BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5585
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 66/108 (61%)
Query: 1 MNQVDRGNFCSHNPYLDAPQSIGYKVTISAPXXXXXXXXXXXXXXXNGKRALDVGSGSGY 60
M DR ++ NPY+D+PQSIG++ TISAP G +ALDVGSGSG
Sbjct: 31 MLATDRSHYAKCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGI 90
Query: 61 LTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108
LT C A M+G GK +GIDHI +LV+ SV NV K LL SGRV LV
Sbjct: 91 LTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 138
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 1 MNQVDRGNFCSHNPYLDAPQSIGYKVTISAPXXXXXXXXXXXXXXXNGKRALDVGSGSGY 60
M + DR ++ NPY+DAPQ IG VTISAP G R LDVGSGSGY
Sbjct: 38 MKETDRKHYSPRNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGY 97
Query: 61 LTTCMALMMGEHG-----KAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLVS 109
LT C + G + VGI+H +LV S N+ +++LDSG++L+V
Sbjct: 98 LTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 151
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 1 MNQVDRGNFCSHNPYLDAPQSIGYKVTISAPXXXXXXXXXXXXXXXNGKRALDVGSGSGY 60
M QVDRG + PY+D P I + VTISAP G RA+DVGSGSGY
Sbjct: 34 MLQVDRGKYIKEIPYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSGSGY 93
Query: 61 LTTCMALMM----GEHGKAVGIDHIPDLVNSSVKNVEKSHKALL 100
LT CMA+ M ++ +G++ + DLVN S++N+++ LL
Sbjct: 94 LTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELL 137
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 3 QVDRGNFCSHN----PYLDAPQSIGYKVTISAPXXXXXXXXXXXXXXXNGKRALDVGSGS 58
+V R F + Y+D P IGY TISA G + L++G+G
Sbjct: 31 KVPREEFLPEHLKEYAYVDTPLEIGYGQTISA--IHMVGMMCELLDLKPGMKVLEIGTGC 88
Query: 59 GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
GY A ++GE G V I+ IP+L + + + K
Sbjct: 89 GYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK 124
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
G LDVG+G+G+ ++ M+GE GK ID ++VN + + V K
Sbjct: 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK 84
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
G R L++G G+GY M+ ++GE G V +++ + + +NVE+
Sbjct: 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER 122
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93
G LD+G G+G + ++GEHGK +G+D + + + + K VE
Sbjct: 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVE 129
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 32.0 bits (71), Expect = 0.080, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 16/66 (24%)
Query: 48 GKRALDVGSGSGYLT------------TCMALMMGEHGKAV----GIDHIPDLVNSSVKN 91
GK LDVG+GSG L A M +H +A+ +DHI +++ SV++
Sbjct: 64 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVED 123
Query: 92 VEKSHK 97
+ K
Sbjct: 124 ISLPEK 129
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92
G R L+ G+GSG LT +A +GE G + P + + +NV
Sbjct: 97 GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNV 141
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLL 107
G R L+ G+GSG LT + +G G+ + + D + +NV + D+ R+++
Sbjct: 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV 159
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90
KR +++G+ +GY + C A + E GK + D + N + K
Sbjct: 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARK 103
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 15 YLDAPQSIGYKVTISAPXXXXXXXXXXXXXXXNGKRALDVGSGSGYLTTCMALMMGEHGK 74
++D P I T+SAP G L+VG+GSG+ ++ ++
Sbjct: 61 HIDEPLPIPAGQTVSAPHMVAIMLEIANLK--PGMNILEVGTGSGWNAALISEIV--KTD 116
Query: 75 AVGIDHIPDLVNSSVKNVEKS 95
I+ IP+LV + +N+E++
Sbjct: 117 VYTIERIPELVEFAKRNLERA 137
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 53 DVGSGSGYLTTCMALMMGEH--GKAVGIDHIPDLVNSSVKNVEK 94
D+G G+G T +++ +H GK GID P + KN EK
Sbjct: 58 DLGCGTGGQT----MILAQHVPGKITGIDFFPGFIERFNKNAEK 97
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 53 DVGSGSGYLTTCMALMMGEH--GKAVGIDHIPDLVNSSVKNVEK 94
D+G G+G T +++ +H GK GID P + KN EK
Sbjct: 53 DLGCGTGGQT----MILAQHVPGKITGIDFFPGFIERFNKNAEK 92
>pdb|3BKX|A Chain A, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
Length = 275
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
G++ L++G G G L+ +A +G G GID
Sbjct: 44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95
G + LD+G+GSG L A +G GKA+G+D P ++ + N +++
Sbjct: 121 GDKVLDLGTGSGVLAIA-AEKLG--GKALGVDIDPMVLPQAEANAKRN 165
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95
G + LD+G+GSG L A +G GKA+G+D P ++ + N +++
Sbjct: 121 GDKVLDLGTGSGVLAIA-AEKLG--GKALGVDIDPMVLPQAEANAKRN 165
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93
G+ LD+G G+LT +A G + VG+D L++S+ +N+
Sbjct: 46 RGRDVLDLGCNVGHLTLSIACKWGP-SRXVGLDIDSRLIHSARQNIR 91
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95
K+ L++G GY MAL + G+ + D P+ + K +K+
Sbjct: 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA 120
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
GKR D+G G+G T L++ +H + G+D
Sbjct: 34 GKRIADIGCGTGTAT----LLLADHYEVTGVD 61
>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing
Protein
Length = 227
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
GK L +G SG + ++ ++G GK GI+ P ++ V VE+
Sbjct: 74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR 122
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
G R +D G GSG + +A +G GK + + + N+ K
Sbjct: 112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 159
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 49 KRALDVGSGSGYLTTCMALMMGEHGKAVGID--HIPDLVNSSVKNVEKSHKALLDSGRV 105
K LDVGSG+G L CM K +GI+ I D VK + H + G+V
Sbjct: 72 KVVLDVGSGTGIL--CMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV 128
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 49 KRALDVGSGSGYLTTCMALMMGEHGKAVGID--HIPDLVNSSVKNVEKSHKALLDSGRV 105
K LDVGSG+G L CM K +GI+ I D VK + H + G+V
Sbjct: 59 KVVLDVGSGTGIL--CMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV 115
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 49 KRALDVGSGSGYLTTCMALMMGEHGKAVGID--HIPDLVNSSVKNVEKSHKALLDSGRV 105
K LDVGSG+G L CM K +GI+ I D VK + H + G+V
Sbjct: 62 KVVLDVGSGTGIL--CMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV 118
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 49 KRALDVGSGSGYLTTCMALMMGEHGKAVGID--HIPDLVNSSVKNVEKSHKALLDSGRV 105
K LDVGSG+G L CM K +GI+ I D VK + H + G+V
Sbjct: 68 KVVLDVGSGTGIL--CMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV 124
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDH 80
N K+ ++VG +GY AL + + GK ID
Sbjct: 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDF 103
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91
G+ +D G+G+G L L+ E A ID PD + ++ +N
Sbjct: 52 GRSVIDAGTGNGILACGSYLLGAESVTAFDID--PDAIETAKRN 93
>pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From
Hyperthermophilic Archaeon Pyrococcus Furiosus
(Pfu-65527)
Length = 227
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
GK L +G SG + ++ ++G GK GI+ P ++ V VE+
Sbjct: 74 GKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERR 122
>pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|D Chain D, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|3NMU|F Chain F, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|J Chain J, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVK|I Chain I, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|J Chain J, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVM|B Chain B, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 234
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
GK L +G SG + ++ ++G GK GI+ P ++ V VE+
Sbjct: 81 GKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERR 129
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
N K +++G +GY AL + E GK + +D
Sbjct: 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMD 111
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLL 107
G +D G+G T +A ++GE+G+ G D+ + ++ N K L RV L
Sbjct: 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGF----DIQDKAIANTTKKLTDLNLIDRVTL 78
Query: 108 V 108
+
Sbjct: 79 I 79
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 47 NGKRALDVGSGSGYLTTCMAL 67
+G R +DVG+GSG + +AL
Sbjct: 30 SGTRVIDVGTGSGCIAVSIAL 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,816,925
Number of Sequences: 62578
Number of extensions: 83889
Number of successful extensions: 202
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 40
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)