RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5584
(2014 letters)
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 759 bits (1961), Expect = 0.0
Identities = 269/558 (48%), Positives = 349/558 (62%), Gaps = 71/558 (12%)
Query: 422 GQVVSSEIVMASESGCPIEMHEIEIEKCDEMYDKDCEGGKYIPFHRAGYDRSTGTSPNSP 481
GQ V SEI+ AS GCP E IEI K D ++D +C G +PF R+ YD++TG SPN+P
Sbjct: 71 GQHVVSEILDASRPGCPPEYFNIEIPKGDPVFDPECTGNIELPFQRSRYDKNTGYSPNNP 130
Query: 482 RQQINRVSSWIDGSFIYSTSEAWLNAMRSFTNGSLATDASGKMPVKNTMRVPLFNNPVPH 541
R+Q+N V+SWIDGS IY +S+AW +A+RSF+ G LA+ G P +NT R+PL N P P
Sbjct: 131 REQLNEVTSWIDGSSIYGSSKAWSDALRSFSGGRLASGDDGGFPRRNTNRLPLANPPPPS 190
Query: 542 SLRTLSPERLYLLGDARSNQNPALLAFSILFFRWHNVIAAQIEDKHPELSDEEIFQKTRR 601
T PERL+ LG+ R N+NP LL F IL+FR+HN +A +I +HP+ SDE+IFQ+ R+
Sbjct: 191 YHGTRGPERLFKLGNPRGNENPFLLTFGILWFRYHNYLAQRIAREHPDWSDEDIFQEARK 250
Query: 602 LVVASLQNVIAYEYIPAFLGRSLSPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPGIYRR 661
V+A+ QN++ YE++PA LG ++ PY GYK V PGISH FQ AAFRFGH+L+PPG+YRR
Sbjct: 251 WVIATYQNIVFYEWLPALLGTNVPPYTGYKPHVDPGISHEFQAAAFRFGHTLVPPGVYRR 310
Query: 662 DEKCNFKPTVKGDPAPPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPGIYRRDEKCNFKP 721
+ +CNF
Sbjct: 311 NRQCNF-------------------------------------------------REVLT 321
Query: 722 TVKGDPAIRLCSNWWDSTNVDPAIRLCSNWWDSTNVMTYSTLEEILMGMASQLSEKEDAV 781
T G PA+RLC+ +W+S S ++E+L+GMASQ++E+ED +
Sbjct: 322 TSGGSPALRLCNTYWNSQEPLLK----------------SDIDELLLGMASQIAEREDNI 365
Query: 782 LCSDIRDKLFGPNEFSRRDLGALNIMRGRDNGIADYNTVRSNYNLKKLKSWNDLEAVNPA 841
+ D+RD LFGP EFSRRDL ALNI RGRD+G+ DYNT R + L +W+D+ NP
Sbjct: 366 IVEDLRDYLFGPLEFSRRDLMALNIQRGRDHGLPDYNTAREAFGLPPRTTWSDI---NPD 422
Query: 842 LFKEAHGKEILKRLKRSYGNSLDNIDLYIGGMLESHEG-PGPLFTNIILEQFTRLRDADR 900
LFK E+L+RL YGN L +DLY+GGMLES G PG LF IIL+QF RLRD DR
Sbjct: 423 LFK--KDPELLERLAELYGNDLSKLDLYVGGMLESKGGGPGELFRAIILDQFQRLRDGDR 480
Query: 901 FWFENTENGMFTAAEVEAIRKITLWDIIVNATDIGADAIQKNVFFWNATDPCPQPAQLNA 960
FWFEN +NG+FTA E+E IR TL D+I+ TDI +QKNVFFW DPCPQP QL
Sbjct: 481 FWFENVKNGLFTAEEIEEIRNTTLRDVILAVTDIDNTDLQKNVFFWKNGDPCPQPKQLTE 540
Query: 961 SMMMPCSYLKGFDYFEGS 978
+M+ PC+ L +DYFEGS
Sbjct: 541 NMLEPCTPLTVYDYFEGS 558
Score = 202 bits (516), Expect = 4e-55
Identities = 73/119 (61%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
Query: 163 YGNSLDNIDLYIGGMLESHEG-PGPLFTNIILEQFTRLRDADRFWFENTENGMFTAAEVE 221
YGN L +DLY+GGMLES G PG LF IIL+QF RLRD DRFWFEN +NG+FTA E+E
Sbjct: 438 YGNDLSKLDLYVGGMLESKGGGPGELFRAIILDQFQRLRDGDRFWFENVKNGLFTAEEIE 497
Query: 222 AIRKITLWDIIVNATDIGADAIQKNVFFWNATDPCPQPAQLNASMMMPCSYLKGFDYFE 280
IR TL D+I+ TDI +QKNVFFW DPCPQP QL +M+ PC+ L +DYFE
Sbjct: 498 EIRNTTLRDVILAVTDIDNTDLQKNVFFWKNGDPCPQPKQLTENMLEPCTPLTVYDYFE 556
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 439 bits (1132), Expect = e-137
Identities = 173/532 (32%), Positives = 247/532 (46%), Gaps = 98/532 (18%)
Query: 422 GQVVSSEIVMASESGC----PIEMHEIEIEKCDEMYDKDCEGGKYIPFHRAGYDRSTGTS 477
GQ + ++ S C E I + D + G+ +PF R+ TG S
Sbjct: 79 GQFIDHDLTFTPHSPCCADNHPECFPIPVPPGDPYFSP---FGRCLPFFRSAPACGTGPS 135
Query: 478 PNSPRQQINRVSSWIDGSFIYSTSEAWLNAMRSFTNGSLATDASGKMPVKNTMRVPLFNN 537
N PR+QIN+++S++D S +Y +SE + +R+F +G L + P N +
Sbjct: 136 CNLPREQINQLTSYLDLSQVYGSSEEEADKLRTFKDGKLKVNGEFPPP--NGKGLLPAPP 193
Query: 538 PVPHSLRTLSPERLYLLGDARSNQNPALLAFSILFFRWHNVIAAQIEDKHPELSDEEIFQ 597
P P +L GD+R N+NP L A LF R HN IA +++ +P SDE++FQ
Sbjct: 194 PGPSGCL-----SCFLAGDSRVNENPGLTALHTLFLREHNRIADELKALNPHWSDEKLFQ 248
Query: 598 KTRRLVVASLQNVIAYEYIPAFLGRSLSPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPG 657
+ R +V+A Q + EY+PA LG L
Sbjct: 249 EARLIVIAQYQKITYNEYLPALLGPDLMR------------------------------- 277
Query: 658 IYRRDEKCNFKPTVKGDPAPPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPGIYRRDEKC 717
Y GY +V P IS+ F TAA+RFGHSLIPPG+ R DE
Sbjct: 278 --------------ANWLLLYYTGYDPNVDPSISNEFATAAYRFGHSLIPPGLERLDE-- 321
Query: 718 NFKPTVKGDPAIRLCSNWWDSTNVDPAIRLCSNWWDSTNVMTYSTLEEILMGMASQLSEK 777
+ P I L +++ + ++ ++ +L G+ASQ +E
Sbjct: 322 --------------------FRTIAPEIPLHDTFFNPSRILE-EGIDPLLRGLASQPAEL 360
Query: 778 EDAVLCSDIRDKLFGPNEFSRR--DLGALNIMRGRDNGIADYNTVRSNYNLKKLKSWNDL 835
D L ++R++LFGP F DL ALNI RGRD+G+ YN R LK S+ DL
Sbjct: 361 LDNSLSDELRNRLFGPRNFPGSGLDLAALNIQRGRDHGLPPYNEYRRFCGLKPATSFEDL 420
Query: 836 EAVNPALFKEAHGKEILKRLKRSYGNSLDNIDLYIGGMLESHE---GPGPLFTNIILEQF 892
+ E E+ ++LK YG D+IDL++GG+ E GP F II EQF
Sbjct: 421 ---TDEIGDE----ELAEKLKELYG-DPDDIDLWVGGLAEKPVPGGLVGPTFACIIAEQF 472
Query: 893 TRLRDADRFWFENTENGMFTAAEVEAIRKITLWDIIVNATDIGADAIQKNVF 944
RLRD DRFW+EN G+FT ++E IRK TL +I + T G +Q N F
Sbjct: 473 LRLRDGDRFWYENP--GVFTGEQLEEIRKTTLARVICDNTP-GITRVQPNAF 521
Score = 112 bits (281), Expect = 3e-25
Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Query: 157 LRGYYSYGNSLDNIDLYIGGMLESHE---GPGPLFTNIILEQFTRLRDADRFWFENTENG 213
L+ Y D+IDL++GG+ E GP F II EQF RLRD DRFW+EN G
Sbjct: 433 LKELY---GDPDDIDLWVGGLAEKPVPGGLVGPTFACIIAEQFLRLRDGDRFWYENP--G 487
Query: 214 MFTAAEVEAIRKITLWDIIVNATDIGADAIQKNVF 248
+FT ++E IRK TL +I + T G +Q N F
Sbjct: 488 VFTGEQLEEIRKTTLARVICDNTP-GITRVQPNAF 521
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 311 bits (798), Expect = 5e-94
Identities = 155/475 (32%), Positives = 231/475 (48%), Gaps = 104/475 (21%)
Query: 477 SPNSPRQQINRVSSWIDGSFIYSTSEAWLNAMRSFTNGSLATDAS--GKMPVKNTMRVPL 534
+P++PR+QIN ++++IDGS +Y + E +A+RSF G L T + G + N +P
Sbjct: 43 TPDNPREQINAITAYIDGSNVYGSDEERADALRSFGGGKLKTSVANAGDLLPFNEAGLPN 102
Query: 535 FNNPVPHSLRTLSPERLYLLGDARSNQNPALLAFSILFFRWHNVIAAQIEDKHPELSDEE 594
N VP + L+L GD R+N+NP L A LF R HN +A ++ ++P LSDEE
Sbjct: 103 DNGGVP-------ADDLFLAGDVRANENPGLTALHTLFVREHNRLADELARRNPSLSDEE 155
Query: 595 IFQKTRRLVVASLQNVIAY-EYIPAFLGRSLSPYRGYKMDVHPGISHVFQTAAFRFGHSL 653
I+Q R +V+A +Q I Y E++PA L G +
Sbjct: 156 IYQAARAIVIAEIQ-AITYNEFLPALL-----------------------------GENA 185
Query: 654 IPPGIYRRDEKCNFKPTVKGDPAPPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPGIYRR 713
+P Y GY V+PGIS+ F TAA+RFGHS++ + R
Sbjct: 186 LPA----------------------YSGYDETVNPGISNEFSTAAYRFGHSMLSSELLRG 223
Query: 714 DEKCNFKPTVKGDPAIRLCSNWWDSTNVDPAIRLCSNWWDSTNVMTYSTLEEILMGMASQ 773
DE D T + L +++ + + ++ +L G+ASQ
Sbjct: 224 DE---------------------DGTEATS-LALRDAFFNPDELEE-NGIDPLLRGLASQ 260
Query: 774 LSEKEDAVLCSDIRDKLFGPNEFSRRDLGALNIMRGRDNGIADYNTVRSNYNLKKLKSWN 833
++++ D + D+R+ LFGP DL ALNI RGRD+G+ YN +R L + S++
Sbjct: 261 VAQEIDTFIVDDVRNFLFGPPGAGGFDLAALNIQRGRDHGLPSYNQLREALGLPAVTSFS 320
Query: 834 DLEAVNPALFKEAHGKEILKRLKRSYGNSLDNIDLYIGGMLESHEGP---GPLFTNIILE 890
D+ + + RL YG +D IDL++GG+ E H G F+ II +
Sbjct: 321 DI-------TSDPD---LAARLASVYG-DVDQIDLWVGGLAEDHVNGGLVGETFSTIIAD 369
Query: 891 QFTRLRDADRFWFENTENGMFTAAEVEAIRKITLWDIIVNATDIGADAIQKNVFF 945
QFTRLRD DRF++EN + E+ I TL D+I TD+ D IQ NVF
Sbjct: 370 QFTRLRDGDRFFYENDD---LLLDEIADIENTTLADVIRRNTDV--DDIQDNVFL 419
Score = 97.0 bits (242), Expect = 9e-21
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 9/90 (10%)
Query: 163 YGNSLDNIDLYIGGMLESHEGP---GPLFTNIILEQFTRLRDADRFWFENTENGMFTAAE 219
YG +D IDL++GG+ E H G F+ II +QFTRLRD DRF++EN + E
Sbjct: 336 YG-DVDQIDLWVGGLAEDHVNGGLVGETFSTIIADQFTRLRDGDRFFYENDD---LLLDE 391
Query: 220 VEAIRKITLWDIIVNATDIGADAIQKNVFF 249
+ I TL D+I TD+ D IQ NVF
Sbjct: 392 IADIENTTLADVIRRNTDV--DDIQDNVFL 419
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 289 bits (741), Expect = 6e-87
Identities = 138/452 (30%), Positives = 210/452 (46%), Gaps = 82/452 (18%)
Query: 482 RQQINRVSSWIDGSFIYSTSEAWLNAMRSFTNGSLATDASGKMPVKNTMRVPLFNNPVPH 541
R+Q+N+V+S++DGS +Y +SE +R+F G L T +P NNP
Sbjct: 1 REQLNQVTSFLDGSQVYGSSEEEARKLRTFKGGLLKTQR-----RNGRELLPFSNNPTDD 55
Query: 542 SLRTLSPERLYLLGDARSNQNPALLAFSILFFRWHNVIAAQIEDKHPELSDEEIFQKTRR 601
+ + + +L GD R N+ P L + LF R HN IA +++ +P DE +FQ+ R+
Sbjct: 56 CSLSSAGKPCFLAGDGRVNEQPGLTSMHTLFLREHNRIADELKKLNPHWDDERLFQEARK 115
Query: 602 LVVASLQNVIAYEYIPAFLGRSLSPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPGIYRR 661
+V+A +Q++ E++P LGR L M+ +FG L
Sbjct: 116 IVIAQMQHITYNEFLPILLGREL-------ME--------------KFG--LYLL----- 147
Query: 662 DEKCNFKPTVKGDPAPPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPGIYRRDEKCNFKP 721
+ + GY +V P I + F AAFRFGHSL+P R DE
Sbjct: 148 -------------TSGYFNGYDPNVDPSILNEFAAAAFRFGHSLVPGTFERLDENY---- 190
Query: 722 TVKGDPAIRLCSNWWDSTNVDPAIRLCSNWWDSTNVMTYSTLEEILMGMASQLSEKEDAV 781
++ L +++ + L+ +L G+A+Q ++K D
Sbjct: 191 ------------------RPQGSVNLHDLFFNPDRLYEEGGLDPLLRGLATQPAQKVDRF 232
Query: 782 LCSDIR-DKLFGPNEFSRRDLGALNIMRGRDNGIADYNTVRSNYNLKKLKSWNDLEAVNP 840
++ F DL ALNI RGRD+G+ YN R L + +++DL
Sbjct: 233 FTDELTTHFFFRGGNPFGLDLAALNIQRGRDHGLPGYNDYREFCGLPRATTFDDL----- 287
Query: 841 ALFKEAHGKEILKRLKRSYGNSLDNIDLYIGGMLESH-EGP--GPLFTNIILEQFTRLRD 897
E +++L+R Y S+D+IDLY+GG+ E G GP F II EQF RLR
Sbjct: 288 ---LGIMSPETIQKLRRLY-KSVDDIDLYVGGLSEKPVPGGLVGPTFACIIGEQFRRLRR 343
Query: 898 ADRFWFENT-ENGMFTAAEVEAIRKITLWDII 928
DRFW+EN + FT A++ IRK++L II
Sbjct: 344 GDRFWYENGGQPSSFTPAQLNEIRKVSLARII 375
Score = 83.8 bits (208), Expect = 1e-16
Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 165 NSLDNIDLYIGGMLESH-EGP--GPLFTNIILEQFTRLRDADRFWFENT-ENGMFTAAEV 220
S+D+IDLY+GG+ E G GP F II EQF RLR DRFW+EN + FT A++
Sbjct: 304 KSVDDIDLYVGGLSEKPVPGGLVGPTFACIIGEQFRRLRRGDRFWYENGGQPSSFTPAQL 363
Query: 221 EAIRKITLWDII 232
IRK++L II
Sbjct: 364 NEIRKVSLARII 375
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 286 bits (733), Expect = 4e-86
Identities = 139/454 (30%), Positives = 196/454 (43%), Gaps = 92/454 (20%)
Query: 484 QINRVSSWIDGSFIYSTSEAWLNAMRSFTNGSLATDASGKMPVKNTMRVPLFNNPVPHSL 543
Q+N + ++DGS IY ++ A+R+F G L T+ + L N S+
Sbjct: 1 QLNARTPYLDGSSIYGSNPDVARALRTFKGGLLKTNEVKGP---SYGTELLPFNNPNPSM 57
Query: 544 RT--LSPERLYLLGDARSNQNPALLAFSILFFRWHNVIAAQIEDKHPELSDEEIFQKTRR 601
T L P R ++ GD R N+N LLA LF R HN +A +++ +HPE DE ++Q+ R
Sbjct: 58 GTIGLPPTRCFIAGDPRVNENLLLLAVHTLFLREHNRLADRLKKEHPEWDDERLYQEARL 117
Query: 602 LVVASLQNVIAYEYIPAFLGRSLSPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPGIYRR 661
+V+A Q + EY+PA LG + R
Sbjct: 118 IVIAQYQLITYNEYLPAILG---------------------KFTDPRDD----------- 145
Query: 662 DEKCNFKPTVKGDPAPPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPGIYRRDEKCNFKP 721
DV P + F TAA+RFGHSL+P G+ R DE K
Sbjct: 146 ---------------LVLLFPDPDVVPYVLSEFFTAAYRFGHSLVPEGVDRIDENGQPKE 190
Query: 722 TVKGDPAIRLCSNWWDSTNVDPAIRLCSNWWDSTNVMTYST-LEEILMGMASQLSEKEDA 780
P + L +++++ + T L+ +L G Q + D
Sbjct: 191 --------------------IPDVPLKDFFFNTSRSILSDTGLDPLLRGFLRQPAGLIDQ 230
Query: 781 VLCSDIRDKLFGPNEFSRRDLGALNIMRGRDNGIADYNTVRSNYNLKKLKSWNDLEAVNP 840
+ LFGP E DL ALNI RGRD G+ YN VR LK S+ D+
Sbjct: 231 NVDDV--MFLFGPLEGVGLDLAALNIQRGRDLGLPSYNEVRRFIGLKPPTSFQDI----- 283
Query: 841 ALFKEAHGKEILKRLKRSYGNSLDNIDLYIGGMLESHEGP---GPLFTNIILEQFTRLRD 897
L E+ K+L YG D++DL++GG+LE P G L IILEQF RL D
Sbjct: 284 -LTDP----ELAKKLAELYG-DPDDVDLWVGGLLEKKVPPARLGELLATIILEQFKRLVD 337
Query: 898 ADRFWFEN-TENGMFTAAEVEAIRKITLWDIIVN 930
DRF++ N G E+E + I+L DII
Sbjct: 338 GDRFYYVNYNPFGKSGKEELEKL--ISLADIICL 369
Score = 67.8 bits (166), Expect = 2e-11
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 163 YGNSLDNIDLYIGGMLESHEGP---GPLFTNIILEQFTRLRDADRFWFEN-TENGMFTAA 218
YG D++DL++GG+LE P G L IILEQF RL D DRF++ N G
Sbjct: 297 YG-DPDDVDLWVGGLLEKKVPPARLGELLATIILEQFKRLVDGDRFYYVNYNPFGKSGKE 355
Query: 219 EVEAIRKITLWDIIVN 234
E+E + I+L DII
Sbjct: 356 ELEKL--ISLADIICL 369
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 239 bits (611), Expect = 9e-69
Identities = 141/486 (29%), Positives = 223/486 (45%), Gaps = 115/486 (23%)
Query: 480 SPRQQINRVSSWIDGSFIYSTSEAWLNAMRSFTN--GSLATDA---SGK--MPVKNTMRV 532
+PR+QIN+++S+ID S +Y +S+ +R + G L +GK +P
Sbjct: 35 TPREQINQLTSYIDASNVYGSSDEEALELRDLASDRGLLRVGIVSEAGKPLLP------- 87
Query: 533 PLFNNPVPHSLRTL---SPERLYLLGDARSNQNPALLAFSILFFRWHNVIAAQIEDKHPE 589
F P R SP +L GD R+N+ L + L+ R HN IA+++ + +P
Sbjct: 88 --FERDSPMDCRRDPNESPIPCFLAGDHRANEQLGLTSMHTLWLREHNRIASELLELNPH 145
Query: 590 LSDEEIFQKTRRLVVASLQNVIAYEYIPAFLGRSLSPYRGYKMDVHPGISHVFQTAAFRF 649
E I+ +TR++V A +Q++ ++P LG G +M
Sbjct: 146 WDGETIYHETRKIVGAQMQHITYSHWLPKILGPV-----GMEM----------------- 183
Query: 650 GHSLIPPGIYRRDEKCNFKPTVKGDPAPPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPG 709
YRGY +V+P I++ F TAAFRFGH+LI P
Sbjct: 184 --------------------------LGEYRGYNPNVNPSIANEFATAAFRFGHTLINPI 217
Query: 710 IYRRDEKCNFKPTVKGDPAI--------RLCSNWWDSTNVDPAIRLCSNWWDSTNVMTYS 761
++R DE +F+P +G + RL + +DP +R
Sbjct: 218 LFRLDE--DFQPIPEGHLPLHKAFFAPYRLVN----EGGIDPLLRG-------------- 257
Query: 762 TLEEILMGMASQLSEKEDAVLCSDIRDKLFGPNEFSRRDLGALNIMRGRDNGIADYNTVR 821
L A++ D +L +++ +KLF DL ALNI RGRD+G+ YN R
Sbjct: 258 -----LFATAAKD-RVPDQLLNTELTEKLFEMAHEVALDLAALNIQRGRDHGLPGYNDYR 311
Query: 822 SNYNLKKLKSWNDLEAVNPALFKEAHGKEILKRLKRSYGNSLDNIDLYIGGMLES--HEG 879
NL +++ DL+ E ++ ++LKR YG NIDL++GG+LE
Sbjct: 312 KFCNLSVAETFEDLKN-------EIKNDDVREKLKRLYG-HPGNIDLFVGGILEDLLPGA 363
Query: 880 P-GPLFTNIILEQFTRLRDADRFWFENTENGMFTAAEVEAIRKITLWDIIVNATDIGADA 938
GP ++ EQF RLRD DRFW+EN G+F+ A++ I+K +L ++ + D
Sbjct: 364 RVGPTLACLLAEQFRRLRDGDRFWYEN--PGVFSPAQLTQIKKTSLARVLCDNGD-NITR 420
Query: 939 IQKNVF 944
+Q++VF
Sbjct: 421 VQEDVF 426
Score = 86.6 bits (215), Expect = 3e-17
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Query: 163 YGNSLDNIDLYIGGMLES--HEGP-GPLFTNIILEQFTRLRDADRFWFENTENGMFTAAE 219
YG NIDL++GG+LE GP ++ EQF RLRD DRFW+EN G+F+ A+
Sbjct: 342 YG-HPGNIDLFVGGILEDLLPGARVGPTLACLLAEQFRRLRDGDRFWYEN--PGVFSPAQ 398
Query: 220 VEAIRKITLWDIIVNATDIGADAIQKNVF 248
+ I+K +L ++ + D +Q++VF
Sbjct: 399 LTQIKKTSLARVLCDNGD-NITRVQEDVF 426
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 196 bits (501), Expect = 1e-54
Identities = 135/498 (27%), Positives = 221/498 (44%), Gaps = 98/498 (19%)
Query: 472 RSTGTSPNSPRQQINRVSSWIDGSFIYSTSEAWLNAMRSFTN--GSLATDASGKMPVKNT 529
TS + R+QIN ++S++D S +Y + + +R+ TN G LA + N
Sbjct: 2 CGACTSKRNVREQINALTSFVDASMVYGSEPSLAKXLRNLTNQLGLLAVNQRFT---DNG 58
Query: 530 MRVPLFNNPVPH---SLRTLSPERLYLLGDARSNQNPALLAFSILFFRWHNVIAAQIEDK 586
+ + F N T + +L GD R ++NP L A L R HN +A ++
Sbjct: 59 LALLPFENLHNDPCALRNTSANIPCFLAGDTRVSENPGLAALHTLLLREHNRLARELHRL 118
Query: 587 HPELSDEEIFQKTRRLVVASLQNVIAYEYIPAFLGRSLSPYRGYKMDVHPGISHVFQTAA 646
+P E ++Q+ R++V A +Q + +Y+P LG
Sbjct: 119 NPHWDGETLYQEARKIVGAMVQIITYRDYLPLILG------------------------- 153
Query: 647 FRFGHSLIPPGIYRRDEKCNFKPTVKGDPAPPYRGYKMDVHPGISHVFQTAAFRFGHSLI 706
R PPYRGY V P I++VF T AFR GH+ +
Sbjct: 154 ---------EDAAAR--------------LPPYRGYNESVDPRIANVF-TTAFRRGHTTV 189
Query: 707 PPGIYRRDEKCNFKPTVKGDPAIRLCSNWWDSTNVDPAIRLCSNWWDSTNVMTYSTLEEI 766
P ++R DE N++P +P + L ++ S ++ ++ I
Sbjct: 190 QPFVFRLDE--NYQPHPP-----------------NPQVPLHKAFFASWRIIREGGIDPI 230
Query: 767 LMGMASQLSEK--EDAVLCSDIRDKLFGPNEFSRRDLGALNIMRGRDNGIADYNTVRSNY 824
L G+ + ++ ++ +L ++R++LF + DL ALN+ RGRD+G+ YN R
Sbjct: 231 LRGLMATPAKLNNQNQMLVDELRERLFQQTKRMGLDLAALNLQRGRDHGLPGYNAWRRFC 290
Query: 825 NLKKLKSWNDLEAVNPALFKEAHGKEILKRLKRSYGNSLDNIDLYIGGMLES--HEGP-G 881
L + ++ +L AV + + ++L YG + DNID++IGG+ E G G
Sbjct: 291 GLSQPQNLAELAAV-------LNNTVLARKLLDLYG-TPDNIDIWIGGVAEPLVPGGRVG 342
Query: 882 PLFTNIILEQFTRLRDADRFWFENTENGMFTAAEVEAIRKITLWDIIVNATDIGADAIQK 941
PL +I QF R+RD DRFW+EN G+FT + E++R ++L II + T I +
Sbjct: 343 PLLACLISRQFRRIRDGDRFWWEN--PGVFTEEQRESLRSVSLSRIICDNTGITKVP--R 398
Query: 942 NVFFWNATDPCPQPAQLN 959
+ F P P
Sbjct: 399 DPFQ-----PNSYPRDFV 411
Score = 74.8 bits (184), Expect = 2e-13
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 12/99 (12%)
Query: 168 DNIDLYIGGMLES--HEGP-GPLFTNIILEQFTRLRDADRFWFENTENGMFTAAEVEAIR 224
DNID++IGG+ E G GPL +I QF R+RD DRFW+EN G+FT + E++R
Sbjct: 322 DNIDIWIGGVAEPLVPGGRVGPLLACLISRQFRRIRDGDRFWWEN--PGVFTEEQRESLR 379
Query: 225 KITLWDIIVNATDIGADAIQKNVFFWNATDPCPQPAQLN 263
++L II + T I ++ F P P
Sbjct: 380 SVSLSRIICDNTGITKVP--RDPFQ-----PNSYPRDFV 411
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 196 bits (501), Expect = 4e-53
Identities = 145/534 (27%), Positives = 223/534 (41%), Gaps = 101/534 (18%)
Query: 423 QVVSSEIVMAS---ESGCPIEMHEIEIEKCDEMYDKDCEGGKYIPFHRAG-----YDRST 474
Q VS + + S + C + I+ E D G +PF R+ D ST
Sbjct: 80 QSVSRTMFIGSTDCKMTCENQNPCFPIQLPSE--DPRILGRACLPFFRSSAVCGTGDTST 137
Query: 475 ---GTSPNSPRQQINRVSSWIDGSFIYSTSEAWLNAMRSFTNGSLATDASGKMPVKNTMR 531
S +PR+QIN ++S+ID S +Y ++ A ++R ++ + K
Sbjct: 138 LFGNLSLANPREQINGLTSFIDASTVYGSTLALARSLRDLSSDDGLLRVNSKFDDSGRDY 197
Query: 532 VPLFNNPVPHSLRTLSPE----RLYLLGDARSNQNPALLAFSILFFRWHNVIAAQIEDKH 587
+P F S +L GD R+++ L A L+ R HN +A ++ +
Sbjct: 198 LP-FQPEEVSSCNPDPNGGERVPCFLAGDGRASEVLTLTASHTLWLREHNRLARALKSIN 256
Query: 588 PELSDEEIFQKTRRLVVASLQNVIAYEYIPAFLGRSLSPYRGYKMDVHPGISHVFQTAAF 647
P E+I+Q+ R++V A Q + +YIP LG D + G
Sbjct: 257 PHWDGEQIYQEARKIVGALHQIITFRDYIPKILGPE-------AFDQYGG---------- 299
Query: 648 RFGHSLIPPGIYRRDEKCNFKPTVKGDPAPPYRGYKMDVHPGISHVFQTAAFRFGHSLIP 707
Y GY V+P +S+VF TAAFRFGH+ I
Sbjct: 300 ------------------------------YYEGYDPTVNPTVSNVFSTAAFRFGHATIH 329
Query: 708 PGIYRRDEKCNFKPTVKGDPAIRLC-SNW--WDSTNVDPAIRLCSNWWDSTNVMTYSTLE 764
P + R DE P + S W +DP IR
Sbjct: 330 PTVRRLDENFQEHPVLPNLALHDAFFSPWRLVREGGLDPVIRG----------------- 372
Query: 765 EILMGMASQLSEKEDAVLCSDIRDKLFGPNEFSRRDLGALNIMRGRDNGIADYNTVRSNY 824
L+G ++L D ++ ++ +KLF + S DL +LN+ RGRD+G+ YN R
Sbjct: 373 --LIGGPAKL-VTPDDLMNEELTEKLFVLSNSSTLDLASLNLQRGRDHGLPGYNDWREFC 429
Query: 825 NLKKLKSWNDLEAVNPALFKEAHGKEILKRLKRSYGNSLDNIDLYIGGMLESHE---GPG 881
L +L + DL A+ +A +IL K DNID+++GG+ E G
Sbjct: 430 GLPRLATPADL---ATAIADQAVADKILDLYKHP-----DNIDVWLGGLAEDFLPGARTG 481
Query: 882 PLFTNIILEQFTRLRDADRFWFENTENGMFTAAEVEAIRKITLWDIIVNATDIG 935
PLF +I +Q LRD DRFW+EN + +FT A+ +RK +L +I + T +
Sbjct: 482 PLFACLIGKQMKALRDGDRFWWEN--SNVFTDAQRRELRKHSLSRVICDNTGLT 533
Score = 76.7 bits (189), Expect = 7e-14
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 168 DNIDLYIGGMLESHE---GPGPLFTNIILEQFTRLRDADRFWFENTENGMFTAAEVEAIR 224
DNID+++GG+ E GPLF +I +Q LRD DRFW+EN + +FT A+ +R
Sbjct: 461 DNIDVWLGGLAEDFLPGARTGPLFACLIGKQMKALRDGDRFWWEN--SNVFTDAQRRELR 518
Query: 225 KITLWDIIVNATDIG 239
K +L +I + T +
Sbjct: 519 KHSLSRVICDNTGLT 533
>gnl|CDD|99783 cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NOX) catalyzes the
generation of reactive oxygen species (ROS) such as
superoxide and hydrogen peroxide. ROS were originally
identified as bactericidal agents in phagocytes, but are
now also implicated in cell signaling and metabolism. NOX
has a 6-alpha helix heme-binding transmembrane domain
fused to a flavoprotein with the nucleotide binding
domain located in the cytoplasm. Duox enzymes link a
peroxidase domain to the NOX domain via a single
transmembrane and EF-hand Ca2+ binding sites. The
flavoprotein module has a ferredoxin like FAD/NADPH
binding domain. In classical phagocytic NOX2, electron
transfer occurs from NADPH to FAD to the heme of cytb to
oxygen leading to superoxide formation.
Length = 210
Score = 154 bits (391), Expect = 2e-42
Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 14/185 (7%)
Query: 1740 ELLP-SDVIKIRFYRPPNFTYHSGQWVRLACTAFKNA-AYHSFTLTSAPHE--NFLSCHI 1795
ELLP SDVI++ +P F + GQ V L + + H FT+ S+P + + LS I
Sbjct: 5 ELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLII 64
Query: 1796 KAQ-GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPY 1854
+A+ G T LR S K+ +EGP+G ++D ++ ++V GG G+T
Sbjct: 65 RAKKGFTTRLLRKALKSPGGGVS---LKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFV 121
Query: 1855 ASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIF 1914
IL DL+ +S ++V +W+ + EWF+D LR +++ EI I+
Sbjct: 122 LPILRDLLRRSSK----TSRTRRVKLVWVVRDREDLEWFLDELR--AAQELEVDGEIEIY 175
Query: 1915 ITQFF 1919
+T+
Sbjct: 176 VTRVV 180
Score = 33.8 bits (78), Expect = 0.67
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 1972 YVSKIGVFSCGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013
YV+ V CGP L + +A + H E+F
Sbjct: 175 YVT--RVVVCGPPGLVDDVRNAVAKKGGTG----VEFHEESF 210
>gnl|CDD|203841 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain.
Length = 149
Score = 103 bits (258), Expect = 3e-25
Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 1839 FEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLR 1898
+E ++V GGIG+TP+ SIL DL N+ + KK+ F W EWF DVL
Sbjct: 1 YENVLLVAGGIGITPFISILKDLG-----NKSKALKTKKIKFYWAVRDLSSLEWFKDVLN 55
Query: 1899 DVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVNHFGRPD 1958
++E+ +EIHI++T + D + F + +G + HFGRP+
Sbjct: 56 ELEELKELGNIEIHIYLTGEYEAEDASDASDSEQISMFDSKNH-EEISGTRVEFHFGRPN 114
Query: 1959 MSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSAC 1994
LK + K+H + IGVF CGP L + +
Sbjct: 115 WKEVLKDIAKQHPN-NSIGVFCCGPPSLVDELRNLV 149
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 108 bits (271), Expect = 8e-24
Identities = 117/575 (20%), Positives = 182/575 (31%), Gaps = 177/575 (30%)
Query: 468 AGYDRSTGTSPNSPRQQINRVSSWIDGSFIYSTSEAWLNAMRSFT-----NGSLATDASG 522
AG D GT+ N + ++D + Y + + +R + G L A+G
Sbjct: 68 AGPDGILGTADGEGEHT-NVTTPFVDQNQTYGSHASHQVFLREYDGDGVATGRLLEGATG 126
Query: 523 KM----------------PVKNTMRVPLFNNPVPHSLR---TLSPERL---YLLGDARSN 560
P + P + E L ++ GD R N
Sbjct: 127 GSARTGHAFLDDIAHNAAPKGGLGSLRDNPTEDPPGPGAPGSYDNELLDAHFVAGDGRVN 186
Query: 561 QNPALLAFSILFFRWHNVIAAQIED--------------KHPELSD--EEIFQKTRRLVV 604
+N L A +F R HN + QI+D L+ E +FQ R
Sbjct: 187 ENIGLTAVHTVFHREHNRLVDQIKDTLLQSADLAFANEAGGNNLAWDGERLFQAARFANE 246
Query: 605 ASLQNVIAYEYIPAFLGRSLSPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPGIYRRDEK 664
Q+++ E+ R + P + S
Sbjct: 247 MQYQHLVFEEF-----ARRIQP------GIDGFGSFN----------------------- 272
Query: 665 CNFKPTVKGDPAPPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPGIYRRDEKCNFKPTVK 724
GY +++P IS F A +RFGHS++ + R +
Sbjct: 273 ----------------GYNPEINPSISAEFAHAVYRFGHSMLTETVTRIGPDADEGLDN- 315
Query: 725 GDPAIRLCSNWWDSTNVDPAIRLCSNWWDSTNVMTYSTLE---EILMGMASQLSEKEDAV 781
+ L + + PA T E IL GM Q+ + D
Sbjct: 316 ---QVGLIDAFLNPVAFLPA--------------TLYAEEGAGAILRGMTRQVGNEIDEF 358
Query: 782 LCSDIRDKLFG-PNEFSRRDLGALNIMRGRDNGIADYNTVR--------SNYNLKKLKSW 832
+ +R+ L G P DL ALNI RGRD G+ N R +SW
Sbjct: 359 VTDALRNNLVGLPL-----DLAALNIARGRDTGLPTLNEARAQLFAATGDTILKAPYESW 413
Query: 833 ND--------------------------------LEAVNPALFKEAHGKEILKRLKRSYG 860
ND A L G + +
Sbjct: 414 NDFGARLKNPESLINFIAAYGTHLTITGATTLAAKRAAAQDLVDGGDGAPADRADFMNAA 473
Query: 861 NS-------LDNIDLYIGGMLESHE-GPGPL---FTNIILEQFTRLRDADRFWFENTENG 909
+ LDN+DL++GG+ E G L F + EQ RL+D DRF++ + G
Sbjct: 474 GAGAGTVKGLDNVDLWVGGLAEKQVPFGGMLGSTFNFVFEEQMDRLQDGDRFYYLSRTAG 533
Query: 910 MFTAAEVEAIRKITLWDIIVNATDIGADAIQKNVF 944
+ ++E T D+I+ T GA + +++F
Sbjct: 534 LDLLNQLE---NNTFADMIMRNT--GATHLPQDIF 563
Score = 52.4 bits (126), Expect = 2e-06
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 167 LDNIDLYIGGMLESHE-GPGPL---FTNIILEQFTRLRDADRFWFENTENGMFTAAEVEA 222
LDN+DL++GG+ E G L F + EQ RL+D DRF++ + G+ ++E
Sbjct: 483 LDNVDLWVGGLAEKQVPFGGMLGSTFNFVFEEQMDRLQDGDRFYYLSRTAGLDLLNQLE- 541
Query: 223 IRKITLWDIIVNATDIGADAIQKNVF 248
T D+I+ T GA + +++F
Sbjct: 542 --NNTFADMIMRNT--GATHLPQDIF 563
>gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase.
Length = 699
Score = 103 bits (257), Expect = 5e-22
Identities = 86/341 (25%), Positives = 156/341 (45%), Gaps = 45/341 (13%)
Query: 1585 DSHIQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGITF- 1643
+S I++H + F L+HTV +I ++ + + +E TF
Sbjct: 186 ESSIKYHIWLGHVSNFLFLVHTVVFLI-YWAMINKLME-------------------TFA 225
Query: 1644 WLFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHGLARIT 1703
W + + G + VI + ++V + P+ R+K + F+ H LY +IH
Sbjct: 226 WNPTYVPNLAGTIAMVIGIAMWVTSLPSFRRKKFELFFYTHHLYGLYIVFYVIH-----V 280
Query: 1704 GPPRFWIYFIGPGV-VFILDKVVSLRTKYMALDILETELLPSDVIKIRFYRPPNFTYHSG 1762
G W I P + +F +D+ + ++ +LPSD +++ F + P Y
Sbjct: 281 GDS--WFCMILPNIFLFFIDRYLRFLQSTKRSRLVSARILPSDNLELTFSKTPGLHYTPT 338
Query: 1763 QWVRLACTAFKNAAYHSFTLTSAPH--ENFLSCHIKAQGPWTWKLRNYFDPCNFNASEDQ 1820
+ L + +H FT+TS+ + ++ LS I+ QG WT KL + ++S D
Sbjct: 339 SILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHL-----SSSIDS 393
Query: 1821 PKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYF 1880
++ EGP+G + D + ++V GG G+TP+ S++ +L+F S N S K
Sbjct: 394 LEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIF-QSQNP----STKLPDV 448
Query: 1881 LWICP-SHKHFEWFIDVL--RDVEKKDVTNV-LEIHIFITQ 1917
L +C H H F+D++ D+ D++ + L I +IT+
Sbjct: 449 LLVCSFKHYHDLAFLDLIFPLDISVSDISRLNLRIEAYITR 489
>gnl|CDD|215453 PLN02844, PLN02844, oxidoreductase/ferric-chelate reductase.
Length = 722
Score = 93.8 bits (233), Expect = 5e-19
Identities = 73/298 (24%), Positives = 136/298 (45%), Gaps = 39/298 (13%)
Query: 1582 IPLDSHIQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGI 1641
I ++ +++H + +FF+ +H + + +S H + E+
Sbjct: 186 IQFEASVRYHVWLGTSMIFFATVHGASTLF-IWGIS-------HHIQDEI---------- 227
Query: 1642 TFWLFQTITG---ITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHG 1698
W +Q TG + G + V ++I++ + P IR+K + F+ H LY+ L H
Sbjct: 228 --WKWQK-TGRIYLAGEIALVTGLVIWITSLPQIRRKRFEIFYYTHHLYIVFLIFFLFHA 284
Query: 1699 LARITGPPRFWIYFIGPGV-VFILDKVVSLRTKYMALDILETELLPSDVIKIRFYRPPNF 1757
G F Y + PG+ +F LDK++ + IL L P I++ + P
Sbjct: 285 -----GDRHF--YMVFPGIFLFGLDKLLRIVQSRPETCILSARLFPCKAIELVLPKDPGL 337
Query: 1758 TYHSGQWVRLACTAFKNAAYHSFTLTSAPH--ENFLSCHIKAQGPWTWKLRNYFDP---C 1812
Y + + + +H F++TS+ + ++ +S IK +G WT L N
Sbjct: 338 KYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELDS 397
Query: 1813 NFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRY 1870
N P + +EGP+G + D+ +++ ++V GGIG+TP+ SIL ++ S++RY
Sbjct: 398 ETNQMNCIP-VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIA-SQSSSRY 453
Score = 41.8 bits (98), Expect = 0.004
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 1953 HFG-RPDMSS-FLKFVQKKHSYVSKIGVFSCGPRPLTKSIMSACEEV-------NKGRKL 2003
HFG RP+ F KF K + S IGV CGP + +S+ S C + G++
Sbjct: 653 HFGGRPNFQDIFSKF--PKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKRK 710
Query: 2004 PYFIHHFENF 2013
YF H NF
Sbjct: 711 MYFSFHSLNF 720
>gnl|CDD|215165 PLN02292, PLN02292, ferric-chelate reductase.
Length = 702
Score = 93.0 bits (231), Expect = 8e-19
Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 24/247 (9%)
Query: 1644 WLFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHGLARIT 1703
W ++ + G + V ++++ +P IR++ + F+ H LY+ + H
Sbjct: 243 WDRTGVSNLAGEIALVAGLVMWATTYPKIRRRFFEVFFYTHYLYIVFMLFFVFH-----V 297
Query: 1704 GPPRFWIYFIGPGV-VFILDKVVSLRTKYMALDILETELLPSDVIKIRFYRPPNFTYHSG 1762
G I F PG +F++D+ + + ++ +LP D +++ F + P Y
Sbjct: 298 GISFALISF--PGFYIFLVDRFLRFLQSRNNVKLVSARVLPCDTVELNFSKNPMLMYSPT 355
Query: 1763 QWVRLACTAFKNAAYHSFTLTSAP--HENFLSCHIKAQGPWTWKLRNYFDPCNFNASEDQ 1820
+ + + +H FT+TS+ LS IK+QG W+ KL + +S DQ
Sbjct: 356 SIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHML------SSSDQ 409
Query: 1821 PK---IRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKK 1877
+ +EGP+G + D+ + E VMV GG G+TP+ SI+ DL++ +ST +CK
Sbjct: 410 IDRLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTE-----TCKI 464
Query: 1878 VYFLWIC 1884
IC
Sbjct: 465 PKITLIC 471
>gnl|CDD|219702 pfam08022, FAD_binding_8, FAD-binding domain.
Length = 103
Score = 75.8 bits (187), Expect = 3e-16
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 1741 LLPSDVIKIRFYRPPN-FTYHSGQWVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKAQG 1799
LLP +V+++ +P F Y GQ++ + H FT+TSAP ++ LS HIKA+G
Sbjct: 11 LLPDNVVELIVSKPKKPFKYKPGQYIFINFPPISFLQSHPFTITSAPEDDKLSVHIKAKG 70
Query: 1800 PWTWKLRNYFDPCNFNASEDQPKIRLEGPFGG 1831
WT KL Y + ++D+P++ +EGP+G
Sbjct: 71 GWTKKLAKYLSS-SPENNKDKPRVLIEGPYGP 101
>gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P)
binding protein, was intially identified as a chloroplast
reductase activity, catalyzing the electron transfer from
reduced iron-sulfur protein ferredoxin to NADP+ as the
final step in the electron transport mechanism of
photosystem I. FNR transfers electrons from reduced
ferredoxin to FAD (forming FADH2 via a semiquinone
intermediate) and then transfers a hydride ion to convert
NADP+ to NADPH. FNR has since been shown to utilize a
variety of electron acceptors and donors and has a
variety of physiological functions including nitrogen
assimilation, dinitrogen fixation, steroid hydroxylation,
fatty acid metabolism, oxygenase activity, and methane
assimilation in many organisms. FNR has an NAD(P)-binding
sub-domain of the alpha/beta class and a discrete
(usually N-terminal) flavin sub-domain which vary in
orientation with respect to the NAD(P) binding domain.
The N-terminal moeity may contain a flavin prosthetic
group (as in flavoenzymes) or use flavin as a substrate.
Because flavins such as FAD can exist in oxidized,
semiquinone (one- electron reduced), or fully reduced
hydroquinone forms, FNR can interact with one and 2
electron carriers. FNR has a strong preference for
NADP(H) vs NAD(H).
Length = 223
Score = 74.8 bits (184), Expect = 1e-14
Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 23/184 (12%)
Query: 1737 LETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHI 1795
+ TE + DV R P F++ GQ+V L ++++ S+P E L +
Sbjct: 1 VATEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTV 60
Query: 1796 KA--QGPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTP 1853
K GP++ L + ++ + GP G + V++ GGIG+TP
Sbjct: 61 KIVPGGPFSAWL--------HDLKPGD-EVEVSGPGGDFFLPLEESGPVVLIAGGIGITP 111
Query: 1854 YASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHI 1913
+ S+L L ++ L+ + F+D L ++ K+ + +
Sbjct: 112 FRSMLRHL-AADKPGG-------EITLLYGARTPADL-LFLDELEELAKEG--PNFRLVL 160
Query: 1914 FITQ 1917
+++
Sbjct: 161 ALSR 164
>gnl|CDD|216705 pfam01794, Ferric_reduct, Ferric reductase like transmembrane
component. This family includes a common region in the
transmembrane proteins mammalian cytochrome B-245 heavy
chain (gp91-phox), ferric reductase transmembrane
component in yeast and respiratory burst oxidase from
mouse-ear cress. This may be a family of flavocytochromes
capable of moving electrons across the plasma membrane.
The Frp1 protein from S. pombe is a ferric reductase
component and is required for cell surface ferric
reductase activity, mutants in frp1 are deficient in
ferric iron uptake. Cytochrome B-245 heavy chain is a
FAD-dependent dehydrogenase it is also has electron
transferase activity which reduces molecular oxygen to
superoxide anion, a precursor in the production of
microbicidal oxidants. Mutations in the sequence of
cytochrome B-245 heavy chain (gp91-phox) lead to the
X-linked chronic granulomatous disease. The bacteriocidal
ability of phagocytic cells is reduced and is
characterized by the absence of a functional plasma
membrane associated NADPH oxidase. The chronic
granulomatous disease gene codes for the beta chain of
cytochrome B-245 and cytochrome B-245 is missing from
patients with the disease.
Length = 122
Score = 65.8 bits (161), Expect = 2e-12
Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 21/115 (18%)
Query: 1582 IPLDSHIQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGI 1641
+ LD + FH+ A +L+H + +++ + + + +P I
Sbjct: 28 LSLDRLLLFHRWLGRLAFLLALLHVILYLVLWLRLG----------GILLLLEKLKRPYI 77
Query: 1642 TFWLFQTITGITGVLLFVIMVLIFVFAHPTIRKK-AYNWFWLAHSLYVFLFALML 1695
+ GV+ V+++L+ + + P +R++ Y F H L F L L
Sbjct: 78 ----------LLGVIALVLLLLLAITSLPPLRRRLGYELFLYLHILLAVAFLLAL 122
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 59.1 bits (144), Expect = 8e-11
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 72 VRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEM 131
+R F + DKDGDG IS E + G +E+++ + D D +G ID E E+
Sbjct: 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61
Query: 132 LR 133
+
Sbjct: 62 MA 63
Score = 59.1 bits (144), Expect = 8e-11
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 1215 VRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEM 1274
+R F + DKDGDG IS E + G +E+++ + D D +G ID E E+
Sbjct: 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61
Query: 1275 LR 1276
+
Sbjct: 62 MA 63
Score = 59.1 bits (144), Expect = 8e-11
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 1374 VRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEM 1433
+R F + DKDGDG IS E + G +E+++ + D D +G ID E E+
Sbjct: 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61
Query: 1434 LR 1435
+
Sbjct: 62 MA 63
Score = 43.7 bits (104), Expect = 2e-05
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 53 SLSRAEFASAL---GMKSDAVFVRMMFNIVDKDGDGRISFQEFLD 94
++S E +AL G + M VDKDGDG+I F+EFL+
Sbjct: 16 TISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Score = 43.7 bits (104), Expect = 2e-05
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 1196 SLSRAEFASAL---GMKSDAVFVRMMFNIVDKDGDGRISFQEFLD 1237
++S E +AL G + M VDKDGDG+I F+EFL+
Sbjct: 16 TISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Score = 43.7 bits (104), Expect = 2e-05
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 1355 SLSRAEFASAL---GMKSDAVFVRMMFNIVDKDGDGRISFQEFLD 1396
++S E +AL G + M VDKDGDG+I F+EFL+
Sbjct: 16 TISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Score = 39.8 bits (94), Expect = 5e-04
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 1409 KLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKD 1468
+LR F + D D +G I EL L+SL E E ID M ++ D
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGE---------GLSEEEIDEMIREVDKDGDG 51
Query: 1469 FLTYQDFKLMMR 1480
+ +++F +M
Sbjct: 52 KIDFEEFLELMA 63
Score = 35.6 bits (83), Expect = 0.013
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 1250 KLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGM 1299
+LR F + D D +G I EL L+SL E L++ ++ E+I +
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGE-----GLSEEEIDEMIREV 45
Score = 34.4 bits (80), Expect = 0.044
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 107 KLRIIFDMCDNDRNGVIDKGELAEMLRSLVE 137
+LR F + D D +G I EL L+SL E
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGE 31
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 66.2 bits (162), Expect = 1e-10
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 481 PRQQINRVSSWIDGSFIYSTSEAWLNAMRSF-TNGSLATDASGKMPVKNTMRVPLFNNPV 539
P IN + W DGS IY ++E +R+F +G L DA G +PV + +
Sbjct: 83 PPTYINTNTHWWDGSQIYGSTEEAQKRLRTFPPDGKLKLDADGLLPVD-------EHTGL 135
Query: 540 PHSLRTLSPERLYLLGDARSNQNPALLAFSILFFRWHNVIAAQIEDKHPELSDEEIFQKT 599
P + G N L LF R HN I + ++P+ SDE++F K
Sbjct: 136 PLT------------GFND-NWWVGLSLLHTLFVREHNAICDALRKEYPDWSDEQLFDKA 182
Query: 600 RRLVVASLQNVIAYEYIPAFLG 621
R + A + + E+ PA L
Sbjct: 183 RLVNAALMAKIHTVEWTPAILA 204
Score = 61.9 bits (151), Expect = 2e-09
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 800 DLGALNIMRGRDNGIADYNTVRSNYNLKKLKSWNDLEAVNPALFKEAHGKEILKRLKRSY 859
DL A++I+R R+ G+ YN R +L KS+ DL +E+ L+ Y
Sbjct: 341 DLAAIDILRDRERGVPRYNEFRRLLHLPPAKSFEDL--------TGD--EEVAAELREVY 390
Query: 860 GNSLDNIDLYIGGMLES-HEGPG---PLFTNIILEQFTRLRDADRFWFENTENGMFTAAE 915
G ++ +DL +G + E G G F IL RL+ +DRF+ + ++T
Sbjct: 391 GGDVEKVDLLVGLLAEPLPPGFGFSDTAFRIFILMASRRLK-SDRFFTNDFRPEVYTPEG 449
Query: 916 VEAIRKITLWDII 928
++ + T+ ++
Sbjct: 450 MDWVNNNTMKSVL 462
>gnl|CDD|188651 cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 465
Score = 63.5 bits (155), Expect = 6e-10
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 547 SPERLYLLGDARSNQNPALLAFSILFFRWHNVIAAQIEDKHPELSDEEIFQKTRRLVVAS 606
+ + L+GD R+++N + + F R+HN + + +E+F++ RRLV
Sbjct: 139 NGQGTALIGDPRNDENLIVAQLHLAFLRFHNAVVDALRAHGTP--GDELFEEARRLVRWH 196
Query: 607 LQNVIAYEYIPAFLGRSL---------SPYRGYKMDVHPGISHVFQTAAFRFGHSLIPPG 657
Q ++ +++P + YR ++ P + F AA+RFGHS++
Sbjct: 197 YQWLVLNDFLPRICDPDVVDDVLANGRRFYRFFREGK-PFMPVEFSVAAYRFGHSMVRAS 255
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 59.0 bits (143), Expect = 8e-10
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 24/158 (15%)
Query: 1325 FREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKD 1384
F+EA++L F K G+ E G VMR +LG ++ M N VD D
Sbjct: 13 FKEAFSL-FD-KDGDGTITTKELG-TVMR----------SLGQNPTEAELQDMINEVDAD 59
Query: 1385 GDGRISFQEFLDTVVLFSR-GHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMART 1443
G+G I F EFL + + +E++++ F + D D NG I EL ++ +L E
Sbjct: 60 GNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE---- 115
Query: 1444 TSLTDSQVTELIDGMFQDAGLDSKDFLTYQDF-KLMMR 1480
LTD +V E+I ++A +D + Y++F K+MM
Sbjct: 116 -KLTDEEVDEMI----READVDGDGQINYEEFVKMMMS 148
Score = 50.9 bits (122), Expect = 4e-07
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 1166 FREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKD 1225
F+EA++L F K G+ E G VMR +LG ++ M N VD D
Sbjct: 13 FKEAFSL-FD-KDGDGTITTKELG-TVMR----------SLGQNPTEAELQDMINEVDAD 59
Query: 1226 GDGRISFQEFLDTVVLFSR-GHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMART 1284
G+G I F EFL + + +E++++ F + D D NG I EL ++ +L E
Sbjct: 60 GNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE---- 115
Query: 1285 TSLTDSQVTELI 1296
LTD +V E+I
Sbjct: 116 -KLTDEEVDEMI 126
Score = 46.7 bits (111), Expect = 1e-05
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 23/135 (17%)
Query: 4 EQLDRRQLRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFASAL 63
+QL Q+ E F+EA++L F K G+ E G VMR +L
Sbjct: 3 DQLTEEQIAE---------FKEAFSL-FD-KDGDGTITTKELG-TVMR----------SL 40
Query: 64 GMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSR-GHTEDKLRIIFDMCDNDRNGV 122
G ++ M N VD DG+G I F EFL + + +E++++ F + D D NG
Sbjct: 41 GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGF 100
Query: 123 IDKGELAEMLRSLVE 137
I EL ++ +L E
Sbjct: 101 ISAAELRHVMTNLGE 115
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 62.7 bits (153), Expect = 1e-09
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 16/173 (9%)
Query: 476 TSPNSPRQQINRVSSWIDGSFIYSTSEAWLNAMRSFTNGSLAT-DASGKM-------PVK 527
T P PR+ N + ID S IY +EA +A+R F +G L + +G+
Sbjct: 117 TDPGDPRR--NTSNHGIDLSQIYGLTEARTHALRLFKDGKLKSQMINGEEYPPYLFEDGG 174
Query: 528 NTMRVPLFNNPVPHSLRTLSPERLYLLGDARSNQNPALLAFSILFFRWHNVIAAQIEDKH 587
M P P+ L +L+ +G R N P L + ++ R HN + ++ +H
Sbjct: 175 VKMEFPPLVPPLGDELTPEREAKLFAVGHERFNLTPGLFMLNTIWLREHNRVCDILKKEH 234
Query: 588 PELSDEEIFQKTRRLVVASLQNVIAYEYIPAFLGRSLSPYRGYKMDVHPGISH 640
P+ DE +FQ R +++ L ++ +YI LSPY +K+ P ++
Sbjct: 235 PDWDDERLFQTARNILIGELIKIVIEDYI-----NHLSPYH-FKLFFDPELAF 281
Score = 36.1 bits (84), Expect = 0.22
Identities = 33/150 (22%), Positives = 49/150 (32%), Gaps = 42/150 (28%)
Query: 806 IMRGRDNGIADYNTVRSNYNLKKLKSWNDLEAVNPALFKEAHG-KEILKRLKRSYGNSLD 864
I +GR +A +N R + L S F+E G E+ L+ YG+ +D
Sbjct: 365 IEQGRKLRLASFNDYRKRFGLPPYTS-----------FEELTGDPEVAAELEELYGD-VD 412
Query: 865 NIDLYIGGMLESHEGPGPL----------------FTNIILEQFTRLRDADRFWFENTEN 908
++ Y+G E PL TN +L W +T
Sbjct: 413 AVEFYVGLFAEDPRPNSPLPPLMVEMVAPDAFSGALTNPLLSP--------EVWKPST-- 462
Query: 909 GMFTAAEVEAIRKI-TLWDIIVNATDIGAD 937
F I K TL D++ G
Sbjct: 463 --FGGEGGFDIVKTATLQDLVCRNVKGGCP 490
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function prediction
only].
Length = 160
Score = 58.1 bits (141), Expect = 2e-09
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 14/135 (10%)
Query: 1353 RTSLSRAEFAS---ALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTV-VLFSRGHTED 1408
+ R E +LG + +F +D + + F EFL + V RG E+
Sbjct: 34 DGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNET-VDFPEFLTVMSVKLKRGDKEE 92
Query: 1409 KLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKD 1468
+LR F + D D +G I GEL +L SL + E ++ + ++ D
Sbjct: 93 ELREAFKLFDKDHDGYISIGELRRVL---------KSLGERLSDEEVEKLLKEYDEDGDG 143
Query: 1469 FLTYQDFKLMMRDYK 1483
+ Y++FK +++D
Sbjct: 144 EIDYEEFKKLIKDSP 158
Score = 50.0 bits (120), Expect = 1e-06
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 1194 RTSLSRAEFAS---ALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTV-VLFSRGHTED 1249
+ R E +LG + +F +D + + F EFL + V RG E+
Sbjct: 34 DGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNET-VDFPEFLTVMSVKLKRGDKEE 92
Query: 1250 KLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGM 1299
+LR F + D D +G I GEL +L+SL E L+D +V +L+
Sbjct: 93 ELREAFKLFDKDHDGYISIGELRRVLKSLGE-----RLSDEEVEKLLKEY 137
Score = 47.7 bits (114), Expect = 7e-06
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 30/138 (21%)
Query: 2 QSEQLDRRQLRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEFAS 61
QL Q++E +EA+ L D + R E
Sbjct: 10 TFTQLTEEQIQE---------LKEAFQL------------FDRDS----DGLIDRNELGK 44
Query: 62 ---ALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTV-VLFSRGHTEDKLRIIFDMCDN 117
+LG + +F +D + + F EFL + V RG E++LR F + D
Sbjct: 45 ILRSLGFNPSEAEINKLFEEIDAGNET-VDFPEFLTVMSVKLKRGDKEEELREAFKLFDK 103
Query: 118 DRNGVIDKGELAEMLRSL 135
D +G I GEL +L+SL
Sbjct: 104 DHDGYISIGELRRVLKSL 121
Score = 37.3 bits (87), Expect = 0.024
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 75 MFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEM 131
F + DKD DG IS E + +++++ + D D +G ID E ++
Sbjct: 97 AFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKL 153
Score = 37.3 bits (87), Expect = 0.024
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 1218 MFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEM 1274
F + DKD DG IS E + +++++ + D D +G ID E ++
Sbjct: 97 AFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKL 153
Score = 33.1 bits (76), Expect = 0.61
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 42 DDETGEV---VMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEF 92
D G + +R L +LG + V + D+DGDG I ++EF
Sbjct: 103 KDHDGYISIGELRRVLK------SLGERLSDEEVEKLLKEYDEDGDGEIDYEEF 150
Score = 33.1 bits (76), Expect = 0.61
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 1185 DDETGEV---VMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEF 1235
D G + +R L +LG + V + D+DGDG I ++EF
Sbjct: 103 KDHDGYISIGELRRVLK------SLGERLSDEEVEKLLKEYDEDGDGEIDYEEF 150
Score = 30.0 bits (68), Expect = 6.7
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 10/72 (13%)
Query: 1408 DKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSK 1467
+L+ F + D D +G+ID+ EL ++LRSL + +++++ +L + + DAG
Sbjct: 20 QELKEAFQLFDRDSDGLIDRNELGKILRSL-----GFNPSEAEINKLFEEI--DAG---N 69
Query: 1468 DFLTYQDFKLMM 1479
+ + + +F +M
Sbjct: 70 ETVDFPEFLTVM 81
>gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport
and metabolism].
Length = 438
Score = 61.0 bits (148), Expect = 3e-09
Identities = 66/297 (22%), Positives = 114/297 (38%), Gaps = 50/297 (16%)
Query: 1584 LDSHIQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHL---HCLTAEVHFPSDYKPG 1640
LD +FHK + A+ L H I + ++ Q L + + S + G
Sbjct: 72 LDKIYRFHKYTSILAILLLLAHNFILFIGNW-LTLQLLNFKPAPVKPSLAGMWRSAKELG 130
Query: 1641 IT-FWLFQTITGITGVLLFV----------IMVLIFVFA--HPTIRKKAYNWFWLAHSLY 1687
++F + + + L + +M ++++ H W A S
Sbjct: 131 EWSAYIFIGLLLVWRLWLNIGYENWRIAHRLMAVVYILGLLHSYGLLNYLYLSWPAVSWL 190
Query: 1688 VFLFALMLIHGLARITGPPRFWIYFIGPGVVF-ILDKVVSLRTKYMALDILETELLPSDV 1746
V FAL+ GL + F G F L KV + + +D LE
Sbjct: 191 VIAFALL---GLLAA-----IYSIFGYFGRSFPYLGKVTAP--QRGNVDTLE-------- 232
Query: 1747 IKIRFYRPPNFTYHSGQ--WVRLACTAFKNAAYHSFTLTSAPHENFLSCHIKAQGPWTWK 1804
I I P + Y +GQ ++++ F+ H FT+ + + L IKA G +T
Sbjct: 233 ITIGLQGP--WLYQAGQFAFLKIEIEEFRMRP-HPFTIACSHEGSELRFSIKALGDFTKT 289
Query: 1805 LRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDL 1861
L++ K+ ++GP+G + + V + GGIG+TP+ S+L L
Sbjct: 290 LKDNLKVGT--------KLEVDGPYGKFDFERGL-NTQVWIAGGIGITPFISMLFTL 337
>gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin
reductase-like proteins catalyze electron transfer
between an NAD(P)-binding sub-domain of the alpha/beta
class and a discrete (usually N-terminal) domain, which
varies in orientation with respect to the NAD(P) binding
domain. The N-terminal domain may contain a flavin
prosthetic group (as in flavoenzymes) or use flavin as a
substrate. Ferredoxin is reduced in the final stage of
photosystem I. The flavoprotein Ferredoxin-NADP+
reductase transfers electrons from reduced ferredoxin to
FAD (forming FADH2 via a semiquinone intermediate) which
then transfers a hydride ion to convert NADP+ to NADPH.
Length = 216
Score = 51.9 bits (125), Expect = 6e-07
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 1739 TELLPSDVIKIRFYRPPNFTYHSGQ--WVRLACTAFKNAAYHSFTLTSAPHENF-LSCHI 1795
TE+ P+ + + R P + +GQ ++R + H FT++SAP + L I
Sbjct: 4 TEVRPTTTLTLE-PRGPALGHRAGQFAFLRFD-ASGWEEP-HPFTISSAPDPDGRLRFTI 60
Query: 1796 KAQGPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYA 1855
KA G +T +L ++ +EGP+G D + + + GGIG+TP+
Sbjct: 61 KALGDYTRRLAE-------RLKPGT-RVTVEGPYGRFTFDDRRARQ-IWIAGGIGITPFL 111
Query: 1856 SILNDLVFGTSTNR 1869
++L L
Sbjct: 112 ALLEALAARGDARP 125
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 48.9 bits (117), Expect = 3e-06
Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 12/119 (10%)
Query: 1364 ALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLD--TVVLFSRGHTEDKLRIIFDMCDNDR 1421
+LG + ++ M VDKDG G+I F+EFLD T L R E+ L+ F + D+D+
Sbjct: 45 SLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK-AFRLFDDDK 103
Query: 1422 NGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQDFKLMMR 1480
G I L + + L E ++TD ++ E+ID +A + ++ ++F +M+
Sbjct: 104 TGKISLKNLKRVAKELGE-----TITDEELQEMID----EADRNGDGEISEEEFYRIMK 153
Score = 47.8 bits (114), Expect = 6e-06
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 1205 ALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLD--TVVLFSRGHTEDKLRIIFDMCDNDR 1262
+LG + ++ M VDKDG G+I F+EFLD T L R E+ L+ F + D+D+
Sbjct: 45 SLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK-AFRLFDDDK 103
Query: 1263 NGVIDKGELAEMLRSLVEMARTTSLTDSQVTELID 1297
G I L + + L E ++TD ++ E+ID
Sbjct: 104 TGKISLKNLKRVAKELGE-----TITDEELQEMID 133
Score = 43.5 bits (103), Expect = 2e-04
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 1248 EDKLRIIFDMCDNDRNGVIDKGELAEMLRSL------VEMARTTSLTDSQVTELIDGMFQ 1301
+ ++R FD+ D D +G ID EL +RSL E+ + + D + ID F+
Sbjct: 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKID--FE 73
Query: 1302 SPRELMLAKAETRERRQKKLEHFFREAYALTFGLKPGEKRRRDDETGEVVMRTSLSRAEF 1361
++M K R+ R++ L+ F + DD+TG++ + +L R
Sbjct: 74 EFLDIMTKKLGERDPREEILKAF---------------RLFDDDKTGKISL-KNLKRV-- 115
Query: 1362 ASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFL 1395
A LG ++ M + D++GDG IS +EF
Sbjct: 116 AKELGETITDEELQEMIDEADRNGDGEISEEEFY 149
Score = 42.0 bits (99), Expect = 6e-04
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 62 ALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLD--TVVLFSRGHTEDKLRIIFDMCDNDR 119
+LG + ++ M VDKDG G+I F+EFLD T L R E+ L+ F + D+D+
Sbjct: 45 SLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK-AFRLFDDDK 103
Query: 120 NGVI 123
G I
Sbjct: 104 TGKI 107
Score = 32.0 bits (73), Expect = 1.6
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 42 DDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFL 93
DD+TG++ + +L R A LG ++ M + D++GDG IS +EF
Sbjct: 101 DDKTGKISL-KNLKRV--AKELGETITDEELQEMIDEADRNGDGEISEEEFY 149
Score = 32.0 bits (73), Expect = 1.6
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 1185 DDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFL 1236
DD+TG++ + +L R A LG ++ M + D++GDG IS +EF
Sbjct: 101 DDKTGKISL-KNLKRV--AKELGETITDEELQEMIDEADRNGDGEISEEEFY 149
Score = 31.6 bits (72), Expect = 2.4
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 75 MFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLR 133
F + D D G+IS + T+++L+ + D D + +G I + E +++
Sbjct: 95 AFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153
Score = 31.6 bits (72), Expect = 2.4
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 1218 MFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLR 1276
F + D D G+IS + T+++L+ + D D + +G I + E +++
Sbjct: 95 AFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 50.1 bits (120), Expect = 1e-05
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 440 EMHEIEIEKCDEMYDKDCEGGKYIPFHRAGYDRSTGTSPNSPRQQINRVSSWIDGSFIYS 499
+ +IE+ E+ + C K F++ TG SP+ +N + W DGS IY
Sbjct: 166 DTQQIELTAPKEVASQ-CPL-KSFKFYKTKEV-PTG-SPDIKTGSLNIRTPWWDGSVIYG 221
Query: 500 TSEAWLNAMRSFTNGSLATDASGKMPVKNTMRVPLFNNPVPHSLRTLSPERLYLLGDARS 559
++E L +R+F +G L G + +P S GD R
Sbjct: 222 SNEKGLRRVRTFKDGKLKISEDGLLLHDEDG--------IPIS------------GDVR- 260
Query: 560 NQNPALLAFSILFFRWHNVIAAQIEDKHPELSDEEIFQKTRRLVVASLQNVIA 612
N + LF + HN + +++++P+ DEE+++ RLV ++ VIA
Sbjct: 261 NSWAGVSLLQALFVKEHNAVCDALKEEYPDFDDEELYR-HARLVTSA---VIA 309
Score = 49.0 bits (117), Expect = 2e-05
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Query: 800 DLGALNIMRGRDNGIADYNTVRSNYNLKKLKSWNDLEAVNPALFKEAHGKEILKRLKRSY 859
D+ AL I R R+ G+A YN R N + + W DL +E ++ L+ Y
Sbjct: 472 DMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDL----------TDDEEAIEVLREVY 521
Query: 860 GNSLDNIDLYIGGMLESHEGPGPLFT----NIILEQFTRLRDADRFWFENTENGMFTAAE 915
G+ ++ +DL +G M E + G + I L +R +ADRF+ N +T
Sbjct: 522 GDDVEKLDLLVGLMAEK-KIKGFAISETAFFIFLLMASRRLEADRFFTSNFNEKTYTKKG 580
Query: 916 VEAIRKI-TLWDII 928
+E + +L D+I
Sbjct: 581 LEWVNTTESLKDVI 594
>gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase;
Validated.
Length = 339
Score = 49.1 bits (118), Expect = 1e-05
Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 30/149 (20%)
Query: 1727 LRTKYMALDILETELLPSDVIKIRFYRPPN--FTYHSGQWVRLACTAFKNAAYHSFTLTS 1784
+ K + + E + DV++++ P Y +GQ++ K+ S+++ +
Sbjct: 98 IPVKKLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFI---LKDGKRRSYSIAN 154
Query: 1785 APH-ENFLSCHIK--AQGPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEV 1841
APH L HI+ G +T + F A +++ +R+EGP G F +
Sbjct: 155 APHSGGPLELHIRHMPGGVFTDHV--------FGALKERDILRIEGPLG-------TFFL 199
Query: 1842 A-------VMVGGGIGVTPYASILNDLVF 1863
V++ G G P SI+ L
Sbjct: 200 REDSDKPIVLLASGTGFAPIKSIVEHLRA 228
>gnl|CDD|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin
oxidoreductases use flavin as a substrate in mediating
electron transfer from iron complexes or iron proteins.
Structurally similar to ferredoxin reductases, but with
only 15% sequence identity, flavin reductases reduce FAD,
FMN, or riboflavin via NAD(P)H. Flavin is used as a
substrate, rather than a tightly bound prosthetic group
as in flavoenzymes; weaker binding is due to the absence
of a binding site for the AMP moeity of FAD.
Length = 224
Score = 47.2 bits (113), Expect = 3e-05
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 28/157 (17%)
Query: 1740 ELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHEN-FLSCHIKAQ 1798
E L DV ++R P + +GQ++ L + F++ SAPHE+ + HI+A
Sbjct: 7 EPLNDDVYRVRLKPPAPLDFLAGQYLDL---LLDDGDKRPFSIASAPHEDGEIELHIRAV 63
Query: 1799 --GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEV---AVMVGGGIGVTP 1853
G ++ + F ++ +R+EGP G + + + +++ GG G P
Sbjct: 64 PGGSFSDYV--------FEELKENGLVRIEGPLG---DFFLREDSDRPLILIAGGTGFAP 112
Query: 1854 YASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHF 1890
SIL L+ + S + ++ W + +
Sbjct: 113 IKSILEHLL--------AQGSKRPIHLYWGARTEEDL 141
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 43.1 bits (102), Expect = 3e-05
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 1415 DMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQDAGLDSKDFLTYQD 1474
+ D D +G ID EL ++L++L LTD +V ELI+ F + D +++++
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLK-----LTDEEVEELIEADFNEIDKDGDGRISFEE 55
Query: 1475 FKLMM 1479
F M
Sbjct: 56 FLEAM 60
Score = 38.5 bits (90), Expect = 0.001
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 80 DKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMC----DNDRNGVIDKGELAEML 132
DKDGDG I +E + T++++ + + D D +G I E E +
Sbjct: 4 DKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 38.5 bits (90), Expect = 0.001
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 1223 DKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMC----DNDRNGVIDKGELAEML 1275
DKDGDG I +E + T++++ + + D D +G I E E +
Sbjct: 4 DKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 38.5 bits (90), Expect = 0.001
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 1382 DKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMC----DNDRNGVIDKGELAEML 1434
DKDGDG I +E + T++++ + + D D +G I E E +
Sbjct: 4 DKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 36.6 bits (85), Expect = 0.006
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 53 SLSRAEFASAL-----GMKSDAV--FVRMMFNIVDKDGDGRISFQEFLD 94
+ E L + + V + FN +DKDGDGRISF+EFL+
Sbjct: 10 YIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLE 58
Score = 36.6 bits (85), Expect = 0.006
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 1196 SLSRAEFASAL-----GMKSDAV--FVRMMFNIVDKDGDGRISFQEFLD 1237
+ E L + + V + FN +DKDGDGRISF+EFL+
Sbjct: 10 YIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLE 58
Score = 36.6 bits (85), Expect = 0.006
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 1355 SLSRAEFASAL-----GMKSDAV--FVRMMFNIVDKDGDGRISFQEFLD 1396
+ E L + + V + FN +DKDGDGRISF+EFL+
Sbjct: 10 YIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLE 58
Score = 31.2 bits (71), Expect = 0.56
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 1256 DMCDNDRNGVIDKGELAEMLRSLVEMARTTSLTDSQVTELIDGMFQ 1301
+ D D +G ID EL ++L++L LTD +V ELI+ F
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLK-----LTDEEVEELIEADFN 41
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 40.8 bits (97), Expect = 1e-04
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 72 VRMMFNIVDKDGDGRISFQEFLD 94
++ F + DKDGDG+I F+EF D
Sbjct: 2 LKEAFRLFDKDGDGKIDFEEFKD 24
Score = 40.8 bits (97), Expect = 1e-04
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 1215 VRMMFNIVDKDGDGRISFQEFLD 1237
++ F + DKDGDG+I F+EF D
Sbjct: 2 LKEAFRLFDKDGDGKIDFEEFKD 24
Score = 40.8 bits (97), Expect = 1e-04
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 1374 VRMMFNIVDKDGDGRISFQEFLD 1396
++ F + DKDGDG+I F+EF D
Sbjct: 2 LKEAFRLFDKDGDGKIDFEEFKD 24
Score = 32.7 bits (76), Expect = 0.065
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 111 IFDMCDNDRNGVIDKGELAEMLRSL 135
F + D D +G ID E ++L++L
Sbjct: 5 AFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 32.7 bits (76), Expect = 0.065
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 1254 IFDMCDNDRNGVIDKGELAEMLRSL 1278
F + D D +G ID E ++L++L
Sbjct: 5 AFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 32.7 bits (76), Expect = 0.065
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 1413 IFDMCDNDRNGVIDKGELAEMLRSL 1437
F + D D +G ID E ++L++L
Sbjct: 5 AFRLFDKDGDGKIDFEEFKDLLKAL 29
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 46.4 bits (110), Expect = 2e-04
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 65 MKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVID 124
++++ F R + IVD D DG++SF EF D + F +K +F D + +GV+
Sbjct: 174 VETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVT 233
Query: 125 KGELAEML 132
ELA +L
Sbjct: 234 IDELAALL 241
Score = 46.4 bits (110), Expect = 2e-04
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 1208 MKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVID 1267
++++ F R + IVD D DG++SF EF D + F +K +F D + +GV+
Sbjct: 174 VETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVT 233
Query: 1268 KGELAEML 1275
ELA +L
Sbjct: 234 IDELAALL 241
Score = 46.4 bits (110), Expect = 2e-04
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 1367 MKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVID 1426
++++ F R + IVD D DG++SF EF D + F +K +F D + +GV+
Sbjct: 174 VETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVT 233
Query: 1427 KGELAEML 1434
ELA +L
Sbjct: 234 IDELAALL 241
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 40.6 bits (96), Expect = 2e-04
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 83 GDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 135
G I+ +E + L +E+++ I+F D D +G I E +L+ L
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFCVLLQRL 53
Score = 40.6 bits (96), Expect = 2e-04
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 1226 GDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1278
G I+ +E + L +E+++ I+F D D +G I E +L+ L
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFCVLLQRL 53
Score = 40.6 bits (96), Expect = 2e-04
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 1385 GDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSL 1437
G I+ +E + L +E+++ I+F D D +G I E +L+ L
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFCVLLQRL 53
Score = 34.0 bits (79), Expect = 0.045
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 72 VRMMFNIVDKDGDGRISFQEFLD 94
V ++F D DGDG+ISF+EF
Sbjct: 26 VDILFREFDTDGDGKISFEEFCV 48
Score = 34.0 bits (79), Expect = 0.045
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1215 VRMMFNIVDKDGDGRISFQEFLD 1237
V ++F D DGDG+ISF+EF
Sbjct: 26 VDILFREFDTDGDGKISFEEFCV 48
Score = 34.0 bits (79), Expect = 0.045
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1374 VRMMFNIVDKDGDGRISFQEFLD 1396
V ++F D DGDG+ISF+EF
Sbjct: 26 VDILFREFDTDGDGKISFEEFCV 48
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not
undergo calcium dependent conformational changes.
Length = 29
Score = 39.4 bits (93), Expect = 3e-04
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 72 VRMMFNIVDKDGDGRISFQEFLD 94
++ F DKDGDG+ISF+EF +
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFKE 24
Score = 39.4 bits (93), Expect = 3e-04
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 1215 VRMMFNIVDKDGDGRISFQEFLD 1237
++ F DKDGDG+ISF+EF +
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFKE 24
Score = 39.4 bits (93), Expect = 3e-04
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 1374 VRMMFNIVDKDGDGRISFQEFLD 1396
++ F DKDGDG+ISF+EF +
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFKE 24
Score = 33.6 bits (78), Expect = 0.032
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 107 KLRIIFDMCDNDRNGVIDKGELAEMLRSL 135
+L+ F D D +G I E E+L+ L
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 33.6 bits (78), Expect = 0.032
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1250 KLRIIFDMCDNDRNGVIDKGELAEMLRSL 1278
+L+ F D D +G I E E+L+ L
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 33.6 bits (78), Expect = 0.032
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1409 KLRIIFDMCDNDRNGVIDKGELAEMLRSL 1437
+L+ F D D +G I E E+L+ L
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 44.3 bits (105), Expect = 6e-04
Identities = 48/210 (22%), Positives = 83/210 (39%), Gaps = 67/210 (31%)
Query: 485 INRVSSWIDGSFIYSTSEAWLNAMRSFTNGSLATDASGKMPVKNTMRVPLFNNPVPHSLR 544
IN SS++D S +Y +++ N +R+ +G L D
Sbjct: 117 INNTSSYLDLSPLYGSNQEEQNKVRTMKDGKLKPD------------------------- 151
Query: 545 TLSPERLYLLGDARSNQNPALLAFSILFFRWHNVIAAQI-----------------EDKH 587
T S +R LLG Q P + A ++F R+HN + Q+
Sbjct: 152 TFSDKR--LLG-----QPPGVCALLVMFNRFHNYVVEQLAQINEGGRFTPPGDKLDSSAK 204
Query: 588 PELSDEEIFQKTRRLVVASLQNVIAYEYIPAFLG--RSLSPYR-GYKMDVHPGISHVFQ- 643
E DE++FQ R + N++ ++Y+ A L R+ S + ++++ ++ V +
Sbjct: 205 EEKLDEDLFQTARLITCGLYINIVLHDYVRAILNLNRTDSTWTLDPRVEIGRSLTGVPRG 264
Query: 644 -----TAAF----RFGHSLIPPGIYRRDEK 664
+ F R+ HS I RDEK
Sbjct: 265 TGNQVSVEFNLLYRW-HS----AISARDEK 289
Score = 41.9 bits (99), Expect = 0.004
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
Query: 791 FGPNEFSR--RDLGALNIMRGRDNGIADYNTVRSNYNLKKLKSWNDLEAVNPALFKEAHG 848
FG + + L I++ R+ +A N R + LK + E +N
Sbjct: 363 FGARNVPASLKVIEILGILQAREWNVATLNEFRKFFGLKP---YETFEDINSD------- 412
Query: 849 KEILKRLKRSYGNSLDNIDLYIGGMLESHEGPGP 882
E+ + L+ YG DN++LY G + E + P P
Sbjct: 413 PEVAEALELLYG-HPDNVELYPGLVAEDAKPPMP 445
>gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin
oxidoreductases [Coenzyme metabolism / Energy production
and conversion].
Length = 252
Score = 42.4 bits (100), Expect = 0.001
Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 24/151 (15%)
Query: 1736 ILETELLPSDVIKIRF-YRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHEN-FLSC 1793
++E E + D +R T+ GQ+V L ++L SAP + L
Sbjct: 12 VVEKEEISPDTFLLRLRLPFVALTFKPGQFVML--RVPGGVRR-PYSLASAPDDKGELEL 68
Query: 1794 HIKAQ--GPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGV 1851
HI+ G T + D KIR+ GP G G + +++ GG G+
Sbjct: 69 HIRVYEVGKVTKYIFGL-------KEGD--KIRVRGPLGNGFLREKIGKPVLLIAGGTGI 119
Query: 1852 TPYASILNDLVFGTSTNRYSGVSCKKVYFLW 1882
P +I +L N KV L+
Sbjct: 120 APLYAIAKELKEKGDAN--------KVTLLY 142
>gnl|CDD|99793 cd06196, FNR_like_1, Ferredoxin reductase-like proteins catalyze
electron transfer between an NAD(P)-binding domain of the
alpha/beta class and a discrete (usually N-terminal)
domain which varies in orientation with respect to the
NAD(P) binding domain. The N-terminal region may contain
a flavin prosthetic group (as in flavoenzymes) or use
flavin as a substrate. Ferredoxin is reduced in the final
stage of photosystem I. The flavoprotein Ferredoxin-NADP+
reductase transfers electrons from reduced ferredoxin to
FAD (forming FADH2 via a semiquinone intermediate) which
then transfers a hydride ion to convert NADP+ to NADPH.
Length = 218
Score = 40.3 bits (95), Expect = 0.005
Identities = 63/281 (22%), Positives = 98/281 (34%), Gaps = 94/281 (33%)
Query: 1734 LDILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFK-NAAYHSFTLTSAPHENFLS 1792
+ +L E + DV ++RF +P + + GQ +A FT TS P ++ L
Sbjct: 3 VTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLE 62
Query: 1793 CHIKAQGPWTWKLRNYFDPCNFNASEDQPK----IRLEGPFGGGNQDWYKFEVAVMVGGG 1848
IK+ Y D + + + +E P+G YK V + GG
Sbjct: 63 FVIKS----------YPDHDGVTEQLGRLQPGDTLLIEDPWGAIE---YKGP-GVFIAGG 108
Query: 1849 IGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNV 1908
G+TP FI +LRD+ K
Sbjct: 109 AGITP---------------------------------------FIAILRDLAAKG---K 126
Query: 1909 LEIHIFITQFFHKFDLRTTMLYICENHFQRLSKSSMFTGLKAVN----------HFGRPD 1958
LE + I F +T I ++ +++ GLK +N GR D
Sbjct: 127 LEGNTLI------FANKTEKDIILKDELEKM------LGLKFINVVTDEKDPGYAHGRID 174
Query: 1959 MSSFLKFV---QKKHSYVSKIGVFSCGPRPLTKSIMSACEE 1996
+FLK +H YV CGP P+ ++I A +E
Sbjct: 175 -KAFLKQHVTDFNQHFYV-------CGPPPMEEAINGALKE 207
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated in
endocytosis, vesicle transport, and signal transduction.
The alignment contains a pair of EF-hand motifs,
typically one of them is canonical and binds to Ca2+,
while the other may not bind to Ca2+. A hydrophobic
binding pocket is formed by residues from both EF-hand
motifs. The EH domain binds to proteins containing NPF
(class I), [WF]W or SWG (class II), or H[TS]F (class
III) sequence motifs.
Length = 67
Score = 36.8 bits (86), Expect = 0.006
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 75 MFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 134
+F +D DGDG IS E L G L I+D+ D D++G +DK E A +
Sbjct: 4 IFRSLDPDGDGLISGDEARP--FLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMH- 60
Query: 135 LVEMART 141
L+ +A
Sbjct: 61 LIALALN 67
Score = 36.8 bits (86), Expect = 0.006
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 1218 MFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1277
+F +D DGDG IS E L G L I+D+ D D++G +DK E A +
Sbjct: 4 IFRSLDPDGDGLISGDEARP--FLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMH- 60
Query: 1278 LVEMART 1284
L+ +A
Sbjct: 61 LIALALN 67
Score = 36.8 bits (86), Expect = 0.006
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 1377 MFNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRS 1436
+F +D DGDG IS E L G L I+D+ D D++G +DK E A +
Sbjct: 4 IFRSLDPDGDGLISGDEARP--FLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMH- 60
Query: 1437 LVEMART 1443
L+ +A
Sbjct: 61 LIALALN 67
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 35.6 bits (83), Expect = 0.007
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 107 KLRIIFDMCDNDRNGVIDKGELAEMLRSL 135
+LR F + D D +G I EL + LRSL
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSL 29
Score = 35.6 bits (83), Expect = 0.007
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 1250 KLRIIFDMCDNDRNGVIDKGELAEMLRSL 1278
+LR F + D D +G I EL + LRSL
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSL 29
Score = 35.6 bits (83), Expect = 0.007
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 1409 KLRIIFDMCDNDRNGVIDKGELAEMLRSL 1437
+LR F + D D +G I EL + LRSL
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSL 29
Score = 31.4 bits (72), Expect = 0.19
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 72 VRMMFNIVDKDGDGRISFQEFLD 94
+R F + DKDGDG IS +E
Sbjct: 2 LREAFKLFDKDGDGYISAEELRK 24
Score = 31.4 bits (72), Expect = 0.19
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 1215 VRMMFNIVDKDGDGRISFQEFLD 1237
+R F + DKDGDG IS +E
Sbjct: 2 LREAFKLFDKDGDGYISAEELRK 24
Score = 31.4 bits (72), Expect = 0.19
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 1374 VRMMFNIVDKDGDGRISFQEFLD 1396
+R F + DKDGDG IS +E
Sbjct: 2 LREAFKLFDKDGDGYISAEELRK 24
>gnl|CDD|99809 cd06213, oxygenase_e_transfer_subunit, The oxygenase reductase
FAD/NADH binding domain acts as part of the
multi-component bacterial oxygenases which oxidize
hydrocarbons. Electron transfer is from NADH via FAD (in
the oxygenase reductase) and an [2FE-2S] ferredoxin
center (fused to the FAD/NADH domain and/or discrete) to
the oxygenase. Dioxygenases add both atoms of oxygen to
the substrate while mono-oxygenases add one atom to the
substrate and one atom to water. In dioxygenases, Class I
enzymes are 2 component, containing a reductase with
Rieske type [2Fe-2S] redox centers and an oxygenase.
Class II are 3 component, having discrete flavin and
ferredoxin proteins and an oxygenase. Class III have 2
[2Fe-2S] centers, one fused to the flavin domain and the
other separate.
Length = 227
Score = 39.2 bits (92), Expect = 0.013
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 39/158 (24%)
Query: 1728 RTKYMALDILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPH 1787
+ + DI+ + ++ RP + +GQ+ L A +SF +AP
Sbjct: 7 AQERLTHDIVR--------LTVQLDRPIAYK--AGQYAELTLPGLPAARSYSFA--NAPQ 54
Query: 1788 E-NFLSCHIK--AQGPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVA-- 1842
LS HI+ G ++ L F A ++ + GPFG W + A
Sbjct: 55 GDGQLSFHIRKVPGGAFSGWL--------FGADRTGERLTVRGPFG---DFWLRPGDAPI 103
Query: 1843 VMVGGGIGVTPYASILND-----------LVFGTSTNR 1869
+ + GG G+ P +IL L+FG T R
Sbjct: 104 LCIAGGSGLAPILAILEQARAAGTKRDVTLLFGARTQR 141
>gnl|CDD|220672 pfam10277, Frag1, Frag1/DRAM/Sfk1 family. This family includes
Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor
activating protein 1) is a protein that is conserved from
fungi to humans. There are four potential iso-prenylation
sites throughout the peptide, viz CILW, CIIW and CIGL.
Frag1 is a membrane-spanning protein that is ubiquitously
expressed in adult tissues suggesting an important
cellular function. Dram is a family of proteins conserved
from nematodes to humans with six hydrophobic
transmembrane regions and an Endoplasmic Reticulum signal
peptide. It is a lysosomal protein that induces
macro-autophagy as an effector of p53-mediated death,
where p53 is the tumour-suppressor gene that is
frequently mutated in cancer. Expression of Dram is
stress-induced. This region is also part of a family of
small plasma membrane proteins, referred to as Sfk1, that
may act together with or upstream of Stt4p to generate
normal levels of the essential phospholipid PI4P, thus
allowing proper localisation of Stt4p to the actin
cytoskeleton.
Length = 216
Score = 39.2 bits (92), Expect = 0.013
Identities = 19/165 (11%), Positives = 42/165 (25%), Gaps = 39/165 (23%)
Query: 1549 IFYVITIALFVERFIHYSFLAEHTDLRH-----IMG----------QYIPLDSHIQFHKI 1593
F + + R++ LA ++ + G H I
Sbjct: 65 AFLRLLLLF--LRYLRLRPLASRSERVLNILALVFGIIGALGLGGVANFQSTEDHDVHDI 122
Query: 1594 AACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGITFWLFQTITGIT 1653
A L++ + Y + P+ +F + I I
Sbjct: 123 GAILFFVGGLLYMLLQTALSYRLGPTPVLR-----------------KSFR-LKLILSII 164
Query: 1654 GVLLFVIMVLIFVFAHPTIRKKAYNWF----WLAHSLYVFLFALM 1694
+ + + F+ + AY+ W+ ++ F
Sbjct: 165 AFISAIPFGVFFIQHNVHCGPGAYSLSAIFEWILAFSFILFFGTF 209
>gnl|CDD|224920 COG2009, SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome
b subunit [Energy production and conversion].
Length = 132
Score = 36.9 bits (86), Expect = 0.027
Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 19/128 (14%)
Query: 1637 YKPGITFWLFQTITGITGVLLFVIMVLIFVFAHPTIRK-----KAYNWF------WLAHS 1685
Y+P IT + + I+GV+L + + + A + A+ ++ ++
Sbjct: 12 YRPPITMYAS-ILHRISGVILAFFLFVHILLASSWLAGSASFNAAFEFYHALLGSFIVKL 70
Query: 1686 LYVFLFALMLIHGLARITGPPRFWIYFIGPGVVFILDKVVSLRTK-YMALDILETELLPS 1744
+ + L +L HGL I G L V + T LL
Sbjct: 71 VLLGLVLALLYHGLNGI------RHLLWDFGYGLELKGVGYTGAALVFFSAVTLTLLLWV 124
Query: 1745 DVIKIRFY 1752
V +RF
Sbjct: 125 IVWHLRFT 132
>gnl|CDD|219521 pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling. This
entry represents the transmembrane region of the 7TM-DISM
(7TM Receptors with Diverse Intracellular Signalling
Modules).
Length = 207
Score = 36.8 bits (86), Expect = 0.053
Identities = 18/83 (21%), Positives = 31/83 (37%)
Query: 1639 PGITFWLFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHG 1698
P WL + + LL + L+F + ++K L L + L L+L+
Sbjct: 58 PNAPPWLNNKLLYLFLALLVIFFALLFARSFLELKKYLPRLDRLLLGLALLLLLLLLLAP 117
Query: 1699 LARITGPPRFWIYFIGPGVVFIL 1721
L T R ++F+L
Sbjct: 118 LFPYTLSLRLAQLLALLFILFLL 140
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 33.0 bits (77), Expect = 0.055
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 75 MFNIVDKDGDGRISFQEF 92
+F D +GDG+IS +E
Sbjct: 4 LFRQFDTNGDGKISKEEL 21
Score = 33.0 bits (77), Expect = 0.055
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 1218 MFNIVDKDGDGRISFQEF 1235
+F D +GDG+IS +E
Sbjct: 4 LFRQFDTNGDGKISKEEL 21
Score = 33.0 bits (77), Expect = 0.055
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 1377 MFNIVDKDGDGRISFQEF 1394
+F D +GDG+IS +E
Sbjct: 4 LFRQFDTNGDGKISKEEL 21
Score = 27.6 bits (63), Expect = 3.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 108 LRIIFDMCDNDRNGVIDKGELAEML 132
L+ +F D + +G I K EL +L
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
Score = 27.6 bits (63), Expect = 3.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1251 LRIIFDMCDNDRNGVIDKGELAEML 1275
L+ +F D + +G I K EL +L
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
Score = 27.6 bits (63), Expect = 3.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1410 LRIIFDMCDNDRNGVIDKGELAEML 1434
L+ +F D + +G I K EL +L
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|99794 cd06197, FNR_like_2, FAD/NAD(P) binding domain of ferredoxin
reductase-like proteins. Ferredoxin reductase (FNR) was
intially identified as a chloroplast reductase activity,
catalyzing the electron transfer from reduced iron-sulfur
protein ferredoxin to NADP+ as the final step in the
electron transport mechanism of photosystem I. FNR
transfers electrons from reduced ferredoxin to FAD
(forming FADH2 via a semiquinone intermediate) and then
transfers a hydride ion to convert NADP+ to NADPH. FNR
has since been shown to utilize a variety of electron
acceptors and donors and have a variety of physiological
functions in a variety of organisms including nitrogen
assimilation, dinitrogen fixation, steroid hydroxylation,
fatty acid metabolism, oxygenase activity, and methane
assimilation. FNR has an NAD(P)-binding sub-domain of the
alpha/beta class and a discrete (usually N-terminal)
flavin sub-domain which varies in orientation with
respect to the NAD(P) binding domain. The N-terminal
moeity may contain a flavin prosthetic group (as in
flavoenzymes) or use flavin as a substrate. Because
flavins such as FAD can exist in oxidized, semiquinone
(one-electron reduced), or fully reduced hydroquinone
forms, FNR can interact with one and two electron
carriers. FNR has a strong preference for NADP(H) vs
NAD(H).
Length = 220
Score = 37.0 bits (86), Expect = 0.055
Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 38/149 (25%)
Query: 1740 ELLPSDVIKIRF-YRPPNF--TYHSGQWVRLACTAFKNAAY-H---------------SF 1780
E++ + + F PP+ + GQ++ L ++ ++ Y H +F
Sbjct: 4 EVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTF 63
Query: 1781 TLTSAP----HENFLSCHIKAQGPWTWKLRNYFDPCNFNASEDQPKIRLEGP---FGGG- 1832
T++SAP + ++ +GP T L F + + LE P GG
Sbjct: 64 TVSSAPPHDPATDEFEITVRKKGPVTGFL--------FQVARRLREQGLEVPVLGVGGEF 115
Query: 1833 ---NQDWYKFEVAVMVGGGIGVTPYASIL 1858
V + GG+G+TP+ ++L
Sbjct: 116 TLSLPGEGAERKMVWIAGGVGITPFLAML 144
>gnl|CDD|216630 pfam01654, Bac_Ubq_Cox, Bacterial Cytochrome Ubiquinol Oxidase. This
family are the alternative oxidases found in many
bacteria which oxidise ubiquinol and reduce oxygen as
part of the electron transport chain. This family is the
subunit I of the oxidase E. coli has two copies of the
oxidase, bo and bd', both of which are represented here
In some nitrogen fixing bacteria, e.g. Klebsiella
pneumoniae this oxidase is responsible for removing
oxygen in microaerobic conditions, making the oxidase
required for nitrogen fixation. This subunit binds a
single b-haem, through ligands at His186 and Met393
(using SW:P11026 numbering). In addition His19 is a
ligand for the haem b found in subunit II.
Length = 432
Score = 37.5 bits (88), Expect = 0.080
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 1627 LTAEVHFPSDYKP--GITFWLFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAH 1684
L FP DY+P + FW F+ + G+ G L+ ++ +L T R K WL
Sbjct: 298 LNDLPEFPGDYRPPVALVFWSFRIMVGL-GFLMLLLALLGLWL---TRRGKLLRSRWL-- 351
Query: 1685 SLYVFLFALML 1695
L + + + L
Sbjct: 352 -LRLLVLMIPL 361
>gnl|CDD|197477 smart00027, EH, Eps15 homology domain. Pair of EF hand motifs that
recognise proteins containing Asn-Pro-Phe (NPF)
sequences.
Length = 96
Score = 34.2 bits (79), Expect = 0.11
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 76 FNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELA 129
F +DK+ DG ++ + +L G + L I+++ D D +G +DK E A
Sbjct: 16 FRSLDKNQDGTVTGAQAKP--ILLKSGLPQTLLAKIWNLADIDNDGELDKDEFA 67
Score = 34.2 bits (79), Expect = 0.11
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 1219 FNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELA 1272
F +DK+ DG ++ + +L G + L I+++ D D +G +DK E A
Sbjct: 16 FRSLDKNQDGTVTGAQAKP--ILLKSGLPQTLLAKIWNLADIDNDGELDKDEFA 67
Score = 34.2 bits (79), Expect = 0.11
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 1378 FNIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELA 1431
F +DK+ DG ++ + +L G + L I+++ D D +G +DK E A
Sbjct: 16 FRSLDKNQDGTVTGAQAKP--ILLKSGLPQTLLAKIWNLADIDNDGELDKDEFA 67
>gnl|CDD|100082 cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease (S2P), a zinc
metalloprotease (MEROPS family M50B), regulates
intramembrane proteolysis (RIP), and is involved in the
pro-sigmaK pathway of bacterial spore formation. SpoIVFB
(sporulation protein, stage IV cell wall formation, F
locus, promoter-distal B) is one of 4 proteins involved
in endospore formation; the others are SpoIVFA
(sporulation protein, stage IV cell wall formation, F
locus, promoter-proximal A), BofA (bypass-of-forespore
A), and SpoIVB (sporulation protein, stage IV cell wall
formation, B locus). SpoIVFB is negatively regulated by
SpoIVFA and BofA and activated by SpoIVB. It is thought
that SpoIVFB, SpoIVFA, and BofA are located in the
mother-cell membrane that surrounds the forespore and
that SpoIVB is secreted from the forespore into the space
between the two where it activates SpoIVFB.
Length = 208
Score = 35.2 bits (82), Expect = 0.21
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 25/97 (25%)
Query: 1639 PGITFWLFQTITGITGVLLFVIMVLIF--VFAHPTIRKKAYNWFWLAHSLY-------VF 1689
I L + + +L + +L+F V H L H+L V
Sbjct: 12 LLIAILLGPGVGPVAWLLGLLEALLLFLSVLLHE-----------LGHALVARRYGIRVR 60
Query: 1690 LFALMLIHGLARITGPPR-----FWIYFIGPGVVFIL 1721
L+ G+A + P F I GP V +L
Sbjct: 61 SITLLPFGGVAELEEEPETPKEEFVIALAGPLVSLLL 97
>gnl|CDD|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH
binding domain acts as part of the multi-component
bacterial oxygenases which oxidize hydrocarbons using
oxygen as the oxidant. Electron transfer is from NADH via
FAD (in the oxygenase reductase) and an [2FE-2S]
ferredoxin center (fused to the FAD/NADH domain and/or
discrete) to the oxygenase. Dioxygenases add both atoms
of oxygen to the substrate, while mono-oxygenases (aka
mixed oxygenases) add one atom to the substrate and one
atom to water. In dioxygenases, Class I enzymes are 2
component, containing a reductase with Rieske type
[2Fe-2S] redox centers and an oxygenase. Class II are 3
component, having discrete flavin and ferredoxin proteins
and an oxygenase. Class III have 2 [2Fe-2S] centers, one
fused to the flavin domain and the other separate.
Length = 224
Score = 35.3 bits (82), Expect = 0.21
Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 20/133 (15%)
Query: 1736 ILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCH 1794
++ E L D+ +R + +GQ+V + + + +++ + P+E + H
Sbjct: 1 VVSVERLTHDIAVVRLQLDQPLPFWAGQYVNVT-VPGRPRTWRAYSPANPPNEDGEIEFH 59
Query: 1795 IKA-QGPWTWKLRNYFDPCNFNASEDQPKIRLEGPFG-----GGNQDWYKFEVAVMVGGG 1848
++A G N + + ++RL GP+G + V + + GG
Sbjct: 60 VRAVPGGRV---SNAL----HDELKVGDRVRLSGPYGTFYLRRDHDR----PV-LCIAGG 107
Query: 1849 IGVTPYASILNDL 1861
G+ P +I+ D
Sbjct: 108 TGLAPLRAIVEDA 120
>gnl|CDD|216313 pfam01127, Sdh_cyt, Succinate dehydrogenase/Fumarate reductase
transmembrane subunit. This family includes a
transmembrane protein from both the Succinate
dehydrogenase and Fumarate reductase complexes.
Length = 123
Score = 33.9 bits (78), Expect = 0.23
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 1637 YKPGIT--FWLFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWF----WLAHSLYVFL 1690
Y+ + + ITG+ +L + ++L + + ++Y WL+ + L
Sbjct: 14 YRAHLGTILSILHRITGVALAVLLIHLLLWLLLLALLLGPESYARVVGVAWLSSPFKLIL 73
Query: 1691 FALMLI----HGLA 1700
L+L+ H
Sbjct: 74 LLLLLLALFYHAAN 87
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100
hierarchy contains only S-100 EF-hand domains, other
EF-hands have been modeled separately. S100 proteins
are expressed exclusively in vertebrates, and are
implicated in intracellular and extracellular
regulatory activities. Intracellularly, S100 proteins
act as Ca-signaling or Ca-buffering proteins. The most
unusual characteristic of certain S100 proteins is
their occurrence in extracellular space, where they act
in a cytokine-like manner through RAGE, the receptor
for advanced glycation products. Structural data
suggest that many S100 members exist within cells as
homo- or heterodimers and even oligomers;
oligomerization contributes to their functional
diversification. Upon binding calcium, most S100
proteins change conformation to a more open structure
exposing a hydrophobic cleft. This hydrophobic surface
represents the interaction site of S100 proteins with
their target proteins. There is experimental evidence
showing that many S100 proteins have multiple binding
partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such
as S100A1,-3,-4,-6,-7,-10,-11,and -13), this group
includes the ''fused'' gene family, a group of calcium
binding S100-related proteins. The ''fused'' gene
family includes multifunctional epidermal
differentiation proteins - profilaggrin, trichohyalin,
repetin, hornerin, and cornulin; functionally these
proteins are associated with keratin intermediate
filaments and partially crosslinked to the cell
envelope. These ''fused'' gene proteins contain
N-terminal sequence with two Ca-binding EF-hands motif,
which may be associated with calcium signaling in
epidermal cells and autoprocessing in a
calcium-dependent manner. In contrast to S100 proteins,
"fused" gene family proteins contain an extraordinary
high number of almost perfect peptide repeats with
regular array of polar and charged residues similar to
many known cell envelope proteins.
Length = 88
Score = 32.8 bits (76), Expect = 0.27
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 58 EFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFL 93
E + L + D V + +D + DG++ FQEFL
Sbjct: 39 ELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFL 74
Score = 32.8 bits (76), Expect = 0.27
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 1201 EFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFL 1236
E + L + D V + +D + DG++ FQEFL
Sbjct: 39 ELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFL 74
Score = 32.8 bits (76), Expect = 0.27
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 1360 EFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFL 1395
E + L + D V + +D + DG++ FQEFL
Sbjct: 39 ELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFL 74
>gnl|CDD|240157 cd05031, S-100A10_like, S-100A10_like: S-100A10 domain found in
proteins similar to S100A10. S100A10 is a member of the
S100 family of EF-hand superfamily of calcium-binding
proteins. Note that the S-100 hierarchy, to which this
S-100A1_like group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately.
S100 proteins are expressed exclusively in vertebrates,
and are implicated in intracellular and extracellular
regulatory activities. A unique feature of S100A10 is
that it contains mutation in both of the calcium
binding sites, making it calcium insensitive. S100A10
has been detected in brain, heart, gastrointestinal
tract, kidney, liver, lung, spleen, testes, epidermis,
aorta, and thymus. Structural data supports the homo-
and hetero-dimeric as well as hetero-tetrameric nature
of the protein. S100A10 has multiple binding partners
in its calcium free state and is therefore involved in
many diverse biological functions.
Length = 94
Score = 32.8 bits (75), Expect = 0.33
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 54 LSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVV 97
L E + L + D + V + +D++ DG+++F+EF+ V
Sbjct: 35 LMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78
Score = 32.8 bits (75), Expect = 0.33
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 1197 LSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVV 1240
L E + L + D + V + +D++ DG+++F+EF+ V
Sbjct: 35 LMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78
Score = 32.8 bits (75), Expect = 0.33
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 1356 LSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTVV 1399
L E + L + D + V + +D++ DG+++F+EF+ V
Sbjct: 35 LMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78
>gnl|CDD|224191 COG1272, COG1272, Predicted membrane protein, hemolysin III homolog
[General function prediction only].
Length = 226
Score = 34.1 bits (79), Expect = 0.49
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 1644 WLFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFL--FALMLIHGLAR 1701
L + G+ L ++ F KK + L LY+ + L++I L
Sbjct: 115 PLGWILLGLIWGLALAGILFKLFF------KKRFRKLSLV--LYLAMGWLGLIVIKPLIA 166
Query: 1702 ITGPPRFWIYFIGPGVVFIL 1721
G + +G GV++ +
Sbjct: 167 KLGLIGLVLLALG-GVLYSV 185
>gnl|CDD|240152 cd05025, S-100A1, S-100A1: S-100A1 domain found in proteins
similar to S100A1. S100A1 is a calcium-binding protein
belonging to a large S100 vertebrate-specific protein
family within the EF-hand superfamily of
calcium-binding proteins. Note that the S-100
hierarchy, to which this S-100A1 group belongs,
contains only S-100 EF-hand domains, other EF-hands
have been modeled separately. As is the case with many
other members of S100 protein family, S100A1 is
implicated in intracellular and extracellular
regulatory activities, including interaction with
myosin-associated twitchin kinase, actin-capping
protein CapZ, sinapsin I, and tubulin. Structural data
suggests that S100A1 proteins exist within cells as
antiparallel homodimers, while heterodimers with
S100A4 and S100B also has been reported. Upon binding
calcium S100A1 changes conformation to expose a
hydrophobic cleft which is the interaction site of
S100A1 with its more that 20 known target proteins.
Length = 92
Score = 32.2 bits (73), Expect = 0.58
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 53 SLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFL 93
L + E + L + DA V + +D++GDG + FQEF+
Sbjct: 35 DLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFV 75
Score = 32.2 bits (73), Expect = 0.58
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 1196 SLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFL 1236
L + E + L + DA V + +D++GDG + FQEF+
Sbjct: 35 DLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFV 75
Score = 32.2 bits (73), Expect = 0.58
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 1355 SLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEFL 1395
L + E + L + DA V + +D++GDG + FQEF+
Sbjct: 35 DLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFV 75
>gnl|CDD|99808 cd06212, monooxygenase_like, The oxygenase reductase FAD/NADH binding
domain acts as part of the multi-component bacterial
oxygenases which oxidize hydrocarbons. These flavoprotein
monooxygenases use molecular oxygen as a substrate and
require reduced FAD. One atom of oxygen is incorportated
into the aromatic compond, while the other is used to
form a molecule of water. In contrast dioxygenases add
both atoms of oxygen to the substrate.
Length = 232
Score = 33.8 bits (78), Expect = 0.59
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 15/132 (11%)
Query: 1736 ILETELLPSDV--IKIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLS 1792
++ E L D+ +++R P + +GQ+V + SF++ + P + L
Sbjct: 5 VVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPG--TEETRSFSMANTPADPGRLE 62
Query: 1793 CHIKA--QGPWTWKLRNYFDPCNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIG 1850
IK G ++ L + P + + GP+G + V++GGG G
Sbjct: 63 FIIKKYPGGLFSSFLDDGLAV-------GDP-VTVTGPYGTCTLRESRDRPIVLIGGGSG 114
Query: 1851 VTPYASILNDLV 1862
+ P S+L D+
Sbjct: 115 MAPLLSLLRDMA 126
>gnl|CDD|225580 COG3038, CybB, Cytochrome B561 [Energy production and conversion].
Length = 181
Score = 33.0 bits (76), Expect = 0.91
Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 11/90 (12%)
Query: 1631 VHFPSDYKPGITFWLFQTITGITGVLLFVIMVL----IFVFAHPTIRKKAYNWFW----L 1682
P PG+ F L++ I G+L+ +MVL P I W L
Sbjct: 34 GFLP--RGPGLYFLLYELHKSI-GILVLALMVLRLLWRLRNPAPPIVPGPPPWQRKAAKL 90
Query: 1683 AHSLYVFLFALMLIHGLARITGPPRFWIYF 1712
H L + + G T R F
Sbjct: 91 GHLALYLLMLALPLSGYLLSTASGRPISVF 120
>gnl|CDD|183704 PRK12726, PRK12726, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 407
Score = 33.9 bits (77), Expect = 0.94
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 24/146 (16%)
Query: 1385 GDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTT 1444
DGR+ FQE V+ +R T+D L+ K +L EML + E+A++T
Sbjct: 62 ADGRMDFQETFQKSVVKNRPKTDDLLK---------------KEKLLEMLAAGAELAQST 106
Query: 1445 SLTD---SQVTELIDGMFQDAGLDSKDFLTYQDFKLMMRDYKGDFVAIGLDCKGAKQNFL 1501
L + +Q EL + A L+ + + ++ R+ DFV L +G ++
Sbjct: 107 PLLEERKTQEEELSAMRLELAALNRELAVKMRE----EREQNSDFVKF-LKGRGISDTYV 161
Query: 1502 DTSTNVARMTSFNIEPI-LDEDKSWF 1526
R +E LD+ WF
Sbjct: 162 ADFMQAGRKQFKQVETAHLDDITDWF 187
Score = 32.8 bits (74), Expect = 2.2
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 26/135 (19%)
Query: 1226 GDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGELAEMLRSLVEMARTT 1285
DGR+ FQE V+ +R T+D L+ K +L EML + E+A++T
Sbjct: 62 ADGRMDFQETFQKSVVKNRPKTDDLLK---------------KEKLLEMLAAGAELAQST 106
Query: 1286 SLTD---SQVTELIDGMFQSP---RELMLAKAETRERRQKKLEHF----FREAYALTFGL 1335
L + +Q EL + REL + E RE+ ++ + Y F +
Sbjct: 107 PLLEERKTQEEELSAMRLELAALNRELAVKMREEREQNSDFVKFLKGRGISDTYVADF-M 165
Query: 1336 KPGEKRRRDDETGEV 1350
+ G K+ + ET +
Sbjct: 166 QAGRKQFKQVETAHL 180
>gnl|CDD|187761 cd09321, TDT_like_3, The Tellurite-resistance/Dicarboxylate
Transporter (TDT) family. The
Tellurite-resistance/Dicarboxylate Transporter (TDT)
family includes members from all three kingdoms, but only
three members of the family have been functionally
characterized: the TehA protein of E. coli functioning as
a tellurite-resistance uptake permease, the Mae1 protein
of S. pombe functioning in the uptake of malate and other
dicarboxylates, and the sulfite efflux pump (SSU1) of
Saccharomyces cerevisiae. In plants, the plasma membrane
protein SLAC1 (Slow Anion Channel-Associated 1), which is
preferentially expressed in guard cells, encodes a
distant homolog of fungal and bacterial
dicarboxylate/malic acid transport proteins. SLAC1 is
essential in mediating stomatal responses to
physiological and stress stimuli. Members of the TDT
family exhibit 10 putative transmembrane a-helical
spanners (TMSs).
Length = 327
Score = 33.4 bits (77), Expect = 1.1
Identities = 44/230 (19%), Positives = 75/230 (32%), Gaps = 82/230 (35%)
Query: 1544 IFYL-FIFYVITIALFVERFIHYSFLAEHTDLRH-IMGQYIPLDSHIQFHKIAACTALFF 1601
+ YL F+ + + + ++ R+I Y DL+H ++ + P IA
Sbjct: 36 LTYLNFLLFFVLLVPWLLRWILY-PKEALADLKHPVLSNFYPTMP------IAL------ 82
Query: 1602 SLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGITFWLFQTITGITGVLLFVIM 1661
L+ +I L +T W I G + +F +
Sbjct: 83 -LVLATNILIVGQGPLGYSL------------------ALTLW----ILGSILIFIFSFI 119
Query: 1662 VLIFVFAHPTIRKKAYN--WF---------------WLAHS------------------- 1685
V +F + I + N WF + H
Sbjct: 120 VSYIMFINEEIPIEHINPAWFIPPVGLIVIPLAGNFLIPHFPGAWQESILVINLFGFGIG 179
Query: 1686 --LYVFLFALML----IHGLARITGPPRFWIYF--IGPGVVFILDKVVSL 1727
L++FL A++L +H P FWI IG GVV +++ V +L
Sbjct: 180 FFLFLFLLAIILHRLILHEPPPPELAPTFWINLAPIGAGVVALINLVKAL 229
>gnl|CDD|223949 COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases)
family 1 [Energy production and conversion].
Length = 266
Score = 33.4 bits (77), Expect = 1.1
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 1843 VMVGGGIGVTPYASILNDL 1861
+++ GGIG+TP+ S+L L
Sbjct: 114 LLLAGGIGITPFLSMLRTL 132
>gnl|CDD|239580 cd03500, SQR_TypeA_SdhD_like, Succinate:quinone oxidoreductase (SQR)
Type A subfamily, Succinate dehydrogenase D (SdhD)-like
subunit; SQR catalyzes the oxidation of succinate to
fumarate coupled to the reduction of quinone to quinol.
Members of this subfamily reduce low potential quinones
such as menaquinone and thermoplasmaquinone. SQR is also
called succinate dehydrogenase or Complex II, and is part
of the citric acid cycle and the aerobic respiratory
chain. SQR is composed of a flavoprotein catalytic
subunit, an iron-sulfur protein and one or two
hydrophobic transmembrane subunits. Members of this
subfamily are similar to the Thermoplasma acidophilum SQR
and are classified as Type A because they contain two
transmembrane subunits as well as two heme groups.
Although there are no structures available for this
subfamily, the presence of two hemes has been proven
spectroscopically for T. acidophilum. The two membrane
anchor subunits are similar to the SdhD and SdhC subunits
of bacterial SQRs, which contain heme and quinone binding
sites. The two-electron oxidation of succinate in the
flavoprotein active site is coupled to the two-electron
reduction of quinone in the membrane anchor subunits via
electron transport through FAD and three iron-sulfur
centers. The reversible reduction of quinone is an
essential feature of respiration, allowing transfer of
electrons between respiratory complexes.
Length = 106
Score = 31.5 bits (72), Expect = 1.2
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 1644 WLFQTITGITGVLLFVI----MVLIFVFAHPTIR-----KKAYNWFWLAHSLYVFLFALM 1694
WLFQ ITG+ L+F++ V I + + W + L L
Sbjct: 5 WLFQRITGV--FLVFLLAGHFWVQHMDNGGDVIDFAFVANRLASPLWKV--WDLLLLVLA 60
Query: 1695 LIHGL 1699
L+HG
Sbjct: 61 LLHGG 65
>gnl|CDD|240150 cd05023, S-100A11, S-100A11: S-100A11 domain found in proteins
similar to S100A11. S100A11 is a member of the S-100
domain family within EF-hand Ca2+-binding proteins
superfamily. Note that the S-100 hierarchy, to which
this S-100A11 group belongs, contains only S-100
EF-hand domains, other EF-hands have been modeled
separately. S100 proteins exhibit unique patterns of
tissue- and cell type-specific expression and have been
implicated in the Ca2+-dependent regulation of diverse
physiological processes, including cell cycle
regulation, differentiation, growth, and metabolic
control . S100 proteins have also been associated with
a variety of pathological events, including neoplastic
transformation and neurodegenerative diseases such as
Alzheimer's, usually via over expression of the
protein. S100A11 is expressed in smooth muscle and
other tissues and involves in calcium-dependent
membrane aggregation, which is important for cell
vesiculation . As is the case for many other S100
proteins, S100A11 is homodimer, which is able to form a
heterodimer with S100B through subunit exchange. Ca2+
binding to S100A11 results in a conformational change
in the protein, exposing a hydrophobic surface that
interacts with target proteins. In addition to binding
to annexin A1 and A6 S100A11 also interacts with actin
and transglutaminase.
Length = 89
Score = 30.5 bits (69), Expect = 1.7
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 52 TSLSRAEFASAL---------GMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTV 96
LS+ EF S + K V RMM +D + DG++ FQEFL+ +
Sbjct: 26 YQLSKTEFLSFMNTELASFTKNQKDPGVLDRMM-KKLDLNSDGQLDFQEFLNLI 78
Score = 30.5 bits (69), Expect = 1.7
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 1195 TSLSRAEFASAL---------GMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTV 1239
LS+ EF S + K V RMM +D + DG++ FQEFL+ +
Sbjct: 26 YQLSKTEFLSFMNTELASFTKNQKDPGVLDRMM-KKLDLNSDGQLDFQEFLNLI 78
Score = 30.5 bits (69), Expect = 1.7
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 1354 TSLSRAEFASAL---------GMKSDAVFVRMMFNIVDKDGDGRISFQEFLDTV 1398
LS+ EF S + K V RMM +D + DG++ FQEFL+ +
Sbjct: 26 YQLSKTEFLSFMNTELASFTKNQKDPGVLDRMM-KKLDLNSDGQLDFQEFLNLI 78
>gnl|CDD|99817 cd06221, sulfite_reductase_like, Anaerobic sulfite reductase contains
an FAD and NADPH binding module with structural
similarity to ferredoxin reductase and sequence
similarity to dihydroorotate dehydrogenases. Clostridium
pasteurianum inducible dissimilatory type sulfite
reductase is linked to ferredoxin and reduces NH2OH and
SeO3 at a lesser rate than it's normal substate SO3(2-).
Dihydroorotate dehydrogenases (DHODs) catalyze the only
redox reaction in pyrimidine de novo biosynthesis. They
catalyze the oxidation of (S)-dihydroorotate to orotate
coupled with the reduction of NAD+.
Length = 253
Score = 32.6 bits (75), Expect = 1.7
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 20/120 (16%)
Query: 1748 KIRFYRPPNFTYHSGQWVRLACTAFKNAAYHSFTLTSAPHE-NFLSCHIKAQGPWTWKLR 1806
++ FT+ GQ+V L+ A +++S P L I+ G T L
Sbjct: 17 RLEDDDEELFTFKPGQFVMLSLPGVGEAP---ISISSDPTRRGPLELTIRRVGRVTEAL- 72
Query: 1807 NYFDPCNFNASEDQPKIRLEGPFGGGNQDW----YKFEVAVMVGGGIGVTPYASILNDLV 1862
+ L GPFG G + K + ++V GG+G+ P S++N ++
Sbjct: 73 -------HELKPGD-TVGLRGPFGNG---FPVEEMKGKDLLLVAGGLGLAPLRSLINYIL 121
>gnl|CDD|99781 cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding domain of
flavohemoglobin. Flavohemoglobins have a globin domain
containing a B-type heme fused with a ferredoxin
reductase-like FAD/NAD-binding domain. Flavohemoglobins
detoxify nitric oxide (NO) via an NO dioxygenase
reaction. The hemoglobin domain adopts a globin fold with
an embedded heme molecule. Flavohemoglobins also have a
C-terminal reductase domain with bindiing sites for FAD
and NAD(P)H. This domain catalyzes the conversion of NO +
O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen
transport function of hemoglobins, flavohemoglobins seem
to act in NO dioxygenation and NO signalling.
Length = 247
Score = 32.5 bits (75), Expect = 2.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 1843 VMVGGGIGVTPYASILNDLV 1862
V++ G+G+TP S+L L
Sbjct: 117 VLISAGVGITPMLSMLEALA 136
>gnl|CDD|204523 pfam10591, SPARC_Ca_bdg, Secreted protein acidic and rich in
cysteine Ca binding region. The SPARC_Ca_bdg domain of
Secreted Protein Acidic and Rich in Cysteine is
responsible for the anti-spreading activity of human
urothelial cells. It is rich in alpha-helices. This
extracellular calcium-binding domain contains two
EF-hands that each coordinates one Ca2+ ion, forming a
helix-loop-helix structure that not only drives the
conformation of the protein but is also necessary for
biological activity. The anti-spreading activity was
dependent on the coordination of Ca2+ by a Glu residue
at the Z position of EF-hand 2.
Length = 112
Score = 30.8 bits (70), Expect = 2.1
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 72 VRMMFNIVDKDGDGRISFQEF--LDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGE 127
+ MFN +D + DG +S E L ++ + F CD D++G+I E
Sbjct: 55 LGWMFNQLDTNHDGYLSRSELAPLRAPLVPMEHCI----KPFFKSCDADKDGLISLRE 108
Score = 30.8 bits (70), Expect = 2.1
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 1215 VRMMFNIVDKDGDGRISFQEF--LDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGE 1270
+ MFN +D + DG +S E L ++ + F CD D++G+I E
Sbjct: 55 LGWMFNQLDTNHDGYLSRSELAPLRAPLVPMEHCI----KPFFKSCDADKDGLISLRE 108
Score = 30.8 bits (70), Expect = 2.1
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 1374 VRMMFNIVDKDGDGRISFQEF--LDTVVLFSRGHTEDKLRIIFDMCDNDRNGVIDKGE 1429
+ MFN +D + DG +S E L ++ + F CD D++G+I E
Sbjct: 55 LGWMFNQLDTNHDGYLSRSELAPLRAPLVPMEHCI----KPFFKSCDADKDGLISLRE 108
>gnl|CDD|217749 pfam03824, NicO, High-affinity nickel-transport protein. High
affinity nickel transporters involved in the
incorporation of nickel into H2-uptake hydrogenase and
urease enzymes. Essential for the expression of
catalytically active hydrogenase and urease. Ion uptake
is dependent on proton motive force. HoxN in Alcaligenes
eutrophus is thought to be an integral membrane protein
with seven transmembrane helices. The family also
includes a cobalt transporter.
Length = 278
Score = 32.4 bits (74), Expect = 2.1
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 17/99 (17%)
Query: 1679 WFWLAHSLYVFLFALMLIHGLARITGPPRF--------------WIYFIGPGVVFILDKV 1724
F L HS V L AL+L G+ + P ++ IG G + +L ++
Sbjct: 43 LFSLGHSSVVGLVALLLALGVKLVLRLPSLQEIGSTIGTLVSGSFLLIIGLGNLLLLREL 102
Query: 1725 VSLRTKYMALDILETEL---LPSDVIKIRFYRPPNFTYH 1760
L K E +L L + R P T H
Sbjct: 103 RHLFRKLRRGRAPEPDLEAALQKRGLLSRILGPRLVTKH 141
>gnl|CDD|176490 cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrome b(561), including
the FRRS1 gene product. Cytochrome b(561), as found in
eukaryotes, similar to and including the human FRRS1 gene
product (ferric-chelate reductase 1), also called SDR-2
(stromal cell-derived receptor 2). This family comprises
a variety of domain architectures, many of which contain
dopamine beta-monooxygenase (DOMON) domains. The protein
might act as a ferric-chelate reductase, catalyzing the
reduction of Fe(3+) to Fe(2+), such as associated with
the transport of iron from the endosome to the cytoplasm.
It is assumed that this protein uses ascorbate as the
electron donor. Belongs to the cytochrome b(561) family,
which are secretory vesicle-specific electron transport
proteins. Cytochromes b(561) are integral membrane
proteins that bind two heme groups non-covalently, and
may have six alpha-helical trans-membrane segments.
Length = 191
Score = 31.9 bits (73), Expect = 2.2
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 1648 TITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHG------LAR 1701
I GI + L ++ L+ + KK W W L L +++
Sbjct: 106 AILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLAGA 165
Query: 1702 ITGPPRFWIYFIGPGVVFIL 1721
T Y + V+ ++
Sbjct: 166 GTPKAWKIAYGVVVAVLALV 185
>gnl|CDD|193239 pfam12763, efhand_3, Cytoskeletal-regulatory complex EF hand. This
is an efhand family from the N-terminal of actin
cytoskeleton-regulatory complex END3 and similar
proteins from fungi and closely related species.
Length = 104
Score = 30.4 bits (69), Expect = 2.5
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 30/108 (27%)
Query: 18 KLEHFFREAYALTF-GLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMF 76
+LE + + Y F GLKP + D+ V+ + L + A ++
Sbjct: 3 RLEEWEIKKYWEIFSGLKPENNKLTGDQVSPVLKNSRLPDDQLAK-------------IW 49
Query: 77 NIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVID 124
++ D D DG++ F+EF +R+IFD+ NG I
Sbjct: 50 DLADIDSDGKLDFEEFCIA------------MRLIFDLV----NGNIA 81
Score = 30.4 bits (69), Expect = 2.5
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 30/108 (27%)
Query: 1161 KLEHFFREAYALTF-GLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMF 1219
+LE + + Y F GLKP + D+ V+ + L + A ++
Sbjct: 3 RLEEWEIKKYWEIFSGLKPENNKLTGDQVSPVLKNSRLPDDQLAK-------------IW 49
Query: 1220 NIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVID 1267
++ D D DG++ F+EF +R+IFD+ NG I
Sbjct: 50 DLADIDSDGKLDFEEFCIA------------MRLIFDLV----NGNIA 81
Score = 30.4 bits (69), Expect = 2.5
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 30/108 (27%)
Query: 1320 KLEHFFREAYALTF-GLKPGEKRRRDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMF 1378
+LE + + Y F GLKP + D+ V+ + L + A ++
Sbjct: 3 RLEEWEIKKYWEIFSGLKPENNKLTGDQVSPVLKNSRLPDDQLAK-------------IW 49
Query: 1379 NIVDKDGDGRISFQEFLDTVVLFSRGHTEDKLRIIFDMCDNDRNGVID 1426
++ D D DG++ F+EF +R+IFD+ NG I
Sbjct: 50 DLADIDSDGKLDFEEFCIA------------MRLIFDLV----NGNIA 81
>gnl|CDD|239490 cd03396, PAP2_like_6, PAP2_like_6 proteins. PAP2 is a super-family of
phosphatases and haloperoxidases. This subgroup, which
mainly contains bacterial proteins, lacks functional
characterization and may act as a membrane-associated
lipid phosphatase.
Length = 197
Score = 31.9 bits (73), Expect = 2.5
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 1641 ITFWLFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHGLA 1700
I L + + L V+++ + + R + L L + L L+++ L
Sbjct: 29 ILETLLHLGGRLLSIALAVLLLALALLFFRRKRLRRRRRALLLLILVIGL-GLLVVAILK 87
Query: 1701 RITGPPRFW 1709
G PR W
Sbjct: 88 SHWGRPRPW 96
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 32.3 bits (73), Expect = 2.8
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 14/107 (13%)
Query: 319 DRKRRALKMKQEELKNGPSKANLAVGTVDKMAVREWLHANHKRFVKIRLGPETCLHTVDR 378
D++R ++ KQ+E KN P A+ + DK K ++I+ E L D
Sbjct: 244 DKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDH 303
Query: 379 KGEKLRTVNFKNCDTVTIEESQFSTNREFQH--QAKTSIEDFYGDGQ 423
K L+ +ES+ S +A+ E D Q
Sbjct: 304 KAFDLK------------QESKASEKEAEDKELEAQKKREPVAEDLQ 338
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily. Members of
the MIP superfamily function as membrane channels that
selectively transport water, small neutral molecules, and
ions out of and between cells. The channel proteins share
a common fold: the N-terminal cytosolic portion followed
by six transmembrane helices, which might have arisen
through gene duplication. On the basis of sequence
similarity and functional characteristics, the
superfamily can be subdivided into two major groups:
water-selective channels called aquaporins (AQPs) and
glycerol uptake facilitators (GlpFs). AQPs are found in
all three kingdoms of life, while GlpFs have been
characterized only within microorganisms.
Length = 228
Score = 31.5 bits (72), Expect = 3.3
Identities = 28/161 (17%), Positives = 45/161 (27%), Gaps = 50/161 (31%)
Query: 1593 IAACTALFFSLIHTVGHIIN--------------FYHVSTQPLEHLHCLTAEVHFPSDYK 1638
+A F LI + +II Y+ + F +
Sbjct: 66 LALAVGGRFPLIRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLGAN-NIVAGIFGTYPS 124
Query: 1639 PGITFW---LFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALML 1695
PG++ + I T +L+ V+ T LA L + +
Sbjct: 125 PGVSNGNAFFVEFI--GTFILVLVVFAT-------TDDPNGPPPGGLAP-LAIG-LLVAA 173
Query: 1696 IHGL-----------ARITGP----------PRFWIYFIGP 1715
I AR GP FW+Y++GP
Sbjct: 174 IGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGP 214
>gnl|CDD|178569 PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase family protein.
Length = 325
Score = 31.9 bits (72), Expect = 3.8
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 1723 KVVSLRTKYMALDILETELLPSDVIKIRFYRPPNFTYHSGQWVRLACTAFKNAAYH 1778
K V L + A+ ET+L P+DV+ F+ P+F QW L+ T ++AA+
Sbjct: 122 KRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWR 177
>gnl|CDD|235981 PRK07239, PRK07239, bifunctional uroporphyrinogen-III
synthetase/response regulator domain protein; Validated.
Length = 381
Score = 31.9 bits (73), Expect = 3.8
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 16/45 (35%)
Query: 129 AEMLRSL---------VEMA----RTSFPSGGAATTVVKIVLRGY 160
++L +L VE A RT+ TVVK RGY
Sbjct: 329 EDLLAALPGGGTDEHAVETAVARLRTALGDPKLVQTVVK---RGY 370
>gnl|CDD|236519 PRK09442, panF, sodium/panthothenate symporter; Provisional.
Length = 483
Score = 31.8 bits (73), Expect = 4.0
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 1645 LFQTITGI---TGVLLFVIMVLIFVF 1667
L +T TGI TG+L+F I V ++
Sbjct: 149 LLETATGISYETGLLIFGITVALYTA 174
>gnl|CDD|239575 cd03495, SQR_TypeC_SdhD_like, Succinate:quinone oxidoreductase (SQR)
Type C subfamily, Succinate dehydrogenase D (SdhD)
subunit-like; composed of predominantly uncharacterized
bacterial proteins with similarity to the E. coli SdhD
subunit. One characterized protein is the respiratory
Complex II SdhD subunit of the only eukaryotic member,
Reclinomonas americana. SQR catalyzes the oxidation of
succinate to fumarate coupled to the reduction of quinone
to quinol. It is also called succinate dehydrogenase or
Complex II, and is part of the citric acid cycle and the
aerobic respiratory chain. SQR is composed of a
flavoprotein catalytic subunit, an iron-sulfur protein
and one or two hydrophobic transmembrane subunits. E.
coli SQR is classified as Type C SQRs because it contains
two transmembrane subunits and one heme group. The SdhD
and SdhC subunits are membrane anchor subunits containing
heme and quinone binding sites. The two-electron
oxidation of succinate in the flavoprotein active site is
coupled to the two-electron reduction of quinone in the
membrane anchor subunits via electron transport through
FAD and three iron-sulfur centers. The reversible
reduction of quinone is an essential feature of
respiration, allowing transfer of electrons between
respiratory complexes.
Length = 100
Score = 29.9 bits (68), Expect = 4.0
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 14/62 (22%)
Query: 1644 WLFQTITGITGVLLFVIMVLIFVFA------HPTIRKKAYNWFWLAHSLYVFLFALMLIH 1697
W Q +T + L+ +++ +F A + + WLAH L L L+
Sbjct: 3 WWAQRVTAV--ALVPLVLWFVFSVALLLGASYAEVVA------WLAHPFNAILLILTLVS 54
Query: 1698 GL 1699
Sbjct: 55 AF 56
>gnl|CDD|166698 PLN03059, PLN03059, beta-galactosidase; Provisional.
Length = 840
Score = 31.9 bits (72), Expect = 4.2
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 34/118 (28%)
Query: 924 LW-DIIVNATDIGADAIQKNVFFWNATDPCPQPAQLNASMMMPCSYLKGFDYFEGS---- 978
+W D+I A D G D IQ V FWN +P P G YFE
Sbjct: 60 MWPDLIQKAKDGGLDVIQTYV-FWNGHEPSP-----------------GNYYFEDRYDLV 101
Query: 979 ------ELAYIYACLFLMVVPFICGAAGYGVIKLQDRKRRALKMKQEELKNGPSKANL 1030
+ A +Y + L + P+IC +G + + ++ + + NGP KA +
Sbjct: 102 KFIKVVQAAGLY--VHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTD---NGPFKAAM 154
>gnl|CDD|190033 pfam01554, MatE, MatE. The MatE domain.
Length = 161
Score = 30.6 bits (70), Expect = 4.2
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 1646 FQTITGITGVLLFVIMVLIFVFAH---------PTIRKKAYNWFWLAHSLYVFLFALMLI 1696
+ ++ ++ I +LI +F + + A + + FL ++
Sbjct: 72 LRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILALGIPFLSLQFVL 131
Query: 1697 HGLAR---ITGPPRFWIYFIGPGVVFILD 1722
G R T PP +I I + L+
Sbjct: 132 SGFLRGAGDTKPP-LYINLISLLLNIPLN 159
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 518
Score = 32.0 bits (73), Expect = 4.3
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 1654 GVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFAL-MLIHGLARITGPPRFWIYF 1712
+LL ++ +F A P +W+WLA + L L L+ G +
Sbjct: 17 RLLLALVFGALFALAFP-----PPDWWWLA---WFSLAPLLWLVRGAPTSWEGLAKSGFL 68
Query: 1713 IGPGVVFIL 1721
G G
Sbjct: 69 FGFGFFLAG 77
>gnl|CDD|213906 TIGR04293, archaeo_artF, archaeosortase family protein ArtF. Members
of this protein family, ArtF, belong to the
archaeosortase/exosortase family, in which many members
associate with specific protein C-terminal putative
protein sorting domains (exosortase A with PEP-CTERM,
archaeosortase A with PGF-CTERM, etc.). This subgroup is
observed in Thermococcus gammatolerans EJ3 and
Thermococcus sp. AM4, but the gene neighborhood is not
conserved. The cognate sequence to ArtF is unknown, but
should not be ICGP-CTERM (model TIGR04288), found also in
many Pyrococcus species that lack any archaeosortase
family member.
Length = 166
Score = 30.7 bits (69), Expect = 4.3
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 1641 ITFWLFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLF-----ALML 1695
++F + +G+ + L+ I+ L F P IR+ + WF+ LY+ F +++L
Sbjct: 68 LSFEITWQCSGMFSISLYTIVYLTF----PGIRRNLWEWFFGVSVLYLANFFRVLTSILL 123
Query: 1696 IHGLARITGPPRFWIYFIGPGVVF 1719
H F+ Y +GP ++F
Sbjct: 124 YHHFGEEVF--SFFHYILGPALMF 145
>gnl|CDD|220492 pfam09960, DUF2194, Uncharacterized protein conserved in bacteria
(DUF2194). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 573
Score = 31.6 bits (72), Expect = 4.4
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 113 DMCDNDRNGVIDKGELAEMLRSLVEMARTSFPS-----GGAATTVVKIVLRGYYSYGNSL 167
D+ D DRN EL + LRS + + + ++P G A VK +
Sbjct: 473 DVLDEDRNANKGWAELFKALRSFLYIIKKNYPWLRNMTGSEAANAVKRYFTLKPFIKYTD 532
Query: 168 DNIDLYIGGMLESHEGP 184
+ +++ + H P
Sbjct: 533 NKLEIDLKN---FHNLP 546
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 31.4 bits (71), Expect = 4.7
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 1641 ITFWLFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHGLA 1700
+ I + G+LL + L++ +++ + L L AL+L+
Sbjct: 142 LLGGGGGGILSLLGLLLALAAALLWALYTALVKRLSRLGPVTLALLLQLLLALLLLLLFF 201
Query: 1701 ----RITGPPRFWIYFIGPGVV 1718
R W+ + GV
Sbjct: 202 LSGFGAPILSRAWLLLLYLGVF 223
>gnl|CDD|99785 cd06188, NADH_quinone_reductase, Na+-translocating NADH:quinone
oxidoreductase (Na+-NQR) FAD/NADH binding domain.
(Na+-NQR) provides a means of storing redox reaction
energy via the transmembrane translocation of Na2+ ions.
The C-terminal domain resembles ferredoxin:NADP+
oxidoreductase, and has NADH and FAD binding sites.
(Na+-NQR) is distinct from H+-translocating NADH:quinone
oxidoreductases and noncoupled NADH:quinone
oxidoreductases. The NAD(P) binding domain of ferredoxin
reductase-like proteins catalyze electron transfer
between an NAD(P)-binding domain of the alpha/beta class
and a discrete (usually N-terminal) domain which vary in
orientation with respect to the NAD(P) binding domain.
The N-terminal domain of this group typically contains an
iron-sulfur cluster binding domain.
Length = 283
Score = 31.5 bits (72), Expect = 4.7
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 1812 CNFNASEDQPKIRLEGPFGGGNQDWYKFEVAVMVGGGIGVTPYASILNDLVFGTSTNR-- 1869
N + K+ GPFG E V +GGG G+ P S + L+ + R
Sbjct: 127 FNLKPGD---KVTASGPFGEFFIKDTDRE-MVFIGGGAGMAPLRSHIFHLLKTLKSKRKI 182
Query: 1870 ---YSGVSCKKVY----FLWICPSHKHFEWFIDVLRDVEKKD 1904
Y S K+++ F + +F++ VL + + +D
Sbjct: 183 SFWYGARSLKELFYQEEFEALEKEFPNFKYHP-VLSEPQPED 223
>gnl|CDD|219942 pfam08626, TRAPPC9-Trs120, Transport protein Trs120 or TRAPPC9, TRAPP
II complex subunit. This region is found at the N
terminal of Saccharomyces cerevisiae Trs120 protein.
Trs120 is a subunit of the multiprotein complex TRAPP
(transport particle protein) which functions in ER to
Golgi traffic. Trs120 is specific to the larger TRAPP
complex, TRAPP II, along with Trs65p and
Trs130p(TRAPPC10). It is suggested that Trs120p is
required for the stability of the Trs130p subunit,
suggesting that these two proteins might interact in some
way. It is likely that there is a complex function for
TRAPP II in multiple pathways.
Length = 1183
Score = 31.6 bits (71), Expect = 5.1
Identities = 36/213 (16%), Positives = 63/213 (29%), Gaps = 23/213 (10%)
Query: 1806 RNYFDPCNFNASEDQPKIRLEGPFGGGNQD--WYKFEVAVMVGGGIGVTPYASILND-LV 1862
++ F+P F ++ L+ G + F+ V IG+ Y S +
Sbjct: 56 KSPFNPQAF----PNGRLFLKFLTSGDAEPSFLEDFQPFRKVFVVIGIVDYPSDPDVEQK 111
Query: 1863 FGTSTNRYSGVSCKKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKF 1922
RY + F++ P+ + VE T
Sbjct: 112 LVVLKERYPTAIVHNL-FVFDTPTDE----------IVENIR-TAPNVFPHPSDCQSLLK 159
Query: 1923 DLRTTMLYICENHFQRL-SKSSMFTGLKAVNHFGRPD-MSSFLKFVQKKHSYVSKIGVFS 1980
+ T + I N + L S S L++ ++ L K+ S S
Sbjct: 160 AMETILCDITANLLEALESYSYKNITLRSPGSITDSAVLTKTLNNANKRLS--SFKVTLL 217
Query: 1981 CGPRPLTKSIMSACEEVNKGRKLPYFIHHFENF 2013
P + S+ S +K R L +F
Sbjct: 218 NTPLDSSLSLGSDLSSKSKKRHLGRQRKIMGDF 250
>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane].
Length = 424
Score = 31.3 bits (71), Expect = 5.4
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 1650 TGITGVLLFVIMVLIFVFAH-----PTIRKKAYNWFWLAHSLYVFLFALMLIHGLARITG 1704
TGI G+LL + ++L+ + +L L+V LF+ + IT
Sbjct: 342 TGILGLLLLLALLLVILLLFLKRTRKNALAALLGLLFLGIILFVGLFSEVES-LFFAITS 400
Query: 1705 PPRFWIYFI 1713
FW+ F+
Sbjct: 401 S--FWVLFV 407
>gnl|CDD|217631 pfam03595, C4dic_mal_tran, C4-dicarboxylate transporter/malic acid
transport protein. This family of transporters have ten
alpha helical transmembrane segments. The structure of a
bacterial homologue of SLAC1 shows it to have a trimeric
arrangement. The pore is composed of five helices with a
conserved phe residue involved in gating. One homologue,
Mae1 from the yeast Schizosaccharomyces pombe, functions
as a malate uptake transporter; another, Ssu1 from
Saccharomyces cerevisiae and other fungi including
Aspergillus fumigatus, is characterized as a sulphite
efflux pump; and TehA from Escherichia coli is identified
as a tellurite resistance protein by virtue of its
association in the tehA/tehB operon. Many homologues are
incorrectly annotated as tellurite
resistance/dicarboxylate transporter (TDT) proteins.
Length = 314
Score = 31.4 bits (72), Expect = 5.4
Identities = 32/192 (16%), Positives = 58/192 (30%), Gaps = 42/192 (21%)
Query: 1544 IFYL-FIFYVITIALFVERFIHY--SFLAEHTDLRHIMG-------------QYIPLDSH 1587
+F L +++ +AL++ RFI Y + AE +
Sbjct: 38 LFILAVALFLLLLALYLLRFIRYPKAVKAELRHPVRGSFFGTFPMALLTLINGLLLYGWA 97
Query: 1588 IQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGITFWLFQ 1647
+ + L+ + + + + LEH+ P+ WL
Sbjct: 98 PALAYVLWWIGVALHLVLAIYIVFSLFSGKRFKLEHVT--------PA--------WLLP 141
Query: 1648 TITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALML----IHGLARIT 1703
+ I + ++ Y F L LY+ L L+L H L
Sbjct: 142 VVGIIVAAVTGALLAPAGPTLEL-----GYLLFGLGLLLYLVLLPLVLYRLLFHKLPPAA 196
Query: 1704 GPPRFWIYFIGP 1715
P +I +GP
Sbjct: 197 LRPTLFI-LLGP 207
>gnl|CDD|222228 pfam13567, DUF4131, Domain of unknown function (DUF4131). This
domain is frequently found to the N-terminus of the
Competence domain, pfam03772.
Length = 173
Score = 30.4 bits (69), Expect = 5.5
Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 16/138 (11%)
Query: 1640 GITFWLFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHGL 1699
GI L + + L ++ +L + R+K L L + L + +
Sbjct: 3 GI---LLADLLSLPLPLWLLLALLALLLLLLLYRRKRRRTLLLL--LLLLLLGGLGLGLR 57
Query: 1700 ARITGPPRFWIYFIGPGVVFILDKVVSL------RTKYMA----LDILETELLPSDVIKI 1749
A G V + V S R +++ L + S + +
Sbjct: 58 AYRRAANDLSHLLDG-KEVTVEGVVASTPEVTGDRVRFVLEVERLLVGGDTKPVSGKVLV 116
Query: 1750 RFYRPPNFTYHSGQWVRL 1767
+ G +R+
Sbjct: 117 YVRKDSLPKLRPGDRIRV 134
>gnl|CDD|239573 cd03493, SQR_QFR_TM, Succinate:quinone oxidoreductase (SQR) and
Quinol:fumarate reductase (QFR) family, transmembrane
subunits; SQR catalyzes the oxidation of succinate to
fumarate coupled to the reduction of quinone to quinol,
while QFR catalyzes the reverse reaction. SQR, also
called succinate dehydrogenase or Complex II, is part of
the citric acid cycle and the aerobic respiratory chain,
while QFR is involved in anaerobic respiration with
fumarate as the terminal electron acceptor. SQRs may
reduce either high or low potential quinones while QFRs
oxidize only low potential quinols. SQR and QFR share a
common subunit arrangement, composed of a flavoprotein
catalytic subunit, an iron-sulfur protein and one or two
hydrophobic transmembrane subunits. The structural
arrangement allows efficient electron transfer between
the catalytic subunit, through iron-sulfur centers, and
the transmembrane subunit(s) containing the electron
donor/acceptor (quinol or quinone). The reversible
reduction of quinone is an essential feature of
respiration, allowing the transfer of electrons between
respiratory complexes. SQRs and QFRs can be classified
into five types (A-E) according to the number of their
hydrophobic subunits and heme groups. This classification
is consistent with the characteristics and phylogeny of
the catalytic and iron-sulfur subunits. Type E proteins,
e.g. non-classical archael SQRs, contain atypical
transmembrane subunits and are not included in this
hierarchy. The heme and quinone binding sites reside in
the transmembrane subunits. Although succinate oxidation
and fumarate reduction are carried out by separate
enzymes in most organisms, some bifunctional enzymes that
exhibit both SQR and QFR activities exist.
Length = 98
Score = 29.2 bits (66), Expect = 5.5
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 1645 LFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHS-----LYVFLFALMLIHGL 1699
+ ITG+ +LLF+ + L+ + A S LY+ L +L H L
Sbjct: 1 ILHRITGV-ALLLFLPLHLLGLLALLGGPYAFAEVVAFLSSPLGKLLYLLLLLALLYHAL 59
Query: 1700 ARI 1702
I
Sbjct: 60 NGI 62
>gnl|CDD|99816 cd06220, DHOD_e_trans_like2, FAD/NAD binding domain in the electron
transfer subunit of dihydroorotate dehydrogenase-like
proteins. Dihydroorotate dehydrogenases (DHODs) catalyze
the only redox reaction in pyrimidine de novo
biosynthesis. They catalyze the oxidation of
(S)-dihydroorotate to orotate coupled with the reduction
of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is
co-expressed with pyrK and both gene products are
required for full activity, as well as 3 cofactors: FMN,
FAD, and an [2Fe-2S] cluster.
Length = 233
Score = 31.1 bits (71), Expect = 5.7
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 24/110 (21%)
Query: 1780 FTLTSAPHENFLSCHIKAQGPWTWKLRNYFDPCNFNASE-DQPKIRLEGPFGGGNQDWYK 1838
+L+ N ++ +K G T L + E D+ IR GP+G G
Sbjct: 42 MSLSYIDGPNSIT--VKKVGEATSAL--------HDLKEGDKLGIR--GPYGNG------ 83
Query: 1839 FEV----AVMVGGGIGVTPYASILNDL-VFGTSTNRYSGVSCKKVYFLWI 1883
FE+ +++GGGIG+ P A + L T + +++ FL
Sbjct: 84 FELVGGKVLLIGGGIGIAPLAPLAERLKKAADVTVLLGARTKEELLFLDR 133
>gnl|CDD|240154 cd05027, S-100B, S-100B: S-100B domain found in proteins similar
to S100B. S100B is a calcium-binding protein belonging
to a large S100 vertebrate-specific protein family
within the EF-hand superfamily of calcium-binding
proteins. Note that the S-100 hierarchy, to which this
S-100B group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately.
S100B is most abundant in glial cells of the central
nervous system, predominately in astrocytes. S100B is
involved in signal transduction via the inhibition of
protein phoshorylation, regulation of enzyme activity
and by affecting the calcium homeostasis. Upon calcium
binding the S100B homodimer changes conformation to
expose a hydrophobic cleft, which represents the
interaction site of S100B with its more than 20 known
target proteins. These target proteins include several
cellular architecture proteins such as tubulin and
GFAP; S100B can inhibit polymerization of these
oligomeric molecules. Furthermore, S100B inhibits the
phosphorylation of multiple kinase substrates including
the Alzheimer protein tau and neuromodulin (GAP-43)
through a calcium-sensitive interaction with the
protein substrates.
Length = 88
Score = 29.1 bits (65), Expect = 6.3
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 34 KPGEKRR-RDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEF 92
+ G+K + + E E++ E + L + V + +D DGDG FQEF
Sbjct: 20 REGDKHKLKKSELKELI------NNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEF 73
Query: 93 LDTVVL 98
+ V +
Sbjct: 74 MAFVAM 79
Score = 29.1 bits (65), Expect = 6.3
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 1177 KPGEKRR-RDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEF 1235
+ G+K + + E E++ E + L + V + +D DGDG FQEF
Sbjct: 20 REGDKHKLKKSELKELI------NNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEF 73
Query: 1236 LDTVVL 1241
+ V +
Sbjct: 74 MAFVAM 79
Score = 29.1 bits (65), Expect = 6.3
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 1336 KPGEKRR-RDDETGEVVMRTSLSRAEFASALGMKSDAVFVRMMFNIVDKDGDGRISFQEF 1394
+ G+K + + E E++ E + L + V + +D DGDG FQEF
Sbjct: 20 REGDKHKLKKSELKELI------NNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEF 73
Query: 1395 LDTVVL 1400
+ V +
Sbjct: 74 MAFVAM 79
>gnl|CDD|146081 pfam03270, DUF269, Protein of unknown function, DUF269. Members of
this family may be involved in nitrogen fixation, since
they are found within nitrogen fixation operons.
Length = 122
Score = 29.5 bits (67), Expect = 6.3
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 180 SHEGPGP--LFTN--IILEQFTRLRDADRFWFENTE------NGMFTAAEVEAIRK 225
SHEG G L +++ + LRD RF FE+ E + AA VE I K
Sbjct: 63 SHEGFGRVLLIAGRLVVVSKT--LRDVHRFGFESLEKLAEEGEKLVDAA-VELIEK 115
Score = 29.5 bits (67), Expect = 6.3
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 876 SHEGPGP--LFTN--IILEQFTRLRDADRFWFENTE------NGMFTAAEVEAIRK 921
SHEG G L +++ + LRD RF FE+ E + AA VE I K
Sbjct: 63 SHEGFGRVLLIAGRLVVVSKT--LRDVHRFGFESLEKLAEEGEKLVDAA-VELIEK 115
>gnl|CDD|222078 pfam13367, PrsW-protease, Protease prsW family. This is a family of
putative peptidases, possibly belonging to the MEROPS M79
family. PrsW appears to be a member of a widespread
family of membrane proteins that includes at least one
previously known protease. PrsW appears to be responsible
for Site-1 cleavage of the RsiW anti-sigma factor, the
cognate anti-sigma factor, and it senses antimicrobial
peptides that damage the cell membrane and other agents
that cause cell envelope stress, The three acidic
residues, E75, E76 and E95 in Aflv_1074, appear to be
crucial since their mutation to alanine renders the
protein inactive. Based on predictions of the
bioinformatics programme TMHMM it is likely that these
residues are located on the extracytoplasmic face of PrsW
placing them in a position to act as a sensor for cell
envelope stress.
Length = 180
Score = 30.3 bits (69), Expect = 6.5
Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 31/130 (23%)
Query: 1593 IAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPGITFWLFQTITGI 1652
A L F+++ + ++ + G+ + + + +
Sbjct: 80 YGAAVGLGFAVLENILYLASAAGG-----------------------GLETAILRALLSV 116
Query: 1653 TGVLLF-VIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHGLAR-ITGPPRFWI 1710
G LF I A +K L L A +L+HGL + +
Sbjct: 117 PGHALFTAITGYGLGLAKFRRKKGRKGLLLLG-----LLLA-VLLHGLWNLLLSLGGGLL 170
Query: 1711 YFIGPGVVFI 1720
I P ++ +
Sbjct: 171 LIIVPLLLLL 180
>gnl|CDD|218781 pfam05857, TraX, TraX protein. This family consists of several
bacterial TraX proteins. TraX is responsible for the
amino-terminal acetylation of F-pilin subunits.
Length = 216
Score = 30.7 bits (70), Expect = 6.5
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 12/84 (14%)
Query: 1640 GITFWLF-QTITGITG-VLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIH 1697
G+ F+LF Q + + + VL N A + L+ ++
Sbjct: 138 GLAFYLFYQRPLLRAALIAVLALFVLSLNALF------FINGQLWA----LLALPLITLY 187
Query: 1698 GLARITGPPRFWIYFIGPGVVFIL 1721
+ +++ Y P + +L
Sbjct: 188 PNGKRRPRLKYFFYLFYPVHLAVL 211
>gnl|CDD|227621 COG5305, COG5305, Predicted membrane protein [Function unknown].
Length = 552
Score = 31.2 bits (71), Expect = 6.8
Identities = 39/223 (17%), Positives = 59/223 (26%), Gaps = 60/223 (26%)
Query: 1525 WFQLKLVPITTFLEENRQNIFYLFIFYVITIALFVERFIHYSFLAEHTDLRH-IMGQYIP 1583
W L+ I + L Y F VI ++V A + + + +
Sbjct: 200 WLIYALLLILSLL------THYFFALTVIAHGVYV------LLWASLKNRQSLFLIWW-- 245
Query: 1584 LDSHIQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYKPG--- 1640
AA F + N + V L +T + P
Sbjct: 246 ------LLATAAGLLAFLPWLLVY--FANSFRVGIPDL-----ITLDGIVGQLINPIYPL 292
Query: 1641 ITFWLFQTITGI-TGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHG- 1698
I WL + +A LY A++LI G
Sbjct: 293 IAAWLLAFSLLFFDLLHGLDFP-----------------INGVARFLYPIWLAIILILGA 335
Query: 1699 ---LARITGPPRFWIYFIG-----PGVVFILDKVVSLRTKYMA 1733
L R T R + FI P + IL +VS+
Sbjct: 336 LYTLCRAT--ERKILLFILTLIIAPALPLILSDLVSVFITRNP 376
>gnl|CDD|217309 pfam02990, EMP70, Endomembrane protein 70.
Length = 518
Score = 31.1 bits (71), Expect = 6.9
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 14/65 (21%)
Query: 1642 TFWLFQTITGITGVLLFVIMVLIFVFAHPTI-------RKKAYNWFWLAH------SLYV 1688
+ WL + + G L V ++L+ V + TI + Y W+W + ++YV
Sbjct: 442 SLWLHKIYY-MFGFLFLVFIILVVVCSEVTIVLTYFQLCAEDYRWWWRSFLTSGSTAVYV 500
Query: 1689 FLFAL 1693
FL+++
Sbjct: 501 FLYSI 505
>gnl|CDD|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain.
Xanthine dehydrogenases, that also bind FAD/NAD, have
essentially no similarity.
Length = 106
Score = 29.2 bits (66), Expect = 7.0
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 22/103 (21%)
Query: 1844 MVGGGIGVTPYASILNDLVFGTSTNRYSGVSCKKVYFLWICPSHKHF---EWFIDVLRDV 1900
M+ GG G+ P S+L L+ +VY ++ + E ++ +
Sbjct: 1 MIAGGTGIAPLYSVLKALLEDEDG--------TEVYLVYGNRTEDDLLLREELEELAKKY 52
Query: 1901 EKKDVTNVLEI-------HIFITQFFHK----FDLRTTMLYIC 1932
V V ++T + DL T +Y+C
Sbjct: 53 PNLKVVAVSRTDDGWYGRKGYVTDALLEEHLSEDLGDTDVYVC 95
>gnl|CDD|222964 PHA03042, PHA03042, CD47-like protein; Provisional.
Length = 286
Score = 30.8 bits (70), Expect = 7.3
Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 57/228 (25%)
Query: 1527 QLKLVPITTFLEENRQNIFYLFIFYVI-------TIAL---FVERFIHYSFLAEHTDLRH 1576
+L+ V I F E I L Y+I T+ +++ I+ ++ L
Sbjct: 101 ELQYV-IKWFTSEEINVILSLLSIYIIILWGTIITLTFKINKLKKIIYLYAISIWITLIM 159
Query: 1577 IMGQY-IPLDSHIQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPS 1635
++GQY I L+++ F KI + S+ ++ I Y + +++ + L
Sbjct: 160 LVGQYMIGLNTNYIFVKIQGIILIQVSIFSSIFLQIILY----KKIKNSYLL-------- 207
Query: 1636 DYKPGITFWLFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALML 1695
I + + I+ I + F++++L F+ + Y Y+F++ L+
Sbjct: 208 -----IIVIILKVISYI---ISFIVIILSFIGCY----NSIYG--------YLFIYKLLF 247
Query: 1696 IHGLARITGPPRFWIYFIGPGVVFILDKVVSLRTKYMALDILETELLP 1743
I+ L + I FI P + KY L I+E EL
Sbjct: 248 INILELSS----LVILFILP---------LGTNIKYKKLHIIEDELFL 282
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 31.0 bits (70), Expect = 7.3
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 1270 ELAEMLRSLVEMARTTSLTDSQVTELIDGMFQSPRELMLAKA 1311
E+ ++ SL+E AR S D++V++L GM R L LA+A
Sbjct: 148 EIEAVIPSLLEFARLESKADARVSDLSGGM---KRRLTLARA 186
>gnl|CDD|234075 TIGR02968, succ_dehyd_anc, succinate dehydrogenase, hydrophobic
membrane anchor protein. In E. coli and many other
bacteria, two small, hydrophobic, mutually homologous
subunits of succinate dehydrogenase, a TCA cycle enzyme,
are SdhC and SdhD. This family is the SdhD, the
hydrophobic membrane anchor protein. SdhC is
apocytochrome b558, which also plays a role in anchoring
the complex [Energy metabolism, TCA cycle].
Length = 105
Score = 29.1 bits (66), Expect = 7.6
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 1640 GITFWLFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWF---WLAHSLYVFLFALMLI 1696
G+ WL Q +T + L + ++ + + F W+ + L AL L
Sbjct: 4 GLRDWLLQRVTAVVLALYTIFLIGFLLALPGLTYEAWRALFAHPWMKIFTLLALLAL-LY 62
Query: 1697 HG 1698
H
Sbjct: 63 HA 64
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 30.5 bits (69), Expect = 7.8
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 1269 GELAEMLRSLVEMARTTSLTDSQVTELIDGMFQSPRELMLAKA 1311
++ L+E A+ + D++V EL GM R L LA+A
Sbjct: 113 AAARALVPPLLEFAKLENKADAKVGELSGGM---KRRLTLARA 152
>gnl|CDD|219797 pfam08326, ACC_central, Acetyl-CoA carboxylase, central region.
The region featured in this family is found in various
eukaryotic acetyl-CoA carboxylases, N-terminal to the
catalytic domain (pfam01039). This enzyme (EC:6.4.1.2)
is involved in the synthesis of long-chain fatty acids,
as it catalyzes the rate-limiting step in this process.
Length = 707
Score = 31.1 bits (71), Expect = 7.8
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 27/107 (25%)
Query: 42 DDETGEVVMRTSLSRAEFAS---------ALGMKSDAVFVRM---MFNIVDKDGDGRIS- 88
++E +V R A F + L + + R+ + ++ ++ G S
Sbjct: 91 EEELESLVERYESRIASFPAKQLRKLIEKYLALDPRELLERLVAPLVSLAERYEGGLKSH 150
Query: 89 --------FQEFLDTVVLFSRGHTED---KLRIIFDMCDNDRNGVID 124
+E+L LFS G ED KLR D +D + V+D
Sbjct: 151 EHNVVKSLLEEYLSVEELFSNGREEDVILKLR---DENKDDLSKVVD 194
Score = 31.1 bits (71), Expect = 7.8
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 27/107 (25%)
Query: 1185 DDETGEVVMRTSLSRAEFAS---------ALGMKSDAVFVRM---MFNIVDKDGDGRIS- 1231
++E +V R A F + L + + R+ + ++ ++ G S
Sbjct: 91 EEELESLVERYESRIASFPAKQLRKLIEKYLALDPRELLERLVAPLVSLAERYEGGLKSH 150
Query: 1232 --------FQEFLDTVVLFSRGHTED---KLRIIFDMCDNDRNGVID 1267
+E+L LFS G ED KLR D +D + V+D
Sbjct: 151 EHNVVKSLLEEYLSVEELFSNGREEDVILKLR---DENKDDLSKVVD 194
Score = 31.1 bits (71), Expect = 7.8
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 27/107 (25%)
Query: 1344 DDETGEVVMRTSLSRAEFAS---------ALGMKSDAVFVRM---MFNIVDKDGDGRIS- 1390
++E +V R A F + L + + R+ + ++ ++ G S
Sbjct: 91 EEELESLVERYESRIASFPAKQLRKLIEKYLALDPRELLERLVAPLVSLAERYEGGLKSH 150
Query: 1391 --------FQEFLDTVVLFSRGHTED---KLRIIFDMCDNDRNGVID 1426
+E+L LFS G ED KLR D +D + V+D
Sbjct: 151 EHNVVKSLLEEYLSVEELFSNGREEDVILKLR---DENKDDLSKVVD 194
>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane
protein. Models TIGR03110, TIGR03111, and TIGR03112
describe a three-gene system found in several
Gram-positive bacteria, where TIGR03110 (XrtG) is
distantly related to a putative transpeptidase,
exosortase (TIGR02602). This model describes a small
clade that correlates by both gene clustering and
phyletic pattern, although imperfectly, to the three gene
system. Both this narrow clade, and the larger set of
full-length homologous integral membrane proteins, have
an especially well-conserved region near the C-terminus
with an invariant tyrosine. The function is unknown.
Length = 483
Score = 31.1 bits (71), Expect = 7.9
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 1641 ITFWLFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWF-----WLAHSLYVFLFALML 1695
+ W T + ++L + ++LI ++ + KK Y + +++ L L L
Sbjct: 22 LNLWGISTTLIVLLLILIIFLILIIIYFWKKV-KKRYRFLMRHKGVTIIVIFILLLILQL 80
Query: 1696 IHGLARITGPPRF 1708
I A + +
Sbjct: 81 ILVTA-LHPLIGW 92
>gnl|CDD|224213 COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy
production and conversion].
Length = 346
Score = 30.7 bits (70), Expect = 8.0
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 1645 LFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLAHSLYVFLFALMLIHGLAR-IT 1703
L + +T V + V + + ++ WL + + +L L R
Sbjct: 202 LARIAALLTLVGFLLFGVWVTPGLDGFAASRWFSLPWLFLFSLLPVVGALLAVLLKRKGR 261
Query: 1704 GPPRFWIYFIGPGVVFIL 1721
G F+ ++F+L
Sbjct: 262 GKEGLA--FVLTSLLFLL 277
>gnl|CDD|235877 PRK06850, PRK06850, hypothetical protein; Provisional.
Length = 507
Score = 30.7 bits (70), Expect = 8.6
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 785 DIRDKLFGPNE------FSRRDLGALNIMRGRDNGIADYNTVRSNYNLKKLKSW 832
D R++L P F RR+ G + + +D G + Y LK + W
Sbjct: 290 DFRNELAIPENDREYRDFRRRN-GKVQLFERKDGGDISIEPIPGPYTLKYREEW 342
>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family. This family
includes a range of acyltransferase enzymes. This domain
is found in many as yet uncharacterized C. elegans
proteins and it is approximately 300 amino acids long.
Length = 326
Score = 30.6 bits (69), Expect = 9.5
Identities = 23/204 (11%), Positives = 57/204 (27%), Gaps = 36/204 (17%)
Query: 1530 LVPITTFLEENRQNIFYLFIFYVITIALFVERFIHYSFLAEHTDLRHI-----------M 1578
L+P+ L + + L + ++ + + I L I +
Sbjct: 137 LLPLLLRLLRKLKKLLLLLLLALLLLLSLLYILILLVGLPPTVLNLLIGLLPFFLLGALL 196
Query: 1579 GQYIPLDSHIQFHKIAACTALFFSLIHTVGHIINFYHVSTQPLEHLHCLTAEVHFPSDYK 1638
+Y + + L + + F V P + +
Sbjct: 197 ARYRKRIRSKRLLLLIVILLALALLALILLLLFLFGLVYLAPELYGYFSLL--------- 247
Query: 1639 PGITFWLFQTITGITGVLLFVIMVLIFVFAHPTIRKKAYNWFWLA-HSLYVFLFALMLIH 1697
+LL V+++L+ +R +L +SL ++L ++
Sbjct: 248 ---------------LLLLGVLLLLLLALLLANLRSLKRLLKYLGKYSLGIYLIHPPILL 292
Query: 1698 GLARITGPPRFWIYFIGPGVVFIL 1721
L ++ + + +L
Sbjct: 293 LLTKLLLLLPPLGPILLFLLALVL 316
>gnl|CDD|216972 pfam02322, Cyto_ox_2, Cytochrome oxidase subunit II. This Family
consists of cytochrome bd type terminal oxidases that
catalyzes Quinol dependent, Na+ independent oxygen
uptake. Members of this family are integral membrane
proteins andi contain a protohaem IX centre B558. One
member of the family,cydB from Klebsiella pneumoniae, is
implicated in having an important role in micro-aerobic
nitrogen fixation in the enteric bacterium Klebsiella
pneumoniae.
Length = 327
Score = 30.5 bits (70), Expect = 9.8
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 11/111 (9%)
Query: 1634 PSDYKPGITFWL--FQTITGITGVLLFVIMVLIFVF--AHPTIRKKAYNWFWLAHSLYVF 1689
+Y G L F + G+ V L+ ++ ++ ++++A + +
Sbjct: 144 AGNYAGGFFDLLNPFALLGGLAVVALYALLGATWLILKTEGELQERARRLAKKLGLVLLV 203
Query: 1690 LFALMLI-------HGLARITGPPRFWIYFIGPGVVFILDKVVSLRTKYMA 1733
LFAL+ + A P I P + +L ++ +
Sbjct: 204 LFALVSVWVPLAAPALFANWFSSPWLLILPALPVLAALLAVLLLRLRREGL 254
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins. Escherichia
coli Wzx and related proteins from other gram-negative
bacteria are thought to act as flippases, assisting in
the membrane translocation of lipopolysaccharides
including those containing O-antigens. Proteins from the
MATE family are involved in exporting metabolites across
the cell membrane and are often responsible for multidrug
resistance (MDR).
Length = 402
Score = 30.6 bits (70), Expect = 9.9
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 17/90 (18%)
Query: 1645 LFQTITGITGVLLFVIMVLIFVFAHPTIR---KKAYN----------WFWLAHSLYVFLF 1691
L + ++ I + +F+FA P I + Y W +L L
Sbjct: 284 LLKKSFKYLFLISLPIAIGLFLFAEPIITLLFGEEYLPAALVLQILAWGFLFIFLNGIFG 343
Query: 1692 ALMLIHGLARITGPPRFWIYFIGPGVVFIL 1721
+++ G ++T I IG + IL
Sbjct: 344 SILQAIGKQKLT----LKILLIGALLNVIL 369
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.422
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 105,660,217
Number of extensions: 10856350
Number of successful extensions: 10790
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10590
Number of HSP's successfully gapped: 279
Length of query: 2014
Length of database: 10,937,602
Length adjustment: 112
Effective length of query: 1902
Effective length of database: 5,969,954
Effective search space: 11354852508
Effective search space used: 11354852508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 67 (29.5 bits)