 8542
Q ss_pred cccHHHHHHHhCCCChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHH
Q psy5584 1355 SLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEML 1434 (2014)
Q Consensus 1355 ~ls~~Ef~~~Lg~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L 1434 (2014)
+....+.+++...|+.+|+|++|+|+..|+..++..+....+++++..+++.+|.|++|.|+.+||.+.+
T Consensus 85 ----------~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 85 ----------LKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred ----------hccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 1123456789999999999999999999999999999888999999999999999999999999999987
Q ss_pred H
Q psy5584 1435 R 1435 (2014)
Q Consensus 1435 ~ 1435 (2014)
.
T Consensus 155 ~ 155 (160)
T COG5126 155 K 155 (160)
T ss_pred h
Confidence 5
No 88
>PTZ00183 centrin; Provisional
Probab=99.48 E-value=5.2e-13 Score=146.92 Aligned_cols=108 Identities=26% Similarity=0.467 Sum_probs=92.6
Q ss_pred CCChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHh-cCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCC
Q psy5584 1367 MKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFS-RGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTS 1445 (2014)
Q Consensus 1367 ~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~-~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ 1445 (2014)
...+...+..++..+|.+++|.|+++||+..+.... ....++.++.+|+.+|++++|.|+.+||..++..++. .
T Consensus 48 ~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-----~ 122 (158)
T PTZ00183 48 FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGE-----T 122 (158)
T ss_pred CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-----C
Confidence 344556788999999999999999999999877643 3456678999999999999999999999999987665 7
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCc
Q psy5584 1446 LTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYK 1483 (2014)
Q Consensus 1446 ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~ 1483 (2014)
++++++.+ +|..+|.|++|.|+|+||..++.+.|
T Consensus 123 l~~~~~~~----~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 123 ITDEELQE----MIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred CCHHHHHH----HHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 88887655 78889999999999999999998866
No 89
>KOG0044|consensus
Probab=99.48 E-value=4.8e-13 Score=147.31 Aligned_cols=123 Identities=26% Similarity=0.439 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCC--CC
Q psy5584 1370 DAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTS--LT 1447 (2014)
Q Consensus 1370 s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~--ls 1447 (2014)
+....+.+|+.+|.|+||.|+|.||+..+....++..+++++-+|++||.||+|+|+++|+..+++.+..+.+... ..
T Consensus 62 ~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~ 141 (193)
T KOG0044|consen 62 ASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPED 141 (193)
T ss_pred HHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcc
Confidence 4567899999999999999999999999999999999999999999999999999999999999998776544312 22
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCcccchhcccc
Q psy5584 1448 DSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYKGDFVAIGLD 1492 (2014)
Q Consensus 1448 ~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~~~l~~~~~~ 1492 (2014)
++..++.++.+|+.+|.|+||.||++||+......+..+..++.+
T Consensus 142 ~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l~~~ 186 (193)
T KOG0044|consen 142 EETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILRALEQD 186 (193)
T ss_pred cccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHHHhhhc
Confidence 444677899999999999999999999999999999998887654
No 90
>KOG0027|consensus
Probab=99.44 E-value=1.6e-12 Score=141.79 Aligned_cols=142 Identities=27% Similarity=0.437 Sum_probs=126.2
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHHH
Q psy5584 1212 AVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQ 1291 (2014)
Q Consensus 1212 ~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~e 1291 (2014)
...++.+|..+|+|++|+|+..|+..+++.++...+++++..+++.+|.|++|.|+++||..++.......
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~--------- 77 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEK--------- 77 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccc---------
Confidence 35689999999999999999999999999999999999999999999999999999999999986632100
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCCChH
Q psy5584 1292 VTELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDA 1371 (2014)
Q Consensus 1292 ~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~~s~ 1371 (2014)
.. ...+.
T Consensus 78 -------------------------------------------------------~~------------------~~~~~ 84 (151)
T KOG0027|consen 78 -------------------------------------------------------TD------------------EEASS 84 (151)
T ss_pred -------------------------------------------------------cc------------------ccccH
Confidence 00 00245
Q ss_pred HHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHH
Q psy5584 1372 VFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLR 1435 (2014)
Q Consensus 1372 ~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~ 1435 (2014)
+++.+.|+.+|+|++|.|+..|+..++..+....+.+++..+++..|.|+||.|+.+||..++.
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 6799999999999999999999999999999989999999999999999999999999999875
No 91
>PTZ00184 calmodulin; Provisional
Probab=99.43 E-value=2.2e-12 Score=140.25 Aligned_cols=105 Identities=33% Similarity=0.560 Sum_probs=88.6
Q ss_pred CChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhc-CCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCC
Q psy5584 1368 KSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSR-GHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSL 1446 (2014)
Q Consensus 1368 ~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~-~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~l 1446 (2014)
.++...+..++..+|.+++|.|+|+||+.++..... ....+.++.+|+.+|.|++|.|+.+||..++..++. .+
T Consensus 43 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~-----~~ 117 (149)
T PTZ00184 43 NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE-----KL 117 (149)
T ss_pred CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCC-----CC
Confidence 344567899999999999999999999998876533 345678999999999999999999999999987654 67
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy5584 1447 TDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRD 1481 (2014)
Q Consensus 1447 s~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~ 1481 (2014)
+.++++. +++.+|.+++|.|+|+||..++..
T Consensus 118 ~~~~~~~----~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 118 TDEEVDE----MIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred CHHHHHH----HHHhcCCCCCCcCcHHHHHHHHhc
Confidence 7776555 778899999999999999998753
No 92
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.42 E-value=2.7e-12 Score=161.76 Aligned_cols=189 Identities=14% Similarity=0.188 Sum_probs=122.6
Q ss_pred CCcccccccCCCCCC--CeEEEEEEec-----CCccHHHHhhhccCCCCCCCCCcEEEEEC-CCCCCCCCcC-CCceEEE
Q psy5584 1774 NAAYHSFTLTSAPHE--NFLSCHIKAQ-----GPWTWKLRNYFDPCNFNASEDQPKIRLEG-PFGGGNQDWY-KFEVAVM 1844 (2014)
Q Consensus 1774 ~~e~HPFTIaS~p~~--~~l~l~Ir~~-----G~~T~~L~~~~~~~~~~~~~~~~~v~IdG-PyG~~~~~~~-~~~~vvl 1844 (2014)
..+.|+|||+|+|.. +.++|+|+.. |-.|..|.++..... ..+.++.+.| |.|.+..+.. ...++||
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~----~~G~~v~i~~~~~g~F~lp~~~~~~piIm 246 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSAS----SHGVKVPFYLRSSSRFRLPPDDLRRPIIM 246 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhhc----CCCCEEEEEEecCCCcCCCCcCCCCCEEE
Confidence 457899999999954 7899998875 668888887653110 1234788888 6777765433 3578999
Q ss_pred EEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCc-ccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCC
Q psy5584 1845 VGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSH-KHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFD 1923 (2014)
Q Consensus 1845 IaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~-~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d 1923 (2014)
||||||||||+|++++........ +.....++.|+|++|+. .++. |.++|+++++.. ...++++.++++....
T Consensus 247 Ia~GtGIAP~rs~lq~~~~~~~~~--~~~~~~~~~Lf~G~R~~~~d~~-y~~El~~~~~~~--~~~~~~~a~SRd~~~~- 320 (398)
T cd06203 247 VGPGTGVAPFLGFLQHREKLKESH--TETVFGEAWLFFGCRHRDRDYL-FRDELEEFLEEG--ILTRLIVAFSRDENDG- 320 (398)
T ss_pred EcCCcChHHHHHHHHHHHHHHhhc--ccCCCCCEEEEEeCCCCCcchh-HHHHHHHHHHcC--CCceEEEEECCCCCCC-
Confidence 999999999999999876532111 01223589999999998 5665 889999988643 4556777788753211
Q ss_pred cchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCC-hhhHHHHHHHHHhhhc
Q psy5584 1924 LRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGP-RPLTKSIMSACEEVNK 1999 (2014)
Q Consensus 1924 ~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP-~~m~~~vr~a~~~~~~ 1999 (2014)
.... |+ | +.-+-+...+.+.+.. .+..||+||| +.|.++|++++.+...
T Consensus 321 g~k~--yV-----q---------------d~l~~~~~~~~~~l~~-----~~~~iYvCG~~~~M~~~V~~~l~~i~~ 370 (398)
T cd06203 321 STPK--YV-----Q---------------DKLEERGKKLVDLLLN-----SNAKIYVCGDAKGMAKDVRDTFVDILS 370 (398)
T ss_pred CCce--ec-----c---------------hHHHhCHHHHHHHHhc-----CCcEEEEECCcchhhHHHHHHHHHHHH
Confidence 0000 00 0 0000011111111111 2456999998 5899999999986543
No 93
>PRK06214 sulfite reductase; Provisional
Probab=99.41 E-value=4.5e-12 Score=161.97 Aligned_cols=177 Identities=14% Similarity=0.200 Sum_probs=116.0
Q ss_pred CCCcccccccCCCCC--CCeEEEEEEec----------CCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCc
Q psy5584 1773 KNAAYHSFTLTSAPH--ENFLSCHIKAQ----------GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFE 1840 (2014)
Q Consensus 1773 ~~~e~HPFTIaS~p~--~~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~ 1840 (2014)
.....|||||+|+|. ++.++|+|+.. |-.|..|.+.+..+. ...+++.+|+| |..+.....
T Consensus 312 p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~~Gd------~V~v~i~~~~g-F~lp~~~~~ 384 (530)
T PRK06214 312 DPLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLAPGT------RVRVYVQKAHG-FALPADPNT 384 (530)
T ss_pred CCCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcCCCCC------EEEEEecCCCC-CccCCCCCC
Confidence 346889999999995 57899999864 777888876655542 22344466777 654333456
Q ss_pred eEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCc-ccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCC
Q psy5584 1841 VAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSH-KHFEWFIDVLRDVEKKDVTNVLEIHIFITQFF 1919 (2014)
Q Consensus 1841 ~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~-~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~ 1919 (2014)
++||||+|||||||+|+|++....... .+++|+|++|.. .++. |.++|+++.+.. ...++++..++..
T Consensus 385 PiImIg~GTGIAPfrsfLq~r~~~~~~--------g~~~LffG~R~~~~D~l-y~dEL~~l~~~g--~l~~l~~afSRd~ 453 (530)
T PRK06214 385 PIIMVGPGTGIAPFRAFLHERAATKAP--------GRNWLFFGHQRSATDFF-YEDELNGLKAAG--VLTRLSLAWSRDG 453 (530)
T ss_pred CEEEEcCCeeHHHHHHHHHHHHHhcCC--------CCeEEEEEecCChhhhH-HHHHHHHHHHhC--CceEEEEEEecCC
Confidence 899999999999999999987654322 378999999765 4554 889999988652 4455677777642
Q ss_pred CCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChh-hHHHHHHHHHhhh
Q psy5584 1920 HKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRP-LTKSIMSACEEVN 1998 (2014)
Q Consensus 1920 ~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~-m~~~vr~a~~~~~ 1998 (2014)
.. . .|+. +|. .+....+.+... ....||+|||.. |.++|++++.+..
T Consensus 454 ~~----k--~YVQ----------------------~~L--~e~~~~l~~~l~--~~a~iYVCGp~~~M~~~V~~~L~~il 501 (530)
T PRK06214 454 EE----K--TYVQ----------------------DRM--RENGAELWKWLE--EGAHFYVCGDAKRMAKDVERALVDIV 501 (530)
T ss_pred CC----C--Cchh----------------------hHH--HHHHHHHHhhhc--CCcEEEEeCChHHHHHHHHHHHHHHH
Confidence 11 0 0000 110 000111111111 245699999975 7799999887765
Q ss_pred c
Q psy5584 1999 K 1999 (2014)
Q Consensus 1999 ~ 1999 (2014)
.
T Consensus 502 ~ 502 (530)
T PRK06214 502 A 502 (530)
T ss_pred H
Confidence 4
No 94
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.40 E-value=3.6e-12 Score=161.28 Aligned_cols=185 Identities=14% Similarity=0.163 Sum_probs=123.0
Q ss_pred CCcccccccCCCCC--CCeEEEEEEec-----------CCccHHHHhhhccCCC------------CCCCCCcEEEEECC
Q psy5584 1774 NAAYHSFTLTSAPH--ENFLSCHIKAQ-----------GPWTWKLRNYFDPCNF------------NASEDQPKIRLEGP 1828 (2014)
Q Consensus 1774 ~~e~HPFTIaS~p~--~~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~------------~~~~~~~~v~IdGP 1828 (2014)
..+.|+|||+|+|. .+.+++.|+.. |-.|..|.+....... .....+..+.+.+|
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~ 254 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVR 254 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEe
Confidence 46889999999994 46788888753 6677888776531100 00014557888889
Q ss_pred CCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCc-ccHHHHHHHHHHHHhcCCCC
Q psy5584 1829 FGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSH-KHFEWFIDVLRDVEKKDVTN 1907 (2014)
Q Consensus 1829 yG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~-~~l~w~~~~L~~l~~~~~~~ 1907 (2014)
.|.+..+.....++|||||||||||++|++++.......+ ....++.|+|++|+. +++. |.++|+++++. ..
T Consensus 255 ~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~----~~~~~v~L~~G~R~~~~d~l-y~~el~~~~~~--~~ 327 (416)
T cd06204 255 RSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESG----KKVGPTLLFFGCRHPDEDFI-YKDELEEYAKL--GG 327 (416)
T ss_pred cCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhcc----CccCCEEEEEcCCCCCcccc-hHHHHHHHHHc--CC
Confidence 9987654444579999999999999999999865432111 123589999999998 5665 78899988764 25
Q ss_pred cEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCC--CHHHHHHHHHHhCCCCCeEEEEEeCChh
Q psy5584 1908 VLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRP--DMSSFLKFVQKKHSYVSKIGVFSCGPRP 1985 (2014)
Q Consensus 1908 ~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRP--d~~~il~~l~~~~~~~~~v~V~vCGP~~ 1985 (2014)
.++++..+++.... ...+ + +|. +.+.+.+.+ . . ...||+|||++
T Consensus 328 ~~~l~~a~Sr~~~~----k~yV-------q-----------------~~i~~~~~~~~~~l-~---~--~~~vYvCGp~~ 373 (416)
T cd06204 328 LLELVTAFSREQPK----KVYV-------Q-----------------HRLAEHAEQVWELI-N---E--GAYIYVCGDAK 373 (416)
T ss_pred ceEEEEEECcCCCC----Ccch-------H-----------------HHHHHhHHHHHHHH-H---c--CCEEEEECCcc
Confidence 67777777774210 0000 0 111 111111111 1 1 35699999998
Q ss_pred -hHHHHHHHHHhhhc
Q psy5584 1986 -LTKSIMSACEEVNK 1999 (2014)
Q Consensus 1986 -m~~~vr~a~~~~~~ 1999 (2014)
|+++|++++.+.-.
T Consensus 374 ~M~~~V~~~L~~i~~ 388 (416)
T cd06204 374 NMARDVEKTLLEILA 388 (416)
T ss_pred cchHHHHHHHHHHHH
Confidence 99999999987654
No 95
>KOG0037|consensus
Probab=99.39 E-value=1.2e-11 Score=134.66 Aligned_cols=141 Identities=28% Similarity=0.503 Sum_probs=125.5
Q ss_pred cCcCHHHHHHHhC----CCCcHHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHH
Q psy5584 1195 TSLSRAEFASALG----MKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGE 1270 (2014)
Q Consensus 1195 ~~Ls~~El~~~L~----~~~~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eE 1270 (2014)
+.|+.+|++++|. ...+.+.|+.|..+||.+.+|+|+++||..++..+ .+++.+|+.+|.|++|+|+..|
T Consensus 72 g~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------~~Wr~vF~~~D~D~SG~I~~sE 145 (221)
T KOG0037|consen 72 GRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI------NQWRNVFRTYDRDRSGTIDSSE 145 (221)
T ss_pred ccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH------HHHHHHHHhcccCCCCcccHHH
Confidence 7999999999874 34578999999999999999999999999999877 5899999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccc
Q psy5584 1271 LAEMLRSLVEMARTTSLTDSQVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEV 1350 (2014)
Q Consensus 1271 F~~~l~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~ 1350 (2014)
|..+|..
T Consensus 146 L~~Al~~------------------------------------------------------------------------- 152 (221)
T KOG0037|consen 146 LRQALTQ------------------------------------------------------------------------- 152 (221)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 9998865
Q ss_pred cccccccHHHHHHHhCCCChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCee--eHH
Q psy5584 1351 VMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVI--DKG 1428 (2014)
Q Consensus 1351 ~~~g~ls~~Ef~~~Lg~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~I--s~e 1428 (2014)
+|..++....+.+++.+|+-++|.|.|++|+.++..+. .+.++|+.+|++.+|.| +.+
T Consensus 153 --------------~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~------~lt~~Fr~~D~~q~G~i~~~y~ 212 (221)
T KOG0037|consen 153 --------------LGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ------RLTEAFRRRDTAQQGSITISYD 212 (221)
T ss_pred --------------cCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH------HHHHHHHHhccccceeEEEeHH
Confidence 67888999999999999988899999999999999884 48999999999999976 677
Q ss_pred HHHHHH
Q psy5584 1429 ELAEML 1434 (2014)
Q Consensus 1429 Ef~~~L 1434 (2014)
+|..+.
T Consensus 213 dfl~~t 218 (221)
T KOG0037|consen 213 DFLQMT 218 (221)
T ss_pred HHHHHh
Confidence 776654
No 96
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.37 E-value=9e-12 Score=157.22 Aligned_cols=183 Identities=11% Similarity=0.177 Sum_probs=115.0
Q ss_pred CcccccccCCCCC--CCeEEEEEEec-------------CCccHHHHhhhccCCCCCCCCCcEEEEECCCC-CCCCCcCC
Q psy5584 1775 AAYHSFTLTSAPH--ENFLSCHIKAQ-------------GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFG-GGNQDWYK 1838 (2014)
Q Consensus 1775 ~e~HPFTIaS~p~--~~~l~l~Ir~~-------------G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG-~~~~~~~~ 1838 (2014)
...|+|||||+|. ++.+.|.|+.+ |-.|..|.+ +.. +..|.|.+|.| .+..+...
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~-l~~--------Gd~v~v~~~~~~~F~lp~~~ 245 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNG-LTP--------GDTVPCFVRSAPSFHLPEDP 245 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHh-CCC--------CCEEEEEEeeCCccCCCCCC
Confidence 4789999999995 46677777653 667777754 333 33677766543 45443334
Q ss_pred CceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCc-ccHHHHHHHHHHHHhcCCCCcEEEEEEEcC
Q psy5584 1839 FEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSH-KHFEWFIDVLRDVEKKDVTNVLEIHIFITQ 1917 (2014)
Q Consensus 1839 ~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~-~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~ 1917 (2014)
..++||||||||||||+|+|++................++.|++++|+. .++. |.++|+++++. ....+++..+++
T Consensus 246 ~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~l-y~~El~~~~~~--~~~~~~~~a~SR 322 (406)
T cd06202 246 SVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDI-YKEETEEAKNK--GVLTEVYTALSR 322 (406)
T ss_pred CCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccc-hHHHHHHHHHc--CCCceEEEEEcC
Confidence 5789999999999999999998653211000001123589999999998 5655 78999988764 345567888887
Q ss_pred CCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHHHHHHHHhh
Q psy5584 1918 FFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEV 1997 (2014)
Q Consensus 1918 ~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~a~~~~ 1997 (2014)
..... . .|+.+. + +-+.+.+.+.+.. ....||+|||++|+++|++++.+.
T Consensus 323 ~~~~~---k--~yVq~~-l-------------------~~~~~~v~~~l~~-----~~~~iYvCG~~~M~~~V~~~L~~i 372 (406)
T cd06202 323 EPGKP---K--TYVQDL-L-------------------KEQAESVYDALVR-----EGGHIYVCGDVTMAEDVSQTIQRI 372 (406)
T ss_pred CCCCC---C--eehhhH-H-------------------HHhHHHHHHHHHh-----CCCEEEEeCCCchHHHHHHHHHHH
Confidence 42210 0 011000 0 0001111111111 245699999999999999998776
Q ss_pred hc
Q psy5584 1998 NK 1999 (2014)
Q Consensus 1998 ~~ 1999 (2014)
-.
T Consensus 373 ~~ 374 (406)
T cd06202 373 LA 374 (406)
T ss_pred HH
Confidence 53
No 97
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.36 E-value=4.4e-12 Score=165.64 Aligned_cols=189 Identities=13% Similarity=0.200 Sum_probs=127.4
Q ss_pred CcccCCCEEEEEecCCCCCcccccccCCCCC--CCeEEEEEEe----------cCCccHHHHhhhccCCCCCCCCCcEEE
Q psy5584 1757 FTYHSGQWVRLACTAFKNAAYHSFTLTSAPH--ENFLSCHIKA----------QGPWTWKLRNYFDPCNFNASEDQPKIR 1824 (2014)
Q Consensus 1757 ~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~--~~~l~l~Ir~----------~G~~T~~L~~~~~~~~~~~~~~~~~v~ 1824 (2014)
.++.||||+-+..| ...|+|||+|+|. ++.+.|.|+. .|..|..|.+.+..+ .++.
T Consensus 370 ~~~~~~q~l~ll~~----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~~G--------d~v~ 437 (600)
T PRK10953 370 AQLDAEQLIGLLRP----LTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRLEEE--------GEVR 437 (600)
T ss_pred CCCCHHHHHHhCCC----CCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCCCC--------CEEE
Confidence 36789999998754 4679999999994 4567776543 355677776554443 3899
Q ss_pred EECCCC-CCCCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCC-cccHHHHHHHHHHHHh
Q psy5584 1825 LEGPFG-GGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPS-HKHFEWFIDVLRDVEK 1902 (2014)
Q Consensus 1825 IdGPyG-~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~-~~~l~w~~~~L~~l~~ 1902 (2014)
|.||.| .+..+.....++||||+|||||||++++++....... .+++|+|++|+ ..++. |.++|+++.+
T Consensus 438 v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~--------~~~~LffG~R~~~~D~l-Y~~El~~~~~ 508 (600)
T PRK10953 438 VFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAP--------GKNWLFFGNPHFTEDFL-YQVEWQRYVK 508 (600)
T ss_pred EEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCCC--------CCeEEEeeccCCccchh-HHHHHHHHHH
Confidence 999886 5654434557899999999999999999988765322 47999999998 55654 8999999886
Q ss_pred cCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeC
Q psy5584 1903 KDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCG 1982 (2014)
Q Consensus 1903 ~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCG 1982 (2014)
.. ...+++...+|.... . .|+..... =+-+++.+.+ . ....||+||
T Consensus 509 ~g--~l~~l~~afSRd~~~----k--~YVQ~~l~--------------------e~~~~l~~~l-~-----~ga~~YVCG 554 (600)
T PRK10953 509 EG--LLTRIDLAWSRDQKE----K--IYVQDKLR--------------------EQGAELWRWI-N-----DGAHIYVCG 554 (600)
T ss_pred cC--CcceEEEEECCCCCC----C--CcHHHHHH--------------------HHHHHHHHHH-H-----CCcEEEEEC
Confidence 53 233466777774311 1 11111000 0012222222 1 135699999
Q ss_pred Ch-hhHHHHHHHHHhhhcC
Q psy5584 1983 PR-PLTKSIMSACEEVNKG 2000 (2014)
Q Consensus 1983 P~-~m~~~vr~a~~~~~~~ 2000 (2014)
|. .|.++|++++.+...+
T Consensus 555 ~~~~M~~~V~~~L~~i~~~ 573 (600)
T PRK10953 555 DANRMAKDVEQALLEVIAE 573 (600)
T ss_pred CCccchHHHHHHHHHHHHH
Confidence 96 6999999998876543
No 98
>PTZ00183 centrin; Provisional
Probab=99.33 E-value=2.3e-11 Score=133.81 Aligned_cols=138 Identities=20% Similarity=0.376 Sum_probs=120.4
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHHHH
Q psy5584 1213 VFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQV 1292 (2014)
Q Consensus 1213 ~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~e~ 1292 (2014)
..++.+|..+|.+++|.|+.+||..++..++...+.+.+..+|..+|.|++|.|+++||..++....
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~------------- 83 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL------------- 83 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh-------------
Confidence 3488999999999999999999999999887778889999999999999999999999998764311
Q ss_pred HHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCCChHH
Q psy5584 1293 TELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAV 1372 (2014)
Q Consensus 1293 ~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~~s~~ 1372 (2014)
.......
T Consensus 84 -------------------------------------------------------------------------~~~~~~~ 90 (158)
T PTZ00183 84 -------------------------------------------------------------------------GERDPRE 90 (158)
T ss_pred -------------------------------------------------------------------------cCCCcHH
Confidence 0011234
Q ss_pred HHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHH
Q psy5584 1373 FVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1436 (2014)
Q Consensus 1373 ~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~ 1436 (2014)
.++.+|..+|.+++|.|+.+||..++.......+.+++..+|..+|.|++|.|+.+||..++..
T Consensus 91 ~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 91 EILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 5788999999999999999999999988777788889999999999999999999999998863
No 99
>KOG0028|consensus
Probab=99.31 E-value=2.7e-11 Score=124.91 Aligned_cols=138 Identities=17% Similarity=0.334 Sum_probs=127.2
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHHHH
Q psy5584 1213 VFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQV 1292 (2014)
Q Consensus 1213 ~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~e~ 1292 (2014)
..++..|..||.+++|+|+.+||..++..++.....+++..+...+|.++.|.|++++|...+...
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k-------------- 98 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVK-------------- 98 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHH--------------
Confidence 568999999999999999999999999999999999999999999999999999999999987541
Q ss_pred HHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCCChHH
Q psy5584 1293 TELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAV 1372 (2014)
Q Consensus 1293 ~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~~s~~ 1372 (2014)
+|...+.+
T Consensus 99 ------------------------------------------------------------------------~~e~dt~e 106 (172)
T KOG0028|consen 99 ------------------------------------------------------------------------LGERDTKE 106 (172)
T ss_pred ------------------------------------------------------------------------HhccCcHH
Confidence 33444778
Q ss_pred HHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHH
Q psy5584 1373 FVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1436 (2014)
Q Consensus 1373 ~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~ 1436 (2014)
++...|+.+|.|++|+||+.+|+..+..+....+++++..+...+|.|++|-|+.+||-.+++.
T Consensus 107 Ei~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 107 EIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999999999998863
No 100
>PTZ00184 calmodulin; Provisional
Probab=99.30 E-value=6e-11 Score=129.00 Aligned_cols=137 Identities=25% Similarity=0.400 Sum_probs=117.3
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHHHH
Q psy5584 1213 VFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQV 1292 (2014)
Q Consensus 1213 ~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~e~ 1292 (2014)
+.++..|..+|.+++|.|+++||..++..++.....+.++.+|+.+|.+++|.|+++||..++.....
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~------------ 78 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMK------------ 78 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhcc------------
Confidence 35789999999999999999999999988887788899999999999999999999999988754210
Q ss_pred HHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCCChHH
Q psy5584 1293 TELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAV 1372 (2014)
Q Consensus 1293 ~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~~s~~ 1372 (2014)
......
T Consensus 79 --------------------------------------------------------------------------~~~~~~ 84 (149)
T PTZ00184 79 --------------------------------------------------------------------------DTDSEE 84 (149)
T ss_pred --------------------------------------------------------------------------CCcHHH
Confidence 001223
Q ss_pred HHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHH
Q psy5584 1373 FVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLR 1435 (2014)
Q Consensus 1373 ~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~ 1435 (2014)
.+..+|..+|.+++|.|+.+||..++.......+.+.+..+|+.+|.+++|.|+.+||..++.
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 467889999999999999999999998876667788899999999999999999999988764
No 101
>KOG0031|consensus
Probab=99.30 E-value=4.6e-11 Score=122.03 Aligned_cols=133 Identities=29% Similarity=0.514 Sum_probs=115.6
Q ss_pred HHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5584 1249 DKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFREA 1328 (2014)
Q Consensus 1249 eel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~ 1328 (2014)
++++++|.++|.|+||.|+.++++.++.++
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSl-------------------------------------------------- 61 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASL-------------------------------------------------- 61 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHc--------------------------------------------------
Confidence 578899999999999999999999998763
Q ss_pred HHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCCChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcC-CcH
Q psy5584 1329 YALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRG-HTE 1407 (2014)
Q Consensus 1329 f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~-~~~ 1407 (2014)
|-..++++++.|+.+ .+|.|+|.-|+.++.....+ .++
T Consensus 62 -------------------------------------Gk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtdpe 100 (171)
T KOG0031|consen 62 -------------------------------------GKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTDPE 100 (171)
T ss_pred -------------------------------------CCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCCHH
Confidence 334556667777665 47899999999999876665 677
Q ss_pred HHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy5584 1408 DKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRD 1481 (2014)
Q Consensus 1408 e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~ 1481 (2014)
+.+..+|++||.+++|.|..+.|+++|...+. +++++|+++ |++.+-.|..|.|+|.+|..+|..
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gD-----r~~~eEV~~----m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGD-----RFTDEEVDE----MYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcc-----cCCHHHHHH----HHHhCCcccCCceeHHHHHHHHHc
Confidence 88999999999999999999999999999887 999999766 888899999999999999999983
No 102
>KOG0044|consensus
Probab=99.29 E-value=1.4e-11 Score=135.76 Aligned_cols=135 Identities=23% Similarity=0.387 Sum_probs=113.3
Q ss_pred ccccccccCHHHHHhhhCCCC----ChHHHHHHHHhhccCCCCcccHHHHHhhhhhccCCCHHHHHHHHHhhccCCCCcc
Q psy5584 47 EVVMRTSLSRAEFASALGMKS----DAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGV 122 (2014)
Q Consensus 47 ~v~ps~~i~~~EF~~al~~rf----~~s~~~~~f~~fD~d~~g~I~f~Efi~~~~~l~~~~~~d~l~~~f~~~D~d~~G~ 122 (2014)
+-+|+|.++.++|..+++.-| ...+++++|+.||+|+||.|+|+|||.+++.+.+|+..+++.|+|++||.|++|+
T Consensus 37 ~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~ 116 (193)
T KOG0044|consen 37 NECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGY 116 (193)
T ss_pred ccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCce
Confidence 478999999999999887444 3478999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhcC-CCCCC-CCchhHHHHHHHhhhhcCCCCcchhhhhhcccccc
Q psy5584 123 IDKGELAEMLRSLVEMART-SFPSG-GAATTVVKIVLRGYYSYGNSLDNIDLYIGGMLESH 181 (2014)
Q Consensus 123 Is~~El~~~L~dL~niqrg-glp~~-~~a~~i~~~~l~~~~~~~~~~~~idl~~gg~~E~~ 181 (2014)
|+++||.++++.+++|++. ..|+. ..+...++.++++|..-....--++-++.|....+
T Consensus 117 It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~ 177 (193)
T KOG0044|consen 117 ITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADP 177 (193)
T ss_pred EcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCH
Confidence 9999999999999999998 77753 56666899999999853322223444555554443
No 103
>KOG0037|consensus
Probab=99.29 E-value=9.3e-11 Score=127.86 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=142.1
Q ss_pred cHHHHHHHHHhhcCCCCcceeHHHHHHHHHHh-cCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCH
Q psy5584 1211 DAVFVRMMFNIVDKDGDGRISFQEFLDTVVLF-SRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTD 1289 (2014)
Q Consensus 1211 ~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l-~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~ 1289 (2014)
...++...|..+|+|++|.|+-+|+..+|... ......+.++.|..+||.|.+|+|.++||+...+.+.
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~---------- 124 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN---------- 124 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH----------
Confidence 45678899999999999999999999999853 4567889999999999999999999999999876532
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCCC
Q psy5584 1290 SQVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKS 1369 (2014)
Q Consensus 1290 ~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~~ 1369 (2014)
T Consensus 125 -------------------------------------------------------------------------------- 124 (221)
T KOG0037|consen 125 -------------------------------------------------------------------------------- 124 (221)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHH
Q psy5584 1370 DAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDS 1449 (2014)
Q Consensus 1370 s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~ 1449 (2014)
.++.+|..+|+|++|.|+..|+.+++..+.-..+.+-...+++.||..++|.|..++|.+.+..+..
T Consensus 125 ---~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~---------- 191 (221)
T KOG0037|consen 125 ---QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR---------- 191 (221)
T ss_pred ---HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH----------
Confidence 2788999999999999999999999999988899999999999999999999999999998876543
Q ss_pred HHHHHHHHHHHHcCCCCCC--cccHHHHHHHHH
Q psy5584 1450 QVTELIDGMFQDAGLDSKD--FLTYQDFKLMMR 1480 (2014)
Q Consensus 1450 e~~~li~~if~~~D~d~dG--~Is~eEF~~~l~ 1480 (2014)
.-+.|++.|.+.+| .|+|++|+.+..
T Consensus 192 -----lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 192 -----LTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred -----HHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 23378899999888 688999998753
No 104
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.23 E-value=2.8e-11 Score=124.41 Aligned_cols=109 Identities=22% Similarity=0.410 Sum_probs=71.8
Q ss_pred EEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCC
Q psy5584 1844 MVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFD 1923 (2014)
Q Consensus 1844 lIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d 1923 (2014)
||||||||||++|++++++... .. ++|+|+|++|+.+++. +.++|.++++.... +++++.+......
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~-~~-------~~v~l~~~~r~~~~~~-~~~~l~~~~~~~~~---~~~~~~~~~~~~~- 67 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN-DN-------RKVTLFYGARTPEDLL-FRDELEALAQEYPN---RFHVVYVSSPDDG- 67 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT-CT-------SEEEEEEEESSGGGST-THHHHHHHHHHSTT---CEEEEEETTTTSS-
T ss_pred CeecceeHHHHHHHHHHHHHhC-CC-------CCEEEEEEEccccccc-chhHHHHHHhhccc---ccccccccccccc-
Confidence 7999999999999999999873 22 5999999999999986 78999999876533 3333332211100
Q ss_pred cchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChhhHHHHHH
Q psy5584 1924 LRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMS 1992 (2014)
Q Consensus 1924 ~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~m~~~vr~ 1992 (2014)
+.+ +.||.+ ..+++.+.....+..+..||+|||++|+++|++
T Consensus 68 ---------------------~~~-----~~g~v~-~~~~~~~~~~~~~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 68 ---------------------WDG-----FKGRVT-DLLLEDLLPEKIDPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp ---------------------TTS-----EESSHH-HHHHHHHHHHHHCTTTEEEEEEEEHHHHHHHHH
T ss_pred ---------------------cCC-----ceeehh-HHHHHhhcccccCCCCCEEEEECCHHHHHHhcC
Confidence 011 113322 122233333111224778999999999999975
No 105
>KOG0030|consensus
Probab=99.16 E-value=5e-10 Score=112.85 Aligned_cols=106 Identities=25% Similarity=0.357 Sum_probs=80.8
Q ss_pred hCCCChHHHHHHHHHHHccC--CCCceeHHHHHHHHHHHhcC---CcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHH
Q psy5584 1365 LGMKSDAVFVRMMFNIVDKD--GDGRISFQEFLDTVVLFSRG---HTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVE 1439 (2014)
Q Consensus 1365 Lg~~~s~~~l~~lf~~~D~D--gdG~Isf~EFl~~l~~~~~~---~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~ 1439 (2014)
+|.++++.++.+.....+++ +-..|+|++|+-++..+.+. .+-++.-.-.+.||++++|.|...|++++|..+|+
T Consensus 40 lG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGe 119 (152)
T KOG0030|consen 40 LGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGE 119 (152)
T ss_pred hcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHh
Confidence 45555666666666555554 34578888887777665543 34456667788999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy5584 1440 MARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMR 1480 (2014)
Q Consensus 1440 ~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~ 1480 (2014)
+++++|+++++. --.|.+|.|.|++|++.+.
T Consensus 120 -----kl~eeEVe~Lla-----g~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 120 -----KLTEEEVEELLA-----GQEDSNGCINYEAFVKHIM 150 (152)
T ss_pred -----hccHHHHHHHHc-----cccccCCcCcHHHHHHHHh
Confidence 999999988663 2346789999999998775
No 106
>KOG3378|consensus
Probab=99.15 E-value=3.4e-10 Score=124.99 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=94.2
Q ss_pred heeeeeEeEEEEEEEcCCCEEEEEEecCC----CCcccCCCEEEEEe--cCCCC--CcccccccCCCCCCCeEEEEEEec
Q psy5584 1727 LRTKYMALDILETELLPSDVIKIRFYRPP----NFTYHSGQWVRLAC--TAFKN--AAYHSFTLTSAPHENFLSCHIKAQ 1798 (2014)
Q Consensus 1727 ~~r~~~~~~v~~v~~l~~~v~~l~~~~p~----~~~~~pGQyv~L~~--p~~~~--~e~HPFTIaS~p~~~~l~l~Ir~~ 1798 (2014)
.+.....+.|+..+..++||..+.+.+-. .....|||||.+.. |..+. ..-+.+|..++...+.+++.||..
T Consensus 145 ~W~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~ 224 (385)
T KOG3378|consen 145 GWDGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRV 224 (385)
T ss_pred CCCCccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeeh
Confidence 45566788999999999999999997532 34589999999864 33322 122335555555678899999986
Q ss_pred --CCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCC---cCCCceEEEEEeccchhhHHHHHHHHHhcc
Q psy5584 1799 --GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQD---WYKFEVAVMVGGGIGVTPYASILNDLVFGT 1865 (2014)
Q Consensus 1799 --G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~---~~~~~~vvlIaGGiGITP~lsiL~~l~~~~ 1865 (2014)
|-.+.-+++.++.+ ..+-+.-|-|.+... ......+|+.||||||||.++|+...+...
T Consensus 225 A~G~VS~~~H~~~KVG--------D~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~ 288 (385)
T KOG3378|consen 225 AGGVVSNFVHDNLKVG--------DIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLCY 288 (385)
T ss_pred hchhhHHHhhcccccc--------ceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhcC
Confidence 44555566555444 378899999998632 223468999999999999999999877653
No 107
>KOG0038|consensus
Probab=99.10 E-value=9.3e-10 Score=110.68 Aligned_cols=113 Identities=26% Similarity=0.464 Sum_probs=100.4
Q ss_pred HHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCc-HHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHH
Q psy5584 1372 VFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHT-EDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQ 1450 (2014)
Q Consensus 1372 ~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~-~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e 1450 (2014)
.+-+++...+..||.|.++|++|++++..++...+ +-++.-+|+.||-|+|++|..+++...+.++.. ..|++++
T Consensus 71 pfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr----~eLs~eE 146 (189)
T KOG0038|consen 71 PFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR----DELSDEE 146 (189)
T ss_pred hHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh----ccCCHHH
Confidence 45678888899999999999999999988876544 347888999999999999999999999998864 2899999
Q ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCcccchh
Q psy5584 1451 VTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYKGDFVA 1488 (2014)
Q Consensus 1451 ~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~~~l~~ 1488 (2014)
++.+++.+++++|.|+||+|++.||..++.+.|+.+..
T Consensus 147 v~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFlsT 184 (189)
T KOG0038|consen 147 VELICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLST 184 (189)
T ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHhh
Confidence 99999999999999999999999999999999876644
No 108
>KOG0036|consensus
Probab=99.08 E-value=1e-09 Score=128.73 Aligned_cols=102 Identities=25% Similarity=0.411 Sum_probs=91.5
Q ss_pred ChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCH
Q psy5584 1369 SDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTD 1448 (2014)
Q Consensus 1369 ~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~ 1448 (2014)
+..+....+|+..|.|.||.++|+||...+.. .+.++..+|+..|.++||.|+.+|+.+.++.++. ++++
T Consensus 48 ~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi-----~l~d 117 (463)
T KOG0036|consen 48 PNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGI-----QLSD 117 (463)
T ss_pred CchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCC-----ccCH
Confidence 45566888999999999999999999998864 3567999999999999999999999999999887 8999
Q ss_pred HHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCcc
Q psy5584 1449 SQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYKG 1484 (2014)
Q Consensus 1449 ~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~~ 1484 (2014)
++++. +|+.+|+++++.|+++||.+++.-+|.
T Consensus 118 e~~~k----~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 118 EKAAK----FFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred HHHHH----HHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 98766 778899999999999999999998883
No 109
>KOG0036|consensus
Probab=99.06 E-value=3.8e-09 Score=123.99 Aligned_cols=169 Identities=18% Similarity=0.305 Sum_probs=140.3
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCC-CCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHH
Q psy5584 1212 AVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRG-HTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDS 1290 (2014)
Q Consensus 1212 ~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~-~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~ 1290 (2014)
+..++.+|..+|.+++|.++..++...+..+... ...+-.+.+|..+|.|.||.++|+||++.+..
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------------- 79 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------------- 79 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-------------
Confidence 4568999999999999999999999999998776 56677889999999999999999999998754
Q ss_pred HHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCCCh
Q psy5584 1291 QVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSD 1370 (2014)
Q Consensus 1291 e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~~s 1370 (2014)
.
T Consensus 80 -------------------------------------------------------------------------------~ 80 (463)
T KOG0036|consen 80 -------------------------------------------------------------------------------K 80 (463)
T ss_pred -------------------------------------------------------------------------------h
Confidence 1
Q ss_pred HHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHH
Q psy5584 1371 AVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQ 1450 (2014)
Q Consensus 1371 ~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e 1450 (2014)
+..+.++|..+|.++||.|+.+|....+..+....+++++..+|+..|+|+++.|+.+|++..+. -.+++.
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l---------l~p~s~ 151 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL---------LYPESD 151 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh---------cCChhH
Confidence 23477899999999999999999999999999999999999999999999999999999999876 223445
Q ss_pred HHHHHHHH--HHHcCCCCCCcccHHHHHHHHHhC
Q psy5584 1451 VTELIDGM--FQDAGLDSKDFLTYQDFKLMMRDY 1482 (2014)
Q Consensus 1451 ~~~li~~i--f~~~D~d~dG~Is~eEF~~~l~~~ 1482 (2014)
++++.+.. +..+|...+..|. ++|....+..
T Consensus 152 i~di~~~W~h~~~idigE~~~iP-dg~s~~e~~~ 184 (463)
T KOG0036|consen 152 LEDIYDFWRHVLLIDIGEDAVLP-DGDSKLENDS 184 (463)
T ss_pred HHHHHHhhhhheEEEccccccCC-cchHHHHhcc
Confidence 55543221 1136888888888 7887766543
No 110
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.04 E-value=4.7e-10 Score=118.40 Aligned_cols=98 Identities=23% Similarity=0.435 Sum_probs=76.9
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccccccccccccCCCCCCCcceeeeccccchhHHHHHHH
Q psy5584 1580 QYIPLDSHIQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGITFWLFQTITGITGVLLFV 1659 (2014)
Q Consensus 1580 ~~i~~d~~~~~Hr~ig~~~~~~~~lH~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~g~tGii~~~ 1659 (2014)
+++|+|+.+.+|||+|+++++++++|+++|.++++..+..... .............+|+++++
T Consensus 26 ~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~G~~a~~ 88 (125)
T PF01794_consen 26 TGISFDRLLRFHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQ-----------------EWFNAWLTGPYNLTGIIALL 88 (125)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-----------------HHHHHHHHhhHHHHHHHHHH
Confidence 6799999999999999999999999999999887653211000 00011122334468999999
Q ss_pred HHHHHHHhhhHHHh-hhhhhHHHHHHHHHHHHHHHH
Q psy5584 1660 IMVLIFVFAHPTIR-KKAYNWFWLAHSLYVFLFALM 1694 (2014)
Q Consensus 1660 ~l~im~v~S~~~iR-r~~Ye~F~~~H~l~~~~~vl~ 1694 (2014)
++++|+++|.+++| |+.||.|+++|++++++++++
T Consensus 89 ~l~~l~~tS~~~~R~r~~ye~f~~~H~~~~~~~~l~ 124 (125)
T PF01794_consen 89 LLLILAVTSFPWIRRRRNYEIFYYLHILFYIAFLLA 124 (125)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 889999999999987776653
No 111
>KOG0034|consensus
Probab=99.03 E-value=3.8e-09 Score=116.95 Aligned_cols=84 Identities=31% Similarity=0.563 Sum_probs=73.7
Q ss_pred cCcCHHHHHHHhCCCCcHHHHHHHHHhhcCCCCcc-eeHHHHHHHHHHhcCCCCHH-HHHHHHHhccCCCCCcccHHHHH
Q psy5584 1195 TSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGR-ISFQEFLDTVVLFSRGHTED-KLRIIFDMCDNDRNGVIDKGELA 1272 (2014)
Q Consensus 1195 ~~Ls~~El~~~L~~~~~~~~l~~lF~~~D~dgdG~-Is~~EF~~~l~~l~~~~~ee-el~~lF~~~D~D~dG~Is~eEF~ 1272 (2014)
+.|+++||..++.+..+ ....+++..+|.+++|. |+|+||...+..+....+.+ +++-+|++||.|++|.|+.+|+.
T Consensus 49 g~lt~eef~~i~~~~~N-p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~ 127 (187)
T KOG0034|consen 49 GYLTKEEFLSIPELALN-PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELK 127 (187)
T ss_pred CccCHHHHHHHHHHhcC-cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence 89999999998844433 35788999999999999 99999999999987766665 99999999999999999999999
Q ss_pred HHHHHHH
Q psy5584 1273 EMLRSLV 1279 (2014)
Q Consensus 1273 ~~l~~~~ 1279 (2014)
.++..+.
T Consensus 128 ~iv~~~~ 134 (187)
T KOG0034|consen 128 QILRMMV 134 (187)
T ss_pred HHHHHHH
Confidence 9998754
No 112
>KOG4251|consensus
Probab=99.02 E-value=1.9e-09 Score=117.03 Aligned_cols=226 Identities=16% Similarity=0.236 Sum_probs=149.4
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcC---CCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCC
Q psy5584 1212 AVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSR---GHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLT 1288 (2014)
Q Consensus 1212 ~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~---~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s 1288 (2014)
...+..||...|.|.||+|+..|+.+.+..-.. ....++.+..|+..|.|+||.|+++||..-+.... .-+
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlask------ghs 173 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASK------GHS 173 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhc------Ccc
Confidence 456889999999999999999999998765321 12234567789999999999999999988776532 223
Q ss_pred HHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCC
Q psy5584 1289 DSQVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMK 1368 (2014)
Q Consensus 1289 ~~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~ 1368 (2014)
+.+..+.+.. +. +......-+++.+.......+.+. ...+-.++.+||...|...
T Consensus 174 ekevadairl--ne-----------elkVDeEtqevlenlkdRwyqaDs------------ppadlllteeEflsFLHPE 228 (362)
T KOG4251|consen 174 EKEVADAIRL--NE-----------ELKVDEETQEVLENLKDRWYQADS------------PPADLLLTEEEFLSFLHPE 228 (362)
T ss_pred hHHHHHHhhc--cC-----------cccccHHHHHHHHhhhhhhccccC------------chhhhhhhHHHHHHHcChH
Confidence 3333332221 00 000111112222222222221111 0245678889999988654
Q ss_pred Ch----HHHHHHHHHHHccCCCCceeHHHHHHHHHHHh---cC------CcHHHHHHHHhhhcCCCCCeeeHHHHHHHHH
Q psy5584 1369 SD----AVFVRMMFNIVDKDGDGRISFQEFLDTVVLFS---RG------HTEDKLRIIFDMCDNDRNGVIDKGELAEMLR 1435 (2014)
Q Consensus 1369 ~s----~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~---~~------~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~ 1435 (2014)
.+ ...++.++..+|+|+|..+|-.||+......- .+ -.++..+..=..+|.|+||.++.+|+...+.
T Consensus 229 hSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 229 HSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred hhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 43 45678889999999999999999987643211 11 1123455556678999999999999999876
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q psy5584 1436 SLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKL 1477 (2014)
Q Consensus 1436 ~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~ 1477 (2014)
-+.. .+.-.+ +..+|...|.|+|.+++.+|.++
T Consensus 309 P~n~-----~~alne----~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 309 PQNF-----RLALNE----VNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred chhh-----hhhHHH----HHHHHhhhccCCCcccCHHHHHH
Confidence 4433 222233 45578889999999999999875
No 113
>KOG2643|consensus
Probab=98.98 E-value=2.6e-09 Score=126.14 Aligned_cols=227 Identities=21% Similarity=0.297 Sum_probs=128.2
Q ss_pred hcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhc-----CCCCC-----HHH
Q psy5584 1222 VDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMAR-----TTSLT-----DSQ 1291 (2014)
Q Consensus 1222 ~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~-----~~~~s-----~~e 1291 (2014)
+|.+.+|-|||.|+.-++..+. .++..++..|+|||.||||.|+.+||.....-...... ....+ ..+
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlLS--~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~ 285 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLLS--IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVE 285 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHHc--cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhh
Confidence 5667889999999999998875 56778999999999999999999999988754321100 00000 111
Q ss_pred HHHHHHhhhcCh---HHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccccccHHHHHHHh--
Q psy5584 1292 VTELIDGMFQSP---RELMLAKA-ETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASAL-- 1365 (2014)
Q Consensus 1292 ~~~~i~~~~~~~---~~~~~~~~-~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~L-- 1365 (2014)
+...+...+-.. ..+...+. .-.+.+ .+++.+--|..++ .. ..|.|+..+|++.+
T Consensus 286 ~nsaL~~yFFG~rg~~kLs~deF~~F~e~L---q~Eil~lEF~~~~----------~~------~~g~Ise~DFA~~lL~ 346 (489)
T KOG2643|consen 286 VNSALLTYFFGKRGNGKLSIDEFLKFQENL---QEEILELEFERFD----------KG------DSGAISEVDFAELLLA 346 (489)
T ss_pred hhhhHHHHhhccCCCccccHHHHHHHHHHH---HHHHHHHHHHHhC----------cc------cccccCHHHHHHHHHH
Confidence 111111111000 00000000 000001 1111111111111 11 12477777787755
Q ss_pred --CCCC--hHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhh
Q psy5584 1366 --GMKS--DAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMA 1441 (2014)
Q Consensus 1366 --g~~~--s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~ 1441 (2014)
+.+. ....++++-+.++.+ +--||++||..+..-+.+-..-+..-.+|.+ ..+.|+..+|+++.....
T Consensus 347 ~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~----Ag~~i~~~~f~raa~~vt--- 418 (489)
T KOG2643|consen 347 YAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALRFYHM----AGASIDEKTFQRAAKVVT--- 418 (489)
T ss_pred HcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHHHHHH----cCCCCCHHHHHHHHHHhc---
Confidence 2222 223456666666665 3348888887777655443322333333332 345678888888776432
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy5584 1442 RTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDY 1482 (2014)
Q Consensus 1442 ~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~ 1482 (2014)
+. .|++. +++.+|..+|.|+||.||++||+.+|++.
T Consensus 419 Gv-eLSdh----VvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 419 GV-ELSDH----VVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred Cc-ccccc----eeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 22 55554 46668999999999999999999999863
No 114
>KOG4223|consensus
Probab=98.92 E-value=7.7e-09 Score=119.21 Aligned_cols=185 Identities=21% Similarity=0.309 Sum_probs=133.2
Q ss_pred cCcCHHHHHHHhCC---CCcHHHHHHHHHhhcCCCCcceeHHHHHHHHHHhc--------CCCCH------HHHHHHHHh
Q psy5584 1195 TSLSRAEFASALGM---KSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFS--------RGHTE------DKLRIIFDM 1257 (2014)
Q Consensus 1195 ~~Ls~~El~~~L~~---~~~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~--------~~~~e------eel~~lF~~ 1257 (2014)
+.++..|+..-... +.-.....+-+...|+|.||.|+++|+........ ....+ ..-+..|+.
T Consensus 92 gfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~ 171 (325)
T KOG4223|consen 92 GFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKA 171 (325)
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhh
Confidence 89999999974432 23455677788999999999999999999887521 11111 113457999
Q ss_pred ccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy5584 1258 CDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKP 1337 (2014)
Q Consensus 1258 ~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~ 1337 (2014)
.|.|+||.++.+||..++...- -..+..+ .+++.+
T Consensus 172 AD~d~dg~lt~EEF~aFLHPEe---------~p~M~~i------------------------Vi~Etl------------ 206 (325)
T KOG4223|consen 172 ADQDGDGSLTLEEFTAFLHPEE---------HPHMKDI------------------------VIAETL------------ 206 (325)
T ss_pred cccCCCCcccHHHHHhccChhh---------cchHHHH------------------------HHHHHH------------
Confidence 9999999999999999986521 0111111 111111
Q ss_pred CCccccCCCcccccccccccHHHHHHHh----C----CCChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHH
Q psy5584 1338 GEKRRRDDETGEVVMRTSLSRAEFASAL----G----MKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDK 1409 (2014)
Q Consensus 1338 ~~~~~d~d~~G~~~~~g~ls~~Ef~~~L----g----~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~ 1409 (2014)
.+.|++| +|.|+.+||..-+ + ......+-++++...|+|+||+++-+|.+.++..-.....+.+
T Consensus 207 ----~d~Dkn~----DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~E 278 (325)
T KOG4223|consen 207 ----EDIDKNG----DGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAE 278 (325)
T ss_pred ----hhcccCC----CCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHH
Confidence 1234444 5599999998766 2 1112345678999999999999999999998876655566788
Q ss_pred HHHHHhhhcCCCCCeeeHHHHHH
Q psy5584 1410 LRIIFDMCDNDRNGVIDKGELAE 1432 (2014)
Q Consensus 1410 l~~~F~~~D~DgdG~Is~eEf~~ 1432 (2014)
.+.++...|.|+||++|++|+..
T Consensus 279 A~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 279 ARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHhhhhccCccccccHHHHhh
Confidence 99999999999999999999865
No 115
>KOG2562|consensus
Probab=98.91 E-value=3.2e-08 Score=118.31 Aligned_cols=253 Identities=15% Similarity=0.198 Sum_probs=171.5
Q ss_pred HHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCC-CCCHHHHH
Q psy5584 1215 VRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTT-SLTDSQVT 1293 (2014)
Q Consensus 1215 l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~-~~s~~e~~ 1293 (2014)
...+|..+|.|..|.|+...|...+... .......+.+++..++..+.|++...+|...+..+.....-. .....+..
T Consensus 141 s~~~f~k~~~d~~g~it~~~Fi~~~~~~-~~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~ 219 (493)
T KOG2562|consen 141 SASTFRKIDGDDTGHITRDKFINYWMRG-LMLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQ 219 (493)
T ss_pred chhhhhhhccCcCCceeHHHHHHHHHhh-hhHHHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHH
Confidence 4678999999999999999999877652 234567788899999999999999999999988765433200 00111111
Q ss_pred H-----HHHhhh-------cC---hHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCccccc
Q psy5584 1294 E-----LIDGMF-------QS---PRE-------LMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVV 1351 (2014)
Q Consensus 1294 ~-----~i~~~~-------~~---~~~-------~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~ 1351 (2014)
+ ++.+++ .. ... ........++......+.+--..|.......+. .|.|.
T Consensus 220 ~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFwe---LD~Dh----- 291 (493)
T KOG2562|consen 220 ERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWE---LDTDH----- 291 (493)
T ss_pred HHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhh---hcccc-----
Confidence 1 122221 11 000 011122223334444444433333333222222 23343
Q ss_pred ccccccHHHHHHHhCCCChHHHHHHHHHHHcc----CCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeH
Q psy5584 1352 MRTSLSRAEFASALGMKSDAVFVRMMFNIVDK----DGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDK 1427 (2014)
Q Consensus 1352 ~~g~ls~~Ef~~~Lg~~~s~~~l~~lf~~~D~----DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~ 1427 (2014)
++.|++++++..-....+...++++|+.+-+ -.+|+++|++|+.++..+....+...++-.|+.+|.|++|.|+.
T Consensus 292 -d~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~ 370 (493)
T KOG2562|consen 292 -DGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTL 370 (493)
T ss_pred -ccccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccH
Confidence 4599999999988888899999999994443 45899999999999999988888888999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q psy5584 1428 GELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKL 1477 (2014)
Q Consensus 1428 eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~ 1477 (2014)
.|++.+..............+--+++++.+|+..+.+.+.++|+++||+.
T Consensus 371 ~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 371 NELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 99988776543211100111222356677888999988999999999998
No 116
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=98.89 E-value=3.7e-09 Score=106.72 Aligned_cols=92 Identities=24% Similarity=0.464 Sum_probs=76.0
Q ss_pred EeEEEEEEEcCCCEEEEEEecCC---CCcccCCCEEEEEecCCCCCcccccccCCCCCC-CeEEEEEEec--CCccHHHH
Q psy5584 1733 ALDILETELLPSDVIKIRFYRPP---NFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQ--GPWTWKLR 1806 (2014)
Q Consensus 1733 ~~~v~~v~~l~~~v~~l~~~~p~---~~~~~pGQyv~L~~p~~~~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~ 1806 (2014)
+++|++++.+++++..++|+.|. .+.|.||||+.|.++..+...+|||||+|.|.+ +.++|+||.. |..|+.|.
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHHH
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHHH
Confidence 36789999999999999998873 366999999999999555567899999999965 5899999999 88899996
Q ss_pred hhhccCCCCCCCCCcEEEEECCCCCCC
Q psy5584 1807 NYFDPCNFNASEDQPKIRLEGPFGGGN 1833 (2014)
Q Consensus 1807 ~~~~~~~~~~~~~~~~v~IdGPyG~~~ 1833 (2014)
+ ++.+ ..+.|.||+|.+.
T Consensus 81 ~-l~~G--------d~v~i~gP~G~f~ 98 (99)
T PF00970_consen 81 Q-LKPG--------DEVEIRGPYGNFT 98 (99)
T ss_dssp T-SCTT--------SEEEEEEEESSEE
T ss_pred h-CCCC--------CEEEEEEcccccC
Confidence 6 4444 3899999999863
No 117
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.82 E-value=2.3e-08 Score=133.01 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=94.2
Q ss_pred eEeEEEEEEEcCCCEEEEEEecCCC-CcccCCCEEEEEecCCC--C-CcccccccCCCCC-CCeEEEEEEecCCccHHHH
Q psy5584 1732 MALDILETELLPSDVIKIRFYRPPN-FTYHSGQWVRLACTAFK--N-AAYHSFTLTSAPH-ENFLSCHIKAQGPWTWKLR 1806 (2014)
Q Consensus 1732 ~~~~v~~v~~l~~~v~~l~~~~p~~-~~~~pGQyv~L~~p~~~--~-~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~L~ 1806 (2014)
...+|++.+.++++++.++++.|.. -.++||||+.|++++.+ . .+..||||++.+. .+.++|+++.+|..|+.|.
T Consensus 791 l~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvVGkgT~~Ls 870 (1028)
T PRK06567 791 LTSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEVGKSTSLCK 870 (1028)
T ss_pred hceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEEChHHHHHh
Confidence 3467889999999999999998863 36899999999986533 2 2456899999764 5789999999999999997
Q ss_pred hhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHHHh
Q psy5584 1807 NYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVF 1863 (2014)
Q Consensus 1807 ~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~ 1863 (2014)
++ + ++..+.|-||+|.++.. ..++++|+||||+|++| +++.|..
T Consensus 871 ~l-~--------~Gd~v~v~GPLG~pF~i-~~~k~vLLVgGGVGiAp---Lak~Lk~ 914 (1028)
T PRK06567 871 TL-S--------ENEKVVLMGPTGSPLEI-PQNKKIVIVDFEVGNIG---LLKVLKE 914 (1028)
T ss_pred cC-C--------CCCEEEEEcccCCCCCC-CCCCeEEEEEccccHHH---HHHHHHH
Confidence 65 2 33479999999998753 34579999999999997 4455543
No 118
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.80 E-value=9.7e-09 Score=95.34 Aligned_cols=66 Identities=29% Similarity=0.543 Sum_probs=60.1
Q ss_pred HHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q psy5584 1409 KLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMM 1479 (2014)
Q Consensus 1409 ~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l 1479 (2014)
+++.+|+.+|+|++|+|+.+||+.+++.++. ..+++++++.+..+|+.+|.|+||.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~-----~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGR-----DMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTS-----HSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999997654 55688888999999999999999999999999875
No 119
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=98.75 E-value=9.6e-08 Score=123.26 Aligned_cols=176 Identities=11% Similarity=0.186 Sum_probs=117.4
Q ss_pred CcccccccCCCCC--CCeEEEEEEec----------CCccHHHHhhhccCCCCCCCCCcEEEEECCCC-CCCCCcCCCce
Q psy5584 1775 AAYHSFTLTSAPH--ENFLSCHIKAQ----------GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFG-GGNQDWYKFEV 1841 (2014)
Q Consensus 1775 ~e~HPFTIaS~p~--~~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG-~~~~~~~~~~~ 1841 (2014)
...|=|||+|+|. .+.+.++|..+ |..|.-|.++...+. .+.|...-+ .+..+.....+
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~--------~i~v~v~~n~nf~lp~~~~~P 442 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGD--------TIPVFVQPNKNFRLPEDPETP 442 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhcCCC--------eEEEEeccCCccccCCCCCCc
Confidence 4567799999995 35566666543 556777777655332 555555555 34433334489
Q ss_pred EEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCC
Q psy5584 1842 AVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHK 1921 (2014)
Q Consensus 1842 vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~ 1921 (2014)
+||||.|+||+||.++++........+ ++.|++++|+.++=..+.+++++..+. +...++....++..+.
T Consensus 443 iIMIG~GTGIAPFRafvq~r~~~~~~g--------k~wLfFG~R~~~~DfLY~~Ewe~~~~~--G~~~~l~~AfSRdq~~ 512 (587)
T COG0369 443 IIMIGPGTGIAPFRAFVQERAANGAEG--------KNWLFFGCRHFTEDFLYQEEWEEYLKD--GVLTRLDLAFSRDQEE 512 (587)
T ss_pred eEEEcCCCCchhHHHHHHHHHhccccC--------ceEEEecCCCCccchhhHHHHHHHHhc--CCceeEEEEEeecCCC
Confidence 999999999999999999988775444 899999999966555688988886654 2367777788886321
Q ss_pred CCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeC-ChhhHHHHHHHHHhhhcC
Q psy5584 1922 FDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCG-PRPLTKSIMSACEEVNKG 2000 (2014)
Q Consensus 1922 ~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCG-P~~m~~~vr~a~~~~~~~ 2000 (2014)
-+|+..+. |=+ .+.+.++.+. ...+|+|| +.+|.++|.+++.+.-.+
T Consensus 513 ------KiYVQd~l--------------------re~-~del~~~l~~-----ga~~YVCGd~~~Ma~dV~~AL~~il~~ 560 (587)
T COG0369 513 ------KIYVQDRL--------------------REQ-ADELWEWLEE-----GAHIYVCGDAKGMAKDVEEALLDILAK 560 (587)
T ss_pred ------CccHHHHH--------------------HHh-HHHHHHHHHC-----CCEEEEeCCCccchHHHHHHHHHHHHh
Confidence 11221110 001 1222222322 25699999 999999999999887643
No 120
>KOG0031|consensus
Probab=98.74 E-value=3e-07 Score=94.70 Aligned_cols=133 Identities=15% Similarity=0.285 Sum_probs=86.7
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHHHH
Q psy5584 1213 VFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQV 1292 (2014)
Q Consensus 1213 ~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~e~ 1292 (2014)
+++++.|+.+|.|+||.|+.+++...+..+++..+++++..+++. .+|.|++.-|..++....
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL------------- 94 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKL------------- 94 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHh-------------
Confidence 446777777777777777777777777777777777777777764 467777777777764311
Q ss_pred HHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCCChHH
Q psy5584 1293 TELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAV 1372 (2014)
Q Consensus 1293 ~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~~s~~ 1372 (2014)
.-..+++
T Consensus 95 -------------------------------------------------------------------------~gtdpe~ 101 (171)
T KOG0031|consen 95 -------------------------------------------------------------------------NGTDPEE 101 (171)
T ss_pred -------------------------------------------------------------------------cCCCHHH
Confidence 1111234
Q ss_pred HHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHH
Q psy5584 1373 FVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLR 1435 (2014)
Q Consensus 1373 ~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~ 1435 (2014)
.+...|..+|.+++|.|.-+.+.+++.......+++++..+|+.+-.|..|.++..+|..+++
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 455566666666666666666666666666556666666666666666666666666666665
No 121
>KOG1158|consensus
Probab=98.70 E-value=1.2e-07 Score=121.73 Aligned_cols=185 Identities=14% Similarity=0.236 Sum_probs=114.8
Q ss_pred CCcccccccCCCC--CCCeEEEEEEec------------CCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCC
Q psy5584 1774 NAAYHSFTLTSAP--HENFLSCHIKAQ------------GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKF 1839 (2014)
Q Consensus 1774 ~~e~HPFTIaS~p--~~~~l~l~Ir~~------------G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~ 1839 (2014)
..+.|+|||+|+| +.+.+.+.+-.. |-.|..|.++ ..+.. .......++..-- .+.+..
T Consensus 419 ~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l-~~~~~-----~~~~~~~~~s~fr-lp~dp~ 491 (645)
T KOG1158|consen 419 RLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNL-KPGEK-----VPNPVPVGKSMFR-LPSDPS 491 (645)
T ss_pred cccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhc-CCccc-----cCcceeeccccee-cCCCCC
Confidence 4588999999988 345555544331 3345555553 32221 1112333333322 223455
Q ss_pred ceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCC
Q psy5584 1840 EVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFF 1919 (2014)
Q Consensus 1840 ~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~ 1919 (2014)
.++||||.|+||+||.++++........+ ...... +.|+++||+.++.+.+.+++++..+. +...++.+-+++..
T Consensus 492 ~PiIMIGpGTGiAPFRgFlq~r~~~~~~~--~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~--~~l~~l~~A~SReq 566 (645)
T KOG1158|consen 492 TPIIMIGPGTGIAPFRGFLQERLFLKQQG--PKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKA--GILTRLDVAFSREQ 566 (645)
T ss_pred CcEEEEcCCCcchhhHHHHHHHHHhhhcC--ccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhc--CcchhheeeeeccC
Confidence 79999999999999999999998876655 233344 89999999999998899999887443 34556777777753
Q ss_pred CCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCChh-hHHHHHHHHHhhh
Q psy5584 1920 HKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRP-LTKSIMSACEEVN 1998 (2014)
Q Consensus 1920 ~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~~-m~~~vr~a~~~~~ 1998 (2014)
. ... .|+.... +=.-+++.+-+.+ .+..+|+||+.. |.++|.+++.+.-
T Consensus 567 ~---~~k--~YVQd~l--------------------~e~~d~v~~~L~~-----~~g~iYvCGd~~~Ma~dV~~~L~~i~ 616 (645)
T KOG1158|consen 567 T---PKK--IYVQDRL--------------------REYADEVWELLKK-----EGGHIYVCGDAKGMAKDVQDALVRIL 616 (645)
T ss_pred C---CCc--eehhhHH--------------------HHHHHHHHHHHhc-----CCcEEEEecCCccchHHHHHHHHHHH
Confidence 1 111 1111000 0011222222222 245699999998 9999999998876
Q ss_pred cC
Q psy5584 1999 KG 2000 (2014)
Q Consensus 1999 ~~ 2000 (2014)
.+
T Consensus 617 ~~ 618 (645)
T KOG1158|consen 617 AK 618 (645)
T ss_pred Hh
Confidence 44
No 122
>PLN02964 phosphatidylserine decarboxylase
Probab=98.66 E-value=9.5e-08 Score=123.54 Aligned_cols=64 Identities=36% Similarity=0.566 Sum_probs=59.7
Q ss_pred HHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHH
Q psy5584 1373 FVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1436 (2014)
Q Consensus 1373 ~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~ 1436 (2014)
+++++|+.+|.|++|.|+++||+.++..+....++++++.+|+.+|+|++|+|+.+||++++..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 3899999999999999999999999998776678889999999999999999999999999987
No 123
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.56 E-value=1.4e-07 Score=92.17 Aligned_cols=66 Identities=15% Similarity=0.316 Sum_probs=57.8
Q ss_pred HHHHHHHhhhcC-CCCCeeeHHHHHHHHHH-HHHhhcCCCCCH-HHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy5584 1408 DKLRIIFDMCDN-DRNGVIDKGELAEMLRS-LVEMARTTSLTD-SQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDY 1482 (2014)
Q Consensus 1408 e~l~~~F~~~D~-DgdG~Is~eEf~~~L~~-l~~~~~~~~ls~-~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~ 1482 (2014)
..+..+|+.||+ +++|+|+.+||+.++++ ++. .+++ ++ ++.||+.+|.|+||.|+|+||..+|...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~-----~ls~~~~----v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPH-----LLKDVEG----LEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhh-----hccCHHH----HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 458899999999 99999999999999998 776 5666 55 5558899999999999999999999764
No 124
>KOG0030|consensus
Probab=98.48 E-value=3e-06 Score=86.13 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=103.1
Q ss_pred cHHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCC--CCCcccHHHHHHHHHHHHHhhcCCCCC
Q psy5584 1211 DAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDND--RNGVIDKGELAEMLRSLVEMARTTSLT 1288 (2014)
Q Consensus 1211 ~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D--~dG~Is~eEF~~~l~~~~~~~~~~~~s 1288 (2014)
+.++++++|..||..+||+|+....-++|+.++...++.++.+....++.+ +--.|++++|..++..+....
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk------ 82 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK------ 82 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc------
Confidence 346789999999999999999999999999999999999999999999888 567899999999987743110
Q ss_pred HHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCC
Q psy5584 1289 DSQVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMK 1368 (2014)
Q Consensus 1289 ~~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~ 1368 (2014)
+ ..
T Consensus 83 ----------------------------------------------------------~-------q~------------ 85 (152)
T KOG0030|consen 83 ----------------------------------------------------------D-------QG------------ 85 (152)
T ss_pred ----------------------------------------------------------c-------cC------------
Confidence 0 11
Q ss_pred ChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHH
Q psy5584 1369 SDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEML 1434 (2014)
Q Consensus 1369 ~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L 1434 (2014)
+-++.-+-++.+|++++|.|...|+...+..+....+++++..+..-. .|.+|.|..++|.+.+
T Consensus 86 -t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 86 -TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred -cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHH
Confidence 222233334556777777777777777777776666666666665543 3566777777766544
No 125
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.42 E-value=6.1e-07 Score=83.27 Aligned_cols=61 Identities=30% Similarity=0.489 Sum_probs=53.9
Q ss_pred HHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHH----HHHHHHHhccCCCCCcccHHHHHHHH
Q psy5584 1215 VRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTED----KLRIIFDMCDNDRNGVIDKGELAEML 1275 (2014)
Q Consensus 1215 l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~ee----el~~lF~~~D~D~dG~Is~eEF~~~l 1275 (2014)
++++|..+|+|++|+|+.+||..++..+....+++ .+..+|+.+|.|+||.|+++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 68899999999999999999999999988665554 45566999999999999999999874
No 126
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.33 E-value=1.3e-06 Score=85.70 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=55.5
Q ss_pred HHHHHHHhhhc-CCCCC-eeeHHHHHHHHHH-----HHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy5584 1408 DKLRIIFDMCD-NDRNG-VIDKGELAEMLRS-----LVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMR 1480 (2014)
Q Consensus 1408 e~l~~~F~~~D-~DgdG-~Is~eEf~~~L~~-----l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~ 1480 (2014)
..++.+|+.|| +||+| .|+.+||+.+|+. ++. ..+++++++ +++.+|.|+||+|+|+||+.++.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~-----~~~~~~v~~----~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEE-----IKEQEVVDK----VMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcC-----CCCHHHHHH----HHHHhCCCCCCcCcHHHHHHHHH
Confidence 45899999998 89999 6999999999997 443 567776655 77889999999999999999886
Q ss_pred h
Q psy5584 1481 D 1481 (2014)
Q Consensus 1481 ~ 1481 (2014)
.
T Consensus 79 ~ 79 (88)
T cd05027 79 M 79 (88)
T ss_pred H
Confidence 5
No 127
>KOG0377|consensus
Probab=98.30 E-value=5.4e-06 Score=97.69 Aligned_cols=69 Identities=20% Similarity=0.359 Sum_probs=59.5
Q ss_pred HHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy5584 1408 DKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRD 1481 (2014)
Q Consensus 1408 e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~ 1481 (2014)
..+..+|+.+|+|++|.||.+||+.+.+-++.-.+. .++++++.+ +-+.+|.|+||+|++.||++.++-
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~-~i~~~~i~~----la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNG-AISDDEILE----LARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCC-CcCHHHHHH----HHHhhccCCCCcccHHHHHHHHhh
Confidence 468899999999999999999999999987765555 788888766 445699999999999999998864
No 128
>KOG2643|consensus
Probab=98.30 E-value=1.5e-06 Score=103.39 Aligned_cols=162 Identities=16% Similarity=0.299 Sum_probs=108.6
Q ss_pred HHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Q psy5584 1219 FNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDG 1298 (2014)
Q Consensus 1219 F~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~e~~~~i~~ 1298 (2014)
-..|-++++|+++++||.+++..+. ++-++.-|..+|...+|.|+..+|..++-.... ...+....+
T Consensus 292 ~yFFG~rg~~kLs~deF~~F~e~Lq----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~------~n~~~k~~~--- 358 (489)
T KOG2643|consen 292 TYFFGKRGNGKLSIDEFLKFQENLQ----EEILELEFERFDKGDSGAISEVDFAELLLAYAG------VNSKKKHKY--- 358 (489)
T ss_pred HHhhccCCCccccHHHHHHHHHHHH----HHHHHHHHHHhCcccccccCHHHHHHHHHHHcc------cchHhHHHH---
Confidence 3457899999999999999998774 566777899999999999999999998865321 111110001
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCCChHHHHHHHH
Q psy5584 1299 MFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMF 1378 (2014)
Q Consensus 1299 ~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~~s~~~l~~lf 1378 (2014)
+++....+. . .+..|+.+||+.....-..-.+++..+
T Consensus 359 --------------------------lkrvk~kf~----------~-------~~~gISl~Ef~~Ff~Fl~~l~dfd~Al 395 (489)
T KOG2643|consen 359 --------------------------LKRVKEKFK----------D-------DGKGISLQEFKAFFRFLNNLNDFDIAL 395 (489)
T ss_pred --------------------------HHHHHHhcc----------C-------CCCCcCHHHHHHHHHHHhhhhHHHHHH
Confidence 011100000 0 123588888887664332223333333
Q ss_pred HHHccCCCCceeHHHHHHHHHHHhc-CCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHH
Q psy5584 1379 NIVDKDGDGRISFQEFLDTVVLFSR-GHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1437 (2014)
Q Consensus 1379 ~~~D~DgdG~Isf~EFl~~l~~~~~-~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l 1437 (2014)
..+- .-.+.|+..+|..+...... ..++.-+..+|..||.|+||.||.+||..+++.-
T Consensus 396 ~fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 396 RFYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 3333 23567999999888776443 2444567788999999999999999999999863
No 129
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.29 E-value=1.4e-06 Score=86.64 Aligned_cols=70 Identities=20% Similarity=0.406 Sum_probs=54.5
Q ss_pred HHHHHHHhhhc-CCCCC-eeeHHHHHHHHHH-HHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy5584 1408 DKLRIIFDMCD-NDRNG-VIDKGELAEMLRS-LVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDY 1482 (2014)
Q Consensus 1408 e~l~~~F~~~D-~DgdG-~Is~eEf~~~L~~-l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~ 1482 (2014)
..+..+|+.|| +||+| .||.+||+.++.. ++..... ..++++ ++.|++++|.|+||.|+|+||+.+|...
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~-~~~~~~----v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSS-QKDPML----VDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccc-ccCHHH----HHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 45788899999 89998 5999999999976 3331111 234444 5558889999999999999999999764
No 130
>PLN02964 phosphatidylserine decarboxylase
Probab=98.25 E-value=6.3e-06 Score=107.00 Aligned_cols=95 Identities=24% Similarity=0.341 Sum_probs=80.7
Q ss_pred HHHHHhhhcCCCCCCcCCCCccccccccccCcCHHHHHHHhC-CCCcHHH---HHHHHHhhcCCCCcceeHHHHHHHHHH
Q psy5584 1166 FREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALG-MKSDAVF---VRMMFNIVDKDGDGRISFQEFLDTVVL 1241 (2014)
Q Consensus 1166 ~~~~F~~~~d~d~~~~~~~~~~~~~~~l~~~Ls~~El~~~L~-~~~~~~~---l~~lF~~~D~dgdG~Is~~EF~~~l~~ 1241 (2014)
++++|. .+|.|++ +.+ ...+-+.++ ..++..+ ++.+|+.+|.|++|.|+++||..++..
T Consensus 145 lkeaF~-lfD~dgd---------------G~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~ 207 (644)
T PLN02964 145 ACESFD-LLDPSSS---------------NKV-VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA 207 (644)
T ss_pred HHHHHH-HHCCCCC---------------CcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 566777 4788766 333 445556777 4676665 899999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHH
Q psy5584 1242 FSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1277 (2014)
Q Consensus 1242 l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~ 1277 (2014)
+....++++++.+|+.+|.|++|.|+++||..++..
T Consensus 208 lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 208 FGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred hccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 888889999999999999999999999999999876
No 131
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=98.23 E-value=1.4e-05 Score=90.74 Aligned_cols=99 Identities=14% Similarity=0.194 Sum_probs=72.0
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccccccccccccCCCCCCCcceeeeccccchhHHHHHHH
Q psy5584 1580 QYIPLDSHIQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGITFWLFQTITGITGVLLFV 1659 (2014)
Q Consensus 1580 ~~i~~d~~~~~Hr~ig~~~~~~~~lH~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~g~tGii~~~ 1659 (2014)
...+.+..+.+||++|..+++++++|.++|++..... .++. ...++ ......+.|.++++
T Consensus 66 ~l~~~~~l~~~RR~LGl~af~~a~lH~~~y~~~~~~~---~~~~---~~~~i--------------~~~~~i~~G~ia~~ 125 (205)
T PRK05419 66 RLTGQPLLIRTRRLLGLWAFFYATLHLLSYLLLDLGL---DWSL---LGKEI--------------VKRPYITVGMAAFL 125 (205)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cHHH---HHHHH--------------HhchHHHHHHHHHH
Confidence 4455678999999999999999999999876543211 0000 00000 01111246999999
Q ss_pred HHHHHHHhhhHHHhhh-hhhHHHHHHHHHHHHHHHHHhhcc
Q psy5584 1660 IMVLIFVFAHPTIRKK-AYNWFWLAHSLYVFLFALMLIHGL 1699 (2014)
Q Consensus 1660 ~l~im~v~S~~~iRr~-~Ye~F~~~H~l~~~~~vl~~~H~~ 1699 (2014)
+++.|.++|....||+ .| .|..+|.+..+++++.++|..
T Consensus 126 lLl~LaiTS~~~~~rrLg~-~Wk~LH~l~Y~a~~L~~~H~~ 165 (205)
T PRK05419 126 ILLPLALTSTRASQRRLGK-RWQKLHRLVYLIAILAPLHYL 165 (205)
T ss_pred HHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988765 67 899999998888889999953
No 132
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.20 E-value=3.9e-06 Score=82.17 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhcC-CCCcceeHHHHHHHHHH-hcCCCCH-HHHHHHHHhccCCCCCcccHHHHHHHHHHHH
Q psy5584 1212 AVFVRMMFNIVDK-DGDGRISFQEFLDTVVL-FSRGHTE-DKLRIIFDMCDNDRNGVIDKGELAEMLRSLV 1279 (2014)
Q Consensus 1212 ~~~l~~lF~~~D~-dgdG~Is~~EF~~~l~~-l~~~~~e-eel~~lF~~~D~D~dG~Is~eEF~~~l~~~~ 1279 (2014)
...+..+|..+|+ +++|+|+..||+.++.. ++...+. ++++.+++.+|.|+||.|+|+||..++..+.
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3568899999999 99999999999999999 7766777 8999999999999999999999999987753
No 133
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.15 E-value=7.1e-06 Score=81.61 Aligned_cols=71 Identities=15% Similarity=0.357 Sum_probs=56.8
Q ss_pred HHHHHHHhhhc-CCCCC-eeeHHHHHHHHHH-HHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCc
Q psy5584 1408 DKLRIIFDMCD-NDRNG-VIDKGELAEMLRS-LVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYK 1483 (2014)
Q Consensus 1408 e~l~~~F~~~D-~DgdG-~Is~eEf~~~L~~-l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~ 1483 (2014)
+.++.+|+.|| +|++| .|+.+||+.+|+. ++...+. ..+++++ +.+|+.+|.|++|.|+|+||+.++...-
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~-~~s~~~v----~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDA-QKDADAV----DKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccC-CCCHHHH----HHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 56999999997 99999 5999999999985 6542222 3455554 4488889999999999999999987643
No 134
>KOG0377|consensus
Probab=98.10 E-value=5e-05 Score=89.84 Aligned_cols=149 Identities=21% Similarity=0.306 Sum_probs=108.3
Q ss_pred cHHHHHHHHHhhcCCCCcceeHHHHHHHHHH-hcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCH
Q psy5584 1211 DAVFVRMMFNIVDKDGDGRISFQEFLDTVVL-FSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTD 1289 (2014)
Q Consensus 1211 ~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~-l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~ 1289 (2014)
...++.+-|..+|.+++|+|+...+..++.. .+.+++-..++- +....+.||.+.|.+-.+.+....
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~--kla~~s~d~~v~Y~~~~~~l~~e~---------- 529 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRP--KLANGSDDGKVEYKSTLDNLDTEV---------- 529 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhh--hccCCCcCcceehHhHHHHhhhhh----------
Confidence 3456888999999999999999999999987 445565444433 334556677888887766654311
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCCC
Q psy5584 1290 SQVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKS 1369 (2014)
Q Consensus 1290 ~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~~ 1369 (2014)
..++.....++.+++
T Consensus 530 ----------------------~~~ea~~slvetLYr------------------------------------------- 544 (631)
T KOG0377|consen 530 ----------------------ILEEAGSSLVETLYR------------------------------------------- 544 (631)
T ss_pred ----------------------HHHHHHhHHHHHHHh-------------------------------------------
Confidence 000111112222221
Q ss_pred hHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcC----CcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHH
Q psy5584 1370 DAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRG----HTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1436 (2014)
Q Consensus 1370 s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~----~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~ 1436 (2014)
....++.+|+.+|.|++|.||.+||..++..+... .+++.+-++-+.+|.|+||+|+.+||.++++-
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 12348899999999999999999999998876543 56778888999999999999999999999873
No 135
>KOG0038|consensus
Probab=98.10 E-value=1.4e-05 Score=81.17 Aligned_cols=82 Identities=27% Similarity=0.452 Sum_probs=63.2
Q ss_pred CcCHHHHHHHhCCCCcHHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCH-HHHHHHHHhccCCCCCcccHHHHHHH
Q psy5584 1196 SLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTE-DKLRIIFDMCDNDRNGVIDKGELAEM 1274 (2014)
Q Consensus 1196 ~Ls~~El~~~L~~~~~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~e-eel~~lF~~~D~D~dG~Is~eEF~~~ 1274 (2014)
.+..+.+.+...++.+. +-+++-..|-.||.|.++|++|++++..+....+. -++..+|+.||-|+|+.|..+++...
T Consensus 55 ~vp~e~i~kMPELkenp-fk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~ 133 (189)
T KOG0038|consen 55 KVPFELIEKMPELKENP-FKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKT 133 (189)
T ss_pred eecHHHHhhChhhhcCh-HHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHH
Confidence 45555555544444332 34566777889999999999999999988765554 36788999999999999999999998
Q ss_pred HHHH
Q psy5584 1275 LRSL 1278 (2014)
Q Consensus 1275 l~~~ 1278 (2014)
+..+
T Consensus 134 l~~l 137 (189)
T KOG0038|consen 134 LTSL 137 (189)
T ss_pred HHHH
Confidence 8774
No 136
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.09 E-value=6.4e-06 Score=80.80 Aligned_cols=65 Identities=17% Similarity=0.398 Sum_probs=55.2
Q ss_pred HHHHHHhhhcC-CC-CCeeeHHHHHHHHHH---HHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy5584 1409 KLRIIFDMCDN-DR-NGVIDKGELAEMLRS---LVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDY 1482 (2014)
Q Consensus 1409 ~l~~~F~~~D~-Dg-dG~Is~eEf~~~L~~---l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~ 1482 (2014)
.+-.+|+.||. || +|+|+.+||+.+++. ++. +++++++++ +|+.+|.|++|+|+|+||+.+|...
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~-----k~t~~ev~~----m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGS-----KLQDAEIAK----LMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCC-----CCCHHHHHH----HHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 47788999998 77 899999999999974 343 788887666 7888999999999999999988753
No 137
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.09 E-value=8.8e-06 Score=81.30 Aligned_cols=71 Identities=14% Similarity=0.343 Sum_probs=56.2
Q ss_pred HHHHHHHhhhcC-CC-CCeeeHHHHHHHHHH-HHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCc
Q psy5584 1408 DKLRIIFDMCDN-DR-NGVIDKGELAEMLRS-LVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYK 1483 (2014)
Q Consensus 1408 e~l~~~F~~~D~-Dg-dG~Is~eEf~~~L~~-l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~ 1483 (2014)
..++.+|+.||. |+ +|.|+.+|++.+++. ++...+. ..++++++. +++.+|.|++|.|+|+||+.++....
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~-~~s~~ei~~----~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKN-QKDPMAVDK----IMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhc-cccHHHHHH----HHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 468999999997 97 799999999999986 3321122 556665544 88889999999999999999987543
No 138
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.03 E-value=1.8e-05 Score=77.62 Aligned_cols=67 Identities=15% Similarity=0.273 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhc-CCCCc-ceeHHHHHHHHHH-----hcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q psy5584 1212 AVFVRMMFNIVD-KDGDG-RISFQEFLDTVVL-----FSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1278 (2014)
Q Consensus 1212 ~~~l~~lF~~~D-~dgdG-~Is~~EF~~~l~~-----l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~ 1278 (2014)
...+.++|..+| +||+| .|+..||..+|.. ++...+++++..+++.+|.|++|.|+++||..++...
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 356899999998 89999 6999999999998 7778889999999999999999999999999988764
No 139
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.00 E-value=3.4e-05 Score=77.44 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=61.1
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhh
Q psy5584 1213 VFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMA 1282 (2014)
Q Consensus 1213 ~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~ 1282 (2014)
..++.+|..+|.|++|.|+.+|+..++... +.++++++.+|..+|.+++|.|+++||..++.......
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS--GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999885 47889999999999999999999999999998765443
No 140
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.98 E-value=2.6e-05 Score=76.69 Aligned_cols=70 Identities=17% Similarity=0.348 Sum_probs=54.2
Q ss_pred HHHHHHHhh-hcCCCCC-eeeHHHHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy5584 1408 DKLRIIFDM-CDNDRNG-VIDKGELAEMLRSLVEM-ARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDY 1482 (2014)
Q Consensus 1408 e~l~~~F~~-~D~DgdG-~Is~eEf~~~L~~l~~~-~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~ 1482 (2014)
..+..+|+. +|+||+| .|+.+||+.++...... ... ..++.++ +.+|+.+|.|+||.|+|+||+.+|...
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~-~~~~~~~----~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKN-QKDPGVL----DRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcC-CCCHHHH----HHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 457889999 7888986 99999999999875321 111 3445554 448889999999999999999988753
No 141
>KOG0751|consensus
Probab=97.98 E-value=6.7e-05 Score=89.97 Aligned_cols=186 Identities=20% Similarity=0.345 Sum_probs=132.1
Q ss_pred cCcCHHHHHH-HhCC----CCcHHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHH
Q psy5584 1195 TSLSRAEFAS-ALGM----KSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKG 1269 (2014)
Q Consensus 1195 ~~Ls~~El~~-~L~~----~~~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~e 1269 (2014)
..++.+.|.+ .|++ ..+++.++-+=...|.-+||-|||+||+.+-..++ .++.....+|+.||..++|.+|++
T Consensus 51 ~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC--~pDal~~~aFqlFDr~~~~~vs~~ 128 (694)
T KOG0751|consen 51 SYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC--APDALFEVAFQLFDRLGNGEVSFE 128 (694)
T ss_pred cccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc--CchHHHHHHHHHhcccCCCceehH
Confidence 5788888875 3432 23455566666777899999999999998765554 457788999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCccc
Q psy5584 1270 ELAEMLRSLVEMARTTSLTDSQVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGE 1349 (2014)
Q Consensus 1270 EF~~~l~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~ 1349 (2014)
++...+....-.
T Consensus 129 ~~~~if~~t~l~-------------------------------------------------------------------- 140 (694)
T KOG0751|consen 129 DVADIFGQTNLH-------------------------------------------------------------------- 140 (694)
T ss_pred HHHHHHhccccc--------------------------------------------------------------------
Confidence 999988652100
Q ss_pred ccccccccHHHHHHHhCCCChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHH
Q psy5584 1350 VVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGE 1429 (2014)
Q Consensus 1350 ~~~~g~ls~~Ef~~~Lg~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eE 1429 (2014)
...-.+.+.+++...|.. +..-.++|.||.+++..+.. |..+++|+..|+.++|+||.-+
T Consensus 141 -------------~~~~f~~d~efI~~~Fg~---~~~r~~ny~~f~Q~lh~~~~----E~~~qafr~~d~~~ng~is~Ld 200 (694)
T KOG0751|consen 141 -------------HHIPFNWDSEFIKLHFGD---IRKRHLNYAEFTQFLHEFQL----EHAEQAFREKDKAKNGFISVLD 200 (694)
T ss_pred -------------cCCCccCCcchHHHHhhh---HHHHhccHHHHHHHHHHHHH----HHHHHHHHHhcccCCCeeeeec
Confidence 001223344556654432 34457999999999987643 6689999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Q psy5584 1430 LAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLM 1478 (2014)
Q Consensus 1430 f~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~ 1478 (2014)
|+.++..... .+....+++.. ...++.+..-++|+..|..+
T Consensus 201 fq~imvt~~~-----h~lt~~v~~nl---v~vagg~~~H~vSf~yf~af 241 (694)
T KOG0751|consen 201 FQDIMVTIRI-----HLLTPFVEENL---VSVAGGNDSHQVSFSYFNAF 241 (694)
T ss_pred hHhhhhhhhh-----hcCCHHHhhhh---hhhcCCCCccccchHHHHHH
Confidence 9999876544 55555555422 22344445557888777653
No 142
>KOG4251|consensus
Probab=97.95 E-value=7.2e-05 Score=82.18 Aligned_cols=182 Identities=17% Similarity=0.129 Sum_probs=114.0
Q ss_pred CHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy5584 1247 TEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFR 1326 (2014)
Q Consensus 1247 ~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~ 1326 (2014)
+.+++..+|...|.|.||+|+..|+.+.+..-. ++..++.+++-
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImekt----------------------------------aEHfqeameeS-- 142 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKT----------------------------------AEHFQEAMEES-- 142 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHH----------------------------------HHHHHHHHhhh--
Confidence 346788999999999999999999998875411 11111111111
Q ss_pred HHHHhhhCCCCCCccccCCCcccccccccccHHHHHHH---------------h--CCCChHHHHHHHHHHHccCCCCce
Q psy5584 1327 EAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASA---------------L--GMKSDAVFVRMMFNIVDKDGDGRI 1389 (2014)
Q Consensus 1327 ~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~---------------L--g~~~s~~~l~~lf~~~D~DgdG~I 1389 (2014)
+.-+..-|.|++| .++-+||+-. + .-...-.+-.+.+..-+++..++.
T Consensus 143 ---------kthFraVDpdgDG------hvsWdEykvkFlaskghsekevadairlneelkVDeEtqevlenlkdRwyqa 207 (362)
T KOG4251|consen 143 ---------KTHFRAVDPDGDG------HVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQA 207 (362)
T ss_pred ---------hhheeeeCCCCCC------ceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhhccc
Confidence 1112234556666 4454554432 2 111111223455566666776666
Q ss_pred eH---------HHHHHHHHHHh-cCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q psy5584 1390 SF---------QEFLDTVVLFS-RGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMF 1459 (2014)
Q Consensus 1390 sf---------~EFl~~l~~~~-~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if 1459 (2014)
+- +||+.++.... .+.-..-++.+...+|+|||-.+|..||.....-..+......+.+..++.-.++.=
T Consensus 208 DsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFe 287 (362)
T KOG4251|consen 208 DSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFE 287 (362)
T ss_pred cCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHH
Confidence 65 89988876432 223344577788899999999999999987654322211111556666666566666
Q ss_pred HHcCCCCCCcccHHHHHHHH
Q psy5584 1460 QDAGLDSKDFLTYQDFKLMM 1479 (2014)
Q Consensus 1460 ~~~D~d~dG~Is~eEF~~~l 1479 (2014)
+.+|.|.||.++++|+...+
T Consensus 288 ElIDsNhDGivTaeELe~y~ 307 (362)
T KOG4251|consen 288 ELIDSNHDGIVTAEELEDYV 307 (362)
T ss_pred HHhhcCCccceeHHHHHhhc
Confidence 77899999999999998874
No 143
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.95 E-value=2.9e-05 Score=77.32 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=58.1
Q ss_pred HHHHHHHHhhc-CCCCc-ceeHHHHHHHHHHh-----cCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHH
Q psy5584 1213 VFVRMMFNIVD-KDGDG-RISFQEFLDTVVLF-----SRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLV 1279 (2014)
Q Consensus 1213 ~~l~~lF~~~D-~dgdG-~Is~~EF~~~l~~l-----~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~ 1279 (2014)
..+.++|..+| +||+| +|+.+||..++... ....+++++..+++.+|.|+||.|+++||..++..+.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 46788899999 78998 59999999999762 3345778999999999999999999999999987753
No 144
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.93 E-value=2.8e-05 Score=78.05 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=55.7
Q ss_pred HHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCc
Q psy5584 1408 DKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYK 1483 (2014)
Q Consensus 1408 e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~ 1483 (2014)
+.++.+|+.+|+|++|.|+.+|++.+++.. ++++++++ .|++.+|.+++|.|+|+||+.++....
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-------~~~~~ev~----~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS-------GLPQTLLA----KIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-------CCCHHHHH----HHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 568999999999999999999999999863 56776654 478889999999999999999887543
No 145
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.90 E-value=2.8e-05 Score=72.19 Aligned_cols=61 Identities=25% Similarity=0.318 Sum_probs=51.5
Q ss_pred HHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy5584 1411 RIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDY 1482 (2014)
Q Consensus 1411 ~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~ 1482 (2014)
+.+|+.+|+|++|.|+.+|++.+++.+ .++++++ +.+++.+|.+++|.|+|+||+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-------g~~~~~~----~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-------GLPRSVL----AQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-------CCCHHHH----HHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 568999999999999999999999864 3455554 458889999999999999999988643
No 146
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.89 E-value=2.1e-05 Score=77.65 Aligned_cols=70 Identities=16% Similarity=0.381 Sum_probs=55.5
Q ss_pred HHHHHHHhhhcC--CCCCeeeHHHHHHHHHH-HHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy5584 1408 DKLRIIFDMCDN--DRNGVIDKGELAEMLRS-LVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDY 1482 (2014)
Q Consensus 1408 e~l~~~F~~~D~--DgdG~Is~eEf~~~L~~-l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~ 1482 (2014)
+.++.+|+.+|+ |++|.|+.+||..+++. ++..... ..++++ ++.||+.+|.+++|.|+|+||+.++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~-~~~~~e----i~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKN-QKDPEA----VDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccC-CCCHHH----HHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 568899999999 89999999999999986 4431111 234555 4558889999999999999999988754
No 147
>KOG1159|consensus
Probab=97.89 E-value=5.3e-05 Score=91.82 Aligned_cols=179 Identities=16% Similarity=0.225 Sum_probs=105.9
Q ss_pred EEEEEecCCCCCcccccccCCCCCCCeEEEEEEec-----------CCccHHHHhhhccCCCCCCCCCcEEEEECCCCCC
Q psy5584 1764 WVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKAQ-----------GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGG 1832 (2014)
Q Consensus 1764 yv~L~~p~~~~~e~HPFTIaS~p~~~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~ 1832 (2014)
|+.=.+|.+ ..|.|||||.|...+++|.|..+ |=.|+.|..+ .+++ ..++.|. =|..
T Consensus 358 yl~d~~P~I---rPR~fSIas~~~~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL-~~g~------~i~~~v~--~g~l 425 (574)
T KOG1159|consen 358 YLLDLLPVI---RPRAFSIASSPGAHHLELLVAIVEYKTILKEPRRGLCSNWLASL-KPGD------EIPIKVR--PGTL 425 (574)
T ss_pred HHHHhcccc---ccceeeeccCCCCCceeEEEEEEEEeeeccccccchhHHHHhhc-CCCC------eEEEEEe--cCcc
Confidence 333344544 56889999999887788777533 6667777655 2221 2233333 2444
Q ss_pred CCCcCCCceEEEEEeccchhhHHHHHHHHHhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEE
Q psy5584 1833 NQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIH 1912 (2014)
Q Consensus 1833 ~~~~~~~~~vvlIaGGiGITP~lsiL~~l~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~ 1912 (2014)
..+.....++||||-|+||||+.|++++-+.+.. +...|+++||..+.-..|.++..++.+.+ .+
T Consensus 426 ~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q~~---------~~~~lFfGCR~K~~Df~y~~eW~~~~~~~------~~ 490 (574)
T KOG1159|consen 426 YFPSDLNKPLIMVGPGTGVAPFRALIQERIYQGD---------KENVLFFGCRNKDKDFLYEDEWTELNKRA------FH 490 (574)
T ss_pred ccCCCCCCCeEEEcCCCCcccHHHHHHHHHhhcc---------CCceEEEecccCCccccccchhhhhhcch------hh
Confidence 3322335699999999999999999998775422 23468889998766555666555554332 33
Q ss_pred EEEcCCCCCCCcchhhhhhhhcccccccccccccCcccccccCCCCHHHHHHHHHHhCCCCCeEEEEEeCCh-hhHHHHH
Q psy5584 1913 IFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPR-PLTKSIM 1991 (2014)
Q Consensus 1913 iyvT~~~~~~d~~~~~~~~~e~~~~~~~~~~~~tgl~~~~~~GRPd~~~il~~l~~~~~~~~~v~V~vCGP~-~m~~~vr 1991 (2014)
...+++.+ ... |+. |.=|=+-+.+ -++... ....||+||+. .|-.+|+
T Consensus 491 ~AFSRDqe----~kv--YVQ--------------------h~i~e~g~~v-~~Ll~~----~gA~~fvaGsS~~MP~~V~ 539 (574)
T KOG1159|consen 491 TAFSRDQE----QKV--YVQ--------------------HKIRENGEEV-WDLLDN----LGAYFFVAGSSGKMPKDVK 539 (574)
T ss_pred hhcccccc----cce--eHH--------------------HHHHHhhHHH-HHHHhc----cCCEEEEecCCCCCcHHHH
Confidence 33444322 111 110 0001111111 222221 24569999988 8999999
Q ss_pred HHHHhhhcC
Q psy5584 1992 SACEEVNKG 2000 (2014)
Q Consensus 1992 ~a~~~~~~~ 2000 (2014)
.++.+...+
T Consensus 540 ~al~eI~~~ 548 (574)
T KOG1159|consen 540 EALIEIVGK 548 (574)
T ss_pred HHHHHHhhh
Confidence 999987654
No 148
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.85 E-value=2.5e-05 Score=69.38 Aligned_cols=52 Identities=23% Similarity=0.534 Sum_probs=45.0
Q ss_pred CCCeeeHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy5584 1421 RNGVIDKGELAEMLRSLVEMARTTS-LTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRD 1481 (2014)
Q Consensus 1421 gdG~Is~eEf~~~L~~l~~~~~~~~-ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~ 1481 (2014)
.+|.|+.+||+.++..++. . +++++++. +|..+|.|++|+|+|+||+.+|.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~-----~~~s~~e~~~----l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGI-----KDLSEEEVDR----LFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTS-----SSSCHHHHHH----HHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCC-----CCCCHHHHHH----HHHhcccCCCCCCCHHHHHHHHHh
Confidence 4799999999999976654 6 88888655 888899999999999999999864
No 149
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.84 E-value=4.2e-05 Score=67.88 Aligned_cols=52 Identities=25% Similarity=0.433 Sum_probs=47.6
Q ss_pred CCcceeHHHHHHHHHHhcCC-CCHHHHHHHHHhccCCCCCcccHHHHHHHHHH
Q psy5584 1226 GDGRISFQEFLDTVVLFSRG-HTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1277 (2014)
Q Consensus 1226 gdG~Is~~EF~~~l~~l~~~-~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~ 1277 (2014)
.+|.|+.+||..++..++.. .+++++..+|..+|.|++|.|+++||..++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888888 99999999999999999999999999998754
No 150
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.84 E-value=5.9e-05 Score=75.04 Aligned_cols=67 Identities=22% Similarity=0.337 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhc-CCCCc-ceeHHHHHHHHHH-hc----CCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q psy5584 1212 AVFVRMMFNIVD-KDGDG-RISFQEFLDTVVL-FS----RGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1278 (2014)
Q Consensus 1212 ~~~l~~lF~~~D-~dgdG-~Is~~EF~~~l~~-l~----~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~ 1278 (2014)
.+.++++|..+| .|++| .|+..||..++.. ++ ...++++++.+|+.+|.|++|.|+++||..++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 356899999997 99999 5999999999975 33 34578999999999999999999999999988764
No 151
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.83 E-value=3.8e-05 Score=71.28 Aligned_cols=60 Identities=32% Similarity=0.418 Sum_probs=55.3
Q ss_pred HHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHH
Q psy5584 1216 RMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1277 (2014)
Q Consensus 1216 ~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~ 1277 (2014)
+++|..+|+|++|.|+.+|+..++...+ .++++++.+|+.+|.|++|.|+++||..++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 5789999999999999999999998864 48899999999999999999999999998865
No 152
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.82 E-value=5.6e-05 Score=68.23 Aligned_cols=61 Identities=33% Similarity=0.563 Sum_probs=57.6
Q ss_pred HHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHH
Q psy5584 1215 VRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEML 1275 (2014)
Q Consensus 1215 l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l 1275 (2014)
++.+|..+|.+++|.|+++||..++..+....+.+.+..+|+.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999999999999998765
No 153
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.82 E-value=5.9e-05 Score=75.36 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhcC-CC-CcceeHHHHHHHHHH-----hcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q psy5584 1212 AVFVRMMFNIVDK-DG-DGRISFQEFLDTVVL-----FSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1278 (2014)
Q Consensus 1212 ~~~l~~lF~~~D~-dg-dG~Is~~EF~~~l~~-----l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~ 1278 (2014)
...++.+|..+|. |+ +|.|+.+|+..++.. ++...+++++..+++.+|.|++|.|+++||..++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3568899999997 97 799999999999986 3556788999999999999999999999999988653
No 154
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.80 E-value=3.6e-05 Score=79.19 Aligned_cols=61 Identities=20% Similarity=0.349 Sum_probs=51.0
Q ss_pred HHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy5584 1408 DKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRD 1481 (2014)
Q Consensus 1408 e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~ 1481 (2014)
.++..+|..+|+|+||.||.+|+..+. +. .. +..+..+|+.+|.|+||.||++||..++.+
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~-------~~----e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR--LD-------PN----EHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH--cc-------ch----HHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 568999999999999999999999876 21 12 234566899999999999999999999943
No 155
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.73 E-value=0.00011 Score=72.07 Aligned_cols=66 Identities=12% Similarity=0.256 Sum_probs=58.9
Q ss_pred HHHHHHHHhhcC-CC-CcceeHHHHHHHHHH---hcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q psy5584 1213 VFVRMMFNIVDK-DG-DGRISFQEFLDTVVL---FSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1278 (2014)
Q Consensus 1213 ~~l~~lF~~~D~-dg-dG~Is~~EF~~~l~~---l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~ 1278 (2014)
..+-.+|..+|. || +|+|+.+||..++.. ++...+++++..+|+.+|.|++|.|+++||..++..+
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 356788999998 77 899999999999974 5777899999999999999999999999999988764
No 156
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.69 E-value=9.1e-05 Score=76.30 Aligned_cols=62 Identities=27% Similarity=0.378 Sum_probs=54.9
Q ss_pred cHHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHH
Q psy5584 1211 DAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLR 1276 (2014)
Q Consensus 1211 ~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~ 1276 (2014)
-...+..+|..+|+|+||.|+.+|+..+. ....+..+..+|+.+|.|+||.||++||...+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 44668999999999999999999999876 345577889999999999999999999999983
No 157
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.67 E-value=7.2e-05 Score=67.48 Aligned_cols=61 Identities=30% Similarity=0.548 Sum_probs=52.1
Q ss_pred HHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q psy5584 1410 LRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMM 1479 (2014)
Q Consensus 1410 l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l 1479 (2014)
+..+|+.+|.|++|.|+.+|+..+++.++. ..+.+.+. .+|+.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~-----~~~~~~~~----~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE-----GLSEEEID----EMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-----CCCHHHHH----HHHHHhCCCCCCeEeHHHHHHHh
Confidence 577899999999999999999999997654 56666544 48888999999999999999875
No 158
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.66 E-value=0.00017 Score=70.91 Aligned_cols=66 Identities=23% Similarity=0.308 Sum_probs=57.6
Q ss_pred HHHHHHHHh-hcCCCCc-ceeHHHHHHHHHHh-----cCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q psy5584 1213 VFVRMMFNI-VDKDGDG-RISFQEFLDTVVLF-----SRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1278 (2014)
Q Consensus 1213 ~~l~~lF~~-~D~dgdG-~Is~~EF~~~l~~l-----~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~ 1278 (2014)
..+..+|.. +|+||+| +|+.+||..++... .......++..+++.+|.|+||.|+++||..++..+
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 457889999 8899986 99999999999885 345667899999999999999999999999988764
No 159
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.61 E-value=0.00016 Score=71.39 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhcC--CCCcceeHHHHHHHHHH-hcC----CCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q psy5584 1212 AVFVRMMFNIVDK--DGDGRISFQEFLDTVVL-FSR----GHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1278 (2014)
Q Consensus 1212 ~~~l~~lF~~~D~--dgdG~Is~~EF~~~l~~-l~~----~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~ 1278 (2014)
...++.+|..+|+ |++|.|+.+||..++.. ++. ..+++++..++..+|.|++|.|+++||..++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4568889999999 89999999999999976 332 3458999999999999999999999999988653
No 160
>KOG4666|consensus
Probab=97.56 E-value=4.3e-05 Score=87.56 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=98.8
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcC-CcHHHHHHHHhhhcCCCCCeeeHHHHHH
Q psy5584 1354 TSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRG-HTEDKLRIIFDMCDNDRNGVIDKGELAE 1432 (2014)
Q Consensus 1354 g~ls~~Ef~~~Lg~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~-~~~e~l~~~F~~~D~DgdG~Is~eEf~~ 1432 (2014)
+.+.-.||+..+..+.+ ..++.+|..||.+++|.++|.|.+..+..++.. ...+.++-+|++||.+.||.+..++|.-
T Consensus 242 ~~igi~efa~~l~vpvs-d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ 320 (412)
T KOG4666|consen 242 PDIGIVEFAVNLRVPVS-DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSL 320 (412)
T ss_pred CCcceeEeeeeeecchh-hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHH
Confidence 45666777777777766 448999999999999999999998887776654 6778899999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCcccc
Q psy5584 1433 MLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYKGDF 1486 (2014)
Q Consensus 1433 ~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~~~l 1486 (2014)
+++... ++.+-. +-.+|.+.+...||+|+|++|.+++..++...
T Consensus 321 ilq~~l------gv~~l~----v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a 364 (412)
T KOG4666|consen 321 ILQVVL------GVEVLR----VPVLFPSIEQKDDPKIYASNFRKFAATEPNLA 364 (412)
T ss_pred HHHHhc------Ccceee----ccccchhhhcccCcceeHHHHHHHHHhCchhh
Confidence 888532 222211 23378889999999999999999999998753
No 161
>KOG0040|consensus
Probab=97.55 E-value=0.00053 Score=91.15 Aligned_cols=143 Identities=24% Similarity=0.338 Sum_probs=108.0
Q ss_pred CCCCHH---HHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHH
Q psy5584 1244 RGHTED---KLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQSPRELMLAKAETRERRQKK 1320 (2014)
Q Consensus 1244 ~~~~ee---el~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~ 1320 (2014)
.+.+++ ++..+|+.||.+.+|.+++++|..++++.+-..
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~l-------------------------------------- 2286 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDL-------------------------------------- 2286 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCC--------------------------------------
Confidence 456665 456789999999999999999999998743100
Q ss_pred HHHHHHHHHHhhhCCCCCCccccCCCcccccccccccHHHHHHHhCCCChHHHHHHHHHHHccCCCCceeHHHHHHHHHH
Q psy5584 1321 LEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVL 1400 (2014)
Q Consensus 1321 ~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g~ls~~Ef~~~Lg~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~ 1400 (2014)
. +-..| -.+..++++++.+|.+.+|+|+.+||+.+|..
T Consensus 2287 -------------------p---mvEe~--------------------~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2287 -------------------P---MVEEG--------------------EPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred -------------------c---ccccC--------------------CCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 0 00011 12345889999999999999999999999987
Q ss_pred HhcC--CcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC----CCCcccHHH
Q psy5584 1401 FSRG--HTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLD----SKDFLTYQD 1474 (2014)
Q Consensus 1401 ~~~~--~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d----~dG~Is~eE 1474 (2014)
.... .+.+.+..+|+.+|. +.-+++++++.. .|+.++++=.+..|-..+|+. ..+.++|.+
T Consensus 2325 ~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~------------~ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~d 2391 (2399)
T KOG0040|consen 2325 KETENILSSEEIEDAFRALDA-GKPYVTKEELYQ------------NLTREQAEFCMSKMKPYAETSSGRSDQVALDYKD 2391 (2399)
T ss_pred cccccccchHHHHHHHHHhhc-CCccccHHHHHh------------cCCHHHHHHHHHHhhhhcccccCCCccccccHHH
Confidence 5432 455689999999999 888999998764 557777777777777777774 346799999
Q ss_pred HHHHH
Q psy5584 1475 FKLMM 1479 (2014)
Q Consensus 1475 F~~~l 1479 (2014)
|...+
T Consensus 2392 fv~sl 2396 (2399)
T KOG0040|consen 2392 FVNSL 2396 (2399)
T ss_pred HHHHH
Confidence 98765
No 162
>COG2717 Predicted membrane protein [Function unknown]
Probab=97.53 E-value=0.0015 Score=73.11 Aligned_cols=126 Identities=16% Similarity=0.180 Sum_probs=86.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccccccccccccCCCCCCCcceeeeccccchhHHHHHHHHH
Q psy5584 1582 IPLDSHIQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGITFWLFQTITGITGVLLFVIM 1661 (2014)
Q Consensus 1582 i~~d~~~~~Hr~ig~~~~~~~~lH~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~g~tGii~~~~l 1661 (2014)
.-....+.+-|.+|.++++++++|...|++-..... ++-.+.+ .........|++++++|
T Consensus 68 ~~~~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~------~~~~~~d--------------~~~rpyitiG~iaflll 127 (209)
T COG2717 68 LKQPKLIRIRRALGLWAFFYALLHFTAYLVLDLGLD------LALLGLD--------------LLKRPYITIGMIAFLLL 127 (209)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------HHHhhHH--------------HHHhHHHHHHHHHHHHH
Confidence 444567789999999999999999998876433211 0000000 00112234699999999
Q ss_pred HHHHHhhhHHHhhhhhhHHHHHHHHHHHHHHHHHhhccccccCCCcchhhhhHH-HHHHHHHHhhhhe
Q psy5584 1662 VLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHGLARITGPPRFWIYFIGP-GVVFILDKVVSLR 1728 (2014)
Q Consensus 1662 ~im~v~S~~~iRr~~Ye~F~~~H~l~~~~~vl~~~H~~~~l~~~p~~~~~~~~~-~~l~~~drl~r~~ 1728 (2014)
+.|.++|..++||+--..|..+|.+..+++++..+|..... .....++.+++. .+.+.+.|+.+.+
T Consensus 128 ~pLalTS~k~~~rrlG~rW~~LHrLvYl~~~L~~lH~~~s~-K~~~~~~vlY~ii~~~lll~R~~k~~ 194 (209)
T COG2717 128 IPLALTSFKWVRRRLGKRWKKLHRLVYLALILGALHYLWSV-KIDMPEPVLYAIIFAVLLLLRVTKTR 194 (209)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888779999999999999999999985321 112233333333 2456667766643
No 163
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.50 E-value=0.00027 Score=69.59 Aligned_cols=66 Identities=17% Similarity=0.360 Sum_probs=52.6
Q ss_pred HHHHHHHhhhcCC--CCCeeeHHHHHHHHHH-HHHhhcCCCCC----HHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy5584 1408 DKLRIIFDMCDND--RNGVIDKGELAEMLRS-LVEMARTTSLT----DSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMR 1480 (2014)
Q Consensus 1408 e~l~~~F~~~D~D--gdG~Is~eEf~~~L~~-l~~~~~~~~ls----~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~ 1480 (2014)
..+...|+.|+.. .+|.|+.+||+.++.. ++. .++ +++ ++.+|+.+|.|++|.|+|+||+.++.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~-----~~t~~~~~~~----v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPN-----FLKKEKNQKA----IDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhH-----hhccCCCHHH----HHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 3577889999866 4899999999999974 444 344 555 45588899999999999999999987
Q ss_pred hC
Q psy5584 1481 DY 1482 (2014)
Q Consensus 1481 ~~ 1482 (2014)
..
T Consensus 79 ~~ 80 (88)
T cd05030 79 KV 80 (88)
T ss_pred HH
Confidence 53
No 164
>KOG0033|consensus
Probab=97.46 E-value=4.5e-05 Score=84.98 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=54.0
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH-----HHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK-----LEHFFR 1167 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~-----L~h~~~ 1167 (2014)
+||++++...++.+|+.+.++++.+.|+.||+++|+|+++||+.+|.+|+ |+|+|.
T Consensus 210 ~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi 270 (355)
T KOG0033|consen 210 PPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALKHPWI 270 (355)
T ss_pred CCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhCCchh
Confidence 79999999999999999999999999999999999999999999999996 899887
No 165
>KOG0041|consensus
Probab=97.45 E-value=0.00026 Score=76.36 Aligned_cols=66 Identities=26% Similarity=0.441 Sum_probs=54.8
Q ss_pred HHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy5584 1408 DKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDY 1482 (2014)
Q Consensus 1408 e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~ 1482 (2014)
+.+..+|+.||.|.||+|+..|++.||..++. + .-+ --.+.|++++|.|.||+|||-||+-++++-
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga-----p--QTH--L~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGA-----P--QTH--LGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCC-----c--hhh--HHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 45888999999999999999999999998764 2 222 234568899999999999999999988763
No 166
>KOG0041|consensus
Probab=97.40 E-value=0.00092 Score=72.21 Aligned_cols=39 Identities=33% Similarity=0.441 Sum_probs=30.1
Q ss_pred hCCCChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhc
Q psy5584 1365 LGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSR 1403 (2014)
Q Consensus 1365 Lg~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~ 1403 (2014)
||.+-+.--++.++..+|.|.||+|||.||+-+...-..
T Consensus 128 LgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 128 LGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred hCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 445555566888999999999999999999877765433
No 167
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.39 E-value=0.00018 Score=54.73 Aligned_cols=27 Identities=37% Similarity=0.577 Sum_probs=19.9
Q ss_pred HHHHHhhhcCCCCCeeeHHHHHHHHHH
Q psy5584 1410 LRIIFDMCDNDRNGVIDKGELAEMLRS 1436 (2014)
Q Consensus 1410 l~~~F~~~D~DgdG~Is~eEf~~~L~~ 1436 (2014)
++.+|+.+|+|+||+|+.+||..++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 567777777777777777777777764
No 168
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.29 E-value=0.00034 Score=53.32 Aligned_cols=26 Identities=42% Similarity=0.813 Sum_probs=15.2
Q ss_pred HHHHHHhhcCCCCcceeHHHHHHHHH
Q psy5584 1215 VRMMFNIVDKDGDGRISFQEFLDTVV 1240 (2014)
Q Consensus 1215 l~~lF~~~D~dgdG~Is~~EF~~~l~ 1240 (2014)
++++|+.+|+|+||+|+++||..++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 45556666666666666666655554
No 169
>PF14658 EF-hand_9: EF-hand domain
Probab=97.10 E-value=0.0013 Score=59.73 Aligned_cols=62 Identities=21% Similarity=0.463 Sum_probs=52.1
Q ss_pred HHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCC-CcccHHHHHHHHHh
Q psy5584 1412 IIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSK-DFLTYQDFKLMMRD 1481 (2014)
Q Consensus 1412 ~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~d-G~Is~eEF~~~l~~ 1481 (2014)
.+|++||.++.|.|...++..+|+.++. . ..++.++++ +.+++|+++. |.|++++|+..|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~---~-~p~e~~Lq~----l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTG---R-SPEESELQD----LINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcC---C-CCcHHHHHH----HHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999998763 1 345666655 6677999987 99999999999975
No 170
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.02 E-value=0.0026 Score=62.08 Aligned_cols=68 Identities=12% Similarity=0.280 Sum_probs=50.9
Q ss_pred HHHHHHhhhcCCCCCeeeHHHHHHHHHH-HHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy5584 1409 KLRIIFDMCDNDRNGVIDKGELAEMLRS-LVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDY 1482 (2014)
Q Consensus 1409 ~l~~~F~~~D~DgdG~Is~eEf~~~L~~-l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~ 1482 (2014)
.+-..|+.|- .+.|.+++.||+.++.. +...... .-+++ .++.+|+.+|.|+||.|+|+||..++-..
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~-~~d~~----~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKN-QNDPM----AVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcC-CCCHH----HHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4667888887 34569999999999976 3322222 22344 36669999999999999999999988653
No 171
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.99 E-value=0.0019 Score=63.59 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCC--CCcceeHHHHHHHHHH-hcCCCC----HHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q psy5584 1213 VFVRMMFNIVDKD--GDGRISFQEFLDTVVL-FSRGHT----EDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1278 (2014)
Q Consensus 1213 ~~l~~lF~~~D~d--gdG~Is~~EF~~~l~~-l~~~~~----eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~ 1278 (2014)
..+-.+|..++.. .+|.|+.+||..++.. ++...+ ++++..+|+.+|.|++|.|+++||..++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4577889999866 4899999999999974 444444 8999999999999999999999999988764
No 172
>PF14658 EF-hand_9: EF-hand domain
Probab=96.89 E-value=0.003 Score=57.43 Aligned_cols=61 Identities=15% Similarity=0.357 Sum_probs=57.4
Q ss_pred HHHHhhcCCCCcceeHHHHHHHHHHhcC-CCCHHHHHHHHHhccCCCC-CcccHHHHHHHHHH
Q psy5584 1217 MMFNIVDKDGDGRISFQEFLDTVVLFSR-GHTEDKLRIIFDMCDNDRN-GVIDKGELAEMLRS 1277 (2014)
Q Consensus 1217 ~lF~~~D~dgdG~Is~~EF~~~l~~l~~-~~~eeel~~lF~~~D~D~d-G~Is~eEF~~~l~~ 1277 (2014)
.+|..+|.++.|.|...++...|+..+. ..++.+++.+.+.+|.++. |.|+++.|...|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999887 8899999999999999999 99999999999865
No 173
>KOG4065|consensus
Probab=96.86 E-value=0.003 Score=62.15 Aligned_cols=71 Identities=20% Similarity=0.321 Sum_probs=57.7
Q ss_pred HHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHH--hhcCC---CCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Q psy5584 1408 DKLRIIFDMCDNDRNGVIDKGELAEMLRSLVE--MARTT---SLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLM 1478 (2014)
Q Consensus 1408 e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~--~~~~~---~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~ 1478 (2014)
+--...|+|.|.|++|.|+--|+..++..... .++.. -.++.+++.+|+.+++.-|.|+||.|+|-||.+.
T Consensus 67 qlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 67 QLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 33445799999999999999999999986543 22211 2467889999999999999999999999999864
No 174
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.85 E-value=0.0056 Score=59.78 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=31.6
Q ss_pred hCCCChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHh
Q psy5584 1365 LGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFS 1402 (2014)
Q Consensus 1365 Lg~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~ 1402 (2014)
++-..++..++++++..|.|+||.|+|+||+..+..+.
T Consensus 41 l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 41 LKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 33344677899999999999999999999999887653
No 175
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.73 E-value=0.0014 Score=50.90 Aligned_cols=29 Identities=52% Similarity=0.759 Sum_probs=24.3
Q ss_pred HHHHHHhhhcCCCCCeeeHHHHHHHHH-HH
Q psy5584 1409 KLRIIFDMCDNDRNGVIDKGELAEMLR-SL 1437 (2014)
Q Consensus 1409 ~l~~~F~~~D~DgdG~Is~eEf~~~L~-~l 1437 (2014)
+++.+|+.+|+|+||+|+.+||..+|+ ++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~l 30 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSL 30 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence 478899999999999999999999988 44
No 176
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.18 Score=59.17 Aligned_cols=199 Identities=12% Similarity=0.118 Sum_probs=128.5
Q ss_pred eeeEeEEEEEEEcCCCEEEEEEecCCCCc----ccCCCEEEEEecCCCC--------------------CcccccccCCC
Q psy5584 1730 KYMALDILETELLPSDVIKIRFYRPPNFT----YHSGQWVRLACTAFKN--------------------AAYHSFTLTSA 1785 (2014)
Q Consensus 1730 ~~~~~~v~~v~~l~~~v~~l~~~~p~~~~----~~pGQyv~L~~p~~~~--------------------~e~HPFTIaS~ 1785 (2014)
..+.++|+.++.+++++++++|.-+.... ...+||+.|.+|..+. .-.++|||.+.
T Consensus 16 ~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~ 95 (265)
T COG2375 16 RLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAV 95 (265)
T ss_pred cceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeee
Confidence 45678999999999999999999886333 3444599999986432 12688999765
Q ss_pred C-CCCe--EEEEEE-ecCCccHHHHhhhccCCCCCCCCCcEEEEECCCCCCCCCcCCCceEEEEEeccchhhHHHHHHHH
Q psy5584 1786 P-HENF--LSCHIK-AQGPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDL 1861 (2014)
Q Consensus 1786 p-~~~~--l~l~Ir-~~G~~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlIaGGiGITP~lsiL~~l 1861 (2014)
. ..++ +.|++- ..|..+..-. .+ .++.++.|-||-|...+ ...++..+|||==+++-.+..||.+|
T Consensus 96 d~~~~e~~vDfVlH~~~gpas~WA~-~a--------~~GD~l~i~GP~g~~~p-~~~~~~~lLigDetAlPAIa~iLE~l 165 (265)
T COG2375 96 DAAAGELDVDFVLHGEGGPASRWAR-TA--------QPGDTLTIMGPRGSLVP-PEAADWYLLIGDETALPAIARILETL 165 (265)
T ss_pred cccccEEEEEEEEcCCCCcchhhHh-hC--------CCCCEEEEeCCCCCCCC-CCCcceEEEeccccchHHHHHHHHhC
Confidence 3 3333 455555 3344333322 22 34459999999999654 35789999999999999999999987
Q ss_pred HhccCCCCCCCcCccEEEEEEEeCCcccHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCCCcchhhhhhhhcccccccc
Q psy5584 1862 VFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSK 1941 (2014)
Q Consensus 1862 ~~~~~~~~~~~~~~~kV~liW~~R~~~~l~w~~~~L~~l~~~~~~~~l~v~iyvT~~~~~~d~~~~~~~~~e~~~~~~~~ 1941 (2014)
-.. .+++.+-.+++..+.. .+ .....++++-....
T Consensus 166 p~~-----------~~~~a~lev~d~ad~~-------~l---~~~~~l~~~Wl~r~------------------------ 200 (265)
T COG2375 166 PAD-----------TPAEAFLEVDDAADRD-------EL---PSPDDLELEWLARD------------------------ 200 (265)
T ss_pred CCC-----------CceEEEEEeCChHHhh-------cc---CCCCceeEEEecCC------------------------
Confidence 432 2445666677655531 11 12234455443332
Q ss_pred cccccCcccccccCCCCHHHHHHHHHHhCC-CCCeEEEEEeCChhhHHHHHHHHHhh
Q psy5584 1942 SSMFTGLKAVNHFGRPDMSSFLKFVQKKHS-YVSKIGVFSCGPRPLTKSIMSACEEV 1997 (2014)
Q Consensus 1942 ~~~~tgl~~~~~~GRPd~~~il~~l~~~~~-~~~~v~V~vCGP~~m~~~vr~a~~~~ 1997 (2014)
+.| ..+++........ ..+...|++.|-.++++.+|+.++..
T Consensus 201 -------------~~~-~~~ll~~a~~~~~~P~~~~~vwiagE~~~v~~~Rk~L~~e 243 (265)
T COG2375 201 -------------DAP-TEQLLAAALAQAALPAGDYYVWIAGEASAVKAIRKFLRNE 243 (265)
T ss_pred -------------Ccc-chHHHHHHHhcccCCCCceEEEEeccHHHHHHHHHHHhhh
Confidence 233 2233333222222 11357899999999999999999874
No 177
>KOG2562|consensus
Probab=96.64 E-value=0.017 Score=70.50 Aligned_cols=83 Identities=17% Similarity=0.277 Sum_probs=73.5
Q ss_pred cCcCHHHHHHHhCCCCcHHHHHHHHH----hhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHH
Q psy5584 1195 TSLSRAEFASALGMKSDAVFVRMMFN----IVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGE 1270 (2014)
Q Consensus 1195 ~~Ls~~El~~~L~~~~~~~~l~~lF~----~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eE 1270 (2014)
+.|++++|++.-.-..+.-.+.++|. ..-..++|.++|++|..++..+....+...++..|+.+|.+++|.|+..|
T Consensus 293 ~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~e 372 (493)
T KOG2562|consen 293 GLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNE 372 (493)
T ss_pred cccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHH
Confidence 89999999987777777888999999 34455789999999999999988888889999999999999999999999
Q ss_pred HHHHHHH
Q psy5584 1271 LAEMLRS 1277 (2014)
Q Consensus 1271 F~~~l~~ 1277 (2014)
+.-++..
T Consensus 373 l~~fyee 379 (493)
T KOG2562|consen 373 LRYFYEE 379 (493)
T ss_pred HHHHHHH
Confidence 9887754
No 178
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.50 E-value=0.0055 Score=76.47 Aligned_cols=61 Identities=28% Similarity=0.386 Sum_probs=53.4
Q ss_pred HhCCCCcHHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q psy5584 1205 ALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1278 (2014)
Q Consensus 1205 ~L~~~~~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~ 1278 (2014)
..|...-...++.+|..+|.|+||.|+.+||.. ...+|+.+|.|+||.|+++||...+...
T Consensus 326 ~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 326 LEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 446666778899999999999999999999942 4778999999999999999999998764
No 179
>KOG4666|consensus
Probab=96.48 E-value=0.0017 Score=74.96 Aligned_cols=107 Identities=15% Similarity=0.188 Sum_probs=84.2
Q ss_pred HHhCCccCCcccc-ccc--CcccccccccCHHHHHhhhCCCCChHHHHHHHHhhccCCCCcccHHHHHhhhhhccCC-CH
Q psy5584 29 LTFGLKPGEKRRR-DDE--TGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRG-HT 104 (2014)
Q Consensus 29 ~~~~l~~~~~~~~-~~y--~~~v~ps~~i~~~EF~~al~~rf~~s~~~~~f~~fD~d~~g~I~f~Efi~~~~~l~~~-~~ 104 (2014)
+..+|.+.+-.-. +.| -+....+..|--.||+..+..+.++ .+..+|.+||++++|.++|+|.+..++.++++ ..
T Consensus 216 r~lkL~~~gl~k~ld~y~~var~~kg~~igi~efa~~l~vpvsd-~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t 294 (412)
T KOG4666|consen 216 RVLKLPLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNLRVPVSD-KLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVT 294 (412)
T ss_pred hccCCChHHHHHHHhhHHHHHHhccCCCcceeEeeeeeecchhh-hhhhhhheecCCCCCcccHHHHhhhheeeeCCCCc
Confidence 4444443332221 344 4456666777779999998888774 77888999999999999999999999999977 56
Q ss_pred HHHHHHHHhhccCCCCccccHHHHHHHHHHHH
Q psy5584 105 EDKLRIIFDMCDNDRNGVIDKGELAEMLRSLV 136 (2014)
Q Consensus 105 ~d~l~~~f~~~D~d~~G~Is~~El~~~L~dL~ 136 (2014)
.+-|+.+|++||.+.||.+..+++.-+++..+
T Consensus 295 ~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l 326 (412)
T KOG4666|consen 295 PVIIQYAFKRFSVAEDGISGEHILSLILQVVL 326 (412)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhc
Confidence 67788889999999999999999988886664
No 180
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.39 E-value=0.012 Score=73.61 Aligned_cols=60 Identities=28% Similarity=0.399 Sum_probs=52.8
Q ss_pred hCCCChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHH
Q psy5584 1365 LGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1437 (2014)
Q Consensus 1365 Lg~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l 1437 (2014)
.|...-...+..+|+.+|.|+||.|+.+||+. ...+|+.+|.|+||.|+.+||..++...
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 35666778899999999999999999999952 4678999999999999999999998854
No 181
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.28 E-value=0.011 Score=50.73 Aligned_cols=49 Identities=20% Similarity=0.495 Sum_probs=40.0
Q ss_pred ceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHH
Q psy5584 1229 RISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1277 (2014)
Q Consensus 1229 ~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~ 1277 (2014)
++||+|...+|+.+...+.++-+..+|+.+|.+++|.+..+||..+++.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999998764
No 182
>KOG0751|consensus
Probab=96.26 E-value=0.048 Score=66.47 Aligned_cols=99 Identities=17% Similarity=0.360 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcH------HHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCC
Q psy5584 1371 AVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTE------DKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTT 1444 (2014)
Q Consensus 1371 ~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~------e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~ 1444 (2014)
+......|..+|+.++|.+|+++|.+.+....-.... +-++..| -.+..-.++..||.+++.++..
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~r~~ny~~f~Q~lh~~~~----- 178 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRKRHLNYAEFTQFLHEFQL----- 178 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHHHhccHHHHHHHHHHHHH-----
Confidence 3446777888888888888888888877654322111 1122222 2334445778888888876543
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCccc
Q psy5584 1445 SLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYKGD 1485 (2014)
Q Consensus 1445 ~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~~~ 1485 (2014)
|+ .++.|++-|..++|.||--+|...|......
T Consensus 179 ----E~----~~qafr~~d~~~ng~is~Ldfq~imvt~~~h 211 (694)
T KOG0751|consen 179 ----EH----AEQAFREKDKAKNGFISVLDFQDIMVTIRIH 211 (694)
T ss_pred ----HH----HHHHHHHhcccCCCeeeeechHhhhhhhhhh
Confidence 22 3447888999999999999999988776544
No 183
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.24 E-value=0.0055 Score=45.05 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=18.2
Q ss_pred HHHHHhhhcCCCCCeeeHHHHHHHH
Q psy5584 1410 LRIIFDMCDNDRNGVIDKGELAEML 1434 (2014)
Q Consensus 1410 l~~~F~~~D~DgdG~Is~eEf~~~L 1434 (2014)
++.+|+.+|.|+||.||.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3567777888888888888877653
No 184
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.09 E-value=0.0073 Score=44.41 Aligned_cols=23 Identities=48% Similarity=0.830 Sum_probs=13.6
Q ss_pred HHHHHhhcCCCCcceeHHHHHHH
Q psy5584 1216 RMMFNIVDKDGDGRISFQEFLDT 1238 (2014)
Q Consensus 1216 ~~lF~~~D~dgdG~Is~~EF~~~ 1238 (2014)
+++|..+|.|+||.|+++||..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45566666666666666666553
No 185
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.02 E-value=0.018 Score=49.51 Aligned_cols=50 Identities=22% Similarity=0.511 Sum_probs=38.7
Q ss_pred ceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHH
Q psy5584 1388 RISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1437 (2014)
Q Consensus 1388 ~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l 1437 (2014)
+++|+|...++..+.-...++-+..+|+.+|++++|.+..+||..+.+.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47888988888888777888889999999999999999999999888753
No 186
>KOG0032|consensus
Probab=95.97 E-value=0.0035 Score=78.78 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=54.6
Q ss_pred EEeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH-----HHHHHHH
Q psy5584 1111 VLEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK-----LEHFFRE 1168 (2014)
Q Consensus 1111 vlPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~-----L~h~~~~ 1168 (2014)
+.||+++++.+.+.+|..+.+.|..++|+.+|..+|+||+++|..++++|+ |+|+|..
T Consensus 235 ~~PF~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~HpWi~ 297 (382)
T KOG0032|consen 235 VPPFWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQHPWIK 297 (382)
T ss_pred CCCCcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhcCcccc
Confidence 569999999999999999999999999999999999999999999999984 8998863
No 187
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.66 E-value=0.038 Score=56.02 Aligned_cols=64 Identities=20% Similarity=0.380 Sum_probs=51.9
Q ss_pred cHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy5584 1406 TEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRD 1481 (2014)
Q Consensus 1406 ~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~ 1481 (2014)
...+...+|+..|. ++|.|+-++.+.++... +|+.+.+.+ |+..+|.|+||+++++||+-.|.-
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S-------~L~~~~L~~----IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKS-------GLPRDVLAQ----IWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT-------TSSHHHHHH----HHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc-------CCCHHHHHH----HHhhhcCCCCCcCCHHHHHHHHHH
Confidence 34568889999985 68999999999988742 788887666 777899999999999999988763
No 188
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.62 E-value=0.017 Score=44.89 Aligned_cols=26 Identities=42% Similarity=0.731 Sum_probs=13.5
Q ss_pred HHHHHHhhcCCCCcceeHHHHHHHHH
Q psy5584 1215 VRMMFNIVDKDGDGRISFQEFLDTVV 1240 (2014)
Q Consensus 1215 l~~lF~~~D~dgdG~Is~~EF~~~l~ 1240 (2014)
++.+|..+|+|+||+|+.+||..++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 34555555555555555555555554
No 189
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.54 E-value=0.013 Score=60.49 Aligned_cols=65 Identities=22% Similarity=0.277 Sum_probs=48.2
Q ss_pred CCCCcHHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHH
Q psy5584 1207 GMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAE 1273 (2014)
Q Consensus 1207 ~~~~~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~ 1273 (2014)
........+.-.|..+|.|+||.|+..|+..+...+ ...+.-++..|+.+|.|+||.||..|+..
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344556778999999999999999999998876644 34455688999999999999999999864
No 190
>KOG0040|consensus
Probab=95.44 E-value=0.079 Score=71.74 Aligned_cols=65 Identities=25% Similarity=0.421 Sum_probs=57.5
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCC-------CHHHHHHHHHhccCCCCCcccHHHHHHHHHH
Q psy5584 1213 VFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGH-------TEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1277 (2014)
Q Consensus 1213 ~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~-------~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~ 1277 (2014)
.+..-||..||++.+|.+++++|..+|+.++... ++.+++.+....|++.+|+|+.+|...+|-+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 4567799999999999999999999999977654 3448999999999999999999999998855
No 191
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.44 E-value=0.051 Score=55.13 Aligned_cols=64 Identities=25% Similarity=0.353 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q psy5584 1212 AVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1278 (2014)
Q Consensus 1212 ~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~ 1278 (2014)
......+|..+|. ++|.|+-++...++.. .+++.+.+..+|...|.|++|+++++||.-+++-.
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~--S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMK--SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHH--TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHH--cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 3457889999985 6899999999988764 46788999999999999999999999999998754
No 192
>KOG0599|consensus
Probab=94.94 E-value=0.012 Score=67.20 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=52.3
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH-----HHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK-----LEHFFR 1167 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~-----L~h~~~ 1167 (2014)
.|||-...--.+..|+++++.|.+++|..+|.+.||||.++|..|+.+|+ |.|+|-
T Consensus 226 pPFwHRkQmlMLR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~LaHpff 286 (411)
T KOG0599|consen 226 PPFWHRKQMLMLRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEALAHPFF 286 (411)
T ss_pred CchhHHHHHHHHHHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcChHH
Confidence 69999999889999999999999999999999999999999999999995 888665
No 193
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=94.45 E-value=0.021 Score=59.03 Aligned_cols=61 Identities=16% Similarity=0.335 Sum_probs=35.6
Q ss_pred cHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q psy5584 1406 TEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKL 1477 (2014)
Q Consensus 1406 ~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~ 1477 (2014)
....+.-.|..+|.|+||.|+..|++.+...+. + .+.-+..+++..|.|+||.||..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~---------~--~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM---------P--PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS---------T--TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh---------h--hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344566678888888888888888777655221 1 122345577778888888888888764
No 194
>KOG0604|consensus
Probab=94.33 E-value=0.01 Score=68.84 Aligned_cols=57 Identities=12% Similarity=0.037 Sum_probs=49.9
Q ss_pred EeecChh----HHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH-----HHHHHHH
Q psy5584 1112 LEFDSLA----ARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK-----LEHFFRE 1168 (2014)
Q Consensus 1112 lPF~~~~----~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~-----L~h~~~~ 1168 (2014)
.||++.. .-....+|.++.+.|..++|..||+++||+|+++|..+|.+|+ +.|+|..
T Consensus 261 PPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~hpwi~ 326 (400)
T KOG0604|consen 261 PPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDHPWIN 326 (400)
T ss_pred CcccccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcCchhc
Confidence 5888776 3456789999999999999999999999999999999999994 7888873
No 195
>KOG0169|consensus
Probab=93.46 E-value=0.78 Score=60.20 Aligned_cols=106 Identities=13% Similarity=0.214 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHH
Q psy5584 1371 AVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQ 1450 (2014)
Q Consensus 1371 ~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e 1450 (2014)
..-+..+|++.|.-+++++..++|..+........ ++..+|..+-.+ .+.++.+++.+++.... +....+.+.
T Consensus 171 ~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q---~e~~~~~~~ 243 (746)
T KOG0169|consen 171 ESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQ---GEDGATLDE 243 (746)
T ss_pred HHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhc---ccccccHHH
Confidence 34466677777778899999999998877664432 688888877544 88999999999998753 222667777
Q ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCc
Q psy5584 1451 VTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYK 1483 (2014)
Q Consensus 1451 ~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~ 1483 (2014)
++++++..=..-..-..+.++++.|..+|....
T Consensus 244 ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~ 276 (746)
T KOG0169|consen 244 AEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPD 276 (746)
T ss_pred HHHHHHHhhhhhhccccceecHHHHHHHhcCcc
Confidence 777665432222334567799999999987644
No 196
>KOG0046|consensus
Probab=93.39 E-value=0.24 Score=61.50 Aligned_cols=74 Identities=19% Similarity=0.345 Sum_probs=64.3
Q ss_pred ccCcCHHHHHHHhCCCCcHHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCC---CCHHHHHHHHHhccCCCCCcccHHH
Q psy5584 1194 RTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRG---HTEDKLRIIFDMCDNDRNGVIDKGE 1270 (2014)
Q Consensus 1194 ~~~Ls~~El~~~L~~~~~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~---~~eeel~~lF~~~D~D~dG~Is~eE 1270 (2014)
+..+|.+|+.. +++-|..+| |++|+|+..|+..++.+.... ..+++++.+....+.|.+|.|+++|
T Consensus 10 ~~~~tq~El~~----------l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~ 78 (627)
T KOG0046|consen 10 QSQLTQEELRE----------LKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEE 78 (627)
T ss_pred cccccHHHHHH----------HHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHH
Confidence 36788888855 889999999 999999999999999885443 3578999999999999999999999
Q ss_pred HHHHHHHH
Q psy5584 1271 LAEMLRSL 1278 (2014)
Q Consensus 1271 F~~~l~~~ 1278 (2014)
|...+..+
T Consensus 79 f~~~~~~l 86 (627)
T KOG0046|consen 79 FVGIFLNL 86 (627)
T ss_pred HHHHHHhh
Confidence 99977654
No 197
>KOG0046|consensus
Probab=93.27 E-value=0.16 Score=62.93 Aligned_cols=67 Identities=21% Similarity=0.373 Sum_probs=54.0
Q ss_pred HHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy5584 1409 KLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDY 1482 (2014)
Q Consensus 1409 ~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~ 1482 (2014)
+++..|...| |++|+++..|+..++..... .+ ....++.++.++...+.|.+|+|+|+||+..+...
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~-----~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKL-----PL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcc-----cc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 4777899999 99999999999999987653 22 33344557778899999999999999999977654
No 198
>KOG4065|consensus
Probab=92.07 E-value=0.39 Score=47.88 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=21.4
Q ss_pred HHHHhccCCCCCcccHHHHHHHHHHH
Q psy5584 1253 IIFDMCDNDRNGVIDKGELAEMLRSL 1278 (2014)
Q Consensus 1253 ~lF~~~D~D~dG~Is~eEF~~~l~~~ 1278 (2014)
..|+|.|.|++|.|+--|+.+++...
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~ 96 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHT 96 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHH
Confidence 46888999999999988888887664
No 199
>KOG1029|consensus
Probab=91.73 E-value=0.75 Score=59.27 Aligned_cols=61 Identities=23% Similarity=0.402 Sum_probs=51.1
Q ss_pred HHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy5584 1409 KLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMR 1480 (2014)
Q Consensus 1409 ~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~ 1480 (2014)
+.+.+|+..|+..+|++|-..-+.+|... +|+..++.. |+...|.|+||+++-+||+-.|.
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS-------~Lpq~~LA~----IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQS-------GLPQNQLAH----IWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhc-------CCchhhHhh----heeeeccCCCCcccHHHHHHHHH
Confidence 56889999999999999999988887632 677776555 77789999999999999987664
No 200
>KOG0169|consensus
Probab=91.51 E-value=1.7 Score=57.11 Aligned_cols=66 Identities=26% Similarity=0.503 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHH
Q psy5584 1212 AVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1277 (2014)
Q Consensus 1212 ~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~ 1277 (2014)
...+..+|...|++++|.+++.|-..++..+...+.+..++.+|+..|.-+++++..+|+..+...
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999999999999999999987654
No 201
>KOG0607|consensus
Probab=90.88 E-value=0.086 Score=61.78 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH-----HHHHHHH
Q psy5584 1119 ARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK-----LEHFFRE 1168 (2014)
Q Consensus 1119 ~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~-----L~h~~~~ 1168 (2014)
....|.+|++++++|..+.|..||.++||++.++|.++..+|+ ++|+|.+
T Consensus 311 Q~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vlnhPw~~ 365 (463)
T KOG0607|consen 311 QNKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLNHPWVQ 365 (463)
T ss_pred HHHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccCCcccc
Confidence 5789999999999999999999999999999999999999994 7787764
No 202
>KOG4347|consensus
Probab=89.91 E-value=0.24 Score=63.35 Aligned_cols=60 Identities=18% Similarity=0.571 Sum_probs=55.9
Q ss_pred ChHHHHHHHHhhccCCCCcccHHHHHhhhhhccCCCHHHHHHHHHhhccCCCCccccHHHH
Q psy5584 68 DAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGEL 128 (2014)
Q Consensus 68 ~~s~~~~~f~~fD~d~~g~I~f~Efi~~~~~l~~~~~~d~l~~~f~~~D~d~~G~Is~~El 128 (2014)
...++.++|.++|.+++|.++|++++.+++.++.+...+++...|++||++.+ ...++|.
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 34688999999999999999999999999999999999999999999999999 8777776
No 203
>KOG0615|consensus
Probab=89.45 E-value=0.075 Score=64.62 Aligned_cols=57 Identities=7% Similarity=-0.060 Sum_probs=51.6
Q ss_pred EeecChhHHH-HHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH-----HHHHHHH
Q psy5584 1112 LEFDSLAARK-KFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK-----LEHFFRE 1168 (2014)
Q Consensus 1112 lPF~~~~~~~-~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~-----L~h~~~~ 1168 (2014)
+||.++.... ....|.++.+.|..+.|..||+++.+||+.||..||.+|. |+|+|..
T Consensus 379 pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~hpW~~ 441 (475)
T KOG0615|consen 379 PPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALNHPWFK 441 (475)
T ss_pred CCcccccCCccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcChhhh
Confidence 7898887555 8899999999999999999999999999999999999984 9998874
No 204
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=89.27 E-value=0.34 Score=35.60 Aligned_cols=26 Identities=35% Similarity=0.644 Sum_probs=17.6
Q ss_pred HHHHHhhhcCCCCCeeeHHHHHHHHH
Q psy5584 1410 LRIIFDMCDNDRNGVIDKGELAEMLR 1435 (2014)
Q Consensus 1410 l~~~F~~~D~DgdG~Is~eEf~~~L~ 1435 (2014)
++.+|+.+|.+++|.|+.+||..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45566777777777777777766665
No 205
>KOG0610|consensus
Probab=88.95 E-value=0.21 Score=60.97 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=45.5
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK 1161 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~ 1161 (2014)
-||.|.+..+++.+|+.+.+.|...+ .+|..++|||+++|.|||.+|+
T Consensus 333 TPFKG~~~~~Tl~NIv~~~l~Fp~~~--~vs~~akDLIr~LLvKdP~kRl 380 (459)
T KOG0610|consen 333 TPFKGSNNKETLRNIVGQPLKFPEEP--EVSSAAKDLIRKLLVKDPSKRL 380 (459)
T ss_pred CCcCCCCchhhHHHHhcCCCcCCCCC--cchhHHHHHHHHHhccChhhhh
Confidence 39999999999999999999999887 8999999999999999999994
No 206
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=88.84 E-value=0.43 Score=35.08 Aligned_cols=26 Identities=35% Similarity=0.644 Sum_probs=14.8
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHH
Q psy5584 1251 LRIIFDMCDNDRNGVIDKGELAEMLR 1276 (2014)
Q Consensus 1251 l~~lF~~~D~D~dG~Is~eEF~~~l~ 1276 (2014)
++.+|+.+|.|++|.|+++||..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34555666666666666666655543
No 207
>KOG3866|consensus
Probab=88.48 E-value=6.7 Score=45.90 Aligned_cols=96 Identities=11% Similarity=0.233 Sum_probs=63.0
Q ss_pred CCCChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHh-hcCC
Q psy5584 1366 GMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEM-ARTT 1444 (2014)
Q Consensus 1366 g~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~-~~~~ 1444 (2014)
+.+-+...++++|...|-- +-..| .-+.+|...|.|+||+++..|+..++..-.+. .+.
T Consensus 221 nhPGSkdQLkEVWEE~DgL-----dpn~f--------------dPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdp- 280 (442)
T KOG3866|consen 221 NHPGSKDQLKEVWEESDGL-----DPNQF--------------DPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDP- 280 (442)
T ss_pred CCCCcHHHHHHHHHHhcCC-----CcccC--------------CcchheeeeccCCcccccHHHHHHHHHHHHHHhcCC-
Confidence 3344667778888776641 11111 14567888999999999999998887753321 111
Q ss_pred CCCHHHH-------HHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy5584 1445 SLTDSQV-------TELIDGMFQDAGLDSKDFLTYQDFKLMMRD 1481 (2014)
Q Consensus 1445 ~ls~~e~-------~~li~~if~~~D~d~dG~Is~eEF~~~l~~ 1481 (2014)
.-.++++ -.+-+.+|+.+|.|.|-.||.+||++.-.+
T Consensus 281 kNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 281 KNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 1112222 234567899999999999999999985543
No 208
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=87.61 E-value=1.5 Score=45.84 Aligned_cols=89 Identities=13% Similarity=0.202 Sum_probs=50.5
Q ss_pred EEEEEEEcCCCEEEEEEecCC--CCc-ccCCCEEEEEecCCCCC---------------------cccccccCCC-CCCC
Q psy5584 1735 DILETELLPSDVIKIRFYRPP--NFT-YHSGQWVRLACTAFKNA---------------------AYHSFTLTSA-PHEN 1789 (2014)
Q Consensus 1735 ~v~~v~~l~~~v~~l~~~~p~--~~~-~~pGQyv~L~~p~~~~~---------------------e~HPFTIaS~-p~~~ 1789 (2014)
+|++++.+++++++|+|..+. .+. +.|||||.|.+|..+.. ..+.|||.+. |..+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 478899999999999999874 333 57999999999975422 3577999876 3456
Q ss_pred eEEEEEEecCC---ccHHHHhhhccCCCCCCCCCcEEEEECCCCCC
Q psy5584 1790 FLSCHIKAQGP---WTWKLRNYFDPCNFNASEDQPKIRLEGPFGGG 1832 (2014)
Q Consensus 1790 ~l~l~Ir~~G~---~T~~L~~~~~~~~~~~~~~~~~v~IdGPyG~~ 1832 (2014)
+|.+-+-..|+ .+... ..++ ++..+.|-||-|.|
T Consensus 81 ~l~iDfv~Hg~~Gpas~WA-~~A~--------pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLHGDEGPASRWA-RSAR--------PGDRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE--SS--HHHHHH-HH----------TT-EEEEEEEE---
T ss_pred EEEEEEEECCCCCchHHHH-hhCC--------CCCEEEEeCCCCCC
Confidence 77665555543 33333 3333 34489999997764
No 209
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=86.46 E-value=6.1 Score=43.44 Aligned_cols=66 Identities=11% Similarity=0.186 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCC-------cHHHHHHHHhhhcCCCCCeeeHHHHHHHHH
Q psy5584 1369 SDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGH-------TEDKLRIIFDMCDNDRNGVIDKGELAEMLR 1435 (2014)
Q Consensus 1369 ~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~-------~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~ 1435 (2014)
....-.+++|+.+++.+.+.+++.|...++....... ..-+...++... +|.+|.+.+|+++.+..
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhcc
Confidence 3455688999999998889999999999887643321 223566666665 67899999999988764
No 210
>KOG3866|consensus
Probab=85.62 E-value=7.6 Score=45.46 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=38.0
Q ss_pred HHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHH
Q psy5584 1375 RMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1437 (2014)
Q Consensus 1375 ~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l 1437 (2014)
+-+++.+|.|+|..|+.+||+..-.......+.+.+.. .+..-.-+.+|++++=+.+
T Consensus 299 EHVMk~vDtNqDRlvtleEFL~~t~~kef~~p~e~WEt------l~q~~~yTeEEL~~fE~e~ 355 (442)
T KOG3866|consen 299 EHVMKQVDTNQDRLVTLEEFLNDTDNKEFNPPKEEWET------LGQKKVYTEEELQQFEREY 355 (442)
T ss_pred HHHHHhcccchhhhhhHHHHHhhhhhcccCCcchhhhh------hcccccccHHHHHHHHHHH
Confidence 44677889999999999999987665443344343332 2334456788887766544
No 211
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=85.23 E-value=2.6 Score=40.96 Aligned_cols=72 Identities=24% Similarity=0.290 Sum_probs=47.3
Q ss_pred HHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCcc
Q psy5584 1409 KLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYKG 1484 (2014)
Q Consensus 1409 ~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~~ 1484 (2014)
++..+|+.|-. +.+.||.++|.+.|+..- +...++.+++.+++...-........+.+|+++|..+|....+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ---~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N 72 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQ---GEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDEN 72 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTS---S-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTC
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHh---ccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcC
Confidence 36677888844 678888888888886421 1114567777665554322222235789999999999987653
No 212
>KOG0588|consensus
Probab=84.60 E-value=0.37 Score=62.07 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=50.0
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH-----HHHHHHHHHh
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK-----LEHFFREAYA 1171 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~-----L~h~~~~~F~ 1171 (2014)
|||++++-+.++++|.+|.+... ..||.+|.+|+++||..|+.+|+ ++|+|...+.
T Consensus 210 LPFdDdNir~LLlKV~~G~f~MP----s~Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP~l~g~~ 270 (786)
T KOG0588|consen 210 LPFDDDNIRVLLLKVQRGVFEMP----SNISSEAQDLLRRMLDVDPSTRITTEEILKHPFLSGYT 270 (786)
T ss_pred CCCCCccHHHHHHHHHcCcccCC----CcCCHHHHHHHHHHhccCccccccHHHHhhCchhhcCC
Confidence 89999999999999999988876 68999999999999999999984 8888876543
No 213
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=84.39 E-value=2.5 Score=41.83 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=39.2
Q ss_pred ccccccHHHHHHHhCCCChHHHHHHHHHHHccCC---CCceeHHHHHHHHHHHhc
Q psy5584 1352 MRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDG---DGRISFQEFLDTVVLFSR 1403 (2014)
Q Consensus 1352 ~~g~ls~~Ef~~~Lg~~~s~~~l~~lf~~~D~Dg---dG~Isf~EFl~~l~~~~~ 1403 (2014)
.+|.|.+++|.+|+||+.++++..++|+.+-+-. ...|+.+|+.+++..+..
T Consensus 41 ~dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 41 KDGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISD 95 (100)
T ss_dssp BTTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH-
T ss_pred cCCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhc
Confidence 4679999999999999999999999999887622 467899888888876644
No 214
>KOG0998|consensus
Probab=81.86 E-value=0.94 Score=62.63 Aligned_cols=236 Identities=21% Similarity=0.326 Sum_probs=149.6
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHHH
Q psy5584 1212 AVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQ 1291 (2014)
Q Consensus 1212 ~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~e 1291 (2014)
.......|..+|..++|.|+-.|-..++.. .+++...+-.++...|..+.|+++..+|...++..........++...
T Consensus 10 q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~--s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~ 87 (847)
T KOG0998|consen 10 QPLFDQYFKSADPQGDGRITGAEAVAFLSK--SGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKK 87 (847)
T ss_pred cchHHHhhhccCcccCCcccHHHhhhhhhc--cccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCccc
Confidence 355778999999999999999998777754 456778888999999999999999999999988654322222222211
Q ss_pred HHHHHHhhhcCh-H---------HHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCCCcccccccc
Q psy5584 1292 VTELIDGMFQSP-R---------ELML-------AKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRT 1354 (2014)
Q Consensus 1292 ~~~~i~~~~~~~-~---------~~~~-------~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d~~G~~~~~g 1354 (2014)
. .......+ . .... ..-.....-+.+...+|+ ...+. .|
T Consensus 88 ~---~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~-------s~~p~--------------~g 143 (847)
T KOG0998|consen 88 V---LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFR-------SLSPS--------------NG 143 (847)
T ss_pred c---ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHh-------ccCCC--------------CC
Confidence 1 00000000 0 0000 000001111122222221 11111 22
Q ss_pred cccHHHHHHHh-CCCChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHh---c---------------------------
Q psy5584 1355 SLSRAEFASAL-GMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFS---R--------------------------- 1403 (2014)
Q Consensus 1355 ~ls~~Ef~~~L-g~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~---~--------------------------- 1403 (2014)
.++-+..+..+ .-.+....+.+++...|.|.+|.++..||.-.+.... .
T Consensus 144 ~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~~p~P~~~p~~lIpps~~~~~~~~~ 223 (847)
T KOG0998|consen 144 LLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNSEPVPSRLPPSLIPPSKSELSANSS 223 (847)
T ss_pred ccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhcccCCCCccCCcccCCcchhcccccCc
Confidence 33333333333 4456677788999999999999999999955543211 1
Q ss_pred ----------------------------------------------------C---CcHHHHHHHHhhhcCCCCCeeeHH
Q psy5584 1404 ----------------------------------------------------G---HTEDKLRIIFDMCDNDRNGVIDKG 1428 (2014)
Q Consensus 1404 ----------------------------------------------------~---~~~e~l~~~F~~~D~DgdG~Is~e 1428 (2014)
. ....+...+|...|++.+|.|+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp~d~~~~~~if~q~d~~~dG~I~s~ 303 (847)
T KOG0998|consen 224 SKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSPSDKQKYSKIFSQVDKDNDGSISSN 303 (847)
T ss_pred ccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccChHHHHHHHHHHHhccccCCCccccc
Confidence 0 011246668999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCcc
Q psy5584 1429 ELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYKG 1484 (2014)
Q Consensus 1429 Ef~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~~ 1484 (2014)
+....+... +++...+.. ++...|.++.|.|++++|.-.|-.+..
T Consensus 304 ~~~~~f~~~-------gl~~~~l~~----~w~l~d~~n~~~ls~~ef~~~~~~~~~ 348 (847)
T KOG0998|consen 304 EARNIFLPF-------GLSKPRLAH----VWLLADTQNTGTLSKDEFALAMHLLEQ 348 (847)
T ss_pred ccccccccC-------CCChhhhhh----hhhhcchhccCcccccccchhhhhhhh
Confidence 999988752 667766555 667799999999999999887765443
No 215
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=80.79 E-value=2.8 Score=40.78 Aligned_cols=63 Identities=13% Similarity=0.186 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCCCCcceeHHHHHHHHHHhcCC--CCHHHHHHHHHhccCC----CCCcccHHHHHHHHHH
Q psy5584 1214 FVRMMFNIVDKDGDGRISFQEFLDTVVLFSRG--HTEDKLRIIFDMCDND----RNGVIDKGELAEMLRS 1277 (2014)
Q Consensus 1214 ~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~--~~eeel~~lF~~~D~D----~dG~Is~eEF~~~l~~ 1277 (2014)
+++.+|..+-. +.+.++.++|..+|..-... .+.++++.++..+..+ ..+.++.++|..+|.+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 47889999955 89999999999999885543 5799999999999765 4799999999999965
No 216
>KOG0580|consensus
Probab=77.54 E-value=1.4 Score=50.52 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=48.8
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH-----HHHHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK-----LEHFFREA 1169 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~-----L~h~~~~~ 1169 (2014)
.||.+.+..+.+++|.+-.+.|. ..||.+++|+|.++|.+++.+|+ +.|+|..+
T Consensus 220 ppFes~~~~etYkrI~k~~~~~p----~~is~~a~dlI~~ll~~~p~~r~~l~~v~~hpwI~a 278 (281)
T KOG0580|consen 220 PPFESQSHSETYKRIRKVDLKFP----STISGGAADLISRLLVKNPIERLALTEVMDHPWIVA 278 (281)
T ss_pred CchhhhhhHHHHHHHHHccccCC----cccChhHHHHHHHHhccCccccccHHHHhhhHHHHh
Confidence 59999999999999999888887 78999999999999999999984 88999853
No 217
>KOG0585|consensus
Probab=77.07 E-value=0.98 Score=56.24 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=48.4
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH-----HHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK-----LEHFFR 1167 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~-----L~h~~~ 1167 (2014)
+||.++.+.+.+.+|.+..+.|...+ .++++++|+|+++|.+|+.+|+ -.|+|.
T Consensus 317 ~PF~~~~~~~l~~KIvn~pL~fP~~p--e~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwv 375 (576)
T KOG0585|consen 317 LPFFDDFELELFDKIVNDPLEFPENP--EINEDLKDLIKRLLEKDPEQRITLPDIKLHPWV 375 (576)
T ss_pred CCcccchHHHHHHHHhcCcccCCCcc--cccHHHHHHHHHHhhcChhheeehhhheeccee
Confidence 79999999999999999999997665 7899999999999999999996 356665
No 218
>PLN02952 phosphoinositide phospholipase C
Probab=76.93 E-value=11 Score=49.95 Aligned_cols=93 Identities=13% Similarity=0.159 Sum_probs=67.0
Q ss_pred CCCceeHHHHHHHHHHHhc--CCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHc
Q psy5584 1385 GDGRISFQEFLDTVVLFSR--GHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDA 1462 (2014)
Q Consensus 1385 gdG~Isf~EFl~~l~~~~~--~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~ 1462 (2014)
+.|.++|+||..+...+.. .....++..+|..+-. +++.++.++|..+|...-. ....+.+++.++++.+++..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~---e~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQD---ELDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCC---CcCCCHHHHHHHHHHHHhhc
Confidence 4689999999888777643 2356789999999954 4468999999999986422 11356777777776655443
Q ss_pred C---CCCCCcccHHHHHHHHHh
Q psy5584 1463 G---LDSKDFLTYQDFKLMMRD 1481 (2014)
Q Consensus 1463 D---~d~dG~Is~eEF~~~l~~ 1481 (2014)
. ..+.+.++++.|..+|..
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccccccCcCHHHHHHHHcC
Confidence 2 123446999999999974
No 219
>KOG3555|consensus
Probab=76.37 E-value=3.1 Score=49.47 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHH
Q psy5584 1212 AVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1277 (2014)
Q Consensus 1212 ~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~ 1277 (2014)
...+.-||+.+|.|.||.|+..|+..+- ....|.-++.+|++.|...||.||-.|....+..
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 4668899999999999999999987654 3445677999999999999999999999988864
No 220
>KOG4578|consensus
Probab=75.70 E-value=2.1 Score=50.41 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=51.1
Q ss_pred HHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCcc
Q psy5584 1410 LRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYKG 1484 (2014)
Q Consensus 1410 l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~~ 1484 (2014)
+.--|..+|+|.++.|.+.|++.+=+-+.. ......-...+++..|.|+|.+||++|+...|...+.
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k--------~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLK--------KSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHh--------hccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 555699999999999999996654442221 2234556778999999999999999999999876543
No 221
>KOG4347|consensus
Probab=74.05 E-value=3.7 Score=53.18 Aligned_cols=61 Identities=18% Similarity=0.556 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHccCCCCceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHH
Q psy5584 1369 SDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGEL 1430 (2014)
Q Consensus 1369 ~s~~~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf 1430 (2014)
.+...++++|...|.+++|.|+|.+++..+..+..+..-++++.+|+.+|.+++ ..+.+|.
T Consensus 552 ~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 552 VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 456789999999999999999999999999999988888999999999999999 9999998
No 222
>KOG4578|consensus
Probab=73.35 E-value=2.3 Score=50.12 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=52.6
Q ss_pred HHHHHHHhhcCCCCcceeHHHHHHHHHHhc-CCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHH
Q psy5584 1214 FVRMMFNIVDKDGDGRISFQEFLDTVVLFS-RGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1277 (2014)
Q Consensus 1214 ~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~-~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~ 1277 (2014)
.+.--|..+|+|.++.|+..|++.+=..+. ......-.+.+|+..|.|+|-+||+.|+...|..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 466779999999999999999777655533 3445566788999999999999999999998854
No 223
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=72.10 E-value=18 Score=35.76 Aligned_cols=77 Identities=22% Similarity=0.359 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhc---CC-CCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy5584 1407 EDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMAR---TT-SLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDY 1482 (2014)
Q Consensus 1407 ~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~---~~-~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~ 1482 (2014)
.++++.+|+.+ .|.+|.++..-|..+|+++..... +. .+.. ++..++..|+... .+-.|+.++|++.|+..
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~--~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGY--IEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT----HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccC--cHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 47899999999 799999999999999887543221 10 1222 5556777888873 45679999999999988
Q ss_pred cccchh
Q psy5584 1483 KGDFVA 1488 (2014)
Q Consensus 1483 ~~~l~~ 1488 (2014)
|..+..
T Consensus 77 Pq~lVW 82 (90)
T PF09069_consen 77 PQSLVW 82 (90)
T ss_dssp -TTTTH
T ss_pred CCeeeH
Confidence 765533
No 224
>KOG1029|consensus
Probab=70.00 E-value=5.4 Score=51.94 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=55.7
Q ss_pred cHHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHH
Q psy5584 1211 DAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1277 (2014)
Q Consensus 1211 ~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~ 1277 (2014)
+....+++|+.+|+..+|+++=..=..+|. ..+++...+..+|..-|.|+||+++.+||.-++.-
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~--qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALG--QSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHH--hcCCchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 345678999999999999999888777764 45678889999999999999999999999877653
No 225
>KOG3555|consensus
Probab=69.27 E-value=5.9 Score=47.25 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=49.2
Q ss_pred HHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCc
Q psy5584 1407 EDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYK 1483 (2014)
Q Consensus 1407 ~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~ 1483 (2014)
...+.-||..+|.|.||.++..|+..+-.. .. +.-|+.+|...|...||.||-.|+...+.+..
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-----------kn--E~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD-----------KN--EACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc-----------Cc--hhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 356888899999999999999998876542 11 23456678889999999999999998887654
No 226
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=68.67 E-value=4.6 Score=37.33 Aligned_cols=43 Identities=16% Similarity=0.363 Sum_probs=31.5
Q ss_pred ccCCchhhhHhhhhhhhhh--HHhhhhhHHHHHHHHHHHHHHHHHH
Q psy5584 286 FQGSELAYIYACLFLMVVP--FICGAAGYGVIKLQDRKRRALKMKQ 329 (2014)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (2014)
...+..+|+.+. ++++.| ++|++.+|.+++..+++.++.+.+.
T Consensus 15 vAkdP~~Fl~~v-ll~LtPlfiisa~lSwkLaK~ie~~ere~K~k~ 59 (74)
T PF15086_consen 15 VAKDPYEFLTTV-LLILTPLFIISAVLSWKLAKAIEKEEREKKKKA 59 (74)
T ss_pred HHcChHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777887766 466778 4999999988888777766666554
No 227
>KOG4236|consensus
Probab=68.56 E-value=2.9 Score=52.45 Aligned_cols=58 Identities=9% Similarity=-0.010 Sum_probs=49.4
Q ss_pred ecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH-----HHHHHHHHHh
Q psy5584 1114 FDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK-----LEHFFREAYA 1171 (2014)
Q Consensus 1114 F~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~-----L~h~~~~~F~ 1171 (2014)
|..+.+.++-.+|++..+-+...+|..||++|-|||.++|..+-++|. |.|+|.+-+.
T Consensus 764 FPFNEdEdIndQIQNAaFMyPp~PW~eis~~AidlIn~LLqVkm~kRysvdk~lsh~Wlq~yq 826 (888)
T KOG4236|consen 764 FPFNEDEDINDQIQNAAFMYPPNPWSEISPEAIDLINNLLQVKMRKRYSVDKSLSHPWLQDYQ 826 (888)
T ss_pred ccCCCccchhHHhhccccccCCCchhhcCHHHHHHHHHHHHHHHHHhcchHhhccchhhhcch
Confidence 444456778899999999999999999999999999999999999994 7888876433
No 228
>KOG4717|consensus
Probab=61.95 E-value=7.3 Score=48.99 Aligned_cols=115 Identities=11% Similarity=0.097 Sum_probs=73.7
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH-----HHHHHHHHHhhhcCCCCCCcCCCCc
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK-----LEHFFREAYALTFGLKPGEKRRRDD 1186 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~-----L~h~~~~~F~~~~d~d~~~~~~~~~ 1186 (2014)
+||.-.++.|.+..|+..++.-. ..+|.+++|||..||..||++|. ..+.|.+. .| .. ++
T Consensus 217 ~PFqeANDSETLTmImDCKYtvP----shvS~eCrdLI~sMLvRdPkkRAslEeI~s~~Wlq~----~D--~~-----~s 281 (864)
T KOG4717|consen 217 PPFQEANDSETLTMIMDCKYTVP----SHVSKECRDLIQSMLVRDPKKRASLEEIVSTSWLQA----GD--RG-----LS 281 (864)
T ss_pred CccccccchhhhhhhhcccccCc----hhhhHHHHHHHHHHHhcCchhhccHHHHhccccccC----CC--CC-----cc
Confidence 69999999999999999998765 47899999999999999999993 45566642 11 11 11
Q ss_pred cccccccccCcCHHHHHHHhC--CCCcHHHHHHHHHhhcCCCCcceeHHHHHHHHHH
Q psy5584 1187 ETGEVVMRTSLSRAEFASALG--MKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVL 1241 (2014)
Q Consensus 1187 ~~~~~~l~~~Ls~~El~~~L~--~~~~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~ 1241 (2014)
..+--+-+..|..++=+.+.. ...+...-+.+...+|+|.-..|+..-|+-+-..
T Consensus 282 T~iPLvsr~~L~ee~Ha~IIq~Mv~G~IAs~e~Il~aLe~n~YNhiTATYfLLAEr~ 338 (864)
T KOG4717|consen 282 TAIPLVSRHHLPEEAHATIIQQMVAGAIASEEDILRALENNEYNHITATYFLLAERV 338 (864)
T ss_pred ccCceeehhhCChHHHHHHHHHHhcccccCHHHHHHHHhccccchhhhHHHHHHHHH
Confidence 111122235566665443221 1111222234566677777777777777655443
No 229
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=61.44 E-value=18 Score=39.89 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCC----------------------------------------------
Q psy5584 1213 VFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGH---------------------------------------------- 1246 (2014)
Q Consensus 1213 ~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~---------------------------------------------- 1246 (2014)
..+++-..-+|.|+||.|...|-...++.++-+.
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 3467778889999999999888665544421110
Q ss_pred -------CHHHHHHHHHhccCCCCCcccHHHHHHHHHH
Q psy5584 1247 -------TEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1277 (2014)
Q Consensus 1247 -------~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~ 1277 (2014)
..++++++|..++..+.+.|++.|+.+|++.
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 1467889999999988899999999998876
No 230
>KOG0039|consensus
Probab=58.61 E-value=70 Score=43.64 Aligned_cols=45 Identities=38% Similarity=0.637 Sum_probs=38.7
Q ss_pred CcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q psy5584 1227 DGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1278 (2014)
Q Consensus 1227 dG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~ 1278 (2014)
+| |+++||. +.....+++++.+|.++|. ++|.++.+|+..++...
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~ 46 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSS 46 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHH
Confidence 56 8899988 6667788999999999999 99999999999887664
No 231
>PRK03735 cytochrome b6; Provisional
Probab=55.78 E-value=54 Score=38.30 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=21.5
Q ss_pred CCCchhhH-HHHHHHHHHHHHHHHHHHHH
Q psy5584 1581 YIPLDSHI-QFHKIAACTALFFSLIHTVG 1608 (2014)
Q Consensus 1581 ~i~~d~~~-~~Hr~ig~~~~~~~~lH~i~ 1608 (2014)
-+++--++ .+|+|-|-++++.+.+|..-
T Consensus 83 ev~~GwliR~~H~~gas~~~~~~~lH~~r 111 (223)
T PRK03735 83 EVAFGWIVRGMHHWGASLVIVMMFLHTLR 111 (223)
T ss_pred ccccHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34443333 78999999999999999763
No 232
>KOG0575|consensus
Probab=55.77 E-value=5.6 Score=51.46 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=45.9
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHH-----HHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQK-----KLEHFF 1166 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r-----~L~h~~ 1166 (2014)
+||..++-.+++.+|....+.+.. .+|.+|++||.++|..+|.+| +|+|.|
T Consensus 216 PPFetk~vkety~~Ik~~~Y~~P~----~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h~F 271 (592)
T KOG0575|consen 216 PPFETKTVKETYNKIKLNEYSMPS----HLSAEAKDLIRKLLRPNPSERPSLDEVLDHPF 271 (592)
T ss_pred CCcccchHHHHHHHHHhcCccccc----ccCHHHHHHHHHHhcCCcccCCCHHHHhcCHh
Confidence 699999999999999999999876 799999999999999999998 466643
No 233
>KOG0616|consensus
Probab=54.60 E-value=10 Score=45.15 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=42.8
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK 1161 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~ 1161 (2014)
.||.+.+.-+++.+|+++++.|.. .+|.+++||++++|+.|..+|+
T Consensus 239 pPF~~~~~~~iY~KI~~~~v~fP~----~fs~~~kdLl~~LL~vD~t~R~ 284 (355)
T KOG0616|consen 239 PPFYDDNPIQIYEKILEGKVKFPS----YFSSDAKDLLKKLLQVDLTKRF 284 (355)
T ss_pred CCCcCCChHHHHHHHHhCcccCCc----ccCHHHHHHHHHHHhhhhHhhh
Confidence 599999999999999999999974 6899999999999999999994
No 234
>cd00214 Calpain_III Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are separated by C2-like domain III. Domain III plays an important role in calcium-induced activation of calpain involving electrostatic interactions with subdomain II. Proposed to mediate calpain's interaction with phospholipids and translocation to cytoplasmic/nuclear membranes. CD includes subdomain III of typical and atypical calpains.
Probab=53.90 E-value=2.8 Score=45.86 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=36.1
Q ss_pred CeeEEEeCCCCCeEEEEEcccCCCCCCCCeEEEEEccCcceEEeecChh--HHHHHHHHHhh
Q psy5584 1070 EKLRTVNFKNCDTVTIEESQPERGKKKHPMVLIRVHRDHDLVLEFDSLA--ARKKFMNKMEG 1129 (2014)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlPF~~~~--~~~~~~~Il~~ 1129 (2014)
.+..+.+|.+.++|+..+ +||+|+|+|+|.+.+. +++++++|+..
T Consensus 96 ~~~~s~~~~~~rev~~~~---------------~L~pG~YvIIPsT~~p~~~g~F~LrVfs~ 142 (150)
T cd00214 96 PRARSSTFINTREVSLRF---------------RLPPGEYVIVPSTFEPGEEGEFLLRVFSE 142 (150)
T ss_pred cccccCccccccEEEEEE---------------EcCCCCEEEEeeecCCCCcccEEEEEEec
Confidence 345677899999999988 8999999999988665 56777776653
No 235
>KOG1955|consensus
Probab=53.52 E-value=16 Score=45.46 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=48.3
Q ss_pred HHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy5584 1410 LRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMR 1480 (2014)
Q Consensus 1410 l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~ 1480 (2014)
...-|+..-.|-+|+|+-.--++++.+- +|.-+|+.. |++..|.|.||.+++.||++.|.
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFtKS-------klpi~ELsh----IWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFTKS-------KLPIEELSH----IWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhhhc-------cCchHHHHH----HHhhcccCccccccHHHHHhhHh
Confidence 3345778888999999988888877642 677777655 77889999999999999999875
No 236
>KOG1707|consensus
Probab=53.20 E-value=51 Score=42.98 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCCCCCcccHHHHHHHHHhCcc
Q psy5584 1452 TELIDGMFQDAGLDSKDFLTYQDFKLMMRDYKG 1484 (2014)
Q Consensus 1452 ~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~~ 1484 (2014)
-+.+..+|..+|.|+||.++-+|+..++...|.
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 345667999999999999999999999988775
No 237
>KOG0042|consensus
Probab=52.60 E-value=28 Score=44.80 Aligned_cols=76 Identities=18% Similarity=0.356 Sum_probs=67.5
Q ss_pred cccCcCHHHHHHHhCCCCcHHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHH
Q psy5584 1193 MRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELA 1272 (2014)
Q Consensus 1193 l~~~Ls~~El~~~L~~~~~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~ 1272 (2014)
+.-.++.+++.. .+..|..+|.|+.|.++.+....+|.....+.+++.+.++.+..|.+-+|.++..||.
T Consensus 583 ~~i~~~~~~~~~----------~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~ 652 (680)
T KOG0042|consen 583 IPIKLTPEDFLR----------RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFL 652 (680)
T ss_pred cccccCHHHHHH----------HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHH
Confidence 445677777754 6788999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHH
Q psy5584 1273 EMLRSL 1278 (2014)
Q Consensus 1273 ~~l~~~ 1278 (2014)
+++...
T Consensus 653 q~~s~~ 658 (680)
T KOG0042|consen 653 QLMSAI 658 (680)
T ss_pred HHHHHH
Confidence 988664
No 238
>KOG0035|consensus
Probab=51.08 E-value=38 Score=46.47 Aligned_cols=59 Identities=17% Similarity=0.100 Sum_probs=44.5
Q ss_pred HHHHHHHHHccCCCCceeHHHHHHHHHHHhcC-CcHHHHHHHHhhhcCCCCCeeeHHHHHH
Q psy5584 1373 FVRMMFNIVDKDGDGRISFQEFLDTVVLFSRG-HTEDKLRIIFDMCDNDRNGVIDKGELAE 1432 (2014)
Q Consensus 1373 ~l~~lf~~~D~DgdG~Isf~EFl~~l~~~~~~-~~~e~l~~~F~~~D~DgdG~Is~eEf~~ 1432 (2014)
++.++.+..|.+.-|.+++.||.+.|.+.... ..+.++..+|+..-++.. +|..+|+..
T Consensus 789 e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 789 EWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 35556666777778999999999999875443 556778888888776666 777777776
No 239
>KOG0605|consensus
Probab=50.76 E-value=11 Score=48.32 Aligned_cols=49 Identities=4% Similarity=-0.024 Sum_probs=44.1
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK 1161 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~ 1161 (2014)
.||.+++..+++.+|++-.-.+..+.-..+|++|+|||.++|+ ++.+|+
T Consensus 386 PPF~s~tp~~T~rkI~nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RL 434 (550)
T KOG0605|consen 386 PPFCSETPQETYRKIVNWRETLKFPEEVDLSDEAKDLITRLLC-DPENRL 434 (550)
T ss_pred CCCCCCCHHHHHHHHHHHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhc
Confidence 6999999999999999998777777777899999999999999 888883
No 240
>KOG2243|consensus
Probab=50.43 E-value=19 Score=49.07 Aligned_cols=63 Identities=24% Similarity=0.405 Sum_probs=0.0
Q ss_pred HhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCcccc
Q psy5584 1414 FDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYKGDF 1486 (2014)
Q Consensus 1414 F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~~~l 1486 (2014)
|+.||.||.|.|++.||..++..-. ..+..+++- ++.-+..|.+..++|+||.+-+......+
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~k------~ytqse~df----llscae~dend~~~y~dfv~rfhepakdi 4125 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGHK------HYTQSEIDF----LLSCAEADENDMFDYEDFVDRFHEPAKDI 4125 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhccc------cchhHHHHH----HHHhhccCccccccHHHHHHHhcCchhhc
No 241
>KOG0592|consensus
Probab=49.34 E-value=7.3 Score=49.79 Aligned_cols=46 Identities=9% Similarity=-0.051 Sum_probs=42.2
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK 1161 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~ 1161 (2014)
.||.+.++..+|++|+.-.+.|.. .+++.++|||+++|..|+.+|+
T Consensus 285 PPFra~NeyliFqkI~~l~y~fp~----~fp~~a~dLv~KLLv~dp~~Rl 330 (604)
T KOG0592|consen 285 PPFRAANEYLIFQKIQALDYEFPE----GFPEDARDLIKKLLVRDPSDRL 330 (604)
T ss_pred CCCccccHHHHHHHHHHhcccCCC----CCCHHHHHHHHHHHccCccccc
Confidence 699999999999999999999874 5679999999999999999995
No 242
>KOG1955|consensus
Probab=48.37 E-value=28 Score=43.44 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=53.2
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q psy5584 1213 VFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1278 (2014)
Q Consensus 1213 ~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~ 1278 (2014)
+..-.-|..+-.|-.|.|+=.--+.++.+- .++-+++..+|+..|.|.||.|+..||+.+|.-.
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 345567888889999999987777776653 4677899999999999999999999999998754
No 243
>KOG0690|consensus
Probab=46.72 E-value=12 Score=44.54 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=42.6
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQK 1160 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r 1160 (2014)
|||+..+....|.-|+.+.+.|.+ .+|+++|.|+..+|.++|.+|
T Consensus 366 LPFyn~dh~kLFeLIl~ed~kFPr----~ls~eAktLLsGLL~kdP~kR 410 (516)
T KOG0690|consen 366 LPFYNKDHEKLFELILMEDLKFPR----TLSPEAKTLLSGLLKKDPKKR 410 (516)
T ss_pred CcccccchhHHHHHHHhhhccCCc----cCCHHHHHHHHHHhhcChHhh
Confidence 799999999999999999999975 589999999999999999999
No 244
>KOG2243|consensus
Probab=45.95 E-value=59 Score=44.85 Aligned_cols=92 Identities=14% Similarity=0.338 Sum_probs=0.0
Q ss_pred cccccCcCHHHHHHHhCCCCcHHHHHHHHHhhcCCCCcceeHHHHHHHHHHhcCCCCHHHHHHH-----HHhccCCCCCc
Q psy5584 1191 VVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRII-----FDMCDNDRNGV 1265 (2014)
Q Consensus 1191 ~~l~~~Ls~~El~~~L~~~~~~~~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~~~~~eeel~~l-----F~~~D~D~dG~ 1265 (2014)
.++.+.|.+.-.........+-+.+-+.|.+| -+++.+ |+.||.||.|.
T Consensus 4020 nvvngtigkqmvd~lvess~nvemilkffdmf--------------------------lklkdltssdtfkeydpdgkgi 4073 (5019)
T KOG2243|consen 4020 NVVNGTIGKQMVDMLVESSNNVEMILKFFDMF--------------------------LKLKDLTSSDTFKEYDPDGKGI 4073 (5019)
T ss_pred CcccchhHHHHHHHHHHcCccHHHHHHHHHHH--------------------------HHHhhccccccchhcCCCCCcc
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccCC
Q psy5584 1266 IDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQSPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDD 1345 (2014)
Q Consensus 1266 Is~eEF~~~l~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~f~~~~~~~~~~~~~d~d 1345 (2014)
|+..||.+++.+..
T Consensus 4074 iskkdf~kame~~k------------------------------------------------------------------ 4087 (5019)
T KOG2243|consen 4074 ISKKDFHKAMEGHK------------------------------------------------------------------ 4087 (5019)
T ss_pred ccHHHHHHHHhccc------------------------------------------------------------------
Q ss_pred CcccccccccccHHHHHHHhCCCChHHHHHHHHHHHccCCCCceeHHHHHH
Q psy5584 1346 ETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLD 1396 (2014)
Q Consensus 1346 ~~G~~~~~g~ls~~Ef~~~Lg~~~s~~~l~~lf~~~D~DgdG~Isf~EFl~ 1396 (2014)
..+..+++-+..-...|.+...+|+||++
T Consensus 4088 ----------------------~ytqse~dfllscae~dend~~~y~dfv~ 4116 (5019)
T KOG2243|consen 4088 ----------------------HYTQSEIDFLLSCAEADENDMFDYEDFVD 4116 (5019)
T ss_pred ----------------------cchhHHHHHHHHhhccCccccccHHHHHH
No 245
>KOG0598|consensus
Probab=44.58 E-value=14 Score=45.30 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=40.6
Q ss_pred EEeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHH
Q psy5584 1111 VLEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQK 1160 (2014)
Q Consensus 1111 vlPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r 1160 (2014)
+.||++++..+...+|+++++.+.. ..+|.+++++++++|++++.+|
T Consensus 222 ~pPF~~~~~~~~~~~I~~~k~~~~p---~~ls~~ardll~~LL~rdp~~R 268 (357)
T KOG0598|consen 222 KPPFYAEDVKKMYDKILKGKLPLPP---GYLSEEARDLLKKLLKRDPRQR 268 (357)
T ss_pred CCCCcCccHHHHHHHHhcCcCCCCC---ccCCHHHHHHHHHHhccCHHHh
Confidence 5699999999999999998854432 2479999999999999999999
No 246
>KOG0035|consensus
Probab=43.74 E-value=31 Score=47.22 Aligned_cols=72 Identities=17% Similarity=0.064 Sum_probs=59.4
Q ss_pred HHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCcc
Q psy5584 1408 DKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLT-DSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYKG 1484 (2014)
Q Consensus 1408 e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls-~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~~ 1484 (2014)
++++..|+.+|+...|.++.+|+...+.++|. ... +++..+.+..++...|++..|.++|.+|...|.+...
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~-----~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGY-----NTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCc-----ccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 56888999999999999999999999988765 333 3556666777888889999999999999999877543
No 247
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=43.14 E-value=6.4 Score=36.86 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=38.8
Q ss_pred CcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC---CCCcccHHHHHH
Q psy5584 1405 HTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLD---SKDFLTYQDFKL 1477 (2014)
Q Consensus 1405 ~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d---~dG~Is~eEF~~ 1477 (2014)
.+.+++..+|+.+ .++.++||.+||++.|. +++++-++..|=...|.+ ..|.++|..|..
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~------------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT------------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-------------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcC------------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 3557899999999 88899999999998764 333433333322223332 236788888875
No 248
>KOG0042|consensus
Probab=40.21 E-value=28 Score=44.70 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=53.8
Q ss_pred HHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCc
Q psy5584 1410 LRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYK 1483 (2014)
Q Consensus 1410 l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~ 1483 (2014)
.+..|..+|.|+.|+++.++..++|++.+. +++++.+.+ +++++|.+-+|.++..||..++....
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~-----~~d~~~~~~----~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENV-----GWDEDRLHE----ELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcC-----CCCHHHHHH----HHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 455688999999999999999999997664 677776655 56678888899999999999887643
No 249
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=39.07 E-value=1.3e+02 Score=34.81 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=21.8
Q ss_pred CCCchhh-HHHHHHHHHHHHHHHHHHHHHH
Q psy5584 1581 YIPLDSH-IQFHKIAACTALFFSLIHTVGH 1609 (2014)
Q Consensus 1581 ~i~~d~~-~~~Hr~ig~~~~~~~~lH~i~~ 1609 (2014)
-+++--+ -.+|+|-+-++++++.+|..--
T Consensus 64 ev~~G~liR~~H~~gas~~~~~~~lH~~r~ 93 (200)
T cd00284 64 DVNFGWLIRSLHANGASMFFLMLYLHIFRG 93 (200)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 3799999999999999998743
No 250
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=38.96 E-value=68 Score=30.10 Aligned_cols=27 Identities=15% Similarity=0.449 Sum_probs=18.2
Q ss_pred chhhhHHHHHHHHHH--HHHHhHHHHHHHH
Q psy5584 980 LAYIYACLFLMVVPF--ICGAAGYGVIKLQ 1007 (2014)
Q Consensus 980 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 1007 (2014)
.+|+++ ++||+-|+ +|++..|-+++.=
T Consensus 20 ~~Fl~~-vll~LtPlfiisa~lSwkLaK~i 48 (74)
T PF15086_consen 20 YEFLTT-VLLILTPLFIISAVLSWKLAKAI 48 (74)
T ss_pred HHHHHH-HHHHHhHHHHHHHHHHHHHHHHH
Confidence 455544 45566666 7889999988833
No 251
>PLN02952 phosphoinositide phospholipase C
Probab=35.79 E-value=98 Score=41.44 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=50.8
Q ss_pred CCcceeHHHHHHHHHHhcC--CCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Q psy5584 1226 GDGRISFQEFLDTVVLFSR--GHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDG 1298 (2014)
Q Consensus 1226 gdG~Is~~EF~~~l~~l~~--~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~~~~~~~~s~~e~~~~i~~ 1298 (2014)
+.|.++|+||..+.+.+.. ..+..+++.+|..+-.++ +.|+.++|..+|...+. ....+.++..+++++
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~---e~~~~~~~~~~i~~~ 83 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQD---ELDCTLAEAQRIVEE 83 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCC---CcCCCHHHHHHHHHH
Confidence 4689999999988887743 347889999999996544 68999999999987542 123455555555544
No 252
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=35.47 E-value=2.1e+02 Score=31.55 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=46.9
Q ss_pred HHHHHhh---cCCCCcceeHHHHHHHHHH---hcCCCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH
Q psy5584 1216 RMMFNIV---DKDGDGRISFQEFLDTVVL---FSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVE 1280 (2014)
Q Consensus 1216 ~~lF~~~---D~dgdG~Is~~EF~~~l~~---l~~~~~eeel~~lF~~~D~D~dG~Is~eEF~~~l~~~~~ 1280 (2014)
+.+|..| -..+...++-..|..+++. +....+..++..+|..+-..+...|+|++|..+|..+..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~ 72 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAE 72 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHH
Confidence 3444444 3555667899999999887 455688899999999987777778999999999987654
No 253
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=34.61 E-value=2.7e+02 Score=31.13 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy5584 1587 HIQFHKIAACTALFFSLIHTVGH 1609 (2014)
Q Consensus 1587 ~~~~Hr~ig~~~~~~~~lH~i~~ 1609 (2014)
...+|.++|.++++..+++.+..
T Consensus 42 ~~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 42 VRNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999998887744
No 254
>CHL00070 petB cytochrome b6
Probab=33.61 E-value=1.3e+02 Score=34.90 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=21.5
Q ss_pred CCCchhhH-HHHHHHHHHHHHHHHHHHH
Q psy5584 1581 YIPLDSHI-QFHKIAACTALFFSLIHTV 1607 (2014)
Q Consensus 1581 ~i~~d~~~-~~Hr~ig~~~~~~~~lH~i 1607 (2014)
-+++--++ .+|.|-|-++++.+.+|..
T Consensus 75 ev~~Gwl~R~~H~~gas~~~~~~~lH~~ 102 (215)
T CHL00070 75 EVNFGWLIRSVHRWSASMMVLMMILHVF 102 (215)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554443 7899999999999999976
No 255
>KOG0597|consensus
Probab=31.53 E-value=28 Score=44.91 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=46.6
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH-----HHH-HHHHHHh
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK-----LEH-FFREAYA 1171 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~-----L~h-~~~~~F~ 1171 (2014)
.||++++-.+.+..|+....... ...|.+.+.|++.+|.+||.+|+ +.| +|+..+.
T Consensus 198 PPF~a~si~~Lv~~I~~d~v~~p----~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~HpF~k~~~~ 259 (808)
T KOG0597|consen 198 PPFYARSITQLVKSILKDPVKPP----STASSSFVNFLQGLLIKDPAQRLTWTDLLGHPFWKGKIN 259 (808)
T ss_pred CCchHHHHHHHHHHHhcCCCCCc----ccccHHHHHHHHHHhhcChhhcccHHHHhcChHHhhhhh
Confidence 69999999999999999755433 27899999999999999999995 778 6776654
No 256
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=31.26 E-value=4.6e+02 Score=28.89 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=44.6
Q ss_pred HHHHHHHc---cCCCCceeHHHHHHHHHHH---hcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHH
Q psy5584 1375 RMMFNIVD---KDGDGRISFQEFLDTVVLF---SRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVE 1439 (2014)
Q Consensus 1375 ~~lf~~~D---~DgdG~Isf~EFl~~l~~~---~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~ 1439 (2014)
+.+|..|- ..+...++-..|..++... ....+...+..+|..+-..+...|+.++|..+|..+..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~ 72 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAE 72 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHH
Confidence 34555552 3445678888888888763 33466778899999876666677999999999987655
No 257
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=31.20 E-value=2.1e+02 Score=32.09 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=26.9
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5584 1580 QYIPLDSHIQFHKIAACTALFFSLIHTVGHIIN 1612 (2014)
Q Consensus 1580 ~~i~~d~~~~~Hr~ig~~~~~~~~lH~i~~~~~ 1612 (2014)
..-.......+|+++|.+.++..+++.+..+..
T Consensus 39 ~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~ 71 (188)
T PF00033_consen 39 GFPGRQLLRWLHFSLGIVFLALFLLRILWRLFS 71 (188)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667788999999999999999998865544
No 258
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=31.19 E-value=4.4e+02 Score=31.53 Aligned_cols=103 Identities=15% Similarity=0.205 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccccccccccccCCCCCCCcceeeeccccchhHHHHHHHHHHHHHHhh
Q psy5584 1589 QFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGITFWLFQTITGITGVLLFVIMVLIFVFA 1668 (2014)
Q Consensus 1589 ~~Hr~ig~~~~~~~~lH~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~g~tGii~~~~l~im~v~S 1668 (2014)
.+|-..|.+..+|.+.|.+. +.....+......+...+...+.. -...+-++++.++++++++++-+
T Consensus 26 ~~qSltGviLglFl~~Hm~~--~ssil~G~~afn~va~f~E~~~~~-----------~~g~p~~~sl~~~~I~l~~l~Ha 92 (258)
T PRK13553 26 FLQSATGLFLGLFMWAHMFF--VSTILISDDAMYKVAKFFEGSFFF-----------KAGEPALVSFVAAGVILIFVVHA 92 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHhhCccc-----------cCCcchhHHHHHHHHHHHHHHHH
Confidence 68999999999999999763 212222222111111111110000 00112356777777777777777
Q ss_pred hHHHhhhh-----hhHH--------------HHHHHH-HHHHHHHHHhhccccccC
Q psy5584 1669 HPTIRKKA-----YNWF--------------WLAHSL-YVFLFALMLIHGLARITG 1704 (2014)
Q Consensus 1669 ~~~iRr~~-----Ye~F--------------~~~H~l-~~~~~vl~~~H~~~~l~~ 1704 (2014)
.--+|+-. |..| |+.-.+ .+++++++.+|.....++
T Consensus 93 ~lalrk~P~n~~q~~~~r~h~~~m~H~DT~lW~~Q~iTG~ilf~~~~~Hl~~i~~~ 148 (258)
T PRK13553 93 FLAMRKFPINYRQYQIFRTHKHLMKHGDTSLWFIQAFTGFAMFFLASVHLYVMLTN 148 (258)
T ss_pred HHHHhhCCCCHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 77777643 3322 222333 345667788998655444
No 259
>KOG0583|consensus
Probab=31.17 E-value=23 Score=44.84 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=45.5
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHH-----HHHHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQK-----KLEHFFRE 1168 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r-----~L~h~~~~ 1168 (2014)
+||+..+....+..|.++.+.+..- -. |.++++|++++|..+|.+| +++|+|.+
T Consensus 221 ~PF~d~~~~~l~~ki~~~~~~~p~~--~~-S~~~~~Li~~mL~~~P~~R~t~~~i~~h~w~~ 279 (370)
T KOG0583|consen 221 LPFDDSNVPNLYRKIRKGEFKIPSY--LL-SPEARSLIEKMLVPDPSTRITLLEILEHPWFQ 279 (370)
T ss_pred CCCCCccHHHHHHHHhcCCccCCCC--cC-CHHHHHHHHHHcCCCcccCCCHHHHhhChhhc
Confidence 7999999999999999998887643 22 9999999999999999998 37777764
No 260
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=30.39 E-value=94 Score=32.27 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhh-----HHHhhhhhhHHHHHHHHHH-HHHHHHHhhcc
Q psy5584 1654 GVLLFVIMVLIFVFAH-----PTIRKKAYNWFWLAHSLYV-FLFALMLIHGL 1699 (2014)
Q Consensus 1654 Gii~~~~l~im~v~S~-----~~iRr~~Ye~F~~~H~l~~-~~~vl~~~H~~ 1699 (2014)
|+++++.+.++++++. .......++.+...|.... +++++..+|+.
T Consensus 2 G~~a~~~l~~~~~l~~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~ 53 (125)
T PF01794_consen 2 GILAFALLPLVFLLGLRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGV 53 (125)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777766666652 2345667999999999964 56678889985
No 261
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=29.93 E-value=2.9e+02 Score=31.46 Aligned_cols=30 Identities=7% Similarity=0.026 Sum_probs=23.3
Q ss_pred EEEEEcCCCEEEEEEecCCCCcccCCCEEE
Q psy5584 1737 LETELLPSDVIKIRFYRPPNFTYHSGQWVR 1766 (2014)
Q Consensus 1737 ~~v~~l~~~v~~l~~~~p~~~~~~pGQyv~ 1766 (2014)
=.++...+|++++.+.-.-..+.+||-|.-
T Consensus 147 G~VeEv~~~~v~V~V~dDI~ANVkPg~YwV 176 (206)
T PF09874_consen 147 GVVEEVKENLVRVFVHDDIAANVKPGYYWV 176 (206)
T ss_pred EEEEEecCCEEEEEEccchhhcCCCCeEEe
Confidence 345777889999999877677899997653
No 262
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.27 E-value=34 Score=28.04 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHh-ccchhhhhccCcccccccccc
Q psy5584 213 GMFTAAEVEAIRK-ITLWDIIVNATDIGADAIQKN 246 (2014)
Q Consensus 213 ~~ft~~ql~~i~~-~~l~~i~c~~~~~~~~~~q~~ 246 (2014)
+.||++|+.++|. +..-+.|-+|..+ +..+|..
T Consensus 1 s~FT~~Ql~~L~~Qi~ayK~l~~~~pV-P~~l~~~ 34 (37)
T PF08880_consen 1 SPFTPAQLQELRAQILAYKYLARNQPV-PPQLQQA 34 (37)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHh
Confidence 5799999999994 4555677766654 3444443
No 263
>COG4485 Predicted membrane protein [Function unknown]
Probab=29.03 E-value=1.1e+02 Score=40.75 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHH-HHHHHHHHhhccccccCCCcchh--hhhHHHHHHHHHHhhhhee
Q psy5584 1675 KAYNWFWLAHSLY-VFLFALMLIHGLARITGPPRFWI--YFIGPGVVFILDKVVSLRT 1729 (2014)
Q Consensus 1675 ~~Ye~F~~~H~l~-~~~~vl~~~H~~~~l~~~p~~~~--~~~~~~~l~~~drl~r~~r 1729 (2014)
..|..|-.+|.+- ..++.++.+-.+...+ .+|. +++.|+++++++|+++-++
T Consensus 126 ~~~~~~~~ll~~~~st~~almsf~~Sqlei---~~WlDvfilLPLiIlGl~rli~ErK 180 (858)
T COG4485 126 VLFQKFSILLKLRISTFYALMSFGVSQLEI---YTWLDVFILLPLIILGLERLITERK 180 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhheEEe---ehHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566676777663 3455555555543322 2343 6788999999999887543
No 264
>KOG1707|consensus
Probab=29.00 E-value=2.5e+02 Score=37.04 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHH-hcCCCCHHHHHHHHH
Q psy5584 1213 VFVRMMFNIVDKDGDGRISFQEFLDTVVL-FSRGHTEDKLRIIFD 1256 (2014)
Q Consensus 1213 ~~l~~lF~~~D~dgdG~Is~~EF~~~l~~-l~~~~~eeel~~lF~ 1256 (2014)
..+..+|...|.|.||.+|=.|+..+=++ ++..+...++..+-.
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~ 239 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKN 239 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHH
Confidence 34788999999999999999998877555 666666555544433
No 265
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=28.66 E-value=2.4e+02 Score=30.28 Aligned_cols=41 Identities=12% Similarity=0.257 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCcccchh
Q psy5584 1445 SLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYKGDFVA 1488 (2014)
Q Consensus 1445 ~ls~~e~~~li~~if~~~D~d~dG~Is~eEF~~~l~~~~~~l~~ 1488 (2014)
.++.+|+..+++.|.+.+..++ ++-|++..+..+.|..+.+
T Consensus 127 ~MSk~Qik~L~~~Ii~~akae~---~dtE~Ye~vwkKmPaY~~n 167 (175)
T PF04876_consen 127 RMSKDQIKTLCEQIIEMAKAES---SDTEHYEKVWKKMPAYFSN 167 (175)
T ss_pred hhhHHHHHHHHHHHHHHHhccC---CchHHHHHHHHHhhHHHHH
Confidence 6777788777777777776554 4557777777777766544
No 266
>KOG0696|consensus
Probab=27.94 E-value=26 Score=43.25 Aligned_cols=45 Identities=13% Similarity=0.058 Sum_probs=41.6
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQK 1160 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r 1160 (2014)
.||+|+++.+.|.+|.+....+. +..|.+|.++.+..|++.|.+|
T Consensus 548 pPFdGeDE~elF~aI~ehnvsyP----KslSkEAv~ickg~ltK~P~kR 592 (683)
T KOG0696|consen 548 PPFDGEDEDELFQAIMEHNVSYP----KSLSKEAVAICKGLLTKHPGKR 592 (683)
T ss_pred CCCCCCCHHHHHHHHHHccCcCc----ccccHHHHHHHHHHhhcCCccc
Confidence 59999999999999999988886 4689999999999999999988
No 267
>MTH00016 CYTB cytochrome b; Validated
Probab=27.87 E-value=4.6e+02 Score=33.42 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5584 1589 QFHKIAACTALFFSLIHTV 1607 (2014)
Q Consensus 1589 ~~Hr~ig~~~~~~~~lH~i 1607 (2014)
.+|.|-|-++++.+.+|..
T Consensus 82 ~~H~~gas~~f~~~ylHi~ 100 (378)
T MTH00016 82 NLHANGASFFFICLYLHIG 100 (378)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999976
No 268
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=27.18 E-value=3.9e+02 Score=31.01 Aligned_cols=27 Identities=7% Similarity=-0.092 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5584 1585 DSHIQFHKIAACTALFFSLIHTVGHII 1611 (2014)
Q Consensus 1585 d~~~~~Hr~ig~~~~~~~~lH~i~~~~ 1611 (2014)
...-..|+++|.+.++..+++...++.
T Consensus 51 ~~~r~iH~~~g~i~~~~~~~~~~~~~~ 77 (211)
T PRK10639 51 QLARILHPFVGVVMFASFIIMFFRYWH 77 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999765543
No 269
>MTH00156 CYTB cytochrome b; Provisional
Probab=26.99 E-value=3.9e+02 Score=33.76 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5584 1589 QFHKIAACTALFFSLIHTV 1607 (2014)
Q Consensus 1589 ~~Hr~ig~~~~~~~~lH~i 1607 (2014)
.+|+|-|-++++.+.+|..
T Consensus 71 ~~H~~gas~~~~~~~lH~~ 89 (356)
T MTH00156 71 TLHANGASFFFICIYLHIG 89 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999976
No 270
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=26.73 E-value=56 Score=34.07 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=21.6
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy5584 981 AYIYACLFLMVVPFICGAAGYGVIKLQDRKR 1011 (2014)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (2014)
-+++.++.+|++-|+|.++-|.+..++++++
T Consensus 82 ~~G~vlLs~GLmlL~~~alcW~~~~rkK~~k 112 (129)
T PF15099_consen 82 IFGPVLLSLGLMLLACSALCWKPIIRKKKKK 112 (129)
T ss_pred hehHHHHHHHHHHHHhhhheehhhhHhHHHH
Confidence 3667778888888888877777655444333
No 271
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.66 E-value=73 Score=33.54 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=18.5
Q ss_pred cCCCCCcchhhhHHHHHHHHHHHHHHhHHHH
Q psy5584 973 DYFEGSELAYIYACLFLMVVPFICGAAGYGV 1003 (2014)
Q Consensus 973 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (2014)
.=|.+-.+..|+.++..|++.++ +++.|++
T Consensus 59 h~fs~~~i~~Ii~gv~aGvIg~I-lli~y~i 88 (122)
T PF01102_consen 59 HRFSEPAIIGIIFGVMAGVIGII-LLISYCI 88 (122)
T ss_dssp SSSS-TCHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred cCccccceeehhHHHHHHHHHHH-HHHHHHH
Confidence 34555577777777777775544 4555665
No 272
>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do
Probab=25.30 E-value=46 Score=39.35 Aligned_cols=50 Identities=8% Similarity=0.014 Sum_probs=39.7
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK 1161 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~ 1161 (2014)
.||.+.+..+.+.++..+...+.......++.+..+++++|+..+|.+|.
T Consensus 191 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~ 240 (260)
T cd05611 191 PPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRL 240 (260)
T ss_pred CCCCCCCHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHcc
Confidence 46777777777777777776666656667899999999999999998883
No 273
>KOG0603|consensus
Probab=25.26 E-value=26 Score=46.00 Aligned_cols=49 Identities=10% Similarity=-0.043 Sum_probs=39.8
Q ss_pred eecChhHH-HHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHHH-----HHHHHH
Q psy5584 1113 EFDSLAAR-KKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQKK-----LEHFFR 1167 (2014)
Q Consensus 1113 PF~~~~~~-~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r~-----L~h~~~ 1167 (2014)
||...+.. ++..+|..++++ ..||.+||||+++||+.+|.+|. +.|+|.
T Consensus 512 p~~~~P~~~ei~~~i~~~~~s------~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~ 566 (612)
T KOG0603|consen 512 LFAAHPAGIEIHTRIQMPKFS------ECVSDEAKDLLQQLLQVDPALRLGADEIGAHPWF 566 (612)
T ss_pred ccccCCchHHHHHhhcCCccc------cccCHHHHHHHHHhccCChhhCcChhhhccCcch
Confidence 56655554 788888887766 78999999999999999999994 677666
No 274
>MTH00145 CYTB cytochrome b; Provisional
Probab=24.04 E-value=5.2e+02 Score=32.97 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5584 1589 QFHKIAACTALFFSLIHTV 1607 (2014)
Q Consensus 1589 ~~Hr~ig~~~~~~~~lH~i 1607 (2014)
.+|+|-|-++++.+.+|..
T Consensus 82 ~~H~~gas~~f~~~~lH~~ 100 (379)
T MTH00145 82 SLHANGASFFFICIYLHIG 100 (379)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999976
No 275
>KOG1688|consensus
Probab=23.81 E-value=9.3e+02 Score=26.89 Aligned_cols=48 Identities=15% Similarity=0.382 Sum_probs=29.9
Q ss_pred HHHhhhh-hhHHHHHHHHHHHHHHHHHhhccccccCCCcchhhhhHHHHHHHH
Q psy5584 1670 PTIRKKA-YNWFWLAHSLYVFLFALMLIHGLARITGPPRFWIYFIGPGVVFIL 1721 (2014)
Q Consensus 1670 ~~iRr~~-Ye~F~~~H~l~~~~~vl~~~H~~~~l~~~p~~~~~~~~~~~l~~~ 1721 (2014)
|++||.. |.+|+..-..+.++++...+-.. .-|.||+-++.-.+++.+
T Consensus 109 PFIRRLPEFKFW~s~~ka~~ia~~~tfF~~f----dVPVFwPILl~Y~i~lf~ 157 (188)
T KOG1688|consen 109 PFIRRLPEFKFWYSSTKATLIALLCTFFSIF----DVPVFWPILLMYFIVLFF 157 (188)
T ss_pred hHHHcCchhHHHHHHHHHHHHHHHHHHHHHh----cchhhhHHHHHHHHHHHH
Confidence 5678876 77777777766666665555442 347888765554444433
No 276
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=22.87 E-value=40 Score=42.67 Aligned_cols=56 Identities=11% Similarity=-0.006 Sum_probs=42.3
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHH--H-----HHHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQ--K-----KLEHFFR 1167 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~--r-----~L~h~~~ 1167 (2014)
.||.+.+..+.+.+|........-+.+..+|.++++++++||+.++.+ | +++|+|.
T Consensus 245 ~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h~~~ 307 (370)
T cd05596 245 TPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKSHPFF 307 (370)
T ss_pred CCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhcCccc
Confidence 588888888888888876555444556678999999999999977754 3 4677553
No 277
>PLN02223 phosphoinositide phospholipase C
Probab=22.33 E-value=2.2e+02 Score=37.54 Aligned_cols=77 Identities=6% Similarity=-0.039 Sum_probs=55.7
Q ss_pred CcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcC----CCCCCcccHHHHHHHHH
Q psy5584 1405 HTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAG----LDSKDFLTYQDFKLMMR 1480 (2014)
Q Consensus 1405 ~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~D----~d~dG~Is~eEF~~~l~ 1480 (2014)
.+.++++.+|..| .+++|.++.+.+.+++.-+.+..+....+.++++.+++.++.... ....+.++.+.|..+|.
T Consensus 13 ~~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 3556788899888 377888999999988854444444336678888888888776543 12346799999999997
Q ss_pred hC
Q psy5584 1481 DY 1482 (2014)
Q Consensus 1481 ~~ 1482 (2014)
..
T Consensus 92 s~ 93 (537)
T PLN02223 92 ST 93 (537)
T ss_pred Cc
Confidence 64
No 278
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=22.16 E-value=1.3e+02 Score=31.52 Aligned_cols=31 Identities=10% Similarity=0.201 Sum_probs=18.3
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5584 976 EGSELAYIYACLFLMVVPFICGAAGYGVIKLQD 1008 (2014)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (2014)
+++...|+|+++.+|+|.+..+++ |+.+.|-
T Consensus 38 ~~~~~~~lYIL~vmgfFgff~~gI--mlsyvRS 68 (129)
T PF02060_consen 38 SDDDNEYLYILVVMGFFGFFTVGI--MLSYVRS 68 (129)
T ss_dssp TT-SSTT-HHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCceeehHHHHHHHHHHHHHHH--HHHHHHH
Confidence 344567888888888887655544 4444443
No 279
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=21.98 E-value=1.2e+02 Score=27.86 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=25.3
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5584 1580 QYIPLDSHIQFHKIAACTALFFSLIHTVGH 1609 (2014)
Q Consensus 1580 ~~i~~d~~~~~Hr~ig~~~~~~~~lH~i~~ 1609 (2014)
.+.+......+|.|.|.++++++.+|...|
T Consensus 34 ~~~~~~~~~~iH~~~g~~~~~l~~~Hl~lh 63 (64)
T PF14358_consen 34 LGLNKHFWRNIHLWAGYLFLILIILHLGLH 63 (64)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566788999999999999999998754
No 280
>MTH00191 CYTB cytochrome b; Provisional
Probab=21.88 E-value=6.4e+02 Score=32.01 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=20.8
Q ss_pred CCCchhhH-HHHHHHHHHHHHHHHHHHH
Q psy5584 1581 YIPLDSHI-QFHKIAACTALFFSLIHTV 1607 (2014)
Q Consensus 1581 ~i~~d~~~-~~Hr~ig~~~~~~~~lH~i 1607 (2014)
-+++--++ .+|.|-|-++++.+.+|..
T Consensus 69 ~v~~G~~~R~~H~~gas~~~~~~~~H~~ 96 (365)
T MTH00191 69 DVNYGWLLRNIHANGASFFFICIYLHIG 96 (365)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333 7899999999999999976
No 281
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=21.61 E-value=1.4e+02 Score=29.79 Aligned_cols=36 Identities=33% Similarity=0.696 Sum_probs=29.9
Q ss_pred HHHHHHHHhhccCCCCccccHHHHHHHHHHHHHhhcC
Q psy5584 105 EDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMART 141 (2014)
Q Consensus 105 ~d~l~~~f~~~D~d~~G~Is~~El~~~L~dL~niqrg 141 (2014)
.||++.+|+.+ .|.+|.++..-+...|.|++.|-+.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~ 37 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRA 37 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 58999999999 8889999999999999999877775
No 282
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=21.15 E-value=1e+03 Score=29.80 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=32.9
Q ss_pred HHHHHHHhhcCCCCcceeHHHHHHHHHHhc-CCCCHHHHHHHHHhccCCCCC--cccHHHHHHHHH
Q psy5584 1214 FVRMMFNIVDKDGDGRISFQEFLDTVVLFS-RGHTEDKLRIIFDMCDNDRNG--VIDKGELAEMLR 1276 (2014)
Q Consensus 1214 ~l~~lF~~~D~dgdG~Is~~EF~~~l~~l~-~~~~eeel~~lF~~~D~D~dG--~Is~eEF~~~l~ 1276 (2014)
.++.++.....+.+| ++..+....+..+. ....-+.+..+|...+.+.-. .++ +||..-+.
T Consensus 102 ~ir~~i~k~~~~~~~-~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~disild-~eFl~~v~ 165 (335)
T PF11867_consen 102 AIRAAIRKLYSDDDG-PDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKPDISILD-DEFLEEVK 165 (335)
T ss_pred HHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCCChhhcC-HHHHHHHH
Confidence 355666666555555 77888777776632 222333455667666543321 233 45554443
No 283
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=21.04 E-value=1e+02 Score=25.23 Aligned_cols=22 Identities=5% Similarity=0.007 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy5584 1586 SHIQFHKIAACTALFFSLIHTV 1607 (2014)
Q Consensus 1586 ~~~~~Hr~ig~~~~~~~~lH~i 1607 (2014)
.+...|+|+|.++.++.++=.+
T Consensus 3 ~~~~~H~W~Gl~~g~~l~~~~~ 24 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLLLFVIFL 24 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999998877655443
No 284
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=20.93 E-value=6e+02 Score=27.09 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=57.2
Q ss_pred ceeHHHHHHHHHHHh-------cCCcHHHHHHHHhhhcCCC--CCeeeHHHHHHHHHHHHHhhcC-C-CCCH-------H
Q psy5584 1388 RISFQEFLDTVVLFS-------RGHTEDKLRIIFDMCDNDR--NGVIDKGELAEMLRSLVEMART-T-SLTD-------S 1449 (2014)
Q Consensus 1388 ~Isf~EFl~~l~~~~-------~~~~~e~l~~~F~~~D~Dg--dG~Is~eEf~~~L~~l~~~~~~-~-~ls~-------~ 1449 (2014)
.|-|.-|..+++... ...+-..+..+|+....+. |..|+..|+..++.++....+. . ...+ .
T Consensus 14 ~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~ 93 (127)
T PF09068_consen 14 NIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDL 93 (127)
T ss_dssp T-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----H
T ss_pred hHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHH
Confidence 477778876665421 1233456777888776554 4779999999999998742221 0 1111 3
Q ss_pred HHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy5584 1450 QVTELIDGMFQDAGLDSKDFLTYQDFKLMMR 1480 (2014)
Q Consensus 1450 e~~~li~~if~~~D~d~dG~Is~eEF~~~l~ 1480 (2014)
-++-.+.-++..+|.++.|.|+.-.|+..+.
T Consensus 94 a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 94 AVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 3455677889999999999999999987664
No 285
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=20.81 E-value=44 Score=41.03 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=37.7
Q ss_pred EeecChhHHHHHHHHHhhcccccccccccccccHHHHHHhhcCHHHHHH
Q psy5584 1112 LEFDSLAARKKFMNKMEGFLNAMKKHLIIVQSPRELMLAKAETRERRQK 1160 (2014)
Q Consensus 1112 lPF~~~~~~~~~~~Il~~~~~f~~~~~~~vs~~~kdli~~~L~~~~~~r 1160 (2014)
.||.+.+..+.+..++++.+.+. ..++.++++++++||..+|.+|
T Consensus 191 ~pf~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~L~~dp~~R 235 (312)
T cd05585 191 PPFYDENVNEMYRKILQEPLRFP----DGFDRDAKDLLIGLLSRDPTRR 235 (312)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCC----CcCCHHHHHHHHHHcCCCHHHc
Confidence 58888888888888888766654 4688999999999999999999
No 286
>smart00720 calpain_III calpain_III.
Probab=20.68 E-value=58 Score=35.18 Aligned_cols=44 Identities=7% Similarity=0.048 Sum_probs=32.1
Q ss_pred CeeEEEeCCCCCeEEEEEcccCCCCCCCCeEEEEEccCcceEEeecChh--HHHHHHHHHh
Q psy5584 1070 EKLRTVNFKNCDTVTIEESQPERGKKKHPMVLIRVHRDHDLVLEFDSLA--ARKKFMNKME 1128 (2014)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlPF~~~~--~~~~~~~Il~ 1128 (2014)
.+..+-+|.+.++|...+ +||+|.|+|+|.+.+. ++++.++|+.
T Consensus 91 ~~~~s~~y~~~r~v~~~~---------------~L~~G~Y~iVPsT~~p~~~g~F~LrV~s 136 (143)
T smart00720 91 PRASSGDYINGREVSERF---------------RLPPGEYVIVPSTFEPNQEGDFLLRVFS 136 (143)
T ss_pred ccccccccccCeEEEEEE---------------EcCCCCEEEEEeecCCCCccCEEEEEEe
Confidence 334455788888888877 8999999999988765 4555555544
No 287
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=20.50 E-value=4.4e+02 Score=26.04 Aligned_cols=69 Identities=14% Similarity=0.307 Sum_probs=48.3
Q ss_pred ceeHHHHHHHHHHHhcCCcHHHHHHHHhhhcCCCCCeeeHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHc
Q psy5584 1388 RISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDA 1462 (2014)
Q Consensus 1388 ~Isf~EFl~~l~~~~~~~~~e~l~~~F~~~D~DgdG~Is~eEf~~~L~~l~~~~~~~~ls~~e~~~li~~if~~~ 1462 (2014)
.||.+|++.......-..+.+.++.+.+.+-.+.=.-.+.+|-..+++.+.. .++.+....++.+|..+
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~------iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAK------ITSPQTAKQVNELFEQF 82 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHH
Confidence 5888899888888877788888888888775555455678888888887763 34444444466666543
Done!