Query psy5585
Match_columns 110
No_of_seqs 109 out of 1476
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 21:20:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01135 PCMT: Protein-L-isoas 99.8 2.6E-19 5.6E-24 117.0 7.5 97 1-99 24-124 (209)
2 PRK13942 protein-L-isoaspartat 99.8 1.4E-18 3.1E-23 113.9 9.2 95 1-97 28-126 (212)
3 COG2518 Pcm Protein-L-isoaspar 99.8 1.8E-18 3.9E-23 112.0 8.1 95 1-100 24-122 (209)
4 TIGR00080 pimt protein-L-isoas 99.8 4.6E-18 1E-22 111.6 9.3 96 1-98 29-128 (215)
5 PRK13944 protein-L-isoaspartat 99.8 6E-18 1.3E-22 110.4 8.8 95 1-97 24-122 (205)
6 PRK00312 pcm protein-L-isoaspa 99.6 2.3E-15 5E-20 98.5 8.5 93 1-98 30-126 (212)
7 PRK13943 protein-L-isoaspartat 99.6 2.9E-15 6.3E-20 103.5 9.2 96 1-98 27-131 (322)
8 KOG1661|consensus 99.6 4E-15 8.8E-20 96.0 7.7 107 1-107 32-148 (237)
9 COG2242 CobL Precorrin-6B meth 99.4 9.4E-13 2E-17 84.0 8.3 70 28-100 17-86 (187)
10 PF12847 Methyltransf_18: Meth 99.4 3.3E-12 7.1E-17 75.4 8.4 47 47-94 1-47 (112)
11 PF13847 Methyltransf_31: Meth 99.4 4.1E-12 8.9E-17 79.2 7.6 53 46-98 2-54 (152)
12 PF06325 PrmA: Ribosomal prote 99.3 7E-12 1.5E-16 85.8 8.6 67 31-99 145-211 (295)
13 COG2264 PrmA Ribosomal protein 99.3 8.6E-12 1.9E-16 85.1 8.2 67 31-99 146-212 (300)
14 TIGR03533 L3_gln_methyl protei 99.3 2.5E-11 5.5E-16 82.8 9.5 93 4-97 76-170 (284)
15 COG2226 UbiE Methylase involve 99.3 9.1E-12 2E-16 82.8 7.1 51 46-97 50-100 (238)
16 PF01209 Ubie_methyltran: ubiE 99.3 1E-11 2.2E-16 82.6 6.7 52 45-96 45-96 (233)
17 COG2890 HemK Methylase of poly 99.3 2.3E-11 5E-16 82.8 8.5 92 4-97 67-159 (280)
18 PRK08287 cobalt-precorrin-6Y C 99.3 2.8E-11 6.2E-16 77.8 8.4 67 28-97 14-80 (187)
19 PRK07402 precorrin-6B methylas 99.3 2.7E-11 5.8E-16 78.5 8.0 67 28-97 23-89 (196)
20 TIGR02469 CbiT precorrin-6Y C5 99.3 5.3E-11 1.2E-15 71.1 8.1 63 32-97 6-68 (124)
21 KOG2904|consensus 99.3 7.6E-11 1.7E-15 79.2 9.4 102 2-108 99-204 (328)
22 PRK00107 gidB 16S rRNA methylt 99.3 4.4E-11 9.5E-16 77.2 7.9 53 45-98 43-95 (187)
23 PRK00377 cbiT cobalt-precorrin 99.2 6E-11 1.3E-15 77.0 8.2 67 28-96 23-89 (198)
24 PRK00274 ksgA 16S ribosomal RN 99.2 5.6E-11 1.2E-15 80.7 8.0 72 27-103 24-95 (272)
25 TIGR02752 MenG_heptapren 2-hep 99.2 7.3E-11 1.6E-15 78.0 8.3 59 37-97 37-95 (231)
26 PRK11805 N5-glutamine S-adenos 99.2 1E-10 2.2E-15 80.7 9.1 93 4-97 88-182 (307)
27 PRK14966 unknown domain/N5-glu 99.2 8.4E-11 1.8E-15 83.6 8.7 91 4-96 209-299 (423)
28 PF05175 MTS: Methyltransferas 99.2 1.1E-10 2.3E-15 74.2 8.1 61 35-98 21-81 (170)
29 TIGR00138 gidB 16S rRNA methyl 99.2 1.3E-10 2.9E-15 74.6 8.5 51 47-98 42-92 (181)
30 PLN02233 ubiquinone biosynthes 99.2 1E-10 2.2E-15 79.0 8.2 49 45-93 71-119 (261)
31 COG2263 Predicted RNA methylas 99.2 3.7E-10 7.9E-15 72.3 9.9 70 23-94 20-90 (198)
32 PRK15451 tRNA cmo(5)U34 methyl 99.2 2E-10 4.4E-15 76.9 9.1 59 38-96 47-106 (247)
33 TIGR03704 PrmC_rel_meth putati 99.2 1.3E-10 2.7E-15 78.1 7.9 96 4-101 41-139 (251)
34 TIGR00536 hemK_fam HemK family 99.2 1.8E-10 3.9E-15 78.6 8.7 89 8-97 73-163 (284)
35 COG2230 Cfa Cyclopropane fatty 99.2 1.9E-10 4.2E-15 78.0 7.6 60 35-98 62-121 (283)
36 TIGR00477 tehB tellurite resis 99.2 2E-10 4.4E-15 74.5 7.4 59 35-98 20-78 (195)
37 PRK11207 tellurite resistance 99.1 1.8E-10 3.8E-15 74.8 7.0 57 37-98 22-78 (197)
38 PRK01544 bifunctional N5-gluta 99.1 3.2E-10 7E-15 82.8 9.0 93 4-97 70-187 (506)
39 PRK00517 prmA ribosomal protei 99.1 3.1E-10 6.8E-15 76.1 8.1 63 33-97 105-167 (250)
40 PF08704 GCD14: tRNA methyltra 99.1 5.1E-10 1.1E-14 74.9 8.4 74 23-98 18-91 (247)
41 TIGR00406 prmA ribosomal prote 99.1 5.1E-10 1.1E-14 76.6 8.5 64 33-98 145-208 (288)
42 TIGR00740 methyltransferase, p 99.1 7.5E-10 1.6E-14 73.7 9.1 51 45-95 51-102 (239)
43 PF13649 Methyltransf_25: Meth 99.1 3.2E-10 7E-15 66.0 6.2 45 51-95 1-47 (101)
44 PRK14896 ksgA 16S ribosomal RN 99.1 3.6E-10 7.7E-15 76.2 7.2 73 26-103 10-83 (258)
45 PRK00121 trmB tRNA (guanine-N( 99.1 5.9E-10 1.3E-14 72.7 7.5 51 46-97 39-89 (202)
46 PLN02781 Probable caffeoyl-CoA 99.1 1.1E-09 2.4E-14 72.9 8.8 63 35-98 57-119 (234)
47 PRK15001 SAM-dependent 23S rib 99.1 5.5E-10 1.2E-14 78.9 7.6 49 48-97 229-277 (378)
48 TIGR03534 RF_mod_PrmC protein- 99.1 7.6E-10 1.6E-14 73.8 7.9 50 47-97 87-136 (251)
49 PTZ00338 dimethyladenosine tra 99.1 9.9E-10 2.1E-14 75.4 8.3 64 27-95 18-81 (294)
50 PF01596 Methyltransf_3: O-met 99.1 1.7E-09 3.6E-14 70.8 8.9 65 32-97 31-95 (205)
51 COG4123 Predicted O-methyltran 99.1 8E-10 1.7E-14 73.8 7.5 52 45-97 42-93 (248)
52 PRK05785 hypothetical protein; 99.1 8.5E-10 1.8E-14 73.1 7.6 53 37-91 41-93 (226)
53 smart00650 rADc Ribosomal RNA 99.1 5.1E-10 1.1E-14 71.0 6.2 65 35-104 3-68 (169)
54 COG2519 GCD14 tRNA(1-methylade 99.1 9.8E-10 2.1E-14 73.2 7.6 74 24-99 73-146 (256)
55 TIGR03587 Pse_Me-ase pseudamin 99.1 9.4E-10 2E-14 71.9 7.5 48 45-93 41-88 (204)
56 PRK13168 rumA 23S rRNA m(5)U19 99.0 1.1E-09 2.4E-14 78.9 8.1 51 45-98 295-345 (443)
57 TIGR00755 ksgA dimethyladenosi 99.0 9.1E-10 2E-14 74.0 7.1 62 27-93 11-72 (253)
58 TIGR00091 tRNA (guanine-N(7)-) 99.0 8.8E-10 1.9E-14 71.4 6.7 52 46-98 15-66 (194)
59 TIGR02021 BchM-ChlM magnesium 99.0 1.6E-09 3.6E-14 71.2 8.1 48 46-96 54-101 (219)
60 PRK04266 fibrillarin; Provisio 99.0 2.5E-09 5.5E-14 70.9 8.9 63 31-94 55-118 (226)
61 PRK14103 trans-aconitate 2-met 99.0 1.1E-09 2.4E-14 73.5 6.9 46 45-91 27-72 (255)
62 PLN02244 tocopherol O-methyltr 99.0 1.4E-09 3E-14 76.0 7.6 49 46-96 117-165 (340)
63 PF03848 TehB: Tellurite resis 99.0 1E-09 2.2E-14 70.9 6.2 57 37-98 22-78 (192)
64 PRK01683 trans-aconitate 2-met 99.0 1.2E-09 2.7E-14 73.3 6.8 48 45-93 29-76 (258)
65 PF02353 CMAS: Mycolic acid cy 99.0 7.7E-10 1.7E-14 75.2 5.8 52 45-98 60-111 (273)
66 PLN02585 magnesium protoporphy 99.0 3.5E-09 7.6E-14 73.3 9.1 59 34-95 130-189 (315)
67 PRK11036 putative S-adenosyl-L 99.0 2.4E-09 5.3E-14 71.9 8.0 48 46-96 43-90 (255)
68 PRK03522 rumB 23S rRNA methylu 99.0 2.4E-09 5.1E-14 74.1 8.0 49 47-98 173-221 (315)
69 PRK11873 arsM arsenite S-adeno 99.0 2.2E-09 4.7E-14 72.7 7.5 53 45-97 75-127 (272)
70 PRK12335 tellurite resistance 99.0 2.1E-09 4.5E-14 73.5 7.4 49 46-97 119-167 (287)
71 COG2813 RsmC 16S RNA G1207 met 99.0 2.2E-09 4.7E-14 73.3 7.2 52 47-99 158-209 (300)
72 PLN02476 O-methyltransferase 99.0 8.9E-09 1.9E-13 70.0 10.0 54 45-98 116-169 (278)
73 PRK06202 hypothetical protein; 99.0 1.2E-09 2.6E-14 72.5 5.6 52 46-97 59-113 (232)
74 COG2227 UbiG 2-polyprenyl-3-me 99.0 1.1E-09 2.4E-14 72.4 5.3 50 46-98 58-107 (243)
75 PRK09489 rsmC 16S ribosomal RN 99.0 3.4E-09 7.3E-14 74.1 8.0 50 47-97 196-245 (342)
76 PRK09328 N5-glutamine S-adenos 99.0 3.3E-09 7.2E-14 71.7 7.7 47 46-93 107-153 (275)
77 TIGR00446 nop2p NOL1/NOP2/sun 99.0 4.9E-09 1.1E-13 70.9 8.3 55 45-99 69-123 (264)
78 PRK11705 cyclopropane fatty ac 99.0 2.8E-09 6E-14 75.6 7.3 48 45-94 165-212 (383)
79 PF13659 Methyltransf_26: Meth 99.0 4.4E-09 9.6E-14 62.4 7.1 48 48-97 1-48 (117)
80 TIGR00479 rumA 23S rRNA (uraci 98.9 4.4E-09 9.6E-14 75.5 8.0 51 45-98 290-340 (431)
81 TIGR03438 probable methyltrans 98.9 6.5E-09 1.4E-13 71.5 8.4 58 37-94 53-110 (301)
82 COG0030 KsgA Dimethyladenosine 98.9 3.1E-09 6.8E-14 71.4 6.6 76 26-106 11-87 (259)
83 PF07021 MetW: Methionine bios 98.9 5.1E-09 1.1E-13 67.4 7.3 52 44-101 10-61 (193)
84 PRK10909 rsmD 16S rRNA m(2)G96 98.9 2.4E-08 5.2E-13 65.1 10.6 64 32-98 39-102 (199)
85 TIGR00537 hemK_rel_arch HemK-r 98.9 5.6E-09 1.2E-13 66.7 7.5 56 37-97 11-66 (179)
86 KOG1541|consensus 98.9 3.4E-09 7.4E-14 69.5 6.4 57 29-90 32-90 (270)
87 PRK14902 16S rRNA methyltransf 98.9 6.4E-09 1.4E-13 75.0 8.5 54 45-98 248-301 (444)
88 TIGR02143 trmA_only tRNA (urac 98.9 7.7E-09 1.7E-13 72.6 8.5 62 34-98 183-245 (353)
89 PRK07580 Mg-protoporphyrin IX 98.9 8.2E-09 1.8E-13 68.0 8.1 60 35-97 50-110 (230)
90 PRK14904 16S rRNA methyltransf 98.9 7.4E-09 1.6E-13 74.7 8.5 54 45-98 248-301 (445)
91 PRK08317 hypothetical protein; 98.9 7.9E-09 1.7E-13 68.0 7.8 55 35-91 9-63 (241)
92 COG4106 Tam Trans-aconitate me 98.9 2.8E-09 6.2E-14 69.7 5.2 51 45-96 28-78 (257)
93 PLN02672 methionine S-methyltr 98.9 1.3E-08 2.8E-13 79.5 9.7 82 14-97 83-167 (1082)
94 PRK00050 16S rRNA m(4)C1402 me 98.9 8.6E-09 1.9E-13 70.7 7.8 61 32-94 6-66 (296)
95 PRK14901 16S rRNA methyltransf 98.9 9.8E-09 2.1E-13 73.9 8.4 55 45-99 250-304 (434)
96 PRK10258 biotin biosynthesis p 98.9 4.4E-09 9.6E-14 70.4 6.2 44 47-93 42-85 (251)
97 PRK14903 16S rRNA methyltransf 98.9 1.2E-08 2.5E-13 73.5 8.7 54 45-98 235-288 (431)
98 KOG1270|consensus 98.9 2.1E-09 4.6E-14 71.9 4.4 42 48-92 90-131 (282)
99 COG4122 Predicted O-methyltran 98.9 1.9E-08 4.2E-13 66.2 8.8 66 32-99 46-111 (219)
100 PRK05031 tRNA (uracil-5-)-meth 98.9 1.3E-08 2.8E-13 71.8 8.4 64 32-98 190-254 (362)
101 TIGR02085 meth_trns_rumB 23S r 98.9 8E-09 1.7E-13 73.0 7.2 65 31-98 215-281 (374)
102 PF08241 Methyltransf_11: Meth 98.9 5.5E-09 1.2E-13 59.4 5.0 45 52-98 1-45 (95)
103 PTZ00098 phosphoethanolamine N 98.9 1E-08 2.2E-13 69.4 7.0 57 34-94 41-97 (263)
104 PRK14967 putative methyltransf 98.9 2.6E-08 5.6E-13 65.8 8.7 51 45-97 34-84 (223)
105 PRK14968 putative methyltransf 98.9 2.3E-08 5E-13 63.8 8.1 58 35-97 13-70 (188)
106 PRK14121 tRNA (guanine-N(7)-)- 98.9 1.5E-08 3.3E-13 71.7 7.8 53 46-99 121-173 (390)
107 TIGR01177 conserved hypothetic 98.9 1.8E-08 3.9E-13 70.1 8.1 65 29-98 166-230 (329)
108 COG2265 TrmA SAM-dependent met 98.9 1.1E-08 2.4E-13 73.5 7.0 67 31-100 275-343 (432)
109 KOG1499|consensus 98.8 9.3E-09 2E-13 71.2 6.4 52 45-99 58-109 (346)
110 TIGR00563 rsmB ribosomal RNA s 98.8 2.1E-08 4.6E-13 72.0 8.4 64 32-98 225-288 (426)
111 KOG1271|consensus 98.8 1.5E-08 3.3E-13 64.8 6.7 50 49-99 69-118 (227)
112 PLN02589 caffeoyl-CoA O-methyl 98.8 5.5E-08 1.2E-12 65.3 9.5 53 45-97 77-129 (247)
113 PLN02396 hexaprenyldihydroxybe 98.8 1.1E-08 2.4E-13 71.0 6.3 45 47-94 131-175 (322)
114 PRK00216 ubiE ubiquinone/menaq 98.8 3E-08 6.5E-13 65.4 8.1 50 45-94 49-98 (239)
115 KOG3420|consensus 98.8 9.5E-09 2E-13 63.5 5.1 74 22-97 21-96 (185)
116 PF05958 tRNA_U5-meth_tr: tRNA 98.8 8.4E-09 1.8E-13 72.4 5.4 67 31-100 179-246 (352)
117 PHA03411 putative methyltransf 98.8 2.6E-08 5.7E-13 67.5 7.5 65 24-93 45-109 (279)
118 TIGR00095 RNA methyltransferas 98.8 6.8E-08 1.5E-12 62.5 9.2 64 32-98 35-98 (189)
119 COG4976 Predicted methyltransf 98.8 4.7E-09 1E-13 69.3 3.6 43 47-92 125-167 (287)
120 KOG2187|consensus 98.8 3.2E-09 6.9E-14 76.6 3.0 52 45-99 381-432 (534)
121 TIGR02072 BioC biotin biosynth 98.8 3.2E-08 6.8E-13 65.2 7.5 61 32-93 18-79 (240)
122 PRK11088 rrmA 23S rRNA methylt 98.8 4.5E-08 9.7E-13 66.4 8.3 46 47-92 85-132 (272)
123 PTZ00146 fibrillarin; Provisio 98.8 2.8E-08 6.1E-13 67.9 7.2 44 45-88 130-173 (293)
124 TIGR02716 C20_methyl_CrtF C-20 98.8 5E-08 1.1E-12 67.2 8.4 51 45-97 147-197 (306)
125 PLN02336 phosphoethanolamine N 98.8 2.4E-08 5.2E-13 72.4 7.1 55 36-94 257-311 (475)
126 PHA03412 putative methyltransf 98.8 2.9E-08 6.3E-13 66.0 6.7 66 24-93 30-97 (241)
127 PRK10901 16S rRNA methyltransf 98.8 4.5E-08 9.7E-13 70.3 8.2 52 45-97 242-293 (427)
128 PRK06922 hypothetical protein; 98.8 5.9E-08 1.3E-12 72.4 8.4 49 46-95 417-465 (677)
129 PF08242 Methyltransf_12: Meth 98.8 4.9E-10 1.1E-14 64.9 -2.1 45 52-97 1-45 (99)
130 PLN02490 MPBQ/MSBQ methyltrans 98.8 2.8E-08 6.2E-13 69.4 6.3 54 46-100 112-165 (340)
131 KOG1540|consensus 98.7 5.4E-08 1.2E-12 65.1 7.2 51 46-96 99-154 (296)
132 TIGR03840 TMPT_Se_Te thiopurin 98.7 4.3E-08 9.4E-13 64.5 6.8 41 46-89 33-73 (213)
133 TIGR02081 metW methionine bios 98.7 4.6E-08 9.9E-13 63.3 6.8 45 44-90 10-54 (194)
134 PRK11727 23S rRNA mA1618 methy 98.7 4.3E-08 9.3E-13 68.0 7.0 50 47-97 114-164 (321)
135 smart00828 PKS_MT Methyltransf 98.7 4.6E-08 1E-12 64.3 6.9 48 49-97 1-48 (224)
136 PRK00811 spermidine synthase; 98.7 1.6E-07 3.5E-12 64.2 8.7 50 46-96 75-124 (283)
137 PF13489 Methyltransf_23: Meth 98.7 9.1E-08 2E-12 59.4 6.8 47 38-87 13-59 (161)
138 PRK04148 hypothetical protein; 98.7 9.6E-08 2.1E-12 58.4 6.6 43 47-92 16-59 (134)
139 PRK13255 thiopurine S-methyltr 98.7 8.4E-08 1.8E-12 63.3 6.7 42 45-89 35-76 (218)
140 KOG0820|consensus 98.7 1.2E-07 2.7E-12 63.9 7.5 71 21-96 33-104 (315)
141 TIGR00452 methyltransferase, p 98.7 9.9E-08 2.1E-12 66.1 7.1 42 46-89 120-161 (314)
142 PRK15068 tRNA mo(5)U34 methylt 98.7 1E-07 2.2E-12 66.3 7.1 43 46-90 121-163 (322)
143 PF00398 RrnaAD: Ribosomal RNA 98.7 5.9E-08 1.3E-12 65.6 5.8 76 26-106 11-87 (262)
144 TIGR01444 fkbM_fam methyltrans 98.7 1E-07 2.2E-12 58.5 6.3 47 50-97 1-47 (143)
145 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 2E-07 4.3E-12 60.9 7.7 48 46-93 38-85 (223)
146 PLN03075 nicotianamine synthas 98.6 1.9E-07 4.1E-12 64.1 7.6 49 46-94 122-171 (296)
147 PRK11188 rrmJ 23S rRNA methylt 98.6 6.6E-08 1.4E-12 63.4 5.0 38 45-82 49-86 (209)
148 PRK04457 spermidine synthase; 98.6 2.6E-07 5.7E-12 62.5 8.0 48 46-94 65-112 (262)
149 smart00138 MeTrc Methyltransfe 98.6 2.2E-07 4.8E-12 62.9 7.4 46 47-92 99-152 (264)
150 PRK11783 rlmL 23S rRNA m(2)G24 98.6 1.7E-07 3.7E-12 71.1 7.4 51 46-98 537-587 (702)
151 PF13679 Methyltransf_32: Meth 98.6 5.9E-07 1.3E-11 55.5 8.5 51 46-96 24-77 (141)
152 KOG2915|consensus 98.6 3.5E-07 7.7E-12 61.8 7.8 72 24-97 84-155 (314)
153 TIGR00438 rrmJ cell division p 98.6 8.2E-08 1.8E-12 61.8 4.7 40 45-84 30-69 (188)
154 KOG2899|consensus 98.6 1.2E-07 2.7E-12 63.0 5.5 56 38-94 49-104 (288)
155 PF09445 Methyltransf_15: RNA 98.6 2.1E-07 4.6E-12 58.8 6.3 45 50-97 2-46 (163)
156 KOG3191|consensus 98.6 6.1E-07 1.3E-11 57.4 8.2 51 48-98 44-94 (209)
157 PRK15128 23S rRNA m(5)C1962 me 98.6 2E-07 4.4E-12 66.4 6.6 51 46-98 219-269 (396)
158 PF01170 UPF0020: Putative RNA 98.6 4.4E-07 9.6E-12 58.2 7.5 69 27-98 10-87 (179)
159 PRK05134 bifunctional 3-demeth 98.6 4.3E-07 9.2E-12 60.1 7.4 49 45-96 46-94 (233)
160 PF02475 Met_10: Met-10+ like- 98.6 4E-07 8.6E-12 59.4 7.0 54 45-99 99-152 (200)
161 PLN02336 phosphoethanolamine N 98.5 2.5E-07 5.3E-12 67.2 6.5 52 35-91 27-78 (475)
162 TIGR00478 tly hemolysin TlyA f 98.5 2.4E-07 5.2E-12 61.6 5.8 39 47-87 75-113 (228)
163 PF02390 Methyltransf_4: Putat 98.5 5.1E-07 1.1E-11 58.7 7.0 53 47-100 17-69 (195)
164 KOG3010|consensus 98.5 2.9E-07 6.2E-12 61.2 5.5 46 46-94 31-77 (261)
165 PF05401 NodS: Nodulation prot 98.5 1.5E-07 3.4E-12 60.8 4.0 46 47-95 43-88 (201)
166 TIGR01983 UbiG ubiquinone bios 98.5 1E-06 2.2E-11 57.9 8.1 63 32-97 28-92 (224)
167 PF03602 Cons_hypoth95: Conser 98.5 1.2E-06 2.7E-11 56.4 8.1 70 28-99 23-92 (183)
168 PF10294 Methyltransf_16: Puta 98.5 6.7E-07 1.4E-11 57.1 6.8 50 45-96 43-92 (173)
169 KOG1663|consensus 98.5 2.1E-06 4.6E-11 56.7 9.0 65 32-98 60-124 (237)
170 KOG1500|consensus 98.5 5.1E-07 1.1E-11 62.9 6.4 55 47-108 177-231 (517)
171 PF02384 N6_Mtase: N-6 DNA Met 98.5 6.2E-07 1.4E-11 61.8 6.8 72 23-96 24-101 (311)
172 PRK04338 N(2),N(2)-dimethylgua 98.5 1.8E-06 3.8E-11 61.4 8.7 51 48-99 58-108 (382)
173 PF05724 TPMT: Thiopurine S-me 98.4 8.7E-07 1.9E-11 58.5 6.2 43 45-90 35-77 (218)
174 PLN02366 spermidine synthase 98.4 3.4E-06 7.4E-11 58.4 9.3 61 46-108 90-150 (308)
175 TIGR00417 speE spermidine synt 98.4 3.4E-06 7.5E-11 57.3 8.7 48 47-95 72-119 (270)
176 PF08003 Methyltransf_9: Prote 98.4 3E-06 6.5E-11 58.2 8.3 39 47-87 115-153 (315)
177 PRK13256 thiopurine S-methyltr 98.4 1.9E-06 4.2E-11 57.1 7.0 43 45-90 41-83 (226)
178 PRK03612 spermidine synthase; 98.4 2.9E-06 6.4E-11 62.5 8.5 45 46-91 296-340 (521)
179 PRK01581 speE spermidine synth 98.4 3.1E-06 6.7E-11 59.7 8.2 44 46-90 149-192 (374)
180 PF08123 DOT1: Histone methyla 98.3 3.7E-06 7.9E-11 55.1 7.5 60 32-94 29-88 (205)
181 cd02440 AdoMet_MTases S-adenos 98.3 2.8E-06 6.1E-11 48.0 5.6 40 50-91 1-40 (107)
182 COG1092 Predicted SAM-dependen 98.3 6.1E-06 1.3E-10 58.8 8.3 56 40-98 211-266 (393)
183 COG1041 Predicted DNA modifica 98.3 2E-06 4.3E-11 60.0 5.6 65 29-98 181-245 (347)
184 TIGR02987 met_A_Alw26 type II 98.3 3.9E-06 8.5E-11 61.8 7.4 73 24-96 3-87 (524)
185 COG0220 Predicted S-adenosylme 98.3 3.6E-06 7.9E-11 55.9 6.2 50 49-99 50-99 (227)
186 KOG3115|consensus 98.2 2.1E-06 4.6E-11 55.9 4.7 89 4-96 16-108 (249)
187 PF05185 PRMT5: PRMT5 arginine 98.2 1.3E-05 2.8E-10 58.1 9.0 58 48-109 187-247 (448)
188 PRK11933 yebU rRNA (cytosine-C 98.2 1.2E-05 2.5E-10 58.7 8.6 56 45-100 111-166 (470)
189 PF03291 Pox_MCEL: mRNA cappin 98.2 6.5E-06 1.4E-10 57.5 6.6 46 47-94 62-107 (331)
190 TIGR00006 S-adenosyl-methyltra 98.2 1.7E-05 3.6E-10 54.9 8.3 61 31-94 6-66 (305)
191 PRK11783 rlmL 23S rRNA m(2)G24 98.1 2.9E-05 6.3E-10 59.2 8.9 73 25-98 169-282 (702)
192 COG0116 Predicted N6-adenine-s 98.1 2.1E-05 4.5E-10 55.7 7.5 83 14-98 160-280 (381)
193 PF11599 AviRa: RRNA methyltra 98.1 7.8E-06 1.7E-10 53.7 4.8 72 32-103 34-108 (246)
194 COG2520 Predicted methyltransf 98.1 1.8E-05 4E-10 55.4 6.6 53 45-99 186-238 (341)
195 PF10672 Methyltrans_SAM: S-ad 98.0 3.3E-05 7.1E-10 53.0 7.5 58 46-108 122-179 (286)
196 PF06080 DUF938: Protein of un 98.0 3.5E-05 7.5E-10 50.4 6.8 64 36-100 13-77 (204)
197 COG0742 N6-adenine-specific me 98.0 7.9E-05 1.7E-09 48.1 8.4 67 29-97 25-91 (187)
198 COG3963 Phospholipid N-methylt 98.0 2.7E-05 5.8E-10 49.4 6.0 80 14-96 18-97 (194)
199 PLN02823 spermine synthase 98.0 7.2E-05 1.6E-09 52.5 8.4 60 47-108 103-162 (336)
200 KOG4300|consensus 98.0 1.4E-05 3.1E-10 52.3 4.5 48 49-98 78-125 (252)
201 PRK01544 bifunctional N5-gluta 97.9 4E-05 8.6E-10 56.4 6.5 53 47-100 347-399 (506)
202 PRK11524 putative methyltransf 97.9 9.2E-05 2E-09 50.7 7.9 47 45-94 206-252 (284)
203 PF09243 Rsm22: Mitochondrial 97.9 6E-05 1.3E-09 51.4 6.8 49 47-95 33-81 (274)
204 KOG2361|consensus 97.9 9.5E-06 2.1E-10 54.1 2.8 44 50-94 74-119 (264)
205 TIGR00308 TRM1 tRNA(guanine-26 97.9 0.00013 2.8E-09 51.9 8.6 50 49-98 46-95 (374)
206 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.9 0.00017 3.7E-09 49.5 8.6 56 45-100 83-138 (283)
207 PF01555 N6_N4_Mtase: DNA meth 97.8 0.00011 2.4E-09 47.9 7.1 54 31-90 178-231 (231)
208 PHA01634 hypothetical protein 97.8 8.9E-05 1.9E-09 45.1 5.8 48 47-96 28-75 (156)
209 KOG2730|consensus 97.8 6E-05 1.3E-09 49.8 5.2 74 28-109 76-149 (263)
210 PF05219 DREV: DREV methyltran 97.8 0.00011 2.3E-09 49.7 6.3 40 47-89 94-133 (265)
211 COG4076 Predicted RNA methylas 97.8 4.5E-05 9.8E-10 49.4 4.2 50 47-99 32-81 (252)
212 PRK13699 putative methylase; P 97.8 0.00026 5.6E-09 47.1 8.0 49 45-96 161-209 (227)
213 PF04816 DUF633: Family of unk 97.7 0.00014 3E-09 47.8 6.1 46 51-97 1-46 (205)
214 TIGR03439 methyl_EasF probable 97.7 0.00047 1E-08 48.1 8.3 56 38-93 67-125 (319)
215 KOG1975|consensus 97.7 0.00011 2.5E-09 51.1 5.0 50 44-95 114-163 (389)
216 PF01269 Fibrillarin: Fibrilla 97.7 0.00022 4.7E-09 47.3 6.1 48 44-91 70-121 (229)
217 PF00891 Methyltransf_2: O-met 97.7 0.0002 4.3E-09 47.7 6.1 43 46-90 99-141 (241)
218 PF01564 Spermine_synth: Sperm 97.6 0.00064 1.4E-08 45.8 8.5 61 46-108 75-135 (246)
219 PF05971 Methyltransf_10: Prot 97.6 0.00029 6.3E-09 48.6 6.9 56 48-108 103-159 (299)
220 COG0275 Predicted S-adenosylme 97.6 0.00067 1.4E-08 46.8 8.2 63 32-96 10-72 (314)
221 PF02527 GidB: rRNA small subu 97.6 0.00057 1.2E-08 44.2 7.4 50 50-100 51-100 (184)
222 PF01795 Methyltransf_5: MraW 97.6 0.00019 4.1E-09 49.8 5.3 60 31-93 6-65 (310)
223 KOG1501|consensus 97.5 0.0003 6.4E-09 51.0 5.5 54 50-109 69-122 (636)
224 COG3897 Predicted methyltransf 97.5 8.4E-05 1.8E-09 48.3 2.2 51 47-99 79-129 (218)
225 COG0286 HsdM Type I restrictio 97.5 0.00056 1.2E-08 50.3 6.7 72 25-98 166-240 (489)
226 PF07091 FmrO: Ribosomal RNA m 97.4 0.00053 1.1E-08 46.1 5.8 60 37-97 95-154 (251)
227 PF01728 FtsJ: FtsJ-like methy 97.4 0.00016 3.4E-09 46.2 3.2 37 47-83 23-59 (181)
228 COG0144 Sun tRNA and rRNA cyto 97.4 0.0014 3.1E-08 46.3 8.0 55 45-99 154-209 (355)
229 COG2384 Predicted SAM-dependen 97.3 0.0013 2.8E-08 43.5 6.3 53 44-97 13-65 (226)
230 COG0357 GidB Predicted S-adeno 97.2 0.0015 3.2E-08 43.2 5.7 52 48-100 68-119 (215)
231 COG0421 SpeE Spermidine syntha 97.2 0.0035 7.6E-08 43.1 7.7 58 49-108 78-135 (282)
232 PRK10611 chemotaxis methyltran 97.2 0.0038 8.3E-08 43.0 7.9 62 29-91 98-166 (287)
233 PRK10742 putative methyltransf 97.2 0.0022 4.9E-08 43.2 6.5 54 37-95 78-133 (250)
234 PRK00536 speE spermidine synth 97.1 0.0047 1E-07 42.1 8.0 59 46-108 71-129 (262)
235 PF01739 CheR: CheR methyltran 97.1 0.0016 3.4E-08 42.5 5.4 45 47-91 31-83 (196)
236 PRK11760 putative 23S rRNA C24 97.1 0.0018 4E-08 45.6 5.7 34 46-82 210-243 (357)
237 KOG4589|consensus 97.1 0.0012 2.7E-08 42.8 4.4 38 45-82 67-104 (232)
238 COG1352 CheR Methylase of chem 97.1 0.0047 1E-07 42.2 7.4 43 48-90 97-147 (268)
239 COG1189 Predicted rRNA methyla 97.1 0.0011 2.4E-08 44.3 4.2 41 46-88 78-118 (245)
240 PF07757 AdoMet_MTase: Predict 96.9 0.0018 3.8E-08 38.3 3.9 33 47-82 58-90 (112)
241 COG0293 FtsJ 23S rRNA methylas 96.9 0.0023 4.9E-08 42.0 4.5 38 45-82 43-80 (205)
242 PF12147 Methyltransf_20: Puta 96.9 0.017 3.6E-07 40.0 8.6 54 47-100 135-189 (311)
243 COG1889 NOP1 Fibrillarin-like 96.8 0.0072 1.6E-07 39.7 6.5 57 31-88 59-116 (231)
244 KOG4058|consensus 96.8 0.0041 8.8E-08 39.0 5.1 58 35-96 62-119 (199)
245 KOG0024|consensus 96.8 0.0055 1.2E-07 42.8 5.9 45 45-90 167-212 (354)
246 PF02636 Methyltransf_28: Puta 96.7 0.0093 2E-07 40.2 6.4 61 35-95 4-73 (252)
247 COG0500 SmtA SAM-dependent met 96.7 0.0075 1.6E-07 35.7 5.5 41 51-92 52-92 (257)
248 KOG3987|consensus 96.7 0.00047 1E-08 45.5 0.1 41 47-90 112-152 (288)
249 PF07942 N2227: N2227-like pro 96.5 0.012 2.6E-07 40.3 5.9 54 33-89 36-95 (270)
250 KOG1596|consensus 96.4 0.0033 7.2E-08 42.4 2.9 48 44-91 153-204 (317)
251 PF13578 Methyltransf_24: Meth 96.3 0.0034 7.3E-08 36.5 2.1 32 52-83 1-34 (106)
252 COG1063 Tdh Threonine dehydrog 96.2 0.026 5.7E-07 39.8 6.6 47 46-93 167-214 (350)
253 KOG2940|consensus 96.2 0.016 3.5E-07 39.0 5.1 43 47-91 72-114 (325)
254 PF04989 CmcI: Cephalosporin h 96.2 0.044 9.5E-07 36.1 7.0 37 47-83 32-71 (206)
255 KOG1227|consensus 96.1 0.0035 7.6E-08 43.4 1.9 50 47-98 194-244 (351)
256 cd00315 Cyt_C5_DNA_methylase C 96.1 0.017 3.7E-07 39.5 5.1 43 50-94 2-44 (275)
257 KOG1122|consensus 96.0 0.022 4.7E-07 41.2 5.5 56 45-100 239-294 (460)
258 KOG2651|consensus 96.0 0.04 8.7E-07 39.6 6.7 43 47-91 153-195 (476)
259 PF05891 Methyltransf_PK: AdoM 96.0 0.011 2.4E-07 39.1 3.7 45 47-94 55-100 (218)
260 COG2521 Predicted archaeal met 95.9 0.004 8.7E-08 41.8 1.4 45 46-92 133-177 (287)
261 PF05050 Methyltransf_21: Meth 95.9 0.041 8.9E-07 34.0 5.9 39 53-91 1-42 (167)
262 COG4262 Predicted spermidine s 95.8 0.059 1.3E-06 38.7 6.8 61 46-107 288-350 (508)
263 KOG2360|consensus 95.8 0.021 4.6E-07 40.8 4.6 57 45-101 211-267 (413)
264 COG1565 Uncharacterized conser 95.8 0.11 2.5E-06 36.9 8.1 63 34-96 63-133 (370)
265 PF02005 TRM: N2,N2-dimethylgu 95.4 0.092 2E-06 37.7 6.8 52 48-99 50-101 (377)
266 PF00145 DNA_methylase: C-5 cy 95.3 0.055 1.2E-06 37.2 5.3 42 50-93 2-43 (335)
267 COG0863 DNA modification methy 95.2 0.19 4E-06 34.3 7.6 56 37-95 212-267 (302)
268 KOG2078|consensus 95.2 0.015 3.2E-07 42.2 2.2 52 44-98 246-297 (495)
269 PF11899 DUF3419: Protein of u 94.9 0.13 2.9E-06 36.9 6.3 51 38-93 28-78 (380)
270 PF03059 NAS: Nicotianamine sy 94.7 0.16 3.4E-06 35.0 6.2 46 48-93 121-167 (276)
271 PF05206 TRM13: Methyltransfer 94.7 0.078 1.7E-06 36.1 4.6 38 45-82 16-57 (259)
272 PF05148 Methyltransf_8: Hypot 94.7 0.066 1.4E-06 35.4 4.0 45 33-82 59-103 (219)
273 KOG2920|consensus 94.6 0.037 8E-07 38.0 2.9 38 46-85 115-152 (282)
274 PRK09424 pntA NAD(P) transhydr 94.6 0.12 2.6E-06 38.6 5.6 42 47-90 164-206 (509)
275 PF04445 SAM_MT: Putative SAM- 94.5 0.18 3.9E-06 33.9 5.8 36 50-88 78-113 (234)
276 PF01861 DUF43: Protein of unk 94.4 0.64 1.4E-05 31.4 8.2 74 23-98 20-93 (243)
277 KOG0022|consensus 94.1 0.19 4.1E-06 35.5 5.5 45 45-90 190-235 (375)
278 PF03141 Methyltransf_29: Puta 94.0 0.13 2.8E-06 38.1 4.7 20 49-68 119-138 (506)
279 PF04672 Methyltransf_19: S-ad 93.9 0.33 7.1E-06 33.3 6.2 48 49-96 70-119 (267)
280 KOG2798|consensus 93.9 0.1 2.3E-06 36.6 3.8 38 48-88 151-188 (369)
281 PF02086 MethyltransfD12: D12 93.6 0.21 4.6E-06 33.3 5.0 59 31-94 6-64 (260)
282 COG1867 TRM1 N2,N2-dimethylgua 93.6 0.26 5.6E-06 35.3 5.4 47 48-95 53-99 (380)
283 COG1064 AdhP Zn-dependent alco 93.5 0.31 6.7E-06 34.6 5.8 49 45-95 164-213 (339)
284 COG1062 AdhC Zn-dependent alco 93.5 0.35 7.6E-06 34.4 5.9 46 45-91 183-229 (366)
285 KOG2793|consensus 93.4 0.27 5.8E-06 33.4 5.1 42 48-92 87-128 (248)
286 cd08283 FDH_like_1 Glutathione 93.0 0.39 8.4E-06 34.2 5.8 46 45-91 182-228 (386)
287 TIGR00675 dcm DNA-methyltransf 92.7 0.27 5.8E-06 34.3 4.6 42 51-94 1-42 (315)
288 KOG1098|consensus 92.7 0.15 3.2E-06 38.9 3.4 39 44-82 41-79 (780)
289 KOG3178|consensus 92.7 0.24 5.3E-06 35.0 4.2 47 48-98 178-224 (342)
290 KOG3924|consensus 92.6 0.25 5.4E-06 35.7 4.2 54 35-91 182-235 (419)
291 PF02737 3HCDH_N: 3-hydroxyacy 92.5 0.65 1.4E-05 29.8 5.8 43 50-94 1-44 (180)
292 COG4798 Predicted methyltransf 92.1 0.29 6.2E-06 32.3 3.7 39 45-83 46-84 (238)
293 KOG2352|consensus 92.0 0.11 2.4E-06 38.3 2.0 48 46-94 294-341 (482)
294 COG3129 Predicted SAM-dependen 91.9 0.54 1.2E-05 31.9 4.9 63 31-95 58-125 (292)
295 PRK10458 DNA cytosine methylas 91.6 0.63 1.4E-05 34.5 5.5 43 48-92 88-130 (467)
296 cd08237 ribitol-5-phosphate_DH 91.5 0.72 1.6E-05 32.2 5.6 45 45-90 161-207 (341)
297 PF06962 rRNA_methylase: Putat 91.4 0.34 7.4E-06 30.0 3.4 24 74-97 1-24 (140)
298 PRK09880 L-idonate 5-dehydroge 91.3 0.8 1.7E-05 32.0 5.6 44 46-90 168-212 (343)
299 PLN02668 indole-3-acetate carb 91.0 0.22 4.9E-06 35.9 2.7 20 48-67 64-83 (386)
300 KOG2198|consensus 91.0 1 2.2E-05 32.3 5.8 54 45-98 153-209 (375)
301 COG0270 Dcm Site-specific DNA 90.8 0.75 1.6E-05 32.3 5.1 45 48-94 3-47 (328)
302 KOG3045|consensus 90.8 0.5 1.1E-05 32.6 4.0 30 33-63 167-196 (325)
303 TIGR00497 hsdM type I restrict 90.8 1.6 3.6E-05 32.4 7.1 72 25-96 195-269 (501)
304 PF02254 TrkA_N: TrkA-N domain 90.7 0.51 1.1E-05 27.5 3.7 36 56-91 4-40 (116)
305 cd00401 AdoHcyase S-adenosyl-L 90.6 0.87 1.9E-05 33.2 5.4 42 46-89 200-242 (413)
306 PLN02740 Alcohol dehydrogenase 90.4 1 2.2E-05 32.0 5.5 45 45-90 196-241 (381)
307 TIGR02818 adh_III_F_hyde S-(hy 90.0 1.9 4.1E-05 30.5 6.6 45 45-90 183-228 (368)
308 KOG1709|consensus 89.8 2.2 4.7E-05 28.8 6.3 45 46-92 100-144 (271)
309 KOG2671|consensus 89.6 0.24 5.3E-06 35.3 1.8 39 45-86 206-244 (421)
310 TIGR03366 HpnZ_proposed putati 89.5 1.9 4E-05 29.2 6.1 44 46-90 119-163 (280)
311 TIGR03201 dearomat_had 6-hydro 89.1 1.6 3.6E-05 30.5 5.7 44 45-90 164-208 (349)
312 PF12242 Eno-Rase_NADH_b: NAD( 88.9 1.3 2.8E-05 24.6 4.0 36 46-81 37-73 (78)
313 KOG1269|consensus 88.8 0.79 1.7E-05 32.9 4.0 50 45-96 108-157 (364)
314 PF03721 UDPG_MGDP_dh_N: UDP-g 88.5 1.6 3.4E-05 28.2 4.9 39 49-89 1-40 (185)
315 PF05575 V_cholerae_RfbT: Vibr 88.2 0.56 1.2E-05 30.3 2.7 58 38-96 70-127 (286)
316 TIGR02822 adh_fam_2 zinc-bindi 88.0 2.3 4.9E-05 29.6 5.8 45 45-91 163-208 (329)
317 PRK07819 3-hydroxybutyryl-CoA 87.9 2 4.3E-05 29.6 5.4 43 49-94 6-50 (286)
318 cd08239 THR_DH_like L-threonin 87.9 2.3 4.9E-05 29.5 5.8 45 45-90 161-206 (339)
319 TIGR01202 bchC 2-desacetyl-2-h 87.7 2.7 5.9E-05 28.9 6.0 43 47-90 144-187 (308)
320 TIGR00561 pntA NAD(P) transhyd 87.7 2.1 4.5E-05 32.2 5.6 42 47-90 163-205 (511)
321 TIGR03451 mycoS_dep_FDH mycoth 87.5 2.4 5.3E-05 29.7 5.8 45 45-90 174-219 (358)
322 cd08281 liver_ADH_like1 Zinc-d 87.5 2.3 4.9E-05 30.1 5.6 45 45-90 189-234 (371)
323 PTZ00357 methyltransferase; Pr 87.4 3.3 7.2E-05 32.7 6.6 42 50-91 703-747 (1072)
324 KOG1331|consensus 87.2 0.33 7.2E-06 33.5 1.3 40 46-90 44-83 (293)
325 PF01234 NNMT_PNMT_TEMT: NNMT/ 87.2 0.91 2E-05 31.0 3.4 45 47-94 56-101 (256)
326 PLN02827 Alcohol dehydrogenase 86.7 2.8 6.2E-05 29.8 5.8 44 45-89 191-235 (378)
327 PRK06035 3-hydroxyacyl-CoA deh 86.7 3.1 6.8E-05 28.5 5.8 42 49-93 4-47 (291)
328 PF03492 Methyltransf_7: SAM d 86.3 0.81 1.8E-05 32.3 2.8 21 47-67 16-36 (334)
329 cd08301 alcohol_DH_plants Plan 86.2 3 6.6E-05 29.3 5.7 45 45-90 185-230 (369)
330 COG5379 BtaA S-adenosylmethion 86.1 4.8 0.0001 28.5 6.3 47 45-94 61-107 (414)
331 PRK08293 3-hydroxybutyryl-CoA 85.7 2.9 6.3E-05 28.6 5.3 41 49-92 4-46 (287)
332 COG3510 CmcI Cephalosporin hyd 85.4 4.4 9.6E-05 26.8 5.6 42 46-87 68-112 (237)
333 cd08300 alcohol_DH_class_III c 85.2 4 8.6E-05 28.8 5.9 44 45-89 184-228 (368)
334 COG1568 Predicted methyltransf 85.1 2.1 4.6E-05 29.9 4.2 54 47-102 152-205 (354)
335 PF00107 ADH_zinc_N: Zinc-bind 85.1 1.8 4E-05 25.5 3.7 33 57-91 1-33 (130)
336 cd05188 MDR Medium chain reduc 85.1 4.5 9.7E-05 26.5 5.9 43 46-90 133-176 (271)
337 KOG2782|consensus 85.0 1.9 4.2E-05 29.1 3.9 59 31-92 29-87 (303)
338 KOG0821|consensus 85.0 1.7 3.8E-05 29.4 3.7 42 47-90 50-91 (326)
339 KOG3201|consensus 84.8 0.52 1.1E-05 30.2 1.2 49 47-96 29-78 (201)
340 cd08277 liver_alcohol_DH_like 84.5 4.2 9.1E-05 28.6 5.8 44 45-89 182-226 (365)
341 PRK11730 fadB multifunctional 84.4 3.2 6.9E-05 32.4 5.5 43 49-94 314-358 (715)
342 cd08230 glucose_DH Glucose deh 84.4 4.1 9E-05 28.5 5.7 42 46-89 171-216 (355)
343 COG4301 Uncharacterized conser 84.3 8.5 0.00018 26.6 6.7 48 47-94 78-128 (321)
344 PF12692 Methyltransf_17: S-ad 84.1 8.1 0.00017 24.4 6.1 35 47-82 28-62 (160)
345 COG0677 WecC UDP-N-acetyl-D-ma 84.0 1 2.3E-05 32.7 2.5 38 49-88 10-48 (436)
346 PF03514 GRAS: GRAS domain fam 83.6 6.7 0.00015 28.2 6.5 56 37-94 102-167 (374)
347 cd08254 hydroxyacyl_CoA_DH 6-h 83.4 5.3 0.00011 27.4 5.8 44 45-90 163-207 (338)
348 PRK07066 3-hydroxybutyryl-CoA 83.4 6 0.00013 27.9 6.0 42 49-93 8-51 (321)
349 COG1250 FadB 3-hydroxyacyl-CoA 83.2 4.8 0.0001 28.3 5.4 45 49-95 4-49 (307)
350 TIGR00936 ahcY adenosylhomocys 83.2 3.9 8.5E-05 29.9 5.2 38 46-85 193-231 (406)
351 TIGR02437 FadB fatty oxidation 83.2 2.8 6.1E-05 32.7 4.7 43 49-94 314-358 (714)
352 KOG2352|consensus 82.3 7.2 0.00016 29.1 6.2 48 43-92 43-91 (482)
353 PRK09260 3-hydroxybutyryl-CoA 82.1 3.9 8.4E-05 28.0 4.7 40 50-92 3-44 (288)
354 KOG1209|consensus 81.9 3 6.5E-05 28.2 3.8 36 47-82 6-42 (289)
355 KOG2912|consensus 81.8 3 6.6E-05 29.7 4.0 46 52-98 107-152 (419)
356 KOG1253|consensus 81.8 0.69 1.5E-05 34.4 1.0 54 47-100 109-162 (525)
357 PRK05808 3-hydroxybutyryl-CoA 81.8 5.4 0.00012 27.2 5.3 40 50-92 5-46 (282)
358 PRK01747 mnmC bifunctional tRN 81.6 3.1 6.8E-05 32.0 4.4 36 47-82 57-103 (662)
359 COG1255 Uncharacterized protei 81.4 2.9 6.4E-05 25.2 3.3 34 47-83 13-47 (129)
360 TIGR02441 fa_ox_alpha_mit fatt 81.3 3.5 7.6E-05 32.4 4.6 44 49-95 336-381 (737)
361 cd08238 sorbose_phosphate_red 81.0 6.9 0.00015 28.1 5.8 47 45-91 173-222 (410)
362 PRK10309 galactitol-1-phosphat 80.6 7.4 0.00016 27.1 5.8 44 45-89 158-202 (347)
363 PF01262 AlaDh_PNT_C: Alanine 80.1 8.6 0.00019 24.2 5.5 42 47-90 19-61 (168)
364 PF03686 UPF0146: Uncharacteri 80.1 11 0.00024 23.0 6.0 35 46-83 12-47 (127)
365 TIGR00518 alaDH alanine dehydr 80.0 7.1 0.00015 28.0 5.6 42 47-90 166-208 (370)
366 cd08285 NADP_ADH NADP(H)-depen 79.6 8.8 0.00019 26.7 5.9 45 45-90 164-209 (351)
367 PRK05476 S-adenosyl-L-homocyst 79.4 5.9 0.00013 29.1 5.0 40 46-87 210-250 (425)
368 PRK11154 fadJ multifunctional 79.2 7.1 0.00015 30.5 5.7 44 49-94 310-355 (708)
369 PLN03154 putative allyl alcoho 78.6 13 0.00029 26.1 6.5 43 45-89 156-200 (348)
370 PF07101 DUF1363: Protein of u 78.1 0.85 1.8E-05 26.4 0.4 18 51-68 6-23 (124)
371 TIGR02279 PaaC-3OHAcCoADH 3-hy 78.0 6.3 0.00014 29.5 5.0 45 47-94 4-50 (503)
372 cd08255 2-desacetyl-2-hydroxye 77.9 9 0.00019 25.5 5.4 46 45-91 95-141 (277)
373 TIGR02819 fdhA_non_GSH formald 77.3 11 0.00023 27.2 5.8 45 45-90 183-228 (393)
374 KOG2811|consensus 77.0 6.9 0.00015 28.4 4.6 40 47-87 182-224 (420)
375 cd01075 NAD_bind_Leu_Phe_Val_D 76.6 13 0.00028 24.2 5.6 43 47-91 27-70 (200)
376 PRK07523 gluconate 5-dehydroge 76.4 16 0.00035 24.0 6.2 46 47-93 9-55 (255)
377 KOG0822|consensus 76.2 19 0.0004 27.7 6.8 42 49-90 369-413 (649)
378 PRK06153 hypothetical protein; 75.9 11 0.00023 27.5 5.4 35 47-82 175-210 (393)
379 PF10609 ParA: ParA/MinD ATPas 75.7 12 0.00026 21.0 5.2 44 50-93 4-47 (81)
380 COG5459 Predicted rRNA methyla 75.6 2.5 5.4E-05 30.6 2.2 41 47-87 113-153 (484)
381 TIGR02440 FadJ fatty oxidation 75.5 9.5 0.00021 29.8 5.5 44 49-94 305-350 (699)
382 COG1004 Ugd Predicted UDP-gluc 75.4 8.4 0.00018 28.2 4.8 39 49-89 1-40 (414)
383 TIGR01381 E1_like_apg7 E1-like 75.4 5.4 0.00012 31.0 4.0 35 47-82 337-372 (664)
384 cd08296 CAD_like Cinnamyl alco 75.0 14 0.0003 25.5 5.8 43 45-89 161-204 (333)
385 cd08245 CAD Cinnamyl alcohol d 75.0 14 0.0003 25.3 5.8 43 45-89 160-203 (330)
386 PLN02545 3-hydroxybutyryl-CoA 74.7 16 0.00035 25.0 6.0 41 49-92 5-47 (295)
387 PRK09496 trkA potassium transp 74.4 27 0.00058 25.4 7.3 56 34-91 217-273 (453)
388 PLN02178 cinnamyl-alcohol dehy 74.2 12 0.00027 26.6 5.5 36 46-83 177-213 (375)
389 TIGR02825 B4_12hDH leukotriene 74.1 26 0.00055 24.1 7.0 43 45-89 136-180 (325)
390 PRK08945 putative oxoacyl-(acy 74.0 18 0.00039 23.7 5.9 46 46-92 10-56 (247)
391 PRK10669 putative cation:proto 73.5 5.5 0.00012 30.0 3.7 40 49-90 418-458 (558)
392 COG0569 TrkA K+ transport syst 73.4 13 0.00027 24.8 5.0 39 49-89 1-40 (225)
393 cd08278 benzyl_alcohol_DH Benz 73.4 16 0.00035 25.7 5.9 44 45-89 184-228 (365)
394 PRK06129 3-hydroxyacyl-CoA deh 73.3 18 0.00038 25.1 6.0 41 49-92 3-45 (308)
395 cd08242 MDR_like Medium chain 72.7 17 0.00036 24.8 5.7 44 45-90 153-197 (319)
396 PLN02586 probable cinnamyl alc 72.6 11 0.00024 26.6 4.9 36 46-83 182-218 (360)
397 PRK06124 gluconate 5-dehydroge 72.6 23 0.0005 23.3 6.2 45 47-92 10-55 (256)
398 PRK03659 glutathione-regulated 72.5 6.1 0.00013 30.2 3.8 40 49-90 401-441 (601)
399 PRK06949 short chain dehydroge 72.0 25 0.00054 23.1 6.3 44 47-91 8-52 (258)
400 PRK08268 3-hydroxy-acyl-CoA de 71.8 9.8 0.00021 28.6 4.6 44 48-94 7-52 (507)
401 PRK08703 short chain dehydroge 71.6 25 0.00054 22.9 6.6 44 47-91 5-49 (239)
402 KOG2918|consensus 71.4 17 0.00038 25.8 5.4 64 24-88 65-129 (335)
403 PRK07326 short chain dehydroge 71.1 22 0.00048 23.0 5.8 41 48-89 6-47 (237)
404 PRK07530 3-hydroxybutyryl-CoA 71.0 16 0.00034 25.0 5.3 41 49-92 5-47 (292)
405 PLN02494 adenosylhomocysteinas 70.9 14 0.0003 27.7 5.1 37 46-84 252-289 (477)
406 PRK08306 dipicolinate synthase 70.6 19 0.00042 25.0 5.6 41 47-89 151-192 (296)
407 PRK06130 3-hydroxybutyryl-CoA 70.6 22 0.00047 24.6 5.9 40 49-91 5-46 (311)
408 cd08232 idonate-5-DH L-idonate 69.8 19 0.00042 24.8 5.6 43 47-90 165-208 (339)
409 PF00899 ThiF: ThiF family; I 69.8 9.2 0.0002 23.0 3.5 34 48-82 2-36 (135)
410 PRK08213 gluconate 5-dehydroge 69.6 28 0.00062 22.9 6.2 45 47-92 11-56 (259)
411 PRK15057 UDP-glucose 6-dehydro 69.6 9.1 0.0002 27.7 4.0 38 50-90 2-40 (388)
412 KOG1252|consensus 69.4 7.7 0.00017 27.8 3.4 37 47-84 211-251 (362)
413 PF05711 TylF: Macrocin-O-meth 69.4 30 0.00064 23.6 6.1 53 28-80 53-111 (248)
414 cd08261 Zn_ADH7 Alcohol dehydr 69.2 22 0.00047 24.5 5.7 43 45-89 157-200 (337)
415 PLN02353 probable UDP-glucose 69.1 16 0.00034 27.3 5.1 39 49-89 2-43 (473)
416 PRK15182 Vi polysaccharide bio 68.7 11 0.00023 27.7 4.2 41 47-89 5-45 (425)
417 TIGR02356 adenyl_thiF thiazole 68.5 10 0.00023 24.6 3.8 34 47-81 20-54 (202)
418 PRK08328 hypothetical protein; 68.3 10 0.00022 25.3 3.8 35 47-82 26-61 (231)
419 PRK03562 glutathione-regulated 68.1 7.8 0.00017 29.8 3.5 40 49-90 401-441 (621)
420 PRK07814 short chain dehydroge 67.9 33 0.00071 22.8 6.3 43 47-90 9-52 (263)
421 cd05278 FDH_like Formaldehyde 67.9 27 0.00058 24.1 5.9 44 45-89 165-209 (347)
422 COG1087 GalE UDP-glucose 4-epi 67.6 8.1 0.00018 27.3 3.2 53 27-82 224-277 (329)
423 COG0338 Dam Site-specific DNA 67.6 4.2 9E-05 28.1 1.8 47 38-88 16-62 (274)
424 cd08282 PFDH_like Pseudomonas 67.3 26 0.00057 24.7 5.9 44 45-89 174-218 (375)
425 cd00757 ThiF_MoeB_HesA_family 67.0 12 0.00026 24.8 3.9 35 47-82 20-55 (228)
426 PRK12475 thiamine/molybdopteri 66.2 12 0.00026 26.6 3.9 35 47-82 23-58 (338)
427 PLN02514 cinnamyl-alcohol dehy 66.1 28 0.0006 24.5 5.8 41 46-88 179-220 (357)
428 TIGR02354 thiF_fam2 thiamine b 65.8 13 0.00029 24.2 3.9 33 47-81 20-54 (200)
429 TIGR02355 moeB molybdopterin s 65.7 13 0.00028 25.1 3.8 35 47-82 23-58 (240)
430 PRK02318 mannitol-1-phosphate 65.6 21 0.00045 25.7 5.1 40 49-91 1-43 (381)
431 cd08231 MDR_TM0436_like Hypoth 65.5 29 0.00062 24.2 5.8 42 47-89 177-219 (361)
432 PRK07576 short chain dehydroge 65.4 38 0.00082 22.6 6.3 42 47-89 8-50 (264)
433 cd05285 sorbitol_DH Sorbitol d 65.2 26 0.00056 24.3 5.4 44 45-89 160-204 (343)
434 cd08295 double_bond_reductase_ 65.1 26 0.00056 24.3 5.4 44 45-90 149-194 (338)
435 PRK09422 ethanol-active dehydr 65.1 30 0.00065 23.8 5.8 43 45-89 160-204 (338)
436 COG1179 Dinucleotide-utilizing 64.6 12 0.00026 25.7 3.4 41 47-88 29-70 (263)
437 PRK07417 arogenate dehydrogena 64.6 18 0.00038 24.7 4.4 38 50-90 2-41 (279)
438 cd08246 crotonyl_coA_red croto 64.3 31 0.00068 24.5 5.8 44 45-90 191-236 (393)
439 PRK07454 short chain dehydroge 64.3 37 0.0008 22.1 6.3 43 47-90 5-48 (241)
440 cd08234 threonine_DH_like L-th 64.0 29 0.00063 23.8 5.5 44 45-89 157-201 (334)
441 COG1748 LYS9 Saccharopine dehy 64.0 25 0.00055 25.6 5.2 41 49-91 2-44 (389)
442 cd08265 Zn_ADH3 Alcohol dehydr 64.0 31 0.00068 24.5 5.8 44 45-89 201-245 (384)
443 cd08294 leukotriene_B4_DH_like 63.9 43 0.00093 22.8 6.3 44 45-90 141-186 (329)
444 PRK07424 bifunctional sterol d 63.7 23 0.00051 25.9 5.1 38 47-85 177-215 (406)
445 PRK09496 trkA potassium transp 63.7 25 0.00055 25.5 5.3 39 50-90 2-41 (453)
446 PRK07533 enoyl-(acyl carrier p 63.7 38 0.00083 22.5 5.9 37 47-83 9-47 (258)
447 cd05279 Zn_ADH1 Liver alcohol 63.6 34 0.00074 24.1 5.9 44 45-89 181-225 (365)
448 cd00755 YgdL_like Family of ac 63.1 15 0.00032 24.7 3.7 35 47-82 10-45 (231)
449 PRK10083 putative oxidoreducta 63.0 37 0.0008 23.4 5.9 45 45-90 158-204 (339)
450 PF02826 2-Hacid_dh_C: D-isome 62.9 19 0.00041 22.9 4.1 38 47-86 35-73 (178)
451 PRK07067 sorbitol dehydrogenas 62.7 36 0.00079 22.4 5.6 40 48-88 6-46 (257)
452 PLN02702 L-idonate 5-dehydroge 62.5 36 0.00077 23.9 5.8 44 45-89 179-223 (364)
453 PRK15116 sulfur acceptor prote 62.4 16 0.00035 25.1 3.9 35 47-82 29-64 (268)
454 PRK07774 short chain dehydroge 62.1 41 0.00089 21.9 6.1 44 47-91 5-49 (250)
455 PRK05690 molybdopterin biosynt 61.9 18 0.00039 24.4 4.1 35 47-82 31-66 (245)
456 cd08286 FDH_like_ADH2 formalde 60.9 40 0.00086 23.3 5.8 44 45-89 164-208 (345)
457 cd08299 alcohol_DH_class_I_II_ 60.9 39 0.00085 23.9 5.8 44 45-89 188-232 (373)
458 COG4017 Uncharacterized protei 60.6 14 0.00031 24.6 3.2 44 46-92 43-87 (254)
459 PRK03369 murD UDP-N-acetylmura 60.6 34 0.00074 25.5 5.6 39 46-86 10-49 (488)
460 PRK09987 dTDP-4-dehydrorhamnos 60.6 17 0.00036 24.9 3.8 31 50-81 2-32 (299)
461 PRK08762 molybdopterin biosynt 60.5 35 0.00075 24.5 5.5 34 47-81 134-168 (376)
462 PRK07688 thiamine/molybdopteri 60.5 18 0.00039 25.7 4.0 34 47-82 23-58 (339)
463 TIGR00571 dam DNA adenine meth 60.4 34 0.00075 23.3 5.2 37 48-89 26-62 (266)
464 PF06690 DUF1188: Protein of u 60.1 25 0.00055 24.0 4.4 42 49-92 43-84 (252)
465 PRK07502 cyclohexadienyl dehyd 59.8 34 0.00074 23.6 5.2 40 49-89 7-48 (307)
466 cd08240 6_hydroxyhexanoate_dh_ 59.6 40 0.00088 23.4 5.6 42 47-89 175-217 (350)
467 PRK08644 thiamine biosynthesis 59.6 20 0.00042 23.7 3.8 33 47-81 27-61 (212)
468 PF11968 DUF3321: Putative met 59.5 4.2 9.1E-05 27.2 0.7 31 49-83 53-83 (219)
469 cd05283 CAD1 Cinnamyl alcohol 59.4 41 0.00089 23.2 5.6 43 45-89 167-210 (337)
470 COG3392 Adenine-specific DNA m 59.1 21 0.00045 24.9 3.9 34 46-82 26-59 (330)
471 KOG1201|consensus 59.0 47 0.001 23.4 5.7 46 47-95 37-85 (300)
472 PRK11064 wecC UDP-N-acetyl-D-m 59.0 18 0.00039 26.4 3.9 36 49-87 4-41 (415)
473 PRK12828 short chain dehydroge 58.8 46 0.00099 21.4 5.8 35 48-83 7-42 (239)
474 PRK05597 molybdopterin biosynt 58.8 21 0.00045 25.5 4.1 34 47-82 27-62 (355)
475 PF04321 RmlD_sub_bind: RmlD s 58.6 37 0.00081 23.2 5.2 29 49-78 1-30 (286)
476 PRK12384 sorbitol-6-phosphate 58.5 50 0.0011 21.7 6.0 38 49-87 3-41 (259)
477 PRK07102 short chain dehydroge 58.4 49 0.0011 21.5 5.9 39 49-88 2-41 (243)
478 cd01483 E1_enzyme_family Super 58.2 20 0.00043 21.6 3.5 30 50-81 1-32 (143)
479 cd01487 E1_ThiF_like E1_ThiF_l 58.1 20 0.00044 22.7 3.6 31 50-82 1-33 (174)
480 PRK05993 short chain dehydroge 58.0 52 0.0011 22.1 5.8 38 48-86 4-42 (277)
481 PRK14106 murD UDP-N-acetylmura 58.0 46 0.001 24.2 5.9 34 47-82 4-38 (450)
482 cd08233 butanediol_DH_like (2R 57.0 53 0.0011 22.8 5.9 45 45-90 170-215 (351)
483 cd08241 QOR1 Quinone oxidoredu 56.9 52 0.0011 22.0 5.7 43 45-89 137-181 (323)
484 PRK14045 1-aminocyclopropane-1 56.9 23 0.00049 24.9 4.0 33 50-82 186-221 (329)
485 PRK08251 short chain dehydroge 56.6 53 0.0011 21.4 6.1 41 49-90 3-44 (248)
486 PRK07666 fabG 3-ketoacyl-(acyl 56.3 53 0.0011 21.3 6.3 39 48-87 7-46 (239)
487 KOG2305|consensus 56.2 17 0.00038 24.9 3.1 44 50-95 5-49 (313)
488 COG1743 Adenine-specific DNA m 55.9 20 0.00043 28.7 3.8 43 47-92 90-132 (875)
489 cd05293 LDH_1 A subgroup of L- 55.9 34 0.00075 24.0 4.7 39 47-85 2-41 (312)
490 PRK07878 molybdopterin biosynt 55.9 21 0.00045 25.9 3.7 34 47-82 41-76 (392)
491 PRK07411 hypothetical protein; 55.8 22 0.00047 25.8 3.8 35 47-82 37-72 (390)
492 PLN02695 GDP-D-mannose-3',5'-e 55.8 26 0.00057 24.9 4.2 35 46-81 19-54 (370)
493 PRK08223 hypothetical protein; 55.7 24 0.00052 24.6 3.8 34 47-82 26-61 (287)
494 PRK08017 oxidoreductase; Provi 55.6 48 0.001 21.7 5.3 36 50-86 4-40 (256)
495 PTZ00075 Adenosylhomocysteinas 55.6 40 0.00087 25.4 5.2 38 46-85 252-290 (476)
496 PRK01438 murD UDP-N-acetylmura 55.5 67 0.0015 23.7 6.4 52 47-100 15-68 (480)
497 cd08298 CAD2 Cinnamyl alcohol 55.5 55 0.0012 22.3 5.7 43 45-89 165-208 (329)
498 PHA00684 hypothetical protein 55.1 29 0.00062 21.2 3.6 22 50-71 78-100 (128)
499 PF03446 NAD_binding_2: NAD bi 54.9 28 0.0006 21.7 3.8 38 50-89 3-41 (163)
500 PRK10904 DNA adenine methylase 54.9 28 0.0006 23.9 4.1 40 45-89 25-64 (271)
No 1
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.79 E-value=2.6e-19 Score=116.99 Aligned_cols=97 Identities=35% Similarity=0.583 Sum_probs=83.9
Q ss_pred CCcCCCCCcccC----CCCCCCCccccccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEE
Q psy5585 1 MNQVDRGNFCSH----NPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV 76 (110)
Q Consensus 1 ~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~ 76 (110)
|.++||+.|.|. .+|.|.+++++.+..++.+.+...+++.+. ++++++|||||||+|+.+..+++..++.++|+
T Consensus 24 ~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv 101 (209)
T PF01135_consen 24 FRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVV 101 (209)
T ss_dssp HHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEE
T ss_pred HHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEE
Confidence 568999999999 499999999999999999999999999998 89999999999999999999999998888999
Q ss_pred EEeCCHHHHHHHHHHHHhhcccc
Q psy5585 77 GIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 77 ~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
++|.++.+++.|++++...+..+
T Consensus 102 ~vE~~~~l~~~A~~~l~~~~~~n 124 (209)
T PF01135_consen 102 SVERDPELAERARRNLARLGIDN 124 (209)
T ss_dssp EEESBHHHHHHHHHHHHHHTTHS
T ss_pred EECccHHHHHHHHHHHHHhccCc
Confidence 99999999999999999877654
No 2
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.78 E-value=1.4e-18 Score=113.87 Aligned_cols=95 Identities=40% Similarity=0.646 Sum_probs=86.7
Q ss_pred CCcCCCCCcccCC----CCCCCCccccccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEE
Q psy5585 1 MNQVDRGNFCSHN----PYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV 76 (110)
Q Consensus 1 ~~~~~r~~~~~~~----~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~ 76 (110)
|.++||+.|.|.. +|.|.+++++.+..++.+.+...+++.+. +.++.+|||+|||+|+.+..+++..+++++|+
T Consensus 28 ~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~ 105 (212)
T PRK13942 28 LLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVV 105 (212)
T ss_pred HHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEE
Confidence 6789999999884 99999999999999999999999999887 77889999999999999999999876667999
Q ss_pred EEeCCHHHHHHHHHHHHhhcc
Q psy5585 77 GIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 77 ~vD~s~~~~~~a~~~~~~~~~ 97 (110)
++|+++++++.++++++..+.
T Consensus 106 ~vE~~~~~~~~a~~~l~~~g~ 126 (212)
T PRK13942 106 TIERIPELAEKAKKTLKKLGY 126 (212)
T ss_pred EEeCCHHHHHHHHHHHHHcCC
Confidence 999999999999999987654
No 3
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.8e-18 Score=111.99 Aligned_cols=95 Identities=37% Similarity=0.591 Sum_probs=88.6
Q ss_pred CCcCCCCCcccCC----CCCCCCccccccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEE
Q psy5585 1 MNQVDRGNFCSHN----PYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV 76 (110)
Q Consensus 1 ~~~~~r~~~~~~~----~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~ 76 (110)
|.++||+.|.|.. +|.|.+++++.+++++.+.+...+++.+. +.++++|||||||+|+.+..+++..+ +|+
T Consensus 24 ~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~---~V~ 98 (209)
T COG2518 24 FLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVV 98 (209)
T ss_pred HHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC---eEE
Confidence 5789999999964 99999999999999999999999999998 88999999999999999999999975 599
Q ss_pred EEeCCHHHHHHHHHHHHhhccccc
Q psy5585 77 GIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 77 ~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
++|..+...+.|++++...+..++
T Consensus 99 siEr~~~L~~~A~~~L~~lg~~nV 122 (209)
T COG2518 99 SIERIEELAEQARRNLETLGYENV 122 (209)
T ss_pred EEEEcHHHHHHHHHHHHHcCCCce
Confidence 999999999999999999887554
No 4
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.76 E-value=4.6e-18 Score=111.58 Aligned_cols=96 Identities=39% Similarity=0.670 Sum_probs=86.2
Q ss_pred CCcCCCCCcccC----CCCCCCCccccccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEE
Q psy5585 1 MNQVDRGNFCSH----NPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV 76 (110)
Q Consensus 1 ~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~ 76 (110)
|.++||+.|.+. .+|.+.+.+++.+..+..+.....+++.+. +.++.+|||+|||+|+.+..+++..+++++|+
T Consensus 29 ~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~ 106 (215)
T TIGR00080 29 LLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVV 106 (215)
T ss_pred HHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEE
Confidence 678999999998 389999999999988888888888998886 77889999999999999999999976667899
Q ss_pred EEeCCHHHHHHHHHHHHhhccc
Q psy5585 77 GIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 77 ~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
++|+++.+++.+++++...+++
T Consensus 107 ~vD~~~~~~~~A~~~~~~~g~~ 128 (215)
T TIGR00080 107 SIERIPELAEKAERRLRKLGLD 128 (215)
T ss_pred EEeCCHHHHHHHHHHHHHCCCC
Confidence 9999999999999999887653
No 5
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.76 E-value=6e-18 Score=110.38 Aligned_cols=95 Identities=33% Similarity=0.469 Sum_probs=84.2
Q ss_pred CCcCCCCCcccCC----CCCCCCccccccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEE
Q psy5585 1 MNQVDRGNFCSHN----PYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV 76 (110)
Q Consensus 1 ~~~~~r~~~~~~~----~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~ 76 (110)
|.++||+.|.|.. +|.+.+.++..+..+..+.+...+++.+. +.++.+|||+|||+|+.+..+++..++.++|+
T Consensus 24 ~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~ 101 (205)
T PRK13944 24 MLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVY 101 (205)
T ss_pred HHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEE
Confidence 6789999999874 99999999999999988888888888876 66778999999999999999999876567899
Q ss_pred EEeCCHHHHHHHHHHHHhhcc
Q psy5585 77 GIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 77 ~vD~s~~~~~~a~~~~~~~~~ 97 (110)
++|+++++++.+++++...+.
T Consensus 102 ~iD~~~~~~~~a~~~l~~~~~ 122 (205)
T PRK13944 102 TVEIVKELAIYAAQNIERLGY 122 (205)
T ss_pred EEeCCHHHHHHHHHHHHHcCC
Confidence 999999999999999987654
No 6
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.63 E-value=2.3e-15 Score=98.52 Aligned_cols=93 Identities=28% Similarity=0.471 Sum_probs=81.0
Q ss_pred CCcCCCCCcccC----CCCCCCCccccccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEE
Q psy5585 1 MNQVDRGNFCSH----NPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV 76 (110)
Q Consensus 1 ~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~ 76 (110)
|..+||+.|.|. ..|.+.+.++..+..++.+.+...+++.+. +.++.+|||+|||+|+.+..+++..+ +|+
T Consensus 30 ~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~---~v~ 104 (212)
T PRK00312 30 IEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR---RVF 104 (212)
T ss_pred HHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHHhC---EEE
Confidence 568899999885 499999999999888899999988888776 67888999999999999998888752 699
Q ss_pred EEeCCHHHHHHHHHHHHhhccc
Q psy5585 77 GIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 77 ~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
++|+++.+++.+++++...+..
T Consensus 105 ~vd~~~~~~~~a~~~~~~~~~~ 126 (212)
T PRK00312 105 SVERIKTLQWEAKRRLKQLGLH 126 (212)
T ss_pred EEeCCHHHHHHHHHHHHHCCCC
Confidence 9999999999999999876543
No 7
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.63 E-value=2.9e-15 Score=103.46 Aligned_cols=96 Identities=26% Similarity=0.416 Sum_probs=77.7
Q ss_pred CCcCCCCCcccCC-----CCCCCCccc-ccc---ceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCC
Q psy5585 1 MNQVDRGNFCSHN-----PYLDAPQSI-GYK---VTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGE 71 (110)
Q Consensus 1 ~~~~~r~~~~~~~-----~y~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~ 71 (110)
|.++||+.|.|.. .|.|.++++ ..+ ...+.+.+...+++.+. +.++.+|||+|||+|..+..+++..+.
T Consensus 27 ~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~ 104 (322)
T PRK13943 27 FLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGE 104 (322)
T ss_pred HHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCC
Confidence 6789999999974 588888765 333 35556667777777765 667889999999999999999998765
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 72 HGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 72 ~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
.++|+++|.++++++.|+++++..+.+
T Consensus 105 ~g~VvgVDis~~~l~~Ar~~l~~~g~~ 131 (322)
T PRK13943 105 KGLVVSVEYSRKICEIAKRNVRRLGIE 131 (322)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 568999999999999999998876653
No 8
>KOG1661|consensus
Probab=99.60 E-value=4e-15 Score=96.05 Aligned_cols=107 Identities=53% Similarity=0.923 Sum_probs=94.5
Q ss_pred CCcCCCCCcccC----CCCCCCCccccccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEE-
Q psy5585 1 MNQVDRGNFCSH----NPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKA- 75 (110)
Q Consensus 1 ~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v- 75 (110)
|..++|.+|+|. ++|.+.+..++++..++.+.+...+++.|..++.++.++||+|+|+|+++..++..++.++.+
T Consensus 32 ~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~ 111 (237)
T KOG1661|consen 32 MRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNV 111 (237)
T ss_pred HHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccc
Confidence 567899999999 899999999999999999999999999998889999999999999999999999988887754
Q ss_pred EEEeCCHHHHHHHHHHHHhhc-----cccccccceee
Q psy5585 76 VGIDHIPDLVNSSVKNVEKSH-----KALLDSGRVLL 107 (110)
Q Consensus 76 ~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 107 (110)
+|||.-++.++++++++.+.- .+.+..+.+.|
T Consensus 112 ~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 112 HGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred cchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 999999999999999998764 44444444444
No 9
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.44 E-value=9.4e-13 Score=84.01 Aligned_cols=70 Identities=26% Similarity=0.405 Sum_probs=63.4
Q ss_pred ecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5585 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
++.+.+....+..|. +.+++.+||+|||||.+++.++.. +++++|+++|-++++++..++|.+..+++++
T Consensus 17 ~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~ 86 (187)
T COG2242 17 MTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVDNL 86 (187)
T ss_pred CcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCCcE
Confidence 677888888888887 889999999999999999999955 6889999999999999999999999987765
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.40 E-value=3.3e-12 Score=75.43 Aligned_cols=47 Identities=28% Similarity=0.592 Sum_probs=41.9
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
|+.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.+++++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~ 47 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAE 47 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHh
Confidence 46799999999999999999964 456899999999999999999944
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.36 E-value=4.1e-12 Score=79.17 Aligned_cols=53 Identities=23% Similarity=0.396 Sum_probs=45.4
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
+++.+|||+|||+|.++..+++...+.++++|+|+|++|++.|+++++..+.+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ 54 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD 54 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc
Confidence 35679999999999999999965456779999999999999999998877654
No 12
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.35 E-value=7e-12 Score=85.79 Aligned_cols=67 Identities=37% Similarity=0.447 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 31 PHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
+......++.+..+..++.+|||+|||+|.++++.++. |. ++|+|+|+++.+++.|++|+..|++..
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-GA-~~v~a~DiDp~Av~~a~~N~~~N~~~~ 211 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-GA-KKVVAIDIDPLAVEAARENAELNGVED 211 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-TB-SEEEEEESSCHHHHHHHHHHHHTT-TT
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEecCCHHHHHHHHHHHHHcCCCe
Confidence 45567778888777788899999999999999999998 45 489999999999999999999998754
No 13
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=8.6e-12 Score=85.10 Aligned_cols=67 Identities=34% Similarity=0.450 Sum_probs=58.7
Q ss_pred hhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 31 PHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
+......++++..+..++.++||+|||+|.++++.++.+ + .+|+|+|+++.+++.++.|++.|+++.
T Consensus 146 HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG-A-~~v~g~DiDp~AV~aa~eNa~~N~v~~ 212 (300)
T COG2264 146 HPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG-A-KKVVGVDIDPQAVEAARENARLNGVEL 212 (300)
T ss_pred ChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC-C-ceEEEecCCHHHHHHHHHHHHHcCCch
Confidence 345566788887778899999999999999999999994 5 479999999999999999999999874
No 14
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.31 E-value=2.5e-11 Score=82.84 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=68.0
Q ss_pred CCCCCcccCCCCCCCCccccccceecChhhHHHHHHHHHhhc--CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCC
Q psy5585 4 VDRGNFCSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHL--ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHI 81 (110)
Q Consensus 4 ~~r~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s 81 (110)
.|-++......+....+.+..+..++.+.....+...+...+ .+..+|||+|||+|.+++.+++.. ++.+|+++|+|
T Consensus 76 ~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis 154 (284)
T TIGR03533 76 IPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDIS 154 (284)
T ss_pred CcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECC
Confidence 344555555566566666666666666655555544443222 345689999999999999999985 55789999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy5585 82 PDLVNSSVKNVEKSHK 97 (110)
Q Consensus 82 ~~~~~~a~~~~~~~~~ 97 (110)
+.+++.|++++..+++
T Consensus 155 ~~al~~A~~n~~~~~~ 170 (284)
T TIGR03533 155 PDALAVAEINIERHGL 170 (284)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999988764
No 15
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=9.1e-12 Score=82.78 Aligned_cols=51 Identities=25% Similarity=0.492 Sum_probs=47.0
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
.++.+|||+|||||..++.+++..+ +++|+++|+|+.|++.++++....+.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~ 100 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGV 100 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCc
Confidence 3789999999999999999999987 79999999999999999999988653
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.29 E-value=1e-11 Score=82.60 Aligned_cols=52 Identities=35% Similarity=0.608 Sum_probs=40.1
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
..++.+|||+|||||.++..+++..+++++|+++|+|+.|++.++++....+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~ 96 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG 96 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC
Confidence 5677899999999999999999987778899999999999999999988754
No 17
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.3e-11 Score=82.84 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=67.9
Q ss_pred CCCCCcccCCCCCCCCccccccceecChhhHHHHHHHHHhhcCCCC-eEEEecCCcChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 4 VDRGNFCSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGK-RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 4 ~~r~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
.|-++......|....+.+..+..++.+.....+-..+. ...... +|||+|||+|.+++.+++.. ++..|+|+|+|+
T Consensus 67 ~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~ 144 (280)
T COG2890 67 EPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISP 144 (280)
T ss_pred CCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCH
Confidence 344454444566666666777777777666554444331 122222 79999999999999999996 557899999999
Q ss_pred HHHHHHHHHHHhhcc
Q psy5585 83 DLVNSSVKNVEKSHK 97 (110)
Q Consensus 83 ~~~~~a~~~~~~~~~ 97 (110)
.+++.|++|+..+++
T Consensus 145 ~Al~~A~~Na~~~~l 159 (280)
T COG2890 145 DALALARENAERNGL 159 (280)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999985
No 18
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.29 E-value=2.8e-11 Score=77.80 Aligned_cols=67 Identities=25% Similarity=0.349 Sum_probs=53.9
Q ss_pred ecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
++...+...++..+. +.++.+|||+|||+|.++..+++.. ++++|+++|+++.+++.+++++..++.
T Consensus 14 ~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~ 80 (187)
T PRK08287 14 MTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC 80 (187)
T ss_pred CchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence 334455555556564 5677899999999999999999985 567899999999999999999887654
No 19
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.28 E-value=2.7e-11 Score=78.49 Aligned_cols=67 Identities=21% Similarity=0.380 Sum_probs=53.2
Q ss_pred ecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
++...+...++..+. ..++.+|||+|||+|.++..+++.. +.++|+++|+|+.+++.+++++...+.
T Consensus 23 ~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~ 89 (196)
T PRK07402 23 LTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGV 89 (196)
T ss_pred CCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 334445445556554 5677899999999999999998874 457899999999999999999987654
No 20
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.26 E-value=5.3e-11 Score=71.14 Aligned_cols=63 Identities=27% Similarity=0.413 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
.+...++..+. +.++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+++++...+.
T Consensus 6 ~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~ 68 (124)
T TIGR02469 6 EVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGV 68 (124)
T ss_pred HHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCC
Confidence 34444555543 55678999999999999999999864 47899999999999999999877653
No 21
>KOG2904|consensus
Probab=99.26 E-value=7.6e-11 Score=79.23 Aligned_cols=102 Identities=17% Similarity=0.265 Sum_probs=79.9
Q ss_pred CcCCCCCcccCCCCCCCCccccccceecChhhHHH---HHHHHHhh-cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEE
Q psy5585 2 NQVDRGNFCSHNPYLDAPQSIGYKVTISAPHMHAH---ALELLREH-LENGKRALDVGSGSGYLTTCMALMMGEHGKAVG 77 (110)
Q Consensus 2 ~~~~r~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~-~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~ 77 (110)
.++|-++......|.+-.+....+..++.++...+ +++.+.+. -.....++|+|||+|.+++.++...+ ++.|++
T Consensus 99 ~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~A 177 (328)
T KOG2904|consen 99 KRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTA 177 (328)
T ss_pred hcCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEE
Confidence 35677888888899998888888888888665544 44444321 12445799999999999999999985 799999
Q ss_pred EeCCHHHHHHHHHHHHhhccccccccceeee
Q psy5585 78 IDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108 (110)
Q Consensus 78 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 108 (110)
+|.|+.++..|.+|++...+. |++..+
T Consensus 178 iD~S~~Ai~La~eN~qr~~l~----g~i~v~ 204 (328)
T KOG2904|consen 178 IDVSKAAIKLAKENAQRLKLS----GRIEVI 204 (328)
T ss_pred EeccHHHHHHHHHHHHHHhhc----CceEEE
Confidence 999999999999999987653 555554
No 22
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.25 E-value=4.4e-11 Score=77.17 Aligned_cols=53 Identities=25% Similarity=0.298 Sum_probs=46.9
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
++++.+|||+|||+|..++.++... +.++|+++|.++.+++.++++++.++.+
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~ 95 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLK 95 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 4557899999999999999999874 5679999999999999999999887764
No 23
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.24 E-value=6e-11 Score=77.03 Aligned_cols=67 Identities=34% Similarity=0.536 Sum_probs=53.9
Q ss_pred ecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
++...+....+..+. +.++.+|||+|||+|.+++.+++..++.++|+++|+++.+++.++++++.++
T Consensus 23 ~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g 89 (198)
T PRK00377 23 MTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG 89 (198)
T ss_pred CCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC
Confidence 344455444444444 6688899999999999999999876666789999999999999999988876
No 24
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.23 E-value=5.6e-11 Score=80.66 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=56.8
Q ss_pred eecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccccc
Q psy5585 27 TISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSG 103 (110)
Q Consensus 27 ~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~ 103 (110)
......+...+++.+. +.++.+|||+|||+|.++..+++.. . +|+++|+|+.|++.+++++...++..+..+
T Consensus 24 fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D 95 (272)
T PRK00274 24 FLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA-A--KVTAVEIDRDLAPILAETFAEDNLTIIEGD 95 (272)
T ss_pred cCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC-C--cEEEEECCHHHHHHHHHhhccCceEEEECh
Confidence 4455667777777775 6677899999999999999999995 3 699999999999999987754445444443
No 25
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.23 E-value=7.3e-11 Score=77.98 Aligned_cols=59 Identities=20% Similarity=0.432 Sum_probs=49.0
Q ss_pred HHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 37 ~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
++..+. +.++.+|||+|||+|..+..+++..++.++|+|+|+++.+++.++++....+.
T Consensus 37 ~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~ 95 (231)
T TIGR02752 37 TMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL 95 (231)
T ss_pred HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC
Confidence 444443 55778999999999999999999876667999999999999999998876543
No 26
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=1e-10 Score=80.66 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=65.2
Q ss_pred CCCCCcccCCCCCCCCccccccceecChhhHHHHHHHHHhhcC-CC-CeEEEecCCcChhHHHHHHHhCCCcEEEEEeCC
Q psy5585 4 VDRGNFCSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLE-NG-KRALDVGSGSGYLTTCMALMMGEHGKAVGIDHI 81 (110)
Q Consensus 4 ~~r~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s 81 (110)
.|-++......|....+.+..+..++.+.....+...+...+. .. .+|||+|||+|.+++.+++.. ++.+|+++|+|
T Consensus 88 ~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis 166 (307)
T PRK11805 88 IPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDIS 166 (307)
T ss_pred ccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCC
Confidence 3444444444555555556555566555555544444432222 22 689999999999999999985 55789999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy5585 82 PDLVNSSVKNVEKSHK 97 (110)
Q Consensus 82 ~~~~~~a~~~~~~~~~ 97 (110)
+.+++.|++++..+++
T Consensus 167 ~~al~~A~~n~~~~~l 182 (307)
T PRK11805 167 PDALAVAEINIERHGL 182 (307)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999988764
No 27
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.22 E-value=8.4e-11 Score=83.56 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=66.2
Q ss_pred CCCCCcccCCCCCCCCccccccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHH
Q psy5585 4 VDRGNFCSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPD 83 (110)
Q Consensus 4 ~~r~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~ 83 (110)
.|-++......|....+.+..+..++.+.... +.+.+...+.++.+|||+|||+|.+++.+++.. +..+|+++|+|+.
T Consensus 209 ePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~-LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ 286 (423)
T PRK14966 209 EPVAYILGVREFYGRRFAVNPNVLIPRPETEH-LVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPP 286 (423)
T ss_pred CCceeEeeeeeecCcEEEeCCCccCCCccHHH-HHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHH
Confidence 45555555566666666666665555544333 444443334556799999999999999999874 5578999999999
Q ss_pred HHHHHHHHHHhhc
Q psy5585 84 LVNSSVKNVEKSH 96 (110)
Q Consensus 84 ~~~~a~~~~~~~~ 96 (110)
+++.|+++++.++
T Consensus 287 ALe~AreNa~~~g 299 (423)
T PRK14966 287 ALETARKNAADLG 299 (423)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998765
No 28
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.21 E-value=1.1e-10 Score=74.23 Aligned_cols=61 Identities=28% Similarity=0.404 Sum_probs=51.6
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 35 ~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
..+++.+. ..+..++||+|||+|.+++.+++.. ++.+|+++|+++.+++.+++++..++++
T Consensus 21 ~lL~~~l~--~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~ 81 (170)
T PF05175_consen 21 RLLLDNLP--KHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLE 81 (170)
T ss_dssp HHHHHHHH--HHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHh--hccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 34555554 2267899999999999999999984 6668999999999999999999998865
No 29
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.21 E-value=1.3e-10 Score=74.59 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=44.7
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
++.+|||+|||+|.++..++... ++++|+++|.|+.+++.++++++.++++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~ 92 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLN 92 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCC
Confidence 47899999999999999998774 5678999999999999999998877643
No 30
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.21 E-value=1e-10 Score=79.02 Aligned_cols=49 Identities=29% Similarity=0.475 Sum_probs=43.3
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
+.++.+|||+|||+|.++..+++..+++++|+|+|+|++|++.|+++..
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~ 119 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQE 119 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh
Confidence 4577899999999999999999887666789999999999999987754
No 31
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3.7e-10 Score=72.29 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=55.5
Q ss_pred cccceecChhhHHHHHHHHHh-hcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 23 GYKVTISAPHMHAHALELLRE-HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
+..++.+...+...++..... ..-.+.+|+|+|||||.+++..+-.. + ..|+++|+++++++.+++|...
T Consensus 20 ~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG-a-~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 20 GLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG-A-SRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred cceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC-C-cEEEEEecCHHHHHHHHHHHHh
Confidence 344566666777776666642 12367789999999999999999984 4 4799999999999999999987
No 32
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.19 E-value=2e-10 Score=76.91 Aligned_cols=59 Identities=17% Similarity=0.327 Sum_probs=47.3
Q ss_pred HHHHHhhcCCCCeEEEecCCcChhHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 38 LELLREHLENGKRALDVGSGSGYLTTCMALMM-GEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 38 ~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
...+...+.++.+|||+|||+|..+..+++.+ .+..+++|+|+|+.|++.|++++...+
T Consensus 47 ~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~ 106 (247)
T PRK15451 47 GMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK 106 (247)
T ss_pred HHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC
Confidence 33333335677899999999999999998853 355789999999999999999987643
No 33
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.19 E-value=1.3e-10 Score=78.14 Aligned_cols=96 Identities=10% Similarity=0.104 Sum_probs=63.6
Q ss_pred CCCCCcccCCCCCCCCccccccceecChhhHHHHHHHHHhhcC---CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeC
Q psy5585 4 VDRGNFCSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLE---NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDH 80 (110)
Q Consensus 4 ~~r~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~ 80 (110)
.|-++......|....+.+..+..+..+ ....+++.+...+. ...+|||+|||+|.+++.+++.. +..+|+++|+
T Consensus 41 ~Pl~yi~g~~~f~g~~~~v~~~vf~pr~-~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDi 118 (251)
T TIGR03704 41 LPLEHVLGWAEFCGLRIAVDPGVFVPRR-RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADI 118 (251)
T ss_pred CCHHHhcccCeEcCeEEEECCCCcCCCc-cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEEC
Confidence 4555555555565555555555444322 22333333322122 23589999999999999999885 3357999999
Q ss_pred CHHHHHHHHHHHHhhcccccc
Q psy5585 81 IPDLVNSSVKNVEKSHKALLD 101 (110)
Q Consensus 81 s~~~~~~a~~~~~~~~~~~~~ 101 (110)
|+.+++.+++|+..++..++.
T Consensus 119 s~~al~~A~~N~~~~~~~~~~ 139 (251)
T TIGR03704 119 DPAAVRCARRNLADAGGTVHE 139 (251)
T ss_pred CHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999887655443
No 34
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.18 E-value=1.8e-10 Score=78.59 Aligned_cols=89 Identities=20% Similarity=0.319 Sum_probs=59.3
Q ss_pred CcccCCCCCCCCccccccceecChhhHHHHHHHHHhhc-CC-CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHH
Q psy5585 8 NFCSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHL-EN-GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLV 85 (110)
Q Consensus 8 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~ 85 (110)
+......|....+.+..+..++.+.....+...+.... .. ..+|||+|||+|.+++.++... ++.+|+++|+|+.++
T Consensus 73 yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al 151 (284)
T TIGR00536 73 YLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDAL 151 (284)
T ss_pred HHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHH
Confidence 33333344444444554444444433333333332111 22 2689999999999999999985 456899999999999
Q ss_pred HHHHHHHHhhcc
Q psy5585 86 NSSVKNVEKSHK 97 (110)
Q Consensus 86 ~~a~~~~~~~~~ 97 (110)
+.|++++..+++
T Consensus 152 ~~a~~n~~~~~~ 163 (284)
T TIGR00536 152 AVAEENAEKNQL 163 (284)
T ss_pred HHHHHHHHHcCC
Confidence 999999987764
No 35
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.16 E-value=1.9e-10 Score=77.97 Aligned_cols=60 Identities=27% Similarity=0.304 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 35 ~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
+.+++.+. +++++++||||||-|.+++.+++..+. +|+|+++|+++.+.++++++..+++
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y~v--~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEYGV--TVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHcCC--EEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 33444454 789999999999999999999999744 7999999999999999999998876
No 36
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.15 E-value=2e-10 Score=74.45 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 35 ~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
..+++.+. ..++.+|||+|||+|.++..+++.. . +|+|+|+|+.+++.++++....++.
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g-~--~V~~iD~s~~~l~~a~~~~~~~~~~ 78 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAG-Y--DVRAWDHNPASIASVLDMKARENLP 78 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCC-C--eEEEEECCHHHHHHHHHHHHHhCCC
Confidence 34455554 4456799999999999999999873 3 6999999999999999888776543
No 37
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.15 E-value=1.8e-10 Score=74.84 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=46.8
Q ss_pred HHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 37 ~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
+++.+. ..++.+|||+|||+|..+..+++.. . +|+|+|+|+.+++.++++....++.
T Consensus 22 l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g-~--~V~gvD~S~~~i~~a~~~~~~~~~~ 78 (197)
T PRK11207 22 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG-F--DVTAWDKNPMSIANLERIKAAENLD 78 (197)
T ss_pred HHHhcc--cCCCCcEEEECCCCCHHHHHHHHCC-C--EEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 444444 4466899999999999999999873 3 6999999999999999988876654
No 38
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.15 E-value=3.2e-10 Score=82.78 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=69.8
Q ss_pred CCCCCcccCCCCCCCCccccccceecChhhHHHHHHHHHhhc-------------------------CCCCeEEEecCCc
Q psy5585 4 VDRGNFCSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHL-------------------------ENGKRALDVGSGS 58 (110)
Q Consensus 4 ~~r~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------------~~~~~vldiGcG~ 58 (110)
.|-++......|....+.+..+..++.+.....+-..+.... .+..+|||+|||+
T Consensus 70 ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~Gs 149 (506)
T PRK01544 70 EPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGS 149 (506)
T ss_pred CCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCch
Confidence 455566666677788888888888888666554433332110 1235899999999
Q ss_pred ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 59 GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 59 G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
|.+++.++... ++.+|+++|+|+.+++.|++++..+++
T Consensus 150 G~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l 187 (506)
T PRK01544 150 GCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEV 187 (506)
T ss_pred hHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 99999999885 457899999999999999999987654
No 39
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.14 E-value=3.1e-10 Score=76.13 Aligned_cols=63 Identities=33% Similarity=0.448 Sum_probs=51.3
Q ss_pred hHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 33 MHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
.....++.+.....++.+|||+|||+|.+++.+++. +. .+|+|+|+|+.+++.|++++..+++
T Consensus 105 tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~~ 167 (250)
T PRK00517 105 TTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNGV 167 (250)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCC
Confidence 344456666544567889999999999999988776 44 3699999999999999999988776
No 40
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.12 E-value=5.1e-10 Score=74.94 Aligned_cols=74 Identities=27% Similarity=0.356 Sum_probs=58.1
Q ss_pred cccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 23 GYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
....++..+.....++..+. +.++++|||.|+|+|.++.++++.+++.|+|+..|+.++.++.|+++++.+++.
T Consensus 18 ~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~ 91 (247)
T PF08704_consen 18 PRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD 91 (247)
T ss_dssp -SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred cCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC
Confidence 34455666777788888887 889999999999999999999999999999999999999999999999998764
No 41
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.12 E-value=5.1e-10 Score=76.56 Aligned_cols=64 Identities=36% Similarity=0.451 Sum_probs=51.3
Q ss_pred hHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 33 MHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
.....++.+.....++.+|||+|||+|.+++.+++. +. .+|+++|+|+.+++.|++++..+++.
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g~-~~V~avDid~~al~~a~~n~~~n~~~ 208 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-GA-AKVVGIDIDPLAVESARKNAELNQVS 208 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCCC
Confidence 344455555544567789999999999999998876 33 47999999999999999999887654
No 42
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.12 E-value=7.5e-10 Score=73.68 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=44.3
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMG-EHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
+.++.+|||+|||+|..+..+++.+. ++++++|+|+|+.|++.|++++...
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~ 102 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY 102 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 45778999999999999999998753 4678999999999999999988764
No 43
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.11 E-value=3.2e-10 Score=66.05 Aligned_cols=45 Identities=27% Similarity=0.578 Sum_probs=36.2
Q ss_pred EEEecCCcChhHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 51 ALDVGSGSGYLTTCMALMM--GEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 51 vldiGcG~G~~~~~l~~~~--~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
|||+|||+|..+..+.+.+ +++.+++++|+|+.|++.++++....
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~ 47 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED 47 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc
Confidence 7999999999999999987 33368999999999999999998764
No 44
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.11 E-value=3.6e-10 Score=76.22 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=57.9
Q ss_pred ceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-hcccccccc
Q psy5585 26 VTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK-SHKALLDSG 103 (110)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~ 103 (110)
..+..+.+...+++.+. +.++.+|||+|||+|.++..+++.. . +|+++|+++.+++.+++++.. .++..+..+
T Consensus 10 nfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~-~--~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D 83 (258)
T PRK14896 10 HFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA-K--KVYAIELDPRLAEFLRDDEIAAGNVEIIEGD 83 (258)
T ss_pred cccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC-C--EEEEEECCHHHHHHHHHHhccCCCEEEEEec
Confidence 34566778888888775 6678899999999999999999983 3 699999999999999988754 234444433
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.09 E-value=5.9e-10 Score=72.65 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=44.5
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
.+..+|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++++...+.
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~ 89 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL 89 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC
Confidence 366799999999999999999985 556899999999999999998876543
No 46
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.09 E-value=1.1e-09 Score=72.89 Aligned_cols=63 Identities=24% Similarity=0.339 Sum_probs=52.1
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 35 ~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
..++..+.. ..+.++|||+|||+|+.++.++...+.+++|+++|+++++++.|+++++.+++.
T Consensus 57 g~~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~ 119 (234)
T PLN02781 57 GLFLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD 119 (234)
T ss_pred HHHHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 334444422 456789999999999999999998777789999999999999999999988764
No 47
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.08 E-value=5.5e-10 Score=78.85 Aligned_cols=49 Identities=29% Similarity=0.310 Sum_probs=44.1
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
..+|||+|||+|.+++.+++.. +..+|+++|+|+.+++.+++++..++.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~ 277 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMP 277 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence 4699999999999999999995 567899999999999999999987753
No 48
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.08 E-value=7.6e-10 Score=73.75 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=43.9
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
...+|||+|||+|..+..++... +..+++|+|+++.+++.+++++...+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~ 136 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL 136 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 44589999999999999999985 456899999999999999999887654
No 49
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.07 E-value=9.9e-10 Score=75.36 Aligned_cols=64 Identities=22% Similarity=0.383 Sum_probs=54.4
Q ss_pred eecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 27 TISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 27 ~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
.+.++.+...+++.+. +.++..|||+|||+|.++..+++.. . +|+++|+|+.+++.+++++...
T Consensus 18 FL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~-~--~V~avEiD~~li~~l~~~~~~~ 81 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA-K--KVIAIEIDPRMVAELKKRFQNS 81 (294)
T ss_pred ccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC-C--cEEEEECCHHHHHHHHHHHHhc
Confidence 4456778888888775 6678899999999999999999984 3 5999999999999999988754
No 50
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.07 E-value=1.7e-09 Score=70.77 Aligned_cols=65 Identities=26% Similarity=0.368 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
.....++..+.. ..+.++||||||++|+.++.+++..+++++|+.+|.+++..+.|+++++..++
T Consensus 31 ~~~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~ 95 (205)
T PF01596_consen 31 PETGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL 95 (205)
T ss_dssp HHHHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC
Confidence 334444554432 44668999999999999999999987789999999999999999999998765
No 51
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.07 E-value=8e-10 Score=73.80 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=46.4
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
.....+|||+|||+|.++++++++. ++.++++||+++++.+.|+++++.++.
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l 93 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPL 93 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcc
Confidence 3457899999999999999999995 447999999999999999999998664
No 52
>PRK05785 hypothetical protein; Provisional
Probab=99.07 E-value=8.5e-10 Score=73.10 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=42.4
Q ss_pred HHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 37 ~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
++..+.....++.+|||+|||||.++..+++.+ ..+|+|+|+|++|++.++++
T Consensus 41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc
Confidence 444443333457899999999999999999885 24799999999999999865
No 53
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.06 E-value=5.1e-10 Score=70.96 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh-ccccccccc
Q psy5585 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS-HKALLDSGR 104 (110)
Q Consensus 35 ~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~ 104 (110)
..+++.+. +.++.+|||+|||+|.++..+++.. ++++++|+++.+++.+++++... ++..+..+.
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~ 68 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDA 68 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECch
Confidence 34445454 5567799999999999999999983 36999999999999999887542 344444443
No 54
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=9.8e-10 Score=73.19 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=63.8
Q ss_pred ccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 24 YKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
...++..+.....+...+. +.++++|+|.|+|+|.++..|+...++.|+|+++|+.++.++.|++|+...++..
T Consensus 73 R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d 146 (256)
T COG2519 73 RRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD 146 (256)
T ss_pred CCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc
Confidence 3445555666777777776 8899999999999999999999999999999999999999999999999976544
No 55
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.06 E-value=9.4e-10 Score=71.88 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=41.6
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
+.++.+|||+|||+|..+..+++.. +..+++|+|+|+.|++.|+++..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~ 88 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP 88 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC
Confidence 5577899999999999999999875 34689999999999999988654
No 56
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.05 E-value=1.1e-09 Score=78.85 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=44.7
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
..++.+|||+|||+|.+++.+++.. . +|+|+|+|+.|++.|++++..++++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~-~--~V~gvD~s~~al~~A~~n~~~~~~~ 345 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA-A--EVVGVEGVEAMVERARENARRNGLD 345 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC-C--EEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3466899999999999999999985 2 6999999999999999999877654
No 57
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.04 E-value=9.1e-10 Score=74.00 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=52.5
Q ss_pred eecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 27 TISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 27 ~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
++..+.+...+++.+. ..++.+|||+|||+|.++..+++.. + +|+++|+++.+++.+++++.
T Consensus 11 fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 11 FLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA-K--KVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred cCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC-C--cEEEEECCHHHHHHHHHHhC
Confidence 4556777777887775 5677899999999999999999996 3 49999999999999988764
No 58
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.04 E-value=8.8e-10 Score=71.40 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=45.2
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
....++||+|||+|.++..+++.. ++.+++|+|+++.+++.|++++...++.
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ 66 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLK 66 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCC
Confidence 355699999999999999999985 5678999999999999999988776543
No 59
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.04 E-value=1.6e-09 Score=71.16 Aligned_cols=48 Identities=25% Similarity=0.350 Sum_probs=41.7
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
.+..+|||+|||+|.++..+++.. . +|+|+|+|+.++..++++....+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~-~--~v~gvD~s~~~i~~a~~~~~~~~ 101 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRG-A--IVKAVDISEQMVQMARNRAQGRD 101 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCC-C--EEEEEECCHHHHHHHHHHHHhcC
Confidence 357899999999999999998862 3 69999999999999999887654
No 60
>PRK04266 fibrillarin; Provisional
Probab=99.04 E-value=2.5e-09 Score=70.87 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=48.3
Q ss_pred hhhHHHHHHHH-HhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 31 PHMHAHALELL-REHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 31 ~~~~~~~~~~l-~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
......++..+ .-.+.++.+|||+|||+|..+..+++..+ .++|+++|+++.|++.+.++++.
T Consensus 55 ~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~ 118 (226)
T PRK04266 55 SKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE 118 (226)
T ss_pred cchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh
Confidence 34444444433 11256888999999999999999999975 57899999999999977766654
No 61
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.02 E-value=1.1e-09 Score=73.53 Aligned_cols=46 Identities=26% Similarity=0.451 Sum_probs=40.3
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
..++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.|++.+++.
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~ 72 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER 72 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc
Confidence 4567899999999999999999985 556899999999999999753
No 62
>PLN02244 tocopherol O-methyltransferase
Probab=99.02 E-value=1.4e-09 Score=76.01 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=42.8
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
.++.+|||+|||+|.++..+++.++ ++|+|+|+|+.+++.++++....+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g 165 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQG 165 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcC
Confidence 4567999999999999999999863 479999999999999999887654
No 63
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.02 E-value=1e-09 Score=70.94 Aligned_cols=57 Identities=23% Similarity=0.234 Sum_probs=44.5
Q ss_pred HHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 37 ~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
+.+.+. ..+..++||+|||.|..+++|++.+ - .|+++|.|+.+++.+++.+...+++
T Consensus 22 v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G-~--~VtAvD~s~~al~~l~~~a~~~~l~ 78 (192)
T PF03848_consen 22 VLEAVP--LLKPGKALDLGCGEGRNALYLASQG-F--DVTAVDISPVALEKLQRLAEEEGLD 78 (192)
T ss_dssp HHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-T
T ss_pred HHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCC-C--eEEEEECCHHHHHHHHHHHhhcCce
Confidence 444443 3456799999999999999999994 4 4999999999999998888777765
No 64
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.01 E-value=1.2e-09 Score=73.27 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=42.2
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
+.++.+|||+|||+|.++..+++.. +.++|+|+|+|+.|++.++++..
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~ 76 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP 76 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC
Confidence 4567899999999999999999985 45689999999999999998764
No 65
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.01 E-value=7.7e-10 Score=75.19 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=42.3
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
++++.+|||||||-|.++..+++..+. +|+|+.+|++..+.++++++..++.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~--~v~gitlS~~Q~~~a~~~~~~~gl~ 111 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGC--HVTGITLSEEQAEYARERIREAGLE 111 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSS
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCc--EEEEEECCHHHHHHHHHHHHhcCCC
Confidence 679999999999999999999999754 7999999999999999999988753
No 66
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.01 E-value=3.5e-09 Score=73.28 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=46.0
Q ss_pred HHHHHHHHHhh-cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 34 HAHALELLREH-LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 34 ~~~~~~~l~~~-~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
...++.++... ..++.+|||+|||+|.++..+++. +. +|+|+|+|+.|++.++++.+..
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g~--~V~gvD~S~~ml~~A~~~~~~~ 189 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-GA--IVSASDISAAMVAEAERRAKEA 189 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-CC--EEEEEECCHHHHHHHHHHHHhc
Confidence 34455555421 125679999999999999999987 33 6999999999999999998754
No 67
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.01 E-value=2.4e-09 Score=71.92 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=42.2
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
.++.+|||+|||+|..+..+++.. . +|+++|+|+.|++.|+++....+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g-~--~v~~vD~s~~~l~~a~~~~~~~g 90 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG-H--QVILCDLSAEMIQRAKQAAEAKG 90 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHhcC
Confidence 456799999999999999999983 3 69999999999999999887654
No 68
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.00 E-value=2.4e-09 Score=74.13 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=43.6
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|+++++.++++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~ 221 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLT 221 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 46799999999999999999973 36999999999999999999887653
No 69
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.00 E-value=2.2e-09 Score=72.67 Aligned_cols=53 Identities=32% Similarity=0.573 Sum_probs=46.3
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
+.++.+|||+|||+|..++.+++..++.++|+++|+++.+++.++++....+.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~ 127 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY 127 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC
Confidence 45788999999999999888888777767899999999999999998876554
No 70
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.99 E-value=2.1e-09 Score=73.47 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=42.5
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
.++.+|||+|||+|..+..+++.. . +|+|+|+|+.+++.+++++...++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g-~--~V~avD~s~~ai~~~~~~~~~~~l 167 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLG-F--DVTAVDINQQSLENLQEIAEKENL 167 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCC-C--EEEEEECCHHHHHHHHHHHHHcCC
Confidence 345699999999999999999873 3 699999999999999999887665
No 71
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.2e-09 Score=73.26 Aligned_cols=52 Identities=27% Similarity=0.284 Sum_probs=47.6
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
...+|+|+|||.|.+++.+++.. ++.+++.+|+|..+++.+++|+..|+++.
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~ 209 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVEN 209 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCc
Confidence 45599999999999999999995 57899999999999999999999998775
No 72
>PLN02476 O-methyltransferase
Probab=98.98 E-value=8.9e-09 Score=70.05 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=49.2
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
..+.++|||+||++|+.++.++...++.++|+++|.+++.++.|+++++..++.
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~ 169 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS 169 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 456789999999999999999998777889999999999999999999998764
No 73
>PRK06202 hypothetical protein; Provisional
Probab=98.98 E-value=1.2e-09 Score=72.46 Aligned_cols=52 Identities=25% Similarity=0.273 Sum_probs=42.0
Q ss_pred CCCCeEEEecCCcChhHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMM---GEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
.+..+|||+|||+|.++..+++.. +++.+|+|+|+|+.|++.++++....++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~ 113 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV 113 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC
Confidence 356799999999999999988753 2345899999999999999988654443
No 74
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.98 E-value=1.1e-09 Score=72.44 Aligned_cols=50 Identities=28% Similarity=0.343 Sum_probs=45.4
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
.++.+|||+|||-|.++..+++.. . .|+|+|.++.+++.|+..+...++.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G-a--~VtgiD~se~~I~~Ak~ha~e~gv~ 107 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG-A--SVTGIDASEKPIEVAKLHALESGVN 107 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC-C--eeEEecCChHHHHHHHHhhhhcccc
Confidence 378899999999999999999994 4 6999999999999999999888775
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.98 E-value=3.4e-09 Score=74.14 Aligned_cols=50 Identities=22% Similarity=0.229 Sum_probs=44.5
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
...+|||+|||+|.++..+++.. +..+|+++|+|+.+++.++++++.+++
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l 245 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL 245 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 34589999999999999999985 556899999999999999999988765
No 76
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.97 E-value=3.3e-09 Score=71.68 Aligned_cols=47 Identities=23% Similarity=0.423 Sum_probs=42.6
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
.+..+|||+|||+|..+..++... ++.+++++|+|+.+++.+++++.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH
Confidence 466799999999999999999996 55789999999999999999987
No 77
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.97 E-value=4.9e-09 Score=70.94 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=49.1
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
+.++.+|||+|||+|..+..++...+..++|+++|+++.+++.++++++..++.+
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~ 123 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN 123 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc
Confidence 5678899999999999999999987666799999999999999999999877543
No 78
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.96 E-value=2.8e-09 Score=75.57 Aligned_cols=48 Identities=27% Similarity=0.357 Sum_probs=42.5
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
+.++.+|||+|||+|.++..+++..+ .+|+|+|+|+++++.++++...
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~ 212 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG 212 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc
Confidence 56888999999999999999998753 4799999999999999998754
No 79
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.96 E-value=4.4e-09 Score=62.42 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=43.1
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
+.+|||+|||+|.+++.+++.. ..+++++|+++..++.++.++...+.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~ 48 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGL 48 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTT
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccC
Confidence 3589999999999999999995 45799999999999999999988755
No 80
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.95 E-value=4.4e-09 Score=75.49 Aligned_cols=51 Identities=27% Similarity=0.374 Sum_probs=44.6
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
+.++.+|||+|||+|.+++.+++.. . +|+|+|+++.+++.|++++..+++.
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~-~--~V~~vE~~~~av~~a~~n~~~~~~~ 340 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA-K--SVVGIEVVPESVEKAQQNAELNGIA 340 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC-C--EEEEEEcCHHHHHHHHHHHHHhCCC
Confidence 3466799999999999999999884 3 6999999999999999999887654
No 81
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.95 E-value=6.5e-09 Score=71.55 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=46.0
Q ss_pred HHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 37 ~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
....+...+.++.+|||+|||+|..+..+++.+....+++++|+|++|++.+.+++..
T Consensus 53 ~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~ 110 (301)
T TIGR03438 53 HADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA 110 (301)
T ss_pred HHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh
Confidence 3333333355678999999999999999999863235799999999999999988765
No 82
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=3.1e-09 Score=71.42 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=61.6
Q ss_pred ceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-hhccccccccc
Q psy5585 26 VTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE-KSHKALLDSGR 104 (110)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~ 104 (110)
..+....+...+.+.+. +.++..|||||+|.|.++..|++... +|+++|+++.++...++.+. ..+++.+..|.
T Consensus 11 nFL~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~Da 85 (259)
T COG0030 11 NFLIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAPYDNLTVINGDA 85 (259)
T ss_pred ccccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcccccceEEEeCch
Confidence 34555677778888776 66788999999999999999999953 49999999999999998885 45677776665
Q ss_pred ee
Q psy5585 105 VL 106 (110)
Q Consensus 105 ~~ 106 (110)
++
T Consensus 86 Lk 87 (259)
T COG0030 86 LK 87 (259)
T ss_pred hc
Confidence 54
No 83
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.94 E-value=5.1e-09 Score=67.38 Aligned_cols=52 Identities=27% Similarity=0.443 Sum_probs=42.8
Q ss_pred hcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5585 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLD 101 (110)
Q Consensus 44 ~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~ 101 (110)
.+.++++|||+|||.|.+...|.+. .+...+|+|++++.+..|. ..+++.++
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv----~rGv~Viq 61 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACV----ARGVSVIQ 61 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHH----HcCCCEEE
Confidence 4678999999999999999888886 3467999999999988887 45555554
No 84
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.94 E-value=2.4e-08 Score=65.06 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
.+...++..+.. ..++.+|||+|||+|.+++.++.+. . .+|+++|.++.+++.++++++.++.+
T Consensus 39 ~v~e~l~~~l~~-~~~~~~vLDl~~GsG~l~l~~lsr~-a-~~V~~vE~~~~a~~~a~~Nl~~~~~~ 102 (199)
T PRK10909 39 RVRETLFNWLAP-VIVDARCLDCFAGSGALGLEALSRY-A-AGATLLEMDRAVAQQLIKNLATLKAG 102 (199)
T ss_pred HHHHHHHHHHhh-hcCCCEEEEcCCCccHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 333445555531 2356799999999999999765553 3 47999999999999999999887653
No 85
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.94 E-value=5.6e-09 Score=66.69 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=45.8
Q ss_pred HHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 37 ~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
+.+.+. ..++.+|||+|||+|.++..+++.. + +|+++|+|+.+++.+++++..++.
T Consensus 11 l~~~l~--~~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~~ 66 (179)
T TIGR00537 11 LEANLR--ELKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNNV 66 (179)
T ss_pred HHHHHH--hcCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcCC
Confidence 344443 3455789999999999999999984 4 699999999999999999877653
No 86
>KOG1541|consensus
Probab=98.94 E-value=3.4e-09 Score=69.50 Aligned_cols=57 Identities=30% Similarity=0.462 Sum_probs=47.2
Q ss_pred cChhhHHHHHHHHHhhcCC--CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 29 SAPHMHAHALELLREHLEN--GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~~--~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
.+..+....++.+. ++. ..-|||||||+|..+..+.... . .++|+|+|+.|++.|.+
T Consensus 32 IQ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~G-h--~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 32 IQAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSG-H--QWIGVDISPSMLEQAVE 90 (270)
T ss_pred ehHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCC-c--eEEeecCCHHHHHHHHH
Confidence 34667777777776 444 5689999999999999999884 4 59999999999999986
No 87
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=6.4e-09 Score=74.96 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=48.3
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
+.++.+|||+|||+|..+..+++..+++++|+++|+++.+++.+++++...++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~ 301 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT 301 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 567789999999999999999998756679999999999999999999887654
No 88
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.93 E-value=7.7e-09 Score=72.65 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhcC-CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 34 HAHALELLREHLE-NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 34 ~~~~~~~l~~~~~-~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
...+++.+...+. .+.++||++||+|.+++.+++... +|+|+|+++.+++.+++|+..++++
T Consensus 183 ~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~ 245 (353)
T TIGR02143 183 NIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNID 245 (353)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3444444433332 234799999999999999999853 6999999999999999999988754
No 89
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.93 E-value=8.2e-09 Score=68.01 Aligned_cols=60 Identities=27% Similarity=0.307 Sum_probs=46.5
Q ss_pred HHHHHHHHhh-cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 35 AHALELLREH-LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 35 ~~~~~~l~~~-~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
..+...+... ..++.+|||+|||+|.++..+++.. . +|+++|+|+.+++.+++++...+.
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~-~--~v~~~D~s~~~i~~a~~~~~~~~~ 110 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG-A--KVVASDISPQMVEEARERAPEAGL 110 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHhcCC
Confidence 3344445421 2456799999999999999999873 3 599999999999999998876543
No 90
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=7.4e-09 Score=74.69 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=47.8
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
..++.+|||+|||+|..+..+++..+..++|+++|+|+.+++.+++++...+++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~ 301 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT 301 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 457789999999999999999988665678999999999999999999887754
No 91
>PRK08317 hypothetical protein; Provisional
Probab=98.92 E-value=7.9e-09 Score=67.98 Aligned_cols=55 Identities=35% Similarity=0.571 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 35 ~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
..+++.+. +.++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++
T Consensus 9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 34445444 66788999999999999999999875667899999999999999887
No 92
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.91 E-value=2.8e-09 Score=69.67 Aligned_cols=51 Identities=25% Similarity=0.449 Sum_probs=44.3
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
+....+|.|+|||+|..+..|++++ +.+.++|+|-|++|++.|.++.....
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~~~ 78 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPDAT 78 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCCCc
Confidence 4466799999999999999999998 56899999999999999987765544
No 93
>PLN02672 methionine S-methyltransferase
Probab=98.91 E-value=1.3e-08 Score=79.51 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=59.4
Q ss_pred CCCCCCccccccceecChhhHHHHHHHHHhhcC---CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 14 PYLDAPQSIGYKVTISAPHMHAHALELLREHLE---NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
.|....+.+..+..++.+..... .+.+..... ++.+|||+|||+|.+++.+++.. ++++|+++|+|+.+++.|++
T Consensus 83 ~F~~l~~~V~p~VLIPRpeTE~l-ve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDWSFTF-YEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred EecCCceeeCCCcccCchhHHHH-HHHHHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 44455555666666666554443 333432111 24689999999999999999986 45689999999999999999
Q ss_pred HHHhhcc
Q psy5585 91 NVEKSHK 97 (110)
Q Consensus 91 ~~~~~~~ 97 (110)
|+..++.
T Consensus 161 Na~~n~l 167 (1082)
T PLN02672 161 NLYLNAL 167 (1082)
T ss_pred HHHHcCc
Confidence 9988653
No 94
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.91 E-value=8.6e-09 Score=70.70 Aligned_cols=61 Identities=16% Similarity=0.292 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
-+...+++.+. +.++..++|.+||.|..+..+++.++++++|+|+|.++.+++.+++++..
T Consensus 6 Vll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 6 VLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred ccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 34556667665 56778999999999999999999986678999999999999999987643
No 95
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=9.8e-09 Score=73.86 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=49.2
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
..++.+|||+|||+|..+..+++..+.+++|+++|+++.+++.+++++...++.+
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~ 304 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS 304 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe
Confidence 5577899999999999999999987666899999999999999999999887643
No 96
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.90 E-value=4.4e-09 Score=70.38 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=38.1
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
+..+|||+|||+|.++..+++.. .+|+++|+|+.|++.++++..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~ 85 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDA 85 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC
Confidence 46799999999999999888763 369999999999999988754
No 97
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=1.2e-08 Score=73.46 Aligned_cols=54 Identities=28% Similarity=0.385 Sum_probs=48.8
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
+.++.+|||+|||+|..+..++...+..++|+++|+++.+++.+++++...+++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~ 288 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS 288 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 567889999999999999999998766789999999999999999999987754
No 98
>KOG1270|consensus
Probab=98.90 E-value=2.1e-09 Score=71.91 Aligned_cols=42 Identities=33% Similarity=0.541 Sum_probs=38.4
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
+++|||+|||+|.++..|++.. . .|+|+|.+++|++.|++..
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-a--~V~GID~s~~~V~vA~~h~ 131 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-A--QVTGIDASDDMVEVANEHK 131 (282)
T ss_pred CceEEEeccCccccchhhHhhC-C--eeEeecccHHHHHHHHHhh
Confidence 4789999999999999999994 4 5999999999999999983
No 99
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.90 E-value=1.9e-08 Score=66.22 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
.....+...+. ....++|||+|++.|+.++.++...+.+++++.+|.++++++.|+++++..++..
T Consensus 46 e~g~~L~~L~~--~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~ 111 (219)
T COG4122 46 ETGALLRLLAR--LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDD 111 (219)
T ss_pred hHHHHHHHHHH--hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcc
Confidence 33333344444 5677899999999999999999998768999999999999999999999988754
No 100
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.89 E-value=1.3e-08 Score=71.75 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHhhcC-CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 32 HMHAHALELLREHLE-NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 32 ~~~~~~~~~l~~~~~-~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
.....+++.+...+. .+.++||++||+|.+++.+++... +|+++|.++.+++.+++|+..++++
T Consensus 190 ~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~ 254 (362)
T PRK05031 190 AVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGID 254 (362)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCC
Confidence 344555555544333 235799999999999999998853 6999999999999999999888764
No 101
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.88 E-value=8e-09 Score=73.05 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHhhc--CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 31 PHMHAHALELLREHL--ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 31 ~~~~~~~~~~l~~~~--~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
......++..+...+ .++.+|||++||+|.+++.++... . +|+|+|+++.+++.++++++.++++
T Consensus 215 ~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~--~v~~vE~~~~av~~a~~N~~~~~~~ 281 (374)
T TIGR02085 215 PKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-T--QLTGIEIESEAIACAQQSAQMLGLD 281 (374)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-C--eEEEEECCHHHHHHHHHHHHHcCCC
Confidence 344444444443322 356799999999999999999763 3 6999999999999999999888753
No 102
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.87 E-value=5.5e-09 Score=59.36 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=38.0
Q ss_pred EEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 52 LDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 52 ldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
||+|||+|..+..+++. +..+|+++|+++++++.++++....++.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~ 45 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVS 45 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCch
Confidence 79999999999999999 3357999999999999999998876654
No 103
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.87 E-value=1e-08 Score=69.41 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 34 HAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 34 ~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
...++..+. +.++.+|||+|||+|..+..+++..+ ++|+++|+|+.+++.++++...
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~~ 97 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNSD 97 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcCc
Confidence 344455444 67888999999999999999987643 4799999999999999987653
No 104
>PRK14967 putative methyltransferase; Provisional
Probab=98.86 E-value=2.6e-08 Score=65.78 Aligned_cols=51 Identities=31% Similarity=0.392 Sum_probs=43.7
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
+.++.+|||+|||+|.++..+++. +. ++++++|+|+.+++.+++++..++.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~-~~v~~vD~s~~~l~~a~~n~~~~~~ 84 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GA-GSVTAVDISRRAVRSARLNALLAGV 84 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHhCC
Confidence 456789999999999999999886 33 4799999999999999999877653
No 105
>PRK14968 putative methyltransferase; Provisional
Probab=98.86 E-value=2.3e-08 Score=63.81 Aligned_cols=58 Identities=31% Similarity=0.358 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 35 ~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
..+.+.+. ..++.+|||+|||+|..+..++.. + .+++++|.|+.+++.+++++..++.
T Consensus 13 ~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~-~--~~v~~~D~s~~~~~~a~~~~~~~~~ 70 (188)
T PRK14968 13 FLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKN-G--KKVVGVDINPYAVECAKCNAKLNNI 70 (188)
T ss_pred HHHHHhhh--ccCCCEEEEEccccCHHHHHHHhh-c--ceEEEEECCHHHHHHHHHHHHHcCC
Confidence 33444444 356779999999999999999998 3 3699999999999999999877654
No 106
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.86 E-value=1.5e-08 Score=71.70 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=46.2
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
..+..+||||||+|..+..+++.. ++..++|+|+++.++..+.+++...++.+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N 173 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN 173 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 345689999999999999999995 66789999999999999999998876544
No 107
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.86 E-value=1.8e-08 Score=70.10 Aligned_cols=65 Identities=28% Similarity=0.356 Sum_probs=51.4
Q ss_pred cChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 29 SAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
..+.+...++.... .+++..|||+|||+|.+++.++.. +. +++|+|+++.|+..++.|++..++.
T Consensus 166 l~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~-~~--~v~g~Di~~~~~~~a~~nl~~~g~~ 230 (329)
T TIGR01177 166 MDPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM-GA--KVIGCDIDWKMVAGARINLEHYGIE 230 (329)
T ss_pred CCHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh-CC--eEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 34555555665554 567889999999999999887765 33 6999999999999999999876654
No 108
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.1e-08 Score=73.48 Aligned_cols=67 Identities=24% Similarity=0.327 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHHhh--cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5585 31 PHMHAHALELLREH--LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 31 ~~~~~~~~~~l~~~--~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
..+...++.....+ ..++.++||+-||.|.+++.+++... +|+|+|+++++++.|++|++.+++++.
T Consensus 275 ~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n~i~N~ 343 (432)
T COG2265 275 PAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAANGIDNV 343 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHcCCCcE
Confidence 34444444444333 34667999999999999999998864 599999999999999999999988753
No 109
>KOG1499|consensus
Probab=98.85 E-value=9.3e-09 Score=71.20 Aligned_cols=52 Identities=25% Similarity=0.220 Sum_probs=45.7
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
+.+++.|||+|||||.++++.++.+ + .+|++||.|.-+ +.|++.+..++++.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG-A-~~V~aVe~S~ia-~~a~~iv~~N~~~~ 109 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG-A-RKVYAVEASSIA-DFARKIVKDNGLED 109 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC-c-ceEEEEechHHH-HHHHHHHHhcCccc
Confidence 5688999999999999999999995 4 489999999655 99999999988765
No 110
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.85 E-value=2.1e-08 Score=71.99 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
.....+...+. +.++.+|||+|||+|..+..+++..+ +++|+++|+++.+++.++++++..++.
T Consensus 225 ~~s~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~ 288 (426)
T TIGR00563 225 ASAQWVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT 288 (426)
T ss_pred HHHHHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 33334444454 56788999999999999999999875 679999999999999999999987764
No 111
>KOG1271|consensus
Probab=98.84 E-value=1.5e-08 Score=64.77 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=44.5
Q ss_pred CeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
.+|||+|||+|.+...|++. +=+++++|+|.|+.+++.|+..++..++++
T Consensus 69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n 118 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSN 118 (227)
T ss_pred cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCc
Confidence 49999999999999999998 455779999999999999998888877764
No 112
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.83 E-value=5.5e-08 Score=65.27 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=48.3
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
..+.++|||+|+++|+.++.++...+++++++.+|.+++..+.|++++...++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~ 129 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV 129 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence 44667999999999999999999887788999999999999999999998775
No 113
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.83 E-value=1.1e-08 Score=70.98 Aligned_cols=45 Identities=27% Similarity=0.513 Sum_probs=38.9
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
++.+|||+|||+|.++..+++. + .+|+|+|.++++++.|+++...
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g--~~V~GID~s~~~i~~Ar~~~~~ 175 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-G--ATVTGVDAVDKNVKIARLHADM 175 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHh
Confidence 4568999999999999999876 3 3699999999999999987654
No 114
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.83 E-value=3e-08 Score=65.40 Aligned_cols=50 Identities=24% Similarity=0.532 Sum_probs=43.5
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
..++.+|||+|||+|..+..++...+.+.+++++|+++.+++.+++++..
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 98 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD 98 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc
Confidence 34568999999999999999999864357899999999999999998765
No 115
>KOG3420|consensus
Probab=98.82 E-value=9.5e-09 Score=63.49 Aligned_cols=74 Identities=22% Similarity=0.360 Sum_probs=59.5
Q ss_pred ccccceecChhhHHHHHHHHHhhc--CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 22 IGYKVTISAPHMHAHALELLREHL--ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
+...++++++.+..-++..+.+.. ..+++++|+|||+|.++++.+-. + +..|+|+|+++++++.+++|.....+
T Consensus 21 ~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~-~-~e~vlGfDIdpeALEIf~rNaeEfEv 96 (185)
T KOG3420|consen 21 LLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP-K-NESVLGFDIDPEALEIFTRNAEEFEV 96 (185)
T ss_pred hhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC-C-CceEEeeecCHHHHHHHhhchHHhhh
Confidence 556678888888888888876432 37889999999999999666655 3 35799999999999999999887544
No 116
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.82 E-value=8.4e-09 Score=72.42 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHhhcC-CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5585 31 PHMHAHALELLREHLE-NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 31 ~~~~~~~~~~l~~~~~-~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
......+++.+...+. ....+||+-||+|.+++.+++.+. +|+|||.++.+++.|++|+..++++++
T Consensus 179 ~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n~ 246 (352)
T PF05958_consen 179 PEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDNV 246 (352)
T ss_dssp HHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--SE
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCcc
Confidence 4455555555544443 234899999999999999999864 499999999999999999999887654
No 117
>PHA03411 putative methyltransferase; Provisional
Probab=98.81 E-value=2.6e-08 Score=67.53 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=48.9
Q ss_pred ccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 24 YKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
.+.+.+...+...+. +. .....+|||+|||+|.+++.++++.+ ..+|+++|+++.+++.++++..
T Consensus 45 ~G~FfTP~~i~~~f~--~~--~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~ 109 (279)
T PHA03411 45 SGAFFTPEGLAWDFT--ID--AHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLP 109 (279)
T ss_pred ceeEcCCHHHHHHHH--hc--cccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCc
Confidence 566777766654332 22 33457999999999999999988742 3579999999999999998753
No 118
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.81 E-value=6.8e-08 Score=62.48 Aligned_cols=64 Identities=19% Similarity=0.080 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
.+...+...+.. ...+.++||++||+|.+++.++.++ . .+|+++|.++.+++.+++|+..++..
T Consensus 35 ~vrea~f~~l~~-~~~g~~vLDLfaGsG~lglea~srg-a-~~v~~vE~~~~a~~~~~~N~~~~~~~ 98 (189)
T TIGR00095 35 VVRELFFNILRP-EIQGAHLLDVFAGSGLLGEEALSRG-A-KVAFLEEDDRKANQTLKENLALLKSG 98 (189)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEecCCCcHHHHHHHhCC-C-CEEEEEeCCHHHHHHHHHHHHHhCCc
Confidence 334444444432 2357899999999999999999994 4 37999999999999999999888653
No 119
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.81 E-value=4.7e-09 Score=69.28 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=38.0
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
+-.++||+|||||..+..+..+... ++|+|+|+.|++.|.++-
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~---ltGvDiS~nMl~kA~eKg 167 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADR---LTGVDISENMLAKAHEKG 167 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhh---ccCCchhHHHHHHHHhcc
Confidence 4579999999999999999999754 999999999999997653
No 120
>KOG2187|consensus
Probab=98.80 E-value=3.2e-09 Score=76.58 Aligned_cols=52 Identities=27% Similarity=0.375 Sum_probs=48.1
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
++.++.++|+.||||.+++++++..++ |+|+|++++++..|+.++..+++++
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~~---ViGvEi~~~aV~dA~~nA~~NgisN 432 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVKR---VIGVEISPDAVEDAEKNAQINGISN 432 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccccc---eeeeecChhhcchhhhcchhcCccc
Confidence 567789999999999999999999765 9999999999999999999998775
No 121
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.80 E-value=3.2e-08 Score=65.21 Aligned_cols=61 Identities=23% Similarity=0.385 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHhhc-CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 32 HMHAHALELLREHL-ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 32 ~~~~~~~~~l~~~~-~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
.+...+++.+.... ....+|||+|||+|..+..+++.+ +..+++++|+++.+++.++++..
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC
Confidence 34444555554221 344689999999999999999985 55679999999999999987764
No 122
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.79 E-value=4.5e-08 Score=66.44 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=38.7
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEH--GKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~ 92 (110)
+..+|||+|||+|..+..+++..+.. .+++|+|+|+.+++.|.++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~ 132 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY 132 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC
Confidence 45689999999999999999875432 26999999999999998764
No 123
>PTZ00146 fibrillarin; Provisional
Probab=98.79 E-value=2.8e-08 Score=67.94 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=38.6
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSS 88 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a 88 (110)
+.++++|||+|||+|..+..+++.++++++|++||+++.+.+..
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dL 173 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDL 173 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHH
Confidence 57889999999999999999999988778999999998755333
No 124
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.79 E-value=5e-08 Score=67.16 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=44.4
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
..+..+|||+|||+|..+..+++.+ ++.+++++|. +.+++.+++++...++
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl 197 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV 197 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCc
Confidence 4566899999999999999999996 6678999997 7899999999887654
No 125
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.78 E-value=2.4e-08 Score=72.41 Aligned_cols=55 Identities=27% Similarity=0.361 Sum_probs=44.4
Q ss_pred HHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 36 ~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
.+++.+. +.++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.|+++...
T Consensus 257 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~ 311 (475)
T PLN02336 257 EFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIG 311 (475)
T ss_pred HHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhc
Confidence 3444443 45678999999999999999998753 4799999999999999887653
No 126
>PHA03412 putative methyltransferase; Provisional
Probab=98.78 E-value=2.9e-08 Score=66.01 Aligned_cols=66 Identities=14% Similarity=0.047 Sum_probs=50.8
Q ss_pred ccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 24 YKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMG--EHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~--~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
.+++.+...+...+... ...+.+|||+|||+|.+++.+++... +..+|+++|+++.+++.|+++..
T Consensus 30 ~GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~ 97 (241)
T PHA03412 30 LGAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP 97 (241)
T ss_pred CCccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence 45677777776655422 22367999999999999999998642 24589999999999999998864
No 127
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.78 E-value=4.5e-08 Score=70.35 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=46.3
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
..++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.++++++..++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~ 293 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL 293 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 56788999999999999999999863 36899999999999999999988664
No 128
>PRK06922 hypothetical protein; Provisional
Probab=98.75 E-value=5.9e-08 Score=72.42 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=42.8
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
.++.+|||+|||+|..+..+++.. ++++++|+|+|+.|++.|+++....
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~ 465 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNE 465 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc
Confidence 367899999999999999999885 5679999999999999999876543
No 129
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.75 E-value=4.9e-10 Score=64.94 Aligned_cols=45 Identities=20% Similarity=0.443 Sum_probs=37.0
Q ss_pred EEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 52 LDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 52 ldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
||+|||+|.++..+.... +..+++++|+|+.|++.+++++.....
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~ 45 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGN 45 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC
Confidence 799999999999999996 667899999999999888888777553
No 130
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.75 E-value=2.8e-08 Score=69.40 Aligned_cols=54 Identities=15% Similarity=0.305 Sum_probs=43.9
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
.++.+|||+|||+|..+..+++..+ ..+|+++|.|+.|++.++++....++.++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~~~i~~i 165 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKII 165 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhccCCeEE
Confidence 3567999999999999999998763 36899999999999999987654444433
No 131
>KOG1540|consensus
Probab=98.75 E-value=5.4e-08 Score=65.15 Aligned_cols=51 Identities=20% Similarity=0.325 Sum_probs=45.1
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCC-----cEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEH-----GKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~-----~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
.+++++||++||||.+++.+.++.+.+ ++|+.+|+|+.|++.++++..+.+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~ 154 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP 154 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC
Confidence 466899999999999999999997553 799999999999999999986643
No 132
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.75 E-value=4.3e-08 Score=64.49 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=36.3
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
.++.+|||+|||.|..+..|+++ |. +|+|+|+|+.+++.+.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G~--~V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-GH--RVLGVELSEIAVEQFF 73 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-CC--eEEEEeCCHHHHHHHH
Confidence 46679999999999999999998 44 5999999999999763
No 133
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.75 E-value=4.6e-08 Score=63.26 Aligned_cols=45 Identities=29% Similarity=0.339 Sum_probs=37.5
Q ss_pred hcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 44 ~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
.++++.+|||+|||+|.++..+++..+ ..++|+|+++++++.+++
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA 54 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH
Confidence 355778999999999999998887643 358999999999998864
No 134
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.74 E-value=4.3e-08 Score=68.02 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=43.5
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh-cc
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS-HK 97 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~ 97 (110)
...++||||||+|.+...++.+. ...+++|+|+++.+++.|++++..+ ++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l 164 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGL 164 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCC
Confidence 45799999999999988888774 4468999999999999999999998 44
No 135
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.74 E-value=4.6e-08 Score=64.33 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=41.6
Q ss_pred CeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
++|||+|||+|..+..+++.. +..+|+|+|+|+++++.+++++...+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl 48 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGL 48 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCC
Confidence 379999999999999999986 446899999999999999998876543
No 136
>PRK00811 spermidine synthase; Provisional
Probab=98.70 E-value=1.6e-07 Score=64.18 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=42.3
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
++..+||++|||+|..+..++++. ...+|++||+++.+++.|++.+...+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~ 124 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIA 124 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhc
Confidence 356799999999999999998873 33579999999999999999886543
No 137
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.69 E-value=9.1e-08 Score=59.40 Aligned_cols=47 Identities=36% Similarity=0.637 Sum_probs=37.7
Q ss_pred HHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHH
Q psy5585 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNS 87 (110)
Q Consensus 38 ~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~ 87 (110)
+..+.....++.+|||+|||+|.++..+++. +. +++|+|+++.+++.
T Consensus 13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~--~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 13 LERLLPRLKPGKRVLDIGCGTGSFLRALAKR-GF--EVTGVDISPQMIEK 59 (161)
T ss_dssp HHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-TS--EEEEEESSHHHHHH
T ss_pred HHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-CC--EEEEEECCHHHHhh
Confidence 3334322467889999999999999999777 34 69999999999887
No 138
>PRK04148 hypothetical protein; Provisional
Probab=98.69 E-value=9.6e-08 Score=58.45 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=36.0
Q ss_pred CCCeEEEecCCcCh-hHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGY-LTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 47 ~~~~vldiGcG~G~-~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
++.+++|+|||+|. .+..|++. +. .|+++|+++..++.++++.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~-G~--~ViaIDi~~~aV~~a~~~~ 59 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES-GF--DVIVIDINEKAVEKAKKLG 59 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC-CC--EEEEEECCHHHHHHHHHhC
Confidence 55789999999996 88888876 44 6999999999998887664
No 139
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.68 E-value=8.4e-08 Score=63.34 Aligned_cols=42 Identities=21% Similarity=0.210 Sum_probs=36.8
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
..++.+|||+|||.|..+..|+.+ |. +|+|||+|+.+++.+.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~-G~--~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ-GH--EVLGVELSELAVEQFF 76 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC-CC--eEEEEccCHHHHHHHH
Confidence 456679999999999999999998 44 5999999999999864
No 140
>KOG0820|consensus
Probab=98.68 E-value=1.2e-07 Score=63.93 Aligned_cols=71 Identities=24% Similarity=0.310 Sum_probs=56.9
Q ss_pred cccccceecC-hhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 21 SIGYKVTISA-PHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 21 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
....++++.. +.+...+++... +++...|||+|.|||.++..+.+.. + +|+++|+++.|+...+++++-..
T Consensus 33 nkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~-k--kVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 33 NKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG-K--KVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred ccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc-C--eEEEEecCcHHHHHHHHHhcCCC
Confidence 3445555444 556666777665 7888999999999999999999995 4 59999999999999999887654
No 141
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.67 E-value=9.9e-08 Score=66.12 Aligned_cols=42 Identities=33% Similarity=0.323 Sum_probs=35.3
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
.++++|||+|||+|.++..++... + .+|+|+|+|+.|+..++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g-~-~~v~GiDpS~~ml~q~~ 161 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHG-A-KSLVGIDPTVLFLCQFE 161 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHH
Confidence 467899999999999999988873 4 37999999999987643
No 142
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.67 E-value=1e-07 Score=66.26 Aligned_cols=43 Identities=30% Similarity=0.310 Sum_probs=35.8
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
.++.+|||+|||+|..+..++... + .+|+|+|.|+.++..++.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-~-~~V~GiD~S~~~l~q~~a 163 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-A-KLVVGIDPSQLFLCQFEA 163 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHH
Confidence 367899999999999999999984 4 369999999998865443
No 143
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.67 E-value=5.9e-08 Score=65.61 Aligned_cols=76 Identities=17% Similarity=0.347 Sum_probs=61.0
Q ss_pred ceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-hhccccccccc
Q psy5585 26 VTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE-KSHKALLDSGR 104 (110)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~ 104 (110)
..+..+.+...+++.+. +.++..|||+|+|.|.++..+++.. . +++++|+++.+++..++++. ..++..+..|.
T Consensus 11 nFL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~-~--~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~ 85 (262)
T PF00398_consen 11 NFLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG-K--RVIAVEIDPDLAKHLKERFASNPNVEVINGDF 85 (262)
T ss_dssp SEEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS-S--EEEEEESSHHHHHHHHHHCTTCSSEEEEES-T
T ss_pred CeeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc-C--cceeecCcHhHHHHHHHHhhhcccceeeecch
Confidence 45667788888888886 6688999999999999999999995 3 69999999999999998776 34455555554
Q ss_pred ee
Q psy5585 105 VL 106 (110)
Q Consensus 105 ~~ 106 (110)
++
T Consensus 86 l~ 87 (262)
T PF00398_consen 86 LK 87 (262)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 144
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.66 E-value=1e-07 Score=58.49 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=42.1
Q ss_pred eEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 50 RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
.+||+|||.|..+..+++.. +.++++++|.++.+.+.++++++.++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~ 47 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNL 47 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCC
Confidence 48999999999999999984 656899999999999999999988764
No 145
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.65 E-value=2e-07 Score=60.90 Aligned_cols=48 Identities=29% Similarity=0.502 Sum_probs=42.0
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
.++.+|||+|||+|..+..+++..+..++++++|+++.+++.++++..
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc
Confidence 467899999999999999999986433689999999999999998765
No 146
>PLN03075 nicotianamine synthase; Provisional
Probab=98.64 E-value=1.9e-07 Score=64.06 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=39.6
Q ss_pred CCCCeEEEecCCcC-hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 46 ENGKRALDVGSGSG-YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 46 ~~~~~vldiGcG~G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
.+..+|+|||||.| ..++.++....++++++++|+++++++.|++.+..
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~ 171 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS 171 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh
Confidence 36789999999965 44555554445778999999999999999999854
No 147
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.63 E-value=6.6e-08 Score=63.43 Aligned_cols=38 Identities=21% Similarity=0.540 Sum_probs=34.1
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
++++.+|||+|||+|..+..+++..++.++|+|+|+++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 46778999999999999999999976667999999996
No 148
>PRK04457 spermidine synthase; Provisional
Probab=98.63 E-value=2.6e-07 Score=62.53 Aligned_cols=48 Identities=15% Similarity=0.325 Sum_probs=42.6
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
.+..+|||+|||+|.++..+++.. +..+++++|+++++++.|++++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~ 112 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFEL 112 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCC
Confidence 356789999999999999999986 567899999999999999988754
No 149
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.62 E-value=2.2e-07 Score=62.95 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=36.5
Q ss_pred CCCeEEEecCCcCh----hHHHHHHHhCC----CcEEEEEeCCHHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGY----LTTCMALMMGE----HGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 47 ~~~~vldiGcG~G~----~~~~l~~~~~~----~~~v~~vD~s~~~~~~a~~~~ 92 (110)
+..+|||+|||+|. +++.+++.++. +.+|+|+|+|+.|++.|++.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 34699999999996 56666665432 458999999999999998754
No 150
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.61 E-value=1.7e-07 Score=71.07 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=45.1
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
.++.+|||+|||+|.+++.+++. +. .+|+++|+|+.+++.+++|+..++++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga-~~V~~vD~s~~al~~a~~N~~~ng~~ 587 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GA-KSTTTVDMSNTYLEWAERNFALNGLS 587 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 35789999999999999999987 43 37999999999999999999988763
No 151
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.61 E-value=5.9e-07 Score=55.45 Aligned_cols=51 Identities=31% Similarity=0.509 Sum_probs=43.7
Q ss_pred CCCCeEEEecCCcChhHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMM---GEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
.+...|+|+|||.|+++..++..+ .++.+|+++|.++..++.+.++.+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 466799999999999999999943 245689999999999999998887766
No 152
>KOG2915|consensus
Probab=98.60 E-value=3.5e-07 Score=61.76 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=62.9
Q ss_pred ccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 24 YKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
...++........++..+. +.++.+|+|-|+|+|.++-++++.+++.|+++..|+.+...+.|++-++.+++
T Consensus 84 hRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 84 HRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred CcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC
Confidence 3344555566677888887 88999999999999999999999999999999999999999999999999874
No 153
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.60 E-value=8.2e-08 Score=61.80 Aligned_cols=40 Identities=23% Similarity=0.465 Sum_probs=34.9
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDL 84 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~ 84 (110)
+.++.+|||+|||+|.++..+++...+.++|+++|+|+.+
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 4678899999999999999999987556789999999854
No 154
>KOG2899|consensus
Probab=98.59 E-value=1.2e-07 Score=63.04 Aligned_cols=56 Identities=32% Similarity=0.520 Sum_probs=46.5
Q ss_pred HHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 38 ~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
+..+.........+|||||.+|.+++.+++.+++ ..|+|+|+++..+..|+++++.
T Consensus 49 Lk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 49 LKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred hhhccccccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence 3334333446678999999999999999999987 4699999999999999988765
No 155
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.59 E-value=2.1e-07 Score=58.76 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=38.6
Q ss_pred eEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 50 RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
.|+|+.||.|..++.+++.+. +|+++|+++..++.|++|++--++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv 46 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGV 46 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-
T ss_pred EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCC
Confidence 699999999999999999974 499999999999999999988775
No 156
>KOG3191|consensus
Probab=98.59 E-value=6.1e-07 Score=57.39 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=47.0
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
...++|||||+|..+.++++..+++..+.++|+++.+++.+.+.++.|++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~ 94 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH 94 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc
Confidence 568999999999999999999988889999999999999999999888765
No 157
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.58 E-value=2e-07 Score=66.44 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=43.6
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
.++.+|||+|||+|.+++.++.. + ..+|+++|+|+.+++.+++|+..++++
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-g-a~~V~~VD~s~~al~~a~~N~~~Ngl~ 269 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEALDIARQNVELNKLD 269 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 46789999999999998877654 3 348999999999999999999998763
No 158
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.57 E-value=4.4e-07 Score=58.20 Aligned_cols=69 Identities=26% Similarity=0.259 Sum_probs=50.8
Q ss_pred eecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcE---------EEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 27 TISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGK---------AVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 27 ~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~---------v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
....+.+...++.... ..++..+||..||+|.+.+..+..... .. ++|+|+++.+++.+++|+...++
T Consensus 10 a~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~-~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~ 86 (179)
T PF01170_consen 10 APLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGAN-IPPLNDINELKIIGSDIDPKAVRGARENLKAAGV 86 (179)
T ss_dssp TSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTT-TSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhC-cccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence 3445666766776665 567789999999999999998887533 33 88999999999999999988765
Q ss_pred c
Q psy5585 98 A 98 (110)
Q Consensus 98 ~ 98 (110)
.
T Consensus 87 ~ 87 (179)
T PF01170_consen 87 E 87 (179)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.56 E-value=4.3e-07 Score=60.13 Aligned_cols=49 Identities=35% Similarity=0.466 Sum_probs=41.4
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
..++.+|||+|||+|.++..+++. +. +++++|+++.+++.+++++...+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~-~~--~v~~iD~s~~~~~~a~~~~~~~~ 94 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL-GA--DVTGIDASEENIEVARLHALESG 94 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc-CC--eEEEEcCCHHHHHHHHHHHHHcC
Confidence 346779999999999999999886 33 69999999999999998876543
No 160
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.56 E-value=4e-07 Score=59.41 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=42.7
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
..++..|+|..||.|.+++.+++.. +.+.|+++|+++.+++..+++++.++++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~ 152 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVEN 152 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TT
T ss_pred CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCC
Confidence 5688999999999999999999963 44579999999999999999999998753
No 161
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.54 E-value=2.5e-07 Score=67.20 Aligned_cols=52 Identities=25% Similarity=0.398 Sum_probs=40.6
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 35 ~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
..++..+. ..++.+|||+|||+|..+..+++.. . +|+|+|+++.+++.+++.
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~-~--~v~giD~s~~~l~~a~~~ 78 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA-G--QVIALDFIESVIKKNESI 78 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC-C--EEEEEeCCHHHHHHHHHH
Confidence 33444443 3356799999999999999999984 3 699999999999887653
No 162
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.54 E-value=2.4e-07 Score=61.56 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=34.3
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNS 87 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~ 87 (110)
++.++||+|||+|.++..+++. +. .+|+++|+++.|+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga-~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GA-KEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHH
Confidence 6679999999999999999998 43 579999999987775
No 163
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.53 E-value=5.1e-07 Score=58.69 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=44.4
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
....+||||||.|...+.+|... ++..++|+|++...+..+.+++...++.++
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv 69 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNV 69 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSE
T ss_pred CCCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccce
Confidence 33489999999999999999995 678999999999999999999988776554
No 164
>KOG3010|consensus
Probab=98.51 E-value=2.9e-07 Score=61.18 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=38.7
Q ss_pred CCCC-eEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 46 ENGK-RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 46 ~~~~-~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
.+++ .++|+|||+|..++.++.++.. |+|+|+|+.|++.+++..+.
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~~ 77 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPPV 77 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCCc
Confidence 3444 8999999999999999999744 99999999999999866543
No 165
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.50 E-value=1.5e-07 Score=60.84 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=37.7
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
.-.++||+|||.|.++..|+.+.. .++++|+|+.+++.|+++....
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~ 88 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGL 88 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT-
T ss_pred ccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCC
Confidence 446899999999999999999964 4999999999999999998763
No 166
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.50 E-value=1e-06 Score=57.87 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhh--cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 32 HMHAHALELLREH--LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 32 ~~~~~~~~~l~~~--~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
....++.+.+... ...+.+|||+|||+|.++..+++.. . +++++|.++.+++.+++++...+.
T Consensus 28 ~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~iD~s~~~~~~a~~~~~~~~~ 92 (224)
T TIGR01983 28 LRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG-A--NVTGIDASEENIEVAKLHAKKDPL 92 (224)
T ss_pred HHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC-C--eEEEEeCCHHHHHHHHHHHHHcCC
Confidence 3445555555421 1246799999999999999888863 3 599999999999999998876543
No 167
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.49 E-value=1.2e-06 Score=56.36 Aligned_cols=70 Identities=20% Similarity=0.144 Sum_probs=52.2
Q ss_pred ecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
++...+.+.+...+....-++.++||+.||+|.+++..+.++ . .+|+.||.++..+...++|++..+...
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG-A-~~v~fVE~~~~a~~~i~~N~~~l~~~~ 92 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG-A-KSVVFVEKNRKAIKIIKKNLEKLGLED 92 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GG
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC-C-CeEEEEECCHHHHHHHHHHHHHhCCCc
Confidence 344566666777776431477899999999999999998884 4 479999999999999999999887543
No 168
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.49 E-value=6.7e-07 Score=57.06 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=39.5
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
..++.+|||+|||+|..++.++... ...+|+..|.++ .++.++.|++.++
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~ 92 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNG 92 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhcc
Confidence 4577899999999999999999994 235799999998 9999999998876
No 169
>KOG1663|consensus
Probab=98.49 E-value=2.1e-06 Score=56.71 Aligned_cols=65 Identities=28% Similarity=0.357 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
.....+...++ +...+++||+|.-||+.+++++..+++.|+|+++|++++..+.+.+..+..+++
T Consensus 60 d~g~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~ 124 (237)
T KOG1663|consen 60 DKGQFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD 124 (237)
T ss_pred HHHHHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc
Confidence 33333444444 456789999999999999999999999999999999999999998888876653
No 170
>KOG1500|consensus
Probab=98.49 E-value=5.1e-07 Score=62.93 Aligned_cols=55 Identities=25% Similarity=0.360 Sum_probs=45.4
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccccccceeee
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 108 (110)
+++.|||+|||+|.++.+.+..+ . .+|++||.| +|.++|++.++.+++ ++|+..+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A-~~vYAvEAS-~MAqyA~~Lv~~N~~----~~rItVI 231 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-A-KKVYAVEAS-EMAQYARKLVASNNL----ADRITVI 231 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-c-ceEEEEehh-HHHHHHHHHHhcCCc----cceEEEc
Confidence 67899999999999999999995 4 489999998 799999988887743 3555544
No 171
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.48 E-value=6.2e-07 Score=61.80 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=52.7
Q ss_pred cccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 23 GYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMM------GEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~------~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
..|.+.++..+...+...+. ..++.+|+|.+||+|.+...+.+.+ ....+++|+|+++.++..|.-+...++
T Consensus 24 ~~G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 24 KLGQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp SCGGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred ccceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 34566777888888888885 5667789999999999999988853 134689999999999999988776554
No 172
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.45 E-value=1.8e-06 Score=61.43 Aligned_cols=51 Identities=31% Similarity=0.178 Sum_probs=44.7
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
+.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.++++.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~ 108 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLEN 108 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 35899999999999999998755 2479999999999999999999887653
No 173
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.42 E-value=8.7e-07 Score=58.54 Aligned_cols=43 Identities=33% Similarity=0.550 Sum_probs=36.9
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
..++.+||+.|||.|.....|++. |. +|+|+|+|+.+++.+.+
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~-G~--~VvGvDls~~Ai~~~~~ 77 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ-GH--DVVGVDLSPTAIEQAFE 77 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT-TE--EEEEEES-HHHHHHHHH
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC-CC--eEEEEecCHHHHHHHHH
Confidence 566779999999999999999998 44 59999999999999843
No 174
>PLN02366 spermidine synthase
Probab=98.42 E-value=3.4e-06 Score=58.42 Aligned_cols=61 Identities=23% Similarity=0.118 Sum_probs=46.6
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccccccceeee
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 108 (110)
++..+||++|||.|..+..++++ +.-.+|+.||+++.+++.|++.+...+. .+...+++++
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~vi 150 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVNLH 150 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceEEE
Confidence 46689999999999999999987 3335799999999999999998865322 1233445443
No 175
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.40 E-value=3.4e-06 Score=57.29 Aligned_cols=48 Identities=23% Similarity=0.168 Sum_probs=40.7
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
...+||++|||+|..+..+++.. ...+++++|+++.+++.+++.+...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~ 119 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSL 119 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhh
Confidence 44699999999999999888873 3457999999999999999987654
No 176
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.39 E-value=3e-06 Score=58.25 Aligned_cols=39 Identities=33% Similarity=0.484 Sum_probs=33.3
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNS 87 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~ 87 (110)
.+++|||||||+|+.+..+++.. + ..|+|+|.+....-.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G-A-~~ViGiDP~~lf~~Q 153 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG-A-KSVIGIDPSPLFYLQ 153 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC-C-CEEEEECCChHHHHH
Confidence 78899999999999999999994 4 479999999865443
No 177
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.38 E-value=1.9e-06 Score=57.15 Aligned_cols=43 Identities=16% Similarity=0.048 Sum_probs=37.6
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
..++.+||++|||.|.....|+..+ . +|+|+|+|+.+++.+.+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G-~--~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKG-V--KVIGIELSEKAVLSFFS 83 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCC-C--cEEEEecCHHHHHHHHH
Confidence 3456899999999999999999994 4 49999999999998855
No 178
>PRK03612 spermidine synthase; Provisional
Probab=98.37 E-value=2.9e-06 Score=62.50 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=38.9
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
++.++|||+|||+|..+..++++ +...+|+++|+|+++++.++++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~ 340 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTS 340 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhC
Confidence 45679999999999999999886 3335899999999999999984
No 179
>PRK01581 speE spermidine synthase; Validated
Probab=98.37 E-value=3.1e-06 Score=59.67 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=38.3
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
....+||++|||+|..+..+++. ++..+|++||+++++++.|++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHh
Confidence 45679999999999999888887 344689999999999999996
No 180
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.34 E-value=3.7e-06 Score=55.11 Aligned_cols=60 Identities=30% Similarity=0.425 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
.....+++.+. +.++..++|+|||.|...+..+-..+. .+++|||+.+...+.|+.....
T Consensus 29 ~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~-~~~~GIEi~~~~~~~a~~~~~~ 88 (205)
T PF08123_consen 29 EFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGC-KKSVGIEILPELHDLAEELLEE 88 (205)
T ss_dssp HHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCC-cEEEEEEechHHHHHHHHHHHH
Confidence 34444555554 678899999999999998888877643 3599999999998888765543
No 181
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.30 E-value=2.8e-06 Score=48.02 Aligned_cols=40 Identities=30% Similarity=0.466 Sum_probs=34.3
Q ss_pred eEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 50 RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
+++|+|||.|..+..+++. ...+++++|.++..+..+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~ 40 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKA 40 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHH
Confidence 4899999999999999883 346899999999999988853
No 182
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.29 E-value=6.1e-06 Score=58.78 Aligned_cols=56 Identities=23% Similarity=0.176 Sum_probs=48.0
Q ss_pred HHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 40 LLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 40 ~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
++..... +++|||+-|-||.+++..+..+ + .+|++||.|...++.|++|+..|+++
T Consensus 211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gG-A-~~vt~VD~S~~al~~a~~N~~LNg~~ 266 (393)
T COG1092 211 ALGELAA-GKRVLNLFSYTGGFSVHAALGG-A-SEVTSVDLSKRALEWARENAELNGLD 266 (393)
T ss_pred HHhhhcc-CCeEEEecccCcHHHHHHHhcC-C-CceEEEeccHHHHHHHHHHHHhcCCC
Confidence 3433344 8999999999999999999984 4 47999999999999999999999875
No 183
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.28 E-value=2e-06 Score=60.00 Aligned_cols=65 Identities=25% Similarity=0.336 Sum_probs=54.6
Q ss_pred cChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 29 SAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
..+...+.+..... ..++..|||.-||||.+.+.+.-. |. +++|+|++..|+.-|+.|+..-+++
T Consensus 181 ~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~-G~--~viG~Did~~mv~gak~Nl~~y~i~ 245 (347)
T COG1041 181 MDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLM-GA--RVIGSDIDERMVRGAKINLEYYGIE 245 (347)
T ss_pred cCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhc-Cc--eEeecchHHHHHhhhhhhhhhhCcC
Confidence 34666666777666 788899999999999999998888 44 5999999999999999999987643
No 184
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.28 E-value=3.9e-06 Score=61.83 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=56.8
Q ss_pred ccceecChhhHHHHHHHHHhhcC-----CCCeEEEecCCcChhHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHH
Q psy5585 24 YKVTISAPHMHAHALELLREHLE-----NGKRALDVGSGSGYLTTCMALMMGE-------HGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~~-----~~~~vldiGcG~G~~~~~l~~~~~~-------~~~v~~vD~s~~~~~~a~~~ 91 (110)
.|+..++..+...+++.+..... ...+|||.|||+|.+...++..... ...++|+|+++.++..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 35667788888888887743221 3458999999999999999987631 24689999999999999988
Q ss_pred HHhhc
Q psy5585 92 VEKSH 96 (110)
Q Consensus 92 ~~~~~ 96 (110)
+...+
T Consensus 83 l~~~~ 87 (524)
T TIGR02987 83 LGEFA 87 (524)
T ss_pred HhhcC
Confidence 76654
No 185
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.26 E-value=3.6e-06 Score=55.91 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=45.1
Q ss_pred CeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
..+||||||.|...+.+|+.- |+..++|||+....+..|.+.+...++++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~N 99 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKN 99 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCc
Confidence 489999999999999999995 66789999999999999999999887743
No 186
>KOG3115|consensus
Probab=98.25 E-value=2.1e-06 Score=55.91 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=60.6
Q ss_pred CCCCCcccC----CCCCCCCccccccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEe
Q psy5585 4 VDRGNFCSH----NPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79 (110)
Q Consensus 4 ~~r~~~~~~----~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD 79 (110)
.|+.+|+.. ++..|..+++........ +...+-.+.....+...+.|||||-|.+.+.|+..+ ++--++|.|
T Consensus 16 ~pqKr~YRQRAHsNP~sDh~l~yPvsP~~mD---WS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmE 91 (249)
T KOG3115|consen 16 LPQKRYYRQRAHSNPLSDHTLEYPVSPQEMD---WSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKF-PDTLILGME 91 (249)
T ss_pred CcHHHHHHHHhhcCCCccCcccCCCChHhCc---HHHhhhhhhhhccccceEEeeccCccchhhhccccC-ccceeeeeh
Confidence 355666644 366666665543322211 111222222223455689999999999999999998 556799999
Q ss_pred CCHHHHHHHHHHHHhhc
Q psy5585 80 HIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 80 ~s~~~~~~a~~~~~~~~ 96 (110)
+.....++.+.+++..+
T Consensus 92 IR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 92 IRDKVSDYVKERIQALR 108 (249)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 99999999999998765
No 187
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.23 E-value=1.3e-05 Score=58.13 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=41.6
Q ss_pred CCeEEEecCCcChhHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHhhccccccccceeeec
Q psy5585 48 GKRALDVGSGSGYLTTCMALMM---GEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLVS 109 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 109 (110)
+..|+|+|||+|-++.+.++.+ +...+|++||.|+.++...++.++.++. .+++++++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~ 247 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIH 247 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEe
Confidence 4689999999999988777653 2235899999999988887777666653 24455543
No 188
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.22 E-value=1.2e-05 Score=58.68 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=51.0
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
..++.+|||+|||.|.-+..++...+.++.|+++|+++..++..++++...++.++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv 166 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNV 166 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeE
Confidence 46889999999999999999999987778999999999999999999999887653
No 189
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.20 E-value=6.5e-06 Score=57.54 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=36.7
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
++..|||+|||.|....-+... +. .+++|+|+++..++.|+++...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i-~~~vg~Dis~~si~ea~~Ry~~ 107 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KI-KHYVGIDISEESIEEARERYKQ 107 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhc-CC-CEEEEEeCCHHHHHHHHHHHHH
Confidence 6789999999999988888776 33 5799999999999999999843
No 190
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.18 E-value=1.7e-05 Score=54.88 Aligned_cols=61 Identities=18% Similarity=0.296 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 31 PHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
+-+...+++.+. +.++..++|.-+|.|..+..+++..+ +++|+|+|.++.+++.+++....
T Consensus 6 pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 6 SVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred chhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhh
Confidence 345556677665 56788999999999999999999875 48999999999999999988754
No 191
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.10 E-value=2.9e-05 Score=59.18 Aligned_cols=73 Identities=25% Similarity=0.204 Sum_probs=54.7
Q ss_pred cceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhC----------------------------------
Q psy5585 25 KVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMG---------------------------------- 70 (110)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~---------------------------------- 70 (110)
+.....+.+...++.... +..++..++|.+||+|.+.+..+....
T Consensus 169 ~~Apl~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~ 247 (702)
T PRK11783 169 GEAPLKENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQER 247 (702)
T ss_pred CCCCCcHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 344455677776776543 224568999999999999988876311
Q ss_pred -------CCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 71 -------EHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 71 -------~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
...+++|+|+++.+++.|++|+..+++.
T Consensus 248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~ 282 (702)
T PRK11783 248 ARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVA 282 (702)
T ss_pred HhhcccccCceEEEEECCHHHHHHHHHHHHHcCCC
Confidence 1236999999999999999999998764
No 192
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.09 E-value=2.1e-05 Score=55.69 Aligned_cols=83 Identities=17% Similarity=0.095 Sum_probs=63.2
Q ss_pred CCCCCCccccccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCC----------------------
Q psy5585 14 PYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGE---------------------- 71 (110)
Q Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~---------------------- 71 (110)
+.....+....+.....+.+...++.... -.++..++|.-||+|.+.+..+-....
T Consensus 160 sLhkRGyR~~~g~ApLketLAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw 237 (381)
T COG0116 160 SLHKRGYRVYDGPAPLKETLAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLW 237 (381)
T ss_pred chhhccccccCCCCCchHHHHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHH
Confidence 44445555666666677777777777665 345579999999999999998887421
Q ss_pred ---------Cc-------EEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 72 ---------HG-------KAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 72 ---------~~-------~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
++ .++|+|+++.+++.|+.|++..++.
T Consensus 238 ~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~ 280 (381)
T COG0116 238 DKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVG 280 (381)
T ss_pred HHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCC
Confidence 11 3789999999999999999998875
No 193
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.08 E-value=7.8e-06 Score=53.71 Aligned_cols=72 Identities=21% Similarity=0.223 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHhhcC--CCCeEEEecCCcChhHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccccc
Q psy5585 32 HMHAHALELLREHLE--NGKRALDVGSGSGYLTTCMALMMGEH-GKAVGIDHIPDLVNSSVKNVEKSHKALLDSG 103 (110)
Q Consensus 32 ~~~~~~~~~l~~~~~--~~~~vldiGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~ 103 (110)
.....+.+....++. ..-.++|.+||.|++...+.-..+.+ ..|++.|+++++++.|++|......+.+++-
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R 108 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEAR 108 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHH
Confidence 344445555433332 33489999999999887776653322 2699999999999999999988776666543
No 194
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.06 E-value=1.8e-05 Score=55.37 Aligned_cols=53 Identities=25% Similarity=0.259 Sum_probs=47.8
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
..++..|+|.-+|.|.+++.+++...+ .|+++|+++.++++.++|++.|++..
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~ 238 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEG 238 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccc
Confidence 456899999999999999999999543 49999999999999999999998875
No 195
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.04 E-value=3.3e-05 Score=53.02 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=45.6
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccccccceeee
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 108 (110)
.++++|||+-|-||.++++.+.. ++ .+|++||.|..+++.+++|+..|+++ .++.+++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA-~~v~~VD~S~~al~~a~~N~~lNg~~---~~~~~~~ 179 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GA-KEVVSVDSSKRALEWAKENAALNGLD---LDRHRFI 179 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TE-SEEEEEES-HHHHHHHHHHHHHTT-C---CTCEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEE
Confidence 46789999999999999998876 44 47999999999999999999999864 2344444
No 196
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.01 E-value=3.5e-05 Score=50.36 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=51.2
Q ss_pred HHHHHHHhhcCCCCe-EEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5585 36 HALELLREHLENGKR-ALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 36 ~~~~~l~~~~~~~~~-vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
-|++.|..++.+... |||||||||-.+..+++.+ +.....-.|.++......+..+...+..++
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv 77 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNV 77 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCccc
Confidence 356666655665555 9999999999999999998 557889999999998888877777766655
No 197
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.01 E-value=7.9e-05 Score=48.07 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=52.9
Q ss_pred cChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 29 SAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
+...+.+.+..++...-..+.++||+-+|+|.+++..+.+. . .+++.||.+...+...++|++..+.
T Consensus 25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A-~~~~~vE~~~~a~~~l~~N~~~l~~ 91 (187)
T COG0742 25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-A-ARVVFVEKDRKAVKILKENLKALGL 91 (187)
T ss_pred CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-C-ceEEEEecCHHHHHHHHHHHHHhCC
Confidence 33455555666665311367899999999999999999994 4 4799999999999999999888763
No 198
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.00 E-value=2.7e-05 Score=49.41 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=58.6
Q ss_pred CCCCCCccccccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 14 PYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
.|.+.+..+|.- ..++....+.+...+. ...+.-|||+|.|||.++.+++++.-++..++++|.|++.+....+...
T Consensus 18 ~wi~~PrtVGaI-~PsSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p 94 (194)
T COG3963 18 GWIDNPRTVGAI-LPSSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP 94 (194)
T ss_pred HHhcCCceeeee-cCCcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC
Confidence 455666665532 2334444454555443 4466689999999999999999997777899999999999998888776
Q ss_pred hhc
Q psy5585 94 KSH 96 (110)
Q Consensus 94 ~~~ 96 (110)
..+
T Consensus 95 ~~~ 97 (194)
T COG3963 95 GVN 97 (194)
T ss_pred Ccc
Confidence 654
No 199
>PLN02823 spermine synthase
Probab=97.98 E-value=7.2e-05 Score=52.49 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=45.6
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccccccceeee
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 108 (110)
...+||.+|+|.|..+..+++.. ...+|+.||+++.+++.|++.+...+- .....+++++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~-~~~dprv~v~ 162 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE-AFCDKRLELI 162 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc-cccCCceEEE
Confidence 55799999999999999888863 335799999999999999998765332 1233455443
No 200
>KOG4300|consensus
Probab=97.98 E-value=1.4e-05 Score=52.35 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=38.5
Q ss_pred CeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
..+||+|||||...-+.--. +...|+++|.++.|-+.+.+.++.....
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~ 125 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPL 125 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCc
Confidence 46899999999886655432 4457999999999999999998886543
No 201
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.91 E-value=4e-05 Score=56.45 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=45.1
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
....+||||||.|.+...+|... ++..++|+|++...+..+.+.....++.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~ 399 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNF 399 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeE
Confidence 45689999999999999999995 667899999999999988888777665544
No 202
>PRK11524 putative methyltransferase; Provisional
Probab=97.91 E-value=9.2e-05 Score=50.72 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=41.8
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
..++..|||.-+|+|..+++..+. +. +.+|+|++++.++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~l-gR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKAS-GR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHc-CC--CEEEEeCCHHHHHHHHHHHHh
Confidence 568899999999999999998888 44 499999999999999999754
No 203
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.90 E-value=6e-05 Score=51.43 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=41.5
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
...+|||+|||.|..+.++...++.-.+++++|.|+.|++.++..+...
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 5579999999999998888888765558999999999999998776543
No 204
>KOG2361|consensus
Probab=97.90 E-value=9.5e-06 Score=54.09 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=38.8
Q ss_pred eEEEecCCcChhHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHh
Q psy5585 50 RALDVGSGSGYLTTCMALMMGEH--GKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
+|||+|||.|.....+.+.. ++ -+|+++|.|+.+++..+++...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~ 119 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGY 119 (264)
T ss_pred hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhcccc
Confidence 79999999999999999984 54 6899999999999999876644
No 205
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.90 E-value=0.00013 Score=51.89 Aligned_cols=50 Identities=24% Similarity=0.112 Sum_probs=43.3
Q ss_pred CeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
-+|||+.||+|..++.++...+.-.+|+++|+++.+++.+++|++.++..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~ 95 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE 95 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 48999999999999999998421247999999999999999999988754
No 206
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.87 E-value=0.00017 Score=49.46 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=50.5
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
..++..|||.+++.|.-+..++.....++.++++|+++.-+...+++.+..++.++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v 138 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNV 138 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceE
Confidence 56788999999999999999999987789999999999999999999999887765
No 207
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.84 E-value=0.00011 Score=47.90 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 31 PHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
..+...++... ..++..|||.-||+|..+.+..+. +. +.+|+|++++.++.|++
T Consensus 178 ~~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l-~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEEL-GR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHT-T---EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhh---hccceeeehhhhccChHHHHHHHc-CC--eEEEEeCCHHHHHHhcC
Confidence 33444444433 578899999999999999999888 45 59999999999999874
No 208
>PHA01634 hypothetical protein
Probab=97.82 E-value=8.9e-05 Score=45.11 Aligned_cols=48 Identities=13% Similarity=-0.009 Sum_probs=43.0
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
.+++|+|+|.+.|..++.++-+. + .+|+++|.++...+..+++++.++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-A-K~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-A-SFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-c-cEEEEeccCHHHHHHHHHHhhhhe
Confidence 67899999999999999999984 4 489999999999999999888774
No 209
>KOG2730|consensus
Probab=97.81 E-value=6e-05 Score=49.85 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=56.1
Q ss_pred ecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccccccceee
Q psy5585 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLL 107 (110)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 107 (110)
.+.+.+...+........ ...+|+|.-||.|..++..+..+.+ |+++|+++.-+..|++|++--++. +|++|
T Consensus 76 vTpe~ia~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~----~rItF 147 (263)
T KOG2730|consen 76 VTPEKIAEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVP----DRITF 147 (263)
T ss_pred eccHHHHHHHHHHHHHhc-CcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCC----ceeEE
Confidence 344555555555554323 5678999999999999999998644 999999999999999998887764 36776
Q ss_pred ec
Q psy5585 108 VS 109 (110)
Q Consensus 108 ~~ 109 (110)
++
T Consensus 148 I~ 149 (263)
T KOG2730|consen 148 IC 149 (263)
T ss_pred Ee
Confidence 64
No 210
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.78 E-value=0.00011 Score=49.70 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=35.1
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
...++||||+|.|..+..++..+.. |++.|.|..|....+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~ 133 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLS 133 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHH
Confidence 4568999999999999999999855 999999999966655
No 211
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.77 E-value=4.5e-05 Score=49.40 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=42.0
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
....+.|+|+|+|-++...+++. . +|+++|.++.....+.+|+.-.+..+
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A-~--rViAiE~dPk~a~~a~eN~~v~g~~n 81 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAA-E--RVIAIEKDPKRARLAEENLHVPGDVN 81 (252)
T ss_pred hhhceeeccCCcchHHHHHHhhh-c--eEEEEecCcHHHHHhhhcCCCCCCcc
Confidence 44789999999999999999984 3 59999999999999999975554433
No 212
>PRK13699 putative methylase; Provisional
Probab=97.77 E-value=0.00026 Score=47.13 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=42.9
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
..++..|||.-||+|..+.+..+.. . +.+|+|++++..+.+.+++....
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~-r--~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSG-R--RYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcC-C--CEEEEecCHHHHHHHHHHHHHHH
Confidence 5688899999999999999988874 4 49999999999999999987654
No 213
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.73 E-value=0.00014 Score=47.75 Aligned_cols=46 Identities=24% Similarity=0.365 Sum_probs=40.3
Q ss_pred EEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 51 ALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 51 vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
|+|+||--|++.+.|.+.. .-.+++++|+++..++.|++++...++
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l 46 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGL 46 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 6899999999999999994 546899999999999999999998774
No 214
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.67 E-value=0.00047 Score=48.12 Aligned_cols=56 Identities=9% Similarity=0.108 Sum_probs=43.3
Q ss_pred HHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHH
Q psy5585 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGE---HGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 38 ~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~---~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
...+...+.++..++|+|||+|.-+..|++.+.+ ...++++|+|.++++.+..++.
T Consensus 67 ~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 67 SSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred HHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence 3334334567779999999999887777776532 2469999999999999998887
No 215
>KOG1975|consensus
Probab=97.65 E-value=0.00011 Score=51.06 Aligned_cols=50 Identities=24% Similarity=0.237 Sum_probs=42.6
Q ss_pred hcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 44 ~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
+.++...++|+|||.|...+-+-+.. . ++++|+|+.+..++-|+++.+..
T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kAg-I-~~~igiDIAevSI~qa~~RYrdm 163 (389)
T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKAG-I-GEYIGIDIAEVSINQARKRYRDM 163 (389)
T ss_pred HhccccccceeccCCcccHhHhhhhc-c-cceEeeehhhccHHHHHHHHHHH
Confidence 45688899999999999988888773 4 47999999999999999888753
No 216
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.65 E-value=0.00022 Score=47.25 Aligned_cols=48 Identities=25% Similarity=0.479 Sum_probs=39.0
Q ss_pred hcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCH----HHHHHHHHH
Q psy5585 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP----DLVNSSVKN 91 (110)
Q Consensus 44 ~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~----~~~~~a~~~ 91 (110)
+++++.+||-+|+++|.....++...+++|.|++||.|+ +++..|+++
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R 121 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR 121 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC
Confidence 467899999999999999999999999899999999999 445555543
No 217
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.65 E-value=0.0002 Score=47.74 Aligned_cols=43 Identities=26% Similarity=0.404 Sum_probs=35.6
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
.+..+|+|||.|+|..+..+++.. |+.+++.+|. +..++.+++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~ 141 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE 141 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH
T ss_pred cCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc
Confidence 455789999999999999999996 6789999999 777888776
No 218
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.65 E-value=0.00064 Score=45.77 Aligned_cols=61 Identities=23% Similarity=0.265 Sum_probs=46.0
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccccccceeee
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 108 (110)
++..+||-||-|.|..+..+.+.. +-.+++.||+++..++.|++.+...... ....|++++
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~ 135 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRII 135 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEE
Confidence 467899999999999999999873 3458999999999999999988765433 444555553
No 219
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.64 E-value=0.00029 Score=48.64 Aligned_cols=56 Identities=25% Similarity=0.340 Sum_probs=37.7
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh-ccccccccceeee
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS-HKALLDSGRVLLV 108 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~ 108 (110)
..++||||||.-.+--.|..+. ..-+++|.|+++..++.|++++..+ ++ +++++++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L----~~~I~l~ 159 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNL----ESRIELR 159 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhcccc----ccceEEE
Confidence 4579999999876654444442 2347999999999999999999998 44 3455543
No 220
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=0.00067 Score=46.82 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
-+....++.|. ..++...+|.--|.|..+.++++.++..++++|+|.++.+++.|++.....+
T Consensus 10 VLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~ 72 (314)
T COG0275 10 VLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD 72 (314)
T ss_pred hHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence 34555667776 6788999999999999999999998777889999999999999998886643
No 221
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.60 E-value=0.00057 Score=44.15 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=42.4
Q ss_pred eEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5585 50 RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
+++|+|+|.|.-++.++=.. ++.+++.+|.+..-+...+..+...+++++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv 100 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNV 100 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSE
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCE
Confidence 89999999999999999996 678999999999888888888887776644
No 222
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.58 E-value=0.00019 Score=49.76 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 31 PHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
+-+...+++.+. ..++..++|.-.|.|..+.++++..++ ++++|+|.++.+++.+++++.
T Consensus 6 PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~ 65 (310)
T PF01795_consen 6 PVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLK 65 (310)
T ss_dssp -TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTC
T ss_pred cccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHh
Confidence 345566777776 678889999999999999999999755 999999999999999987655
No 223
>KOG1501|consensus
Probab=97.50 E-value=0.0003 Score=50.97 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=44.6
Q ss_pred eEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccccccceeeec
Q psy5585 50 RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLVS 109 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 109 (110)
-+||+|+|||.+++...+.+ .+ .|+++|.=.-|.+.|++...+++.+ ++++++.
T Consensus 69 ~vLdigtGTGLLSmMAvrag-aD-~vtA~EvfkPM~d~arkI~~kng~S----dkI~vIn 122 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-AD-SVTACEVFKPMVDLARKIMHKNGMS----DKINVIN 122 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-CC-eEEeehhhchHHHHHHHHHhcCCCc----cceeeec
Confidence 48999999999999999985 43 5999999999999999998887753 4555543
No 224
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.46 E-value=8.4e-05 Score=48.28 Aligned_cols=51 Identities=29% Similarity=0.363 Sum_probs=45.3
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
.+++|||+|+|+|..+++.++.+ . ..|++.|+.+..+...+.|++.+++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A-~~v~a~d~~P~~~~ai~lNa~angv~i 129 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-A-AEVVAADIDPWLEQAIRLNAAANGVSI 129 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-h-HHHHhcCCChHHHHHhhcchhhcccee
Confidence 67899999999999999999995 4 479999999999999999999988653
No 225
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.45 E-value=0.00056 Score=50.33 Aligned_cols=72 Identities=15% Similarity=0.021 Sum_probs=60.3
Q ss_pred cceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 25 KVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGE---HGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
|...++..+...+.+.+. ..+..+|+|..||+|.+.....+.++. +..++|.|+++.....|+-+.-.++++
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 566777888888888886 356669999999999999888888753 256899999999999999999888876
No 226
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.44 E-value=0.00053 Score=46.14 Aligned_cols=60 Identities=13% Similarity=0.026 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 37 ~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
+++.+...+....+|+|||||.==+++.+... .++..++|+|++..+++...+.....++
T Consensus 95 fY~~if~~~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~ 154 (251)
T PF07091_consen 95 FYDEIFGRIPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGV 154 (251)
T ss_dssp HHHHHCCCS---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhcCCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCC
Confidence 33334333445789999999988777777766 3456899999999999999988777654
No 227
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.43 E-value=0.00016 Score=46.18 Aligned_cols=37 Identities=27% Similarity=0.415 Sum_probs=31.5
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPD 83 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~ 83 (110)
.+.++||+||+.|..+..+.++.++.++|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 3479999999999999999999645678999999976
No 228
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0014 Score=46.34 Aligned_cols=55 Identities=25% Similarity=0.328 Sum_probs=48.8
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
..++.+|||.+++-|.=+..++......+ .|+++|.++.-++..+++++..++.+
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n 209 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN 209 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc
Confidence 56889999999999999999999975534 45999999999999999999998875
No 229
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.30 E-value=0.0013 Score=43.50 Aligned_cols=53 Identities=26% Similarity=0.448 Sum_probs=46.4
Q ss_pred hcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 44 ~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
+++.+..++|+||=-|++..++.+. .+...+++.|+++..++.|.+++..++.
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l 65 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNL 65 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCC
Confidence 3556677999999999999999999 4557899999999999999999988764
No 230
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.18 E-value=0.0015 Score=43.23 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=42.9
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
..+++|||+|.|.-++.++=.+ ++.+|+-+|....-+...+......+++++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L~nv 119 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGLENV 119 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCCCCe
Confidence 5899999999999999999554 667899999999887777777777666543
No 231
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0035 Score=43.10 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=47.3
Q ss_pred CeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccccccceeee
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 108 (110)
++||-||=|.|..+..+++.. +-.+++.||+++..++.|++.+........ .-|++++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~ 135 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEII 135 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEE
Confidence 699999999999999999994 456899999999999999999877653222 4555553
No 232
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.17 E-value=0.0038 Score=43.01 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=40.6
Q ss_pred cChhhHHHHHHHHHhhcCCCCeEEEecCCcC----hhHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHH
Q psy5585 29 SAPHMHAHALELLREHLENGKRALDVGSGSG----YLTTCMALMMGE---HGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G----~~~~~l~~~~~~---~~~v~~vD~s~~~~~~a~~~ 91 (110)
..+.....+.+.+.. ....-+||..||+|| .+++.+.+..+. +-+|+|+|+|+.+++.|++-
T Consensus 98 Rd~~~f~~L~~~~~~-~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 98 REAHHFPILAEHARR-RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CCcHHHHHHHHHHHh-cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 334444444444431 122359999999999 555556554321 34799999999999999765
No 233
>PRK10742 putative methyltransferase; Provisional
Probab=97.16 E-value=0.0022 Score=43.21 Aligned_cols=54 Identities=9% Similarity=0.101 Sum_probs=43.7
Q ss_pred HHHHHHhhcCCCC--eEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 37 ALELLREHLENGK--RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 37 ~~~~l~~~~~~~~--~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
+...+. ++++. +|||+-+|+|..++.++..+ . +|+++|-++......+.++...
T Consensus 78 l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G-~--~V~~vEr~p~vaalL~dgL~ra 133 (250)
T PRK10742 78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVG-C--RVRMLERNPVVAALLDDGLARG 133 (250)
T ss_pred HHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHHh
Confidence 344443 55666 89999999999999999994 4 4999999999988888877763
No 234
>PRK00536 speE spermidine synthase; Provisional
Probab=97.14 E-value=0.0047 Score=42.06 Aligned_cols=59 Identities=10% Similarity=-0.022 Sum_probs=47.6
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccccccceeee
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 108 (110)
+..++||-+|-|.|..+..++++ +. +|+.||++++.++.+++.+....- .+.+-|++++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~--~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~ 129 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT--HVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHA 129 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC--eeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEe
Confidence 45689999999999999999998 33 799999999999999997766443 3455566654
No 235
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.13 E-value=0.0016 Score=42.53 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=30.7
Q ss_pred CCCeEEEecCCcC----hhHHHHHHHh----CCCcEEEEEeCCHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSG----YLTTCMALMM----GEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 47 ~~~~vldiGcG~G----~~~~~l~~~~----~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
+.-+||..||++| .+++.+.+.. +.+-+|+|+|+|+.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 3458999999999 4555555521 1134899999999999999753
No 236
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.09 E-value=0.0018 Score=45.57 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=29.8
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
.+++++||+||++|..+..+.++. . +|++||..+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG-~--~V~AVD~g~ 243 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG-M--FVTAVDNGP 243 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC-C--EEEEEechh
Confidence 578899999999999999999984 4 699999664
No 237
>KOG4589|consensus
Probab=97.08 E-value=0.0012 Score=42.82 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=34.2
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
+.++.+|||+||..|.-+-...++..++|.|.|||+-.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 46889999999999999999999988999999999754
No 238
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.06 E-value=0.0047 Score=42.17 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=35.8
Q ss_pred CCeEEEecCCcC----hhHHHHHHHhCC----CcEEEEEeCCHHHHHHHHH
Q psy5585 48 GKRALDVGSGSG----YLTTCMALMMGE----HGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 48 ~~~vldiGcG~G----~~~~~l~~~~~~----~~~v~~vD~s~~~~~~a~~ 90 (110)
.-+||-.||+|| .+++.+.+..+. .-+|+|+|+|..+++.|+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 458999999999 677777777642 4589999999999999964
No 239
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0011 Score=44.28 Aligned_cols=41 Identities=22% Similarity=0.219 Sum_probs=34.2
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSS 88 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a 88 (110)
.++..+||+|+.||.++-.++++. + .+|+++|+.-..+..-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g-A-k~VyavDVG~~Ql~~k 118 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG-A-KHVYAVDVGYGQLHWK 118 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC-C-cEEEEEEccCCccCHh
Confidence 377899999999999999999994 4 4899999997655443
No 240
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.95 E-value=0.0018 Score=38.27 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=26.4
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
+...++|+|||+|.+.--|..-+-+ =+|+|...
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~---G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYP---GWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCC---cccccccc
Confidence 4568999999999999888887433 58888764
No 241
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0023 Score=42.00 Aligned_cols=38 Identities=29% Similarity=0.536 Sum_probs=34.8
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
+.++++|+|+|+..|.-+..+++..++.++|+|+|+.+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 45789999999999999999999988878899999987
No 242
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.85 E-value=0.017 Score=39.97 Aligned_cols=54 Identities=17% Similarity=0.059 Sum_probs=46.1
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGE-HGKAVGIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
...+|+||.||.|.-.+-.....+. ...|...|.|+.-++..++.++..++..+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i 189 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDI 189 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccc
Confidence 4569999999999988888887543 35899999999999999999999887655
No 243
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.0072 Score=39.74 Aligned_cols=57 Identities=19% Similarity=0.377 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHH-hhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q psy5585 31 PHMHAHALELLR-EHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSS 88 (110)
Q Consensus 31 ~~~~~~~~~~l~-~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a 88 (110)
......++.-+. .++.++++||=+|+.+|.....++...+ +|.+++||+|+......
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reL 116 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMREL 116 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHH
Confidence 344455555554 2467899999999999999999999986 78999999999654443
No 244
>KOG4058|consensus
Probab=96.83 E-value=0.0041 Score=39.04 Aligned_cols=58 Identities=29% Similarity=0.307 Sum_probs=43.5
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 35 ~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
...+.++. -.+..+.+|+|+|.|.+.++.++..-. ..+|+|.++-++.+++-..-..+
T Consensus 62 ~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g~~--~a~GvELNpwLVaysrl~a~R~g 119 (199)
T KOG4058|consen 62 ENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCGLR--PAVGVELNPWLVAYSRLHAWRAG 119 (199)
T ss_pred HHHHHHcc--CCCCCcEEeccCCCceeehhhhhhCCC--cCCceeccHHHHHHHHHHHHHHh
Confidence 33444443 345679999999999999999998422 47999999999988876654444
No 245
>KOG0024|consensus
Probab=96.78 E-value=0.0055 Score=42.85 Aligned_cols=45 Identities=29% Similarity=0.462 Sum_probs=41.5
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
.+.++++|-+|+|. |..+...++.++. ++|+.+|+++..++.|++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH
Confidence 56889999999997 9999999999987 689999999999999986
No 246
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.68 E-value=0.0093 Score=40.17 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=42.4
Q ss_pred HHHHHHHHhhcCC--CCeEEEecCCcChhHHHHHHHhCCC-------cEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 35 AHALELLREHLEN--GKRALDVGSGSGYLTTCMALMMGEH-------GKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 35 ~~~~~~l~~~~~~--~~~vldiGcG~G~~~~~l~~~~~~~-------~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
.+++..+...-.+ .-.|+|+|+|+|.++..+++.+... .+++.||.|+.+.+.-++++...
T Consensus 4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~ 73 (252)
T PF02636_consen 4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEH 73 (252)
T ss_dssp HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhh
Confidence 3445555432122 3589999999999999999976532 47999999999988888887653
No 247
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.67 E-value=0.0075 Score=35.74 Aligned_cols=41 Identities=29% Similarity=0.543 Sum_probs=30.2
Q ss_pred EEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 51 ALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 51 vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
++|+|||+|... .+.........++++|.++.++..+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARA 92 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhh
Confidence 999999999987 44444221126899999999998855444
No 248
>KOG3987|consensus
Probab=96.66 E-value=0.00047 Score=45.48 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=36.3
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
.+.++||+|+|.|-++..++..+.. |++.|.|..|....++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee---vyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE---VYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH---HHHHHhhHHHHHHHhh
Confidence 4579999999999999999999855 9999999999887764
No 249
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.46 E-value=0.012 Score=40.25 Aligned_cols=54 Identities=22% Similarity=0.122 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhhcC------CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 33 MHAHALELLREHLE------NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 33 ~~~~~~~~l~~~~~------~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
....+++.|..... ...+||..|||.|.++..++..+ - .+.|.|.|-.|+-..+
T Consensus 36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G-~--~~~gnE~S~~Mll~s~ 95 (270)
T PF07942_consen 36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLG-Y--AVQGNEFSYFMLLASN 95 (270)
T ss_pred HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhcc-c--eEEEEEchHHHHHHHH
Confidence 34445555543322 34689999999999999999994 3 4999999988866554
No 250
>KOG1596|consensus
Probab=96.43 E-value=0.0033 Score=42.40 Aligned_cols=48 Identities=25% Similarity=0.474 Sum_probs=42.8
Q ss_pred hcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCH----HHHHHHHHH
Q psy5585 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP----DLVNSSVKN 91 (110)
Q Consensus 44 ~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~----~~~~~a~~~ 91 (110)
+++++.+||=+|+++|......+..+++.+.|++||.|+ +++..|+++
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR 204 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR 204 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc
Confidence 467999999999999999999999999999999999998 567777655
No 251
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.27 E-value=0.0034 Score=36.48 Aligned_cols=32 Identities=34% Similarity=0.625 Sum_probs=5.9
Q ss_pred EEecCCcChhHHHHHHHhCCCc--EEEEEeCCHH
Q psy5585 52 LDVGSGSGYLTTCMALMMGEHG--KAVGIDHIPD 83 (110)
Q Consensus 52 ldiGcG~G~~~~~l~~~~~~~~--~v~~vD~s~~ 83 (110)
||+|+..|..+..+++...+++ +++++|..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~ 34 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG 34 (106)
T ss_dssp --------------------------EEEESS--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc
Confidence 6899999999999998876544 7999999995
No 252
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.18 E-value=0.026 Score=39.82 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=40.1
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
.++.+|+-+|||. |.++..+++..+. ++|+.+|.+++-++.|++...
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g 214 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGG 214 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCC
Confidence 3445899999998 9999999999865 689999999999999987443
No 253
>KOG2940|consensus
Probab=96.17 E-value=0.016 Score=39.00 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=36.7
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
....++||||+.|++...+.... . .+++-+|-|..|++.++..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-v-ekli~~DtS~~M~~s~~~~ 114 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-V-EKLIMMDTSYDMIKSCRDA 114 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-h-hheeeeecchHHHHHhhcc
Confidence 45579999999999999998874 3 4799999999999998754
No 254
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.16 E-value=0.044 Score=36.09 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=24.4
Q ss_pred CCCeEEEecCCcChhHHHHHHH---hCCCcEEEEEeCCHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALM---MGEHGKAVGIDHIPD 83 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~---~~~~~~v~~vD~s~~ 83 (110)
+...|+|+|.-.|..++.++.. ++.+++|+|+|++..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir 71 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIR 71 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GT
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcc
Confidence 4469999999999999988764 445689999999644
No 255
>KOG1227|consensus
Probab=96.13 E-value=0.0035 Score=43.42 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=42.7
Q ss_pred CCCeEEEecCCcChhHH-HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 47 NGKRALDVGSGSGYLTT-CMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~-~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
.+..|+|+-+|.|++++ ++... ++ ..|+++|.++..++..++++..+++.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gA-k~V~A~EwNp~svEaLrR~~~~N~V~ 244 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GA-KTVFACEWNPWSVEALRRNAEANNVM 244 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-Cc-cEEEEEecCHHHHHHHHHHHHhcchH
Confidence 45789999999999999 66666 44 47999999999999999999888764
No 256
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.09 E-value=0.017 Score=39.50 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=36.4
Q ss_pred eEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 50 RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
+++|+.||.|.++..+.... - ..++++|+++.+++..+.|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~-~~v~a~e~~~~a~~~~~~N~~~ 44 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-F-EIVAANEIDKSAAETYEANFPN 44 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-C-EEEEEEeCCHHHHHHHHHhCCC
Confidence 68999999999999888873 3 2589999999999999888753
No 257
>KOG1122|consensus
Probab=96.03 E-value=0.022 Score=41.21 Aligned_cols=56 Identities=23% Similarity=0.231 Sum_probs=50.7
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
.+++.+|||.++.-|.=+.+++...+.+|.|++.|.+..-++....++...++++.
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~nt 294 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNT 294 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCce
Confidence 46788999999999999999999988899999999999999999999999886643
No 258
>KOG2651|consensus
Probab=96.03 E-value=0.04 Score=39.59 Aligned_cols=43 Identities=26% Similarity=0.379 Sum_probs=36.0
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
.-..++|+|.|.|+++.+++-..+. .|++||-|....+.|++.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~l--sV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGL--SVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCc--eEEEeccchHHHHHHHHH
Confidence 4468999999999999999988654 799999998777777544
No 259
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.00 E-value=0.011 Score=39.15 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=33.7
Q ss_pred CCCeEEEecCCcChhHHHH-HHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 47 NGKRALDVGSGSGYLTTCM-ALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l-~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
...+.||.|+|.|..+..+ ++.+ . +|-.||.++..++.|++.+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~--~VDlVEp~~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-D--EVDLVEPVEKFLEQAKEYLGK 100 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--S--EEEEEES-HHHHHHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHHHhc-C--EeEEeccCHHHHHHHHHHhcc
Confidence 3468999999999999866 4444 3 599999999999999977655
No 260
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=95.92 E-value=0.004 Score=41.84 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=39.0
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
+.+.+|||.|.|-|+.++..+++. + .+|+.+|.++..++.|.-|.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG-A-~~VitvEkdp~VLeLa~lNP 177 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG-A-IHVITVEKDPNVLELAKLNP 177 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC-C-cEEEEEeeCCCeEEeeccCC
Confidence 468899999999999999999995 3 37999999999998886554
No 261
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=95.90 E-value=0.041 Score=33.96 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=26.2
Q ss_pred EecCCcC--hhHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 53 DVGSGSG--YLTTCMA-LMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 53 diGcG~G--~~~~~l~-~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
|+|+..| .....+. +..++.++|+++|.++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6666554 2345667899999999999998888
No 262
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.80 E-value=0.059 Score=38.71 Aligned_cols=61 Identities=13% Similarity=0.220 Sum_probs=44.7
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH--HHhhccccccccceee
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN--VEKSHKALLDSGRVLL 107 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~ 107 (110)
+...++|-+|-|.|.....+.+. +.-.+++-||.++.|++.++++ .+..+-..+.+-|+++
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~V 350 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTV 350 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEE
Confidence 45579999999999999999988 4346899999999999999843 3333333333444444
No 263
>KOG2360|consensus
Probab=95.78 E-value=0.021 Score=40.81 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=50.5
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLD 101 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~ 101 (110)
..++..|+|.+|.-|.-+..++....++++++|.|.+....+.-++.+...++.++.
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~ 267 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVE 267 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccc
Confidence 346689999999999999999999888899999999999999999999888877653
No 264
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.11 Score=36.94 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcC-CCCeEEEecCCcChhHHHHHHHhC-------CCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 34 HAHALELLREHLE-NGKRALDVGSGSGYLTTCMALMMG-------EHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 34 ~~~~~~~l~~~~~-~~~~vldiGcG~G~~~~~l~~~~~-------~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
..++++.+..... ..-.++|+|.|+|.+..-+++... ...++..||+|++....-+++++...
T Consensus 63 a~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 63 AEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred HHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 3344444443222 345799999999999988887541 24589999999999888877776654
No 265
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.42 E-value=0.092 Score=37.67 Aligned_cols=52 Identities=23% Similarity=0.131 Sum_probs=41.8
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 99 (110)
.-++||.=+|+|.=++..+.-.....+|+.-|+|+++++..++|+..+++..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~ 101 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED 101 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC
Confidence 4589999999999999999985433589999999999999999999988765
No 266
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.32 E-value=0.055 Score=37.18 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=35.9
Q ss_pred eEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 50 RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
+++|+-||.|.++..+.... - ..+.++|+++.+.+.-+.|+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~-~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-F-EVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-E-EEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcC-c-EEEEEeecCHHHHHhhhhccc
Confidence 68999999999999999984 2 258999999999999988886
No 267
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.20 E-value=0.19 Score=34.33 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=45.3
Q ss_pred HHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 37 ~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
....+.....++..|+|.-+|+|....+..... . +++|+|++++.++.+.+++...
T Consensus 212 ~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~-r--~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 212 IERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLG-R--RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHhcCCCCCEEeecCCCCChHHHHHHHcC-C--ceEEEecCHHHHHHHHHHHHhh
Confidence 333333336788999999999999988888874 4 4999999999999999998764
No 268
>KOG2078|consensus
Probab=95.17 E-value=0.015 Score=42.19 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=45.8
Q ss_pred hcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 44 ~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
..+++..|.|+.||.|-+++.+++.. +.|++-|.++++++..+.+++.+.++
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNkv~ 297 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNKVD 297 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhccccccc
Confidence 36788999999999999999999884 57999999999999999999887654
No 269
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=94.88 E-value=0.13 Score=36.88 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=37.0
Q ss_pred HHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 38 ~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
.+.|. +.++.+||-|.+| |..++.++.. +| .+|++||+|+......+-+..
T Consensus 28 ~~aL~--i~~~d~vl~ItSa-G~N~L~yL~~-~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 28 MEALN--IGPDDRVLTITSA-GCNALDYLLA-GP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHhC--CCCCCeEEEEccC-CchHHHHHhc-CC-ceEEEEeCCHHHHHHHHHHHH
Confidence 44555 7788999999876 6666666665 33 589999999987666655543
No 270
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.74 E-value=0.16 Score=34.99 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=32.2
Q ss_pred CCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 48 GKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 48 ~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
..+|+=||||. -..++.+++..+....|+++|+++++++.+++-+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~ 167 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVA 167 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh
Confidence 35999999995 88888898876565679999999999999998877
No 271
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=94.70 E-value=0.078 Score=36.12 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=31.1
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhC----CCcEEEEEeCCH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMG----EHGKAVGIDHIP 82 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~----~~~~v~~vD~s~ 82 (110)
+.+...++|+|||.|.++..++.... .+..++.||-..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 45778999999999999999999873 234688898865
No 272
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.70 E-value=0.066 Score=35.45 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 33 MHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
-.+.+++++.. .++...|.|+|||.+.++..+.... +|.+.|..+
T Consensus 59 Pvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~~~----~V~SfDLva 103 (219)
T PF05148_consen 59 PVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPNKH----KVHSFDLVA 103 (219)
T ss_dssp HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S-------EEEEESS-
T ss_pred cHHHHHHHHHh-cCCCEEEEECCCchHHHHHhcccCc----eEEEeeccC
Confidence 34556777752 3345699999999999886654331 355555543
No 273
>KOG2920|consensus
Probab=94.62 E-value=0.037 Score=38.02 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=32.3
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLV 85 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~ 85 (110)
..+++|||+|||+|...+...... . ..+...|.+.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-A-VSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-c-ceeeeEecchhhe
Confidence 478899999999999999988884 2 4699999998876
No 274
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.59 E-value=0.12 Score=38.56 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=37.7
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
++.+|+-+|+|. |..++..++..+. .|+++|.+++.++.+++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH
Confidence 678999999997 9999999999876 69999999998888875
No 275
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.48 E-value=0.18 Score=33.91 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=25.4
Q ss_pred eEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q psy5585 50 RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSS 88 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a 88 (110)
+|||.-+|.|..++.++.. |. +|+++|-|+-+....
T Consensus 78 ~VLDaTaGLG~Da~vlA~~-G~--~V~~lErspvia~Ll 113 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASL-GC--KVTGLERSPVIAALL 113 (234)
T ss_dssp -EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHH
T ss_pred EEEECCCcchHHHHHHHcc-CC--eEEEEECCHHHHHHH
Confidence 8999999999999999976 44 699999999654443
No 276
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.35 E-value=0.64 Score=31.43 Aligned_cols=74 Identities=16% Similarity=0.073 Sum_probs=42.0
Q ss_pred cccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 23 GYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
.++...+......+..-.....--.+++||-+|=.. ..+++++-. +...+|+.+|+++.+++..++..+..+..
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDD-LtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl~ 93 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAERGDLEGKRILFLGDDD-LTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGLP 93 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT--
T ss_pred cccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCc-HHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCCc
Confidence 344555556666665555553334678999888432 333444433 34468999999999999999999888765
No 277
>KOG0022|consensus
Probab=94.14 E-value=0.19 Score=35.45 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=36.4
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
..+++++.-+|+|. |.....-++..++ ++++|+|++++-.+.+++
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GA-srIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGA-SRIIGVDINPDKFEKAKE 235 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCc-ccEEEEecCHHHHHHHHh
Confidence 56888999999987 6666666777655 789999999998888863
No 278
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.98 E-value=0.13 Score=38.11 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=18.3
Q ss_pred CeEEEecCCcChhHHHHHHH
Q psy5585 49 KRALDVGSGSGYLTTCMALM 68 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~ 68 (110)
..+||+|||+|.++..|.++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER 138 (506)
T ss_pred EEEEeccceeehhHHHHhhC
Confidence 36899999999999999998
No 279
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=93.87 E-value=0.33 Score=33.30 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=32.2
Q ss_pred CeEEEecCCc--ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 49 KRALDVGSGS--GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 49 ~~vldiGcG~--G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
..+||||||. -...=.+++...+.++|+=||.++..+..++..+..+.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~ 119 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP 119 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC
Confidence 4799999994 33444566666788999999999999998887766543
No 280
>KOG2798|consensus
Probab=93.85 E-value=0.1 Score=36.60 Aligned_cols=38 Identities=26% Similarity=0.168 Sum_probs=31.5
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSS 88 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a 88 (110)
.-+||..|||.|.++..++..+ . ++.|-|.|--|+--.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G-~--~~qGNEfSy~Mli~S 188 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLG-F--KCQGNEFSYFMLICS 188 (369)
T ss_pred CceEEecCCCchhHHHHHHHhc-c--cccccHHHHHHHHHH
Confidence 4589999999999999999995 4 388889998776544
No 281
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=93.59 E-value=0.21 Score=33.35 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 31 PHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
..+..++.+.++. ....+++|+-||+|..++.+.... .+|+.-|+++..+...+..++.
T Consensus 6 ~~l~~~I~~~ip~--~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 6 RKLAKWIIELIPK--NKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp GGGHHHHHHHS-S---S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHHhc
Confidence 3455666665541 167899999999999999887753 2599999999888877755544
No 282
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.55 E-value=0.26 Score=35.27 Aligned_cols=47 Identities=32% Similarity=0.222 Sum_probs=42.9
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
..+|+|.=+|+|.=++..+.-.+. .+|+.-|+|+.+++..++|++.|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhc
Confidence 679999999999999999998654 38999999999999999999998
No 283
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.54 E-value=0.31 Score=34.56 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=40.2
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
..++++|+-+|+|- |..++.+++..+. +|+++|.+++-.+.|++.-...
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lGAd~ 213 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLGADH 213 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhCCcE
Confidence 56889999999983 7888889997764 8999999999998888665444
No 284
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=93.45 E-value=0.35 Score=34.36 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=39.1
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
..++.++.-+|||. |..++.-++..+. ++++++|++++-++.|++-
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA-~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGA-GRIIAVDINPEKLELAKKF 229 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCC-ceEEEEeCCHHHHHHHHhc
Confidence 67888999999996 8888888888665 6899999999999998753
No 285
>KOG2793|consensus
Probab=93.38 E-value=0.27 Score=33.38 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=29.0
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
..+||++|+|+|..++.++...+. +|+-.|... .+.....+.
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~--~v~ltD~~~-~~~~L~~~~ 128 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGA--EVVLTDLPK-VVENLKFNR 128 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcc--eeccCCchh-hHHHHHHhh
Confidence 457999999999988888887554 466666654 444444443
No 286
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.04 E-value=0.39 Score=34.18 Aligned_cols=46 Identities=20% Similarity=0.455 Sum_probs=38.0
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
+.++.+||.+|||. |..+..+++..+. .++++++.+++..+.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc
Confidence 45778999999988 8899999998754 3599999999988887764
No 287
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.74 E-value=0.27 Score=34.33 Aligned_cols=42 Identities=10% Similarity=-0.084 Sum_probs=34.5
Q ss_pred EEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 51 ALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 51 vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
|+|+-||.|.++..+.... - -.+.++|+++.+++.-+.|+..
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~-~~~~a~e~~~~a~~ty~~N~~~ 42 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-F-KCVFASEIDKYAQKTYEANFGN 42 (315)
T ss_pred CEEEecCccHHHHHHHHcC-C-eEEEEEeCCHHHHHHHHHhCCC
Confidence 5899999999999998773 3 1467899999999988887653
No 288
>KOG1098|consensus
Probab=92.70 E-value=0.15 Score=38.90 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=34.1
Q ss_pred hcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 44 ~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
++.+.+.|||+||..|.-.-..++.++..+-|+|+|+-+
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 356888999999999998888888888778999999876
No 289
>KOG3178|consensus
Probab=92.65 E-value=0.24 Score=35.04 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=38.6
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
-...+|+|.|.|..+..+...+ + +|-+++++...+..+.+... .++.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~gV~ 224 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-PGVE 224 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-CCcc
Confidence 3689999999999999999976 4 39999999988888777765 4443
No 290
>KOG3924|consensus
Probab=92.60 E-value=0.25 Score=35.68 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=40.2
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 35 ~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
..+.+-+. +.+.....|+|.|.|.+..+++...+. .+-+|+|+....-+.+..+
T Consensus 182 ~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~-k~svG~eim~~pS~~a~~~ 235 (419)
T KOG3924|consen 182 RSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGC-KKSVGFEIMDKPSQCAELN 235 (419)
T ss_pred HHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhcc-ccccceeeecCcHHHHHHH
Confidence 33444454 678899999999999999999998654 4678999888665555443
No 291
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.50 E-value=0.65 Score=29.76 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=28.7
Q ss_pred eEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 50 RALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 50 ~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
+|.-+|+|+ |.....+....+. +|+.+|.+++.++.+++.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHH
Confidence 366789987 5433333333344 699999999999998888766
No 292
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.11 E-value=0.29 Score=32.32 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=35.5
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPD 83 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~ 83 (110)
+++++.|+|+-.|.|+.+..++...+++|.|++.-..+.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 678999999999999999999999999999999876653
No 293
>KOG2352|consensus
Probab=92.05 E-value=0.11 Score=38.28 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=41.2
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
.....++-+|-|.|.+..++...+ ++.+++++|+++.+++.+++.+..
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f 341 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGF 341 (482)
T ss_pred cccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhch
Confidence 355689999999999999999987 457899999999999999887743
No 294
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.91 E-value=0.54 Score=31.89 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHhh----cCCCCeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHhh
Q psy5585 31 PHMHAHALELLREH----LENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 31 ~~~~~~~~~~l~~~----~~~~~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
..+...+.++|... ..+.-++||||.|.-.+--.+--+ .-+ ..+|.|+++..++.|+.++..+
T Consensus 58 AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~--eYgwrfvGseid~~sl~sA~~ii~~N 125 (292)
T COG3129 58 ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVH--EYGWRFVGSEIDSQSLSSAKAIISAN 125 (292)
T ss_pred hHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccce--eecceeecCccCHHHHHHHHHHHHcC
Confidence 45555666666421 124558899999965543332222 112 5899999999999999998887
No 295
>PRK10458 DNA cytosine methylase; Provisional
Probab=91.60 E-value=0.63 Score=34.46 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=35.9
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
..+++|+-||.|.+...+-..... .|.++|+++.+.+.-+.|+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~--~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQ--CVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCE--EEEEEechHHHHHHHHHHc
Confidence 458999999999999999877433 5789999999888877775
No 296
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=91.47 E-value=0.72 Score=32.24 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=33.2
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHH-hCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALM-MGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~-~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
..++.+||-+|||. |.++..++++ .+. .+|+++|.+++-++.+++
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~-~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPE-SKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCC-CcEEEEeCcHhHHHHHhh
Confidence 35678999999986 6666676765 332 369999999887777754
No 297
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=91.44 E-value=0.34 Score=30.02 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=20.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhhcc
Q psy5585 74 KAVGIDHIPDLVNSSVKNVEKSHK 97 (110)
Q Consensus 74 ~v~~vD~s~~~~~~a~~~~~~~~~ 97 (110)
+|+|+|+-+++++.+++++...+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~ 24 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL 24 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC
Confidence 599999999999999999998754
No 298
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.29 E-value=0.8 Score=31.96 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=34.8
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
.++.+||-.|+|. |..+..+++..+. .+|+++|.+++-++.+++
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH
Confidence 3677899999885 7888888888654 368999999988888765
No 299
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=91.01 E-value=0.22 Score=35.86 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=16.1
Q ss_pred CCeEEEecCCcChhHHHHHH
Q psy5585 48 GKRALDVGSGSGYLTTCMAL 67 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~ 67 (110)
...|+|+|||+|.+++.+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 55899999999988766644
No 300
>KOG2198|consensus
Probab=90.97 E-value=1 Score=32.32 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=43.2
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGE---HGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
++++.+|||.++.-|.-+..+.+...+ ++.|++-|.+..-+....+......-.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~ 209 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP 209 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc
Confidence 578999999999999999888887532 348999999998888887776554433
No 301
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.83 E-value=0.75 Score=32.30 Aligned_cols=45 Identities=16% Similarity=0.060 Sum_probs=37.4
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
..+++|+-||.|.+.+.+.... - .-+.++|+++.+++.-+.+...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f-~~~~a~Eid~~a~~ty~~n~~~ 47 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-F-EIVFANEIDPPAVATYKANFPH 47 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-C-eEEEEEecCHHHHHHHHHhCCC
Confidence 3579999999999998888874 3 2489999999999988887763
No 302
>KOG3045|consensus
Probab=90.82 E-value=0.5 Score=32.58 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhhcCCCCeEEEecCCcChhHH
Q psy5585 33 MHAHALELLREHLENGKRALDVGSGSGYLTT 63 (110)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~ 63 (110)
-.+.+++.+.. .....+|.|+|||-+.++.
T Consensus 167 Pld~ii~~ik~-r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 167 PLDVIIRKIKR-RPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred hHHHHHHHHHh-CcCceEEEecccchhhhhh
Confidence 34556666752 3456689999999998775
No 303
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.80 E-value=1.6 Score=32.43 Aligned_cols=72 Identities=13% Similarity=0.063 Sum_probs=47.8
Q ss_pred cceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 25 KVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMG---EHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
+...+...+...+...+.....+...+.|..||+|.+.....+..+ ....++|.|....+...+..+...++
T Consensus 195 g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~ 269 (501)
T TIGR00497 195 GEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN 269 (501)
T ss_pred ceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC
Confidence 3444555555555554432122556899999999998876554321 22358999999999999988765543
No 304
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.73 E-value=0.51 Score=27.50 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=27.1
Q ss_pred CCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHH
Q psy5585 56 SGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 56 cG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~~~ 91 (110)
||.|..+..+++.+...+ +|+.+|.+++.++.++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~ 40 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE 40 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc
Confidence 556678888888766656 799999999988877643
No 305
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.65 E-value=0.87 Score=33.21 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=34.4
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
.++++|+-+|+|. |......++..+. +|+.+|.++.....|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA--RVIVTEVDPICALQAA 242 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECChhhHHHHH
Confidence 4788999999997 8888888887765 6999999987766665
No 306
>PLN02740 Alcohol dehydrogenase-like
Probab=90.44 E-value=1 Score=32.04 Aligned_cols=45 Identities=22% Similarity=0.339 Sum_probs=35.3
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+||-+|+|. |..+..+++..+. .+|+++|.+++-++.+++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHH
Confidence 56788999999886 7777888887653 259999999988877754
No 307
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=89.98 E-value=1.9 Score=30.50 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=35.2
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+||-.|+|. |..+..+++..+. .+|+++|.+++-.+.+++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH
Confidence 56788999999875 7788888888653 369999999888777754
No 308
>KOG1709|consensus
Probab=89.83 E-value=2.2 Score=28.77 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=37.5
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
.++.+||++|.|.|....++.++ ++. +=+-+|..++.++..+...
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p~-~H~IiE~hp~V~krmr~~g 144 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PPD-EHWIIEAHPDVLKRMRDWG 144 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CCc-ceEEEecCHHHHHHHHhcc
Confidence 57889999999999999999988 553 4577999999988877554
No 309
>KOG2671|consensus
Probab=89.59 E-value=0.24 Score=35.29 Aligned_cols=39 Identities=23% Similarity=0.189 Sum_probs=34.4
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVN 86 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~ 86 (110)
..++..|+|.-.|||.+.+..++.+ . .|+|.|++-.++.
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FG-a--~viGtDIDyr~vr 244 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFG-A--YVIGTDIDYRTVR 244 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhc-c--eeeccccchheee
Confidence 6789999999999999999999984 4 5999999987776
No 310
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.53 E-value=1.9 Score=29.25 Aligned_cols=44 Identities=30% Similarity=0.458 Sum_probs=33.2
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
.++.+||-+|+|. |.++..+++..+. .+|+++|.+++-.+.+++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH
Confidence 3677899999875 7777888887654 248899998887776654
No 311
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.06 E-value=1.6 Score=30.46 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=35.2
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+|+-.|+|. |..+..+++..+. +|+++|.+++-++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~--~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGA--AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEEcCCHHHHHHHHH
Confidence 45778999999976 8888888888654 69999999888777653
No 312
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=88.89 E-value=1.3 Score=24.59 Aligned_cols=36 Identities=25% Similarity=0.553 Sum_probs=22.1
Q ss_pred CCCCeEEEecCCcCh-hHHHHHHHhCCCcEEEEEeCC
Q psy5585 46 ENGKRALDVGSGSGY-LTTCMALMMGEHGKAVGIDHI 81 (110)
Q Consensus 46 ~~~~~vldiGcG~G~-~~~~l~~~~~~~~~v~~vD~s 81 (110)
...++||-+||.+|+ ++..++..++.....+||-..
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 344799999999995 444566666666678887654
No 313
>KOG1269|consensus
Probab=88.83 E-value=0.79 Score=32.87 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=40.2
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
..+++.++|+|||.|.....++...+ .+++|++.++.-+.++........
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~ 157 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAY 157 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHH
Confidence 55777899999999999999988843 469999999988887766655443
No 314
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.52 E-value=1.6 Score=28.18 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=20.2
Q ss_pred CeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHHH
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSSV 89 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~ 89 (110)
++|--+|.| +.++.++-.+...| +|+|+|++++.++..+
T Consensus 1 M~I~ViGlG--yvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 1 MKIAVIGLG--YVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp -EEEEE--S--TTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred CEEEEECCC--cchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 356666665 44444443332222 7999999998776654
No 315
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=88.23 E-value=0.56 Score=30.32 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=43.5
Q ss_pred HHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 38 ~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
..++..+.+.+...+|+|+..|.+--..++.. .+++++++|.-.+|-...+-+++.++
T Consensus 70 rhwivnhckhdttyidiganvgtfcgiaarhi-tqgkiiaiepltemensirmnvqlnn 127 (286)
T PF05575_consen 70 RHWIVNHCKHDTTYIDIGANVGTFCGIAARHI-TQGKIIAIEPLTEMENSIRMNVQLNN 127 (286)
T ss_pred hHhhhhhccCCceEEEeccccccchhhhhhhc-ccCceEEEechhhhhhheeeeeeeCC
Confidence 34454455677899999999998777777775 57899999999888777766555443
No 316
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.00 E-value=2.3 Score=29.64 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=34.5
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
++++.+||-.|+|. |..+..+++..+. +|++++.+++-.+.+++.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~--~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGA--TVHVMTRGAAARRLALAL 208 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHh
Confidence 56788999999874 6677777887654 699999998877777653
No 317
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.92 E-value=2 Score=29.61 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=30.8
Q ss_pred CeEEEecCCc-C-hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 49 KRALDVGSGS-G-YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 49 ~~vldiGcG~-G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
.+|--||+|+ | .++..++.. +. +|+.+|.+++.++.+.+++..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~--~V~l~d~~~~~~~~~~~~i~~ 50 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GV--DVLVFETTEELATAGRNRIEK 50 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CC--EEEEEECCHHHHHHHHHHHHH
Confidence 4788899986 3 344444444 34 699999999999887766554
No 318
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=87.89 E-value=2.3 Score=29.47 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=33.9
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+||-+|+|. |..+..+++..+. .+|++++.+++-.+.+++
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~-~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGA-EDVIGVDPSPERLELAKA 206 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH
Confidence 45678899899875 7777778887655 249999999887777653
No 319
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=87.73 E-value=2.7 Score=28.92 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=32.6
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
++.++|-+|||. |.++..+++..+. ..|+++|.+++.++.+..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGATG 187 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhh
Confidence 566888899986 8888888888664 247788998887776653
No 320
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.65 E-value=2.1 Score=32.19 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=34.9
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
++.+++-+|+|. |..+..+++..+. .|+++|.++..++.+++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA--~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA--IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH
Confidence 457999999997 8888888888776 59999999987776664
No 321
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=87.51 E-value=2.4 Score=29.70 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=34.5
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+||-.|+|. |..+..+++..+. .+|+++|.++.-.+.+++
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH
Confidence 45778999999875 7777888887654 259999999887777753
No 322
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.47 E-value=2.3 Score=30.06 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=34.4
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+||-.|+|. |..+..+++..+. .+|+++|.+++-.+.+++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH
Confidence 45678888899875 7777778887654 259999999988777754
No 323
>PTZ00357 methyltransferase; Provisional
Probab=87.41 E-value=3.3 Score=32.67 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=28.9
Q ss_pred eEEEecCCcChhHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 50 RALDVGSGSGYLTTCMALM---MGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~---~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
.|+.+|+|-|=+.-...+. .+.+-+|++||.++..+...+.+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr 747 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMR 747 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHH
Confidence 5899999999665554443 34456899999996654444443
No 324
>KOG1331|consensus
Probab=87.22 E-value=0.33 Score=33.54 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=29.7
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
..+..++|+|||.|-.+.. .+...++|+|.+...+..+++
T Consensus 44 ~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~ 83 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKR 83 (293)
T ss_pred CCcceeeecccCCcccCcC-----CCcceeeecchhhhhcccccc
Confidence 3578999999999863211 144578999999998888763
No 325
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=87.22 E-value=0.91 Score=30.97 Aligned_cols=45 Identities=24% Similarity=0.224 Sum_probs=29.5
Q ss_pred CCCeEEEecCCcC-hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 47 NGKRALDVGSGSG-YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 47 ~~~~vldiGcG~G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
++.++||+|||.- +..+.+.+.+. +|+..|..+.-.+..++-++.
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~---~I~l~dy~~~N~~el~kWl~~ 101 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFE---EIVLSDYSEQNREELEKWLRK 101 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEE---EEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhc---ceEEeeccHhhHHHHHHHHCC
Confidence 4568999999963 33444445543 599999999888777655443
No 326
>PLN02827 Alcohol dehydrogenase-like
Probab=86.71 E-value=2.8 Score=29.79 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=33.3
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.+||-.|+|. |..+..+++..+. ..|+++|.+++-.+.++
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~ 235 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAK 235 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHH
Confidence 55788999999876 7777778887653 25889998887776664
No 327
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.69 E-value=3.1 Score=28.52 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=28.6
Q ss_pred CeEEEecCCc-Ch-hHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 49 KRALDVGSGS-GY-LTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 49 ~~vldiGcG~-G~-~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
.+|.-+|+|. |. ++..++.. +. +|+.+|.+++.++.+++.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G~--~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-GY--DVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-CC--eEEEEeCCHHHHHHHHHHHH
Confidence 4688889986 43 33444444 33 69999999999887665443
No 328
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=86.26 E-value=0.81 Score=32.33 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=15.7
Q ss_pred CCCeEEEecCCcChhHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMAL 67 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~ 67 (110)
..-+|+|+||..|..++.+..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHHH
Confidence 445899999999998887766
No 329
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=86.23 E-value=3 Score=29.34 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=33.9
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+||-+|+|. |..+..+++..+. .+|++++.+++-.+.+++
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH
Confidence 56788999999875 7777778887653 369999999887777643
No 330
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=86.05 E-value=4.8 Score=28.48 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=33.2
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
+..+.+|+.+|+| |+.-+.+..+.+ ..|.+||+++.-+...+-++..
T Consensus 61 ~g~ghrivtigSG-Gcn~L~ylsr~P--a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 61 LGIGHRIVTIGSG-GCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred cCCCcEEEEecCC-cchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHHH
Confidence 4577899999998 554444444423 4799999999887776655544
No 331
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.67 E-value=2.9 Score=28.64 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=27.9
Q ss_pred CeEEEecCCc-C-hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 49 KRALDVGSGS-G-YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 49 ~~vldiGcG~-G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
.+|.-+|+|. | .++..++.. +. +|+.+|.+++.++.+++.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G~--~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-GF--DVTIYDISDEALEKAKERI 46 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-CC--eEEEEeCCHHHHHHHHHHH
Confidence 4688889886 3 233333333 33 6999999999888887664
No 332
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=85.41 E-value=4.4 Score=26.84 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=31.6
Q ss_pred CCCCeEEEecCCcChhHHHHHHH---hCCCcEEEEEeCCHHHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALM---MGEHGKAVGIDHIPDLVNS 87 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~---~~~~~~v~~vD~s~~~~~~ 87 (110)
.+...|+|+|+--|..+++.+.. ++.+-+|+++|++-..++.
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p 112 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDP 112 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCCh
Confidence 35579999999999888877763 4444689999999665443
No 333
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=85.20 E-value=4 Score=28.80 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=33.8
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.+||-+|+|. |..+..+++..+. .+|+++|.+++-.+.++
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~-~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGA-SRIIGIDINPDKFELAK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHH
Confidence 56778899899875 7777778887654 36999999988777764
No 334
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=85.09 E-value=2.1 Score=29.90 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=40.2
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccccc
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDS 102 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~ 102 (110)
.++.|+-+| -.-..+++++-. +-..+|..+|+++..++..++.+...+++++..
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~ 205 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELGYNNIEA 205 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhCccchhh
Confidence 566799998 444445555444 334589999999999999999999988876643
No 335
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=85.08 E-value=1.8 Score=25.49 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=27.2
Q ss_pred CcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 57 GSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 57 G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
|.|..+..+++..+ .+|+++|.++.-.+.+++.
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh
Confidence 45788899999976 5899999999888888753
No 336
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=85.06 E-value=4.5 Score=26.53 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=33.3
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
.++.+||..|+|. |.....+++..+ .+|++++.+++..+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 5678999999985 777777777755 379999999877776643
No 337
>KOG2782|consensus
Probab=85.04 E-value=1.9 Score=29.08 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 31 PHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
+-+....++.+. ..++...+|.--|.|..+..+.+.. +..++++.|.+|-+-+.++...
T Consensus 29 PVm~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 29 PVMLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred ceehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhh
Confidence 455666777776 5678899999999999999999985 5678999999998877776554
No 338
>KOG0821|consensus
Probab=85.03 E-value=1.7 Score=29.38 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=32.9
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
....|++||.|.|.++..+.... . +....||++...+.-.+.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~-~-~RL~vVE~D~RFip~LQ~ 91 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNAD-V-ARLLVVEKDTRFIPGLQM 91 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcc-h-hheeeeeeccccChHHHH
Confidence 45689999999999999999873 3 368889999866555443
No 339
>KOG3201|consensus
Probab=84.84 E-value=0.52 Score=30.25 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=40.4
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 96 (110)
.+.+|+|+|-|. |..++.++... +...|...|=+++.++..++....+.
T Consensus 29 rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~ 78 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNM 78 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhccc
Confidence 557899999995 77788888875 55789999999999999888776663
No 340
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=84.49 E-value=4.2 Score=28.64 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=33.2
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.+||-+|+|. |..+..+++..+. .+|+++|.++.-.+.++
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~ 226 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAK 226 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHH
Confidence 45778999889875 7777777887653 26999999887777664
No 341
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.44 E-value=3.2 Score=32.42 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=31.5
Q ss_pred CeEEEecCCc-C-hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 49 KRALDVGSGS-G-YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 49 ~~vldiGcG~-G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
.+|.-||+|+ | .++..++.. +. .|+.+|.+++.++.+.+++..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~--~V~l~d~~~~~l~~~~~~~~~ 358 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-GV--PVIMKDINQKALDLGMTEAAK 358 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-CC--eEEEEeCCHHHHHHHHHHHHH
Confidence 4799999998 4 334444444 44 599999999999888776654
No 342
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=84.38 E-value=4.1 Score=28.49 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=32.0
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeC---CHHHHHHHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDH---IPDLVNSSV 89 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~---s~~~~~~a~ 89 (110)
.++.+|+-+|+|. |.++..+++..+. +|++++. ++.-.+.++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~--~vi~~~~~~~~~~~~~~~~ 216 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF--EVYVLNRRDPPDPKADIVE 216 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHHHH
Confidence 4678899999986 8888888888655 6999886 566666554
No 343
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=84.28 E-value=8.5 Score=26.63 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=36.0
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGE---HGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~---~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
.....+|+|+|+-.-+..+...+.+ ....+.+|+|+..+...-+.+..
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~ 128 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILR 128 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHH
Confidence 4668999999998777777766533 24789999999888776655544
No 344
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=84.06 E-value=8.1 Score=24.43 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=23.4
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
-..-|+|+|=|+|..--.|.+.+ ++-.|+.+|-.-
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~l 62 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIF-PDRRIYVFDRAL 62 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH---SS-EEEEESS-
T ss_pred CCCceEEeccCCCccHHHHHHhC-CCCeEEEEeeec
Confidence 44689999999999999999998 556899998654
No 345
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=84.02 E-value=1 Score=32.73 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=26.1
Q ss_pred CeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHH
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSS 88 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a 88 (110)
.+|--+| -|+.++.++-.+...| +|+|+|+++..++..
T Consensus 10 ~~I~ViG--LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~l 48 (436)
T COG0677 10 ATIGVIG--LGYVGLPLAAAFASAGFKVIGVDINQKKVDKL 48 (436)
T ss_pred eEEEEEc--cccccHHHHHHHHHcCCceEeEeCCHHHHHHH
Confidence 4555554 5577777776655443 799999999877654
No 346
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=83.59 E-value=6.7 Score=28.21 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=38.6
Q ss_pred HHHHHHhhcCCCCeEEEecCCcChhHHHHHHHh------CCCcEEEEEeC----CHHHHHHHHHHHHh
Q psy5585 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMM------GEHGKAVGIDH----IPDLVNSSVKNVEK 94 (110)
Q Consensus 37 ~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~------~~~~~v~~vD~----s~~~~~~a~~~~~~ 94 (110)
+++.+. -.+.-.|+|+|.|.|.....|.+.+ ++.-++|+|+. +...++.+.+++..
T Consensus 102 IleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~ 167 (374)
T PF03514_consen 102 ILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAE 167 (374)
T ss_pred HHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHH
Confidence 444443 2344579999999997776666542 23448999999 77778777776644
No 347
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=83.38 E-value=5.3 Score=27.35 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=33.9
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+||..|+|. |..+..+++..+. +|++++.++...+.+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~--~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGA--AVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHH
Confidence 45677888888774 7888888888654 69999999988777653
No 348
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.37 E-value=6 Score=27.92 Aligned_cols=42 Identities=26% Similarity=0.200 Sum_probs=28.6
Q ss_pred CeEEEecCCc-ChhH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 49 KRALDVGSGS-GYLT-TCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 49 ~~vldiGcG~-G~~~-~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
.+|--||+|+ |... ..++.. +. +|+..|.+++.++.+...+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-G~--~V~l~D~~~~~~~~~~~~i~ 51 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-GL--DVVAWDPAPGAEAALRANVA 51 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CC--eEEEEeCCHHHHHHHHHHHH
Confidence 5788899986 4433 333433 44 69999999988877665443
No 349
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=83.22 E-value=4.8 Score=28.31 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=31.7
Q ss_pred CeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 49 KRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 49 ~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
++|--+|.|+ |.-........+- .|+..|+++++++.+...+...
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~ 49 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKN 49 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHH
Confidence 4688899997 4433333333333 5999999999999888777665
No 350
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=83.20 E-value=3.9 Score=29.85 Aligned_cols=38 Identities=24% Similarity=0.172 Sum_probs=30.6
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLV 85 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~ 85 (110)
..+++|+-+|+|. |......++.++. +|+++|.++...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~ 231 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA--RVIVTEVDPIRA 231 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC--EEEEEeCChhhH
Confidence 4788999999997 8777777777665 699999988543
No 351
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=83.16 E-value=2.8 Score=32.72 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=31.6
Q ss_pred CeEEEecCCc-C-hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 49 KRALDVGSGS-G-YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 49 ~~vldiGcG~-G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
.+|--||+|+ | .++..++.. +. .|+.+|.+++.++.+.+++..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~--~V~l~d~~~~~l~~~~~~~~~ 358 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK-GT--PIVMKDINQHSLDLGLTEAAK 358 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC-CC--eEEEEeCCHHHHHHHHHHHHH
Confidence 4789999997 4 444444444 33 599999999999888777654
No 352
>KOG2352|consensus
Probab=82.31 E-value=7.2 Score=29.12 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=37.6
Q ss_pred hhcCCCC-eEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 43 EHLENGK-RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 43 ~~~~~~~-~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
.++.+.. +++.+|||.-.++..+-+.+-+ .|+.+|+|+-.++.....-
T Consensus 43 ~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~ 91 (482)
T KOG2352|consen 43 KYLSPSDFKILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRN 91 (482)
T ss_pred HhhchhhceeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhcc
Confidence 3344555 9999999999998888887545 5999999998888776544
No 353
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.13 E-value=3.9 Score=28.02 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=27.2
Q ss_pred eEEEecCCc-C-hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 50 RALDVGSGS-G-YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 50 ~vldiGcG~-G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
+|.-+|+|. | .++..+++. +. +|+.+|.+++.++.+.+..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~--~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GF--QTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CC--cEEEEeCCHHHHHHHHHHH
Confidence 577888875 3 333344444 33 5999999999988876543
No 354
>KOG1209|consensus
Probab=81.92 E-value=3 Score=28.20 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=28.9
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~ 82 (110)
....||-.||..|.++.++++.+..+| .|+++--+-
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~ 42 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRL 42 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEcccc
Confidence 556899999999999999999887666 677765443
No 355
>KOG2912|consensus
Probab=81.82 E-value=3 Score=29.71 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=33.4
Q ss_pred EEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy5585 52 LDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98 (110)
Q Consensus 52 ldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 98 (110)
+|||+|+-.+--.+... ..+=...++|+++..+..|.+++.+++.+
T Consensus 107 iDIgtgasci~~llg~r-q~n~~f~~teidd~s~~~a~snV~qn~ls 152 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGAR-QNNWYFLATEIDDMSFNYAKSNVEQNNLS 152 (419)
T ss_pred eeccCchhhhHHhhhch-hccceeeeeeccccccchhhccccccccc
Confidence 78888865554444333 22335789999999999999999988764
No 356
>KOG1253|consensus
Probab=81.81 E-value=0.69 Score=34.43 Aligned_cols=54 Identities=22% Similarity=0.140 Sum_probs=46.2
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALL 100 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 100 (110)
+.-+|||.=|++|.-++..++..+.-.+|++.|.++..++..++|++.++++.+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~i 162 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDI 162 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhh
Confidence 445899999999999999999876545899999999999999999999866543
No 357
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.79 E-value=5.4 Score=27.19 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=26.9
Q ss_pred eEEEecCCc--ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 50 RALDVGSGS--GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 50 ~vldiGcG~--G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
+|--+|+|. +.++..++.. +. +|+++|.+++.++.+++++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~--~V~~~d~~~~~~~~~~~~i 46 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GY--DVVMVDISDAAVDRGLATI 46 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CC--ceEEEeCCHHHHHHHHHHH
Confidence 577788885 3444444444 33 5999999999887665443
No 358
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=81.60 E-value=3.1 Score=31.98 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=27.9
Q ss_pred CCCeEEEecCCcChhHHHHHHHhC------C-----CcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMG------E-----HGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~------~-----~~~v~~vD~s~ 82 (110)
+.-+|+|+|-|+|...+...+... + .-+++++|..+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 346899999999999888887651 1 34899999754
No 359
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.41 E-value=2.9 Score=25.21 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=24.9
Q ss_pred CCCeEEEecCCcC-hhHHHHHHHhCCCcEEEEEeCCHH
Q psy5585 47 NGKRALDVGSGSG-YLTTCMALMMGEHGKAVGIDHIPD 83 (110)
Q Consensus 47 ~~~~vldiGcG~G-~~~~~l~~~~~~~~~v~~vD~s~~ 83 (110)
..++|+|+|.|.= ..+..|+++ +- .++++|+++.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~-g~--dv~atDI~~~ 47 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER-GF--DVLATDINEK 47 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc-CC--cEEEEecccc
Confidence 4569999999863 455556666 33 5999999986
No 360
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=81.31 E-value=3.5 Score=32.35 Aligned_cols=44 Identities=25% Similarity=0.227 Sum_probs=32.1
Q ss_pred CeEEEecCCc-C-hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 49 KRALDVGSGS-G-YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 49 ~~vldiGcG~-G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
.+|--||+|+ | .++..++.. +. .|+.+|.+++.++.+.+++...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~-G~--~V~l~d~~~~~l~~~~~~i~~~ 381 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK-GL--KTVLKDATPAGLDRGQQQVFKG 381 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC-CC--cEEEecCCHHHHHHHHHHHHHH
Confidence 4789999997 4 334444444 33 5999999999999987777653
No 361
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=80.98 E-value=6.9 Score=28.15 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=35.1
Q ss_pred cCCCCeEEEec-CCc-ChhHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHH
Q psy5585 45 LENGKRALDVG-SGS-GYLTTCMALMMGE-HGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 45 ~~~~~~vldiG-cG~-G~~~~~l~~~~~~-~~~v~~vD~s~~~~~~a~~~ 91 (110)
+.++.+|+-+| +|. |..+..+++..+. ..+|+++|.+++-++.+++.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 45667888887 564 8888888887532 13699999999988888764
No 362
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=80.62 E-value=7.4 Score=27.08 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=33.3
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
..++.+||-.|+|. |..+..+++..+. ..|++++.+++-.+.++
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDINSEKLALAK 202 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHH
Confidence 45678899999876 7778888888654 23789998888777664
No 363
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=80.13 E-value=8.6 Score=24.17 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=32.6
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+..+|+-+|.|. |..+..++..++. +++..|.++...+..+.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa--~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGA--EVVVPDERPERLRQLES 61 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCC--EEEeccCCHHHHHhhhc
Confidence 457899999997 8888888888866 79999999887766553
No 364
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=80.09 E-value=11 Score=23.01 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPD 83 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~ 83 (110)
....+++|+|.|. -..+..|.+. +- .|+++|+++.
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~-G~--dV~~tDi~~~ 47 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER-GF--DVIATDINPR 47 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH-S---EEEEE-SS-S
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc-CC--cEEEEECccc
Confidence 3556999999997 4555666666 43 5999999987
No 365
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=80.04 E-value=7.1 Score=28.00 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=31.4
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+..+|+-+|+|. |..+...++..+. +|+.+|.++..++.+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa--~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA--TVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHH
Confidence 345799999985 7777777777665 69999999876555443
No 366
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.64 E-value=8.8 Score=26.70 Aligned_cols=45 Identities=20% Similarity=0.400 Sum_probs=33.4
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+||-.|+|. |..+..+++..+. .+++++|.+++..+.+++
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAKE 209 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH
Confidence 45678888888874 7777788887654 368999998877666653
No 367
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=79.40 E-value=5.9 Score=29.11 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=30.4
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNS 87 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~ 87 (110)
..+++|+-+|+|. |......++.++. +|+.+|.++.....
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~ 250 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA--RVIVTEVDPICALQ 250 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEcCCchhhHH
Confidence 3788999999996 7766666776655 79999999865433
No 368
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=79.20 E-value=7.1 Score=30.52 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=31.3
Q ss_pred CeEEEecCCc-Ch-hHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 49 KRALDVGSGS-GY-LTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 49 ~~vldiGcG~-G~-~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
.+|.-||+|+ |. ++..++...+. .|+.+|.+++.++.+.+++..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~ 355 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWD 355 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHH
Confidence 5799999998 43 33434423233 599999999998888776654
No 369
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=78.61 E-value=13 Score=26.07 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=34.0
Q ss_pred cCCCCeEEEecC-C-cChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGS-G-SGYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGc-G-~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.+||-.|+ | .|..+..+++..+. +|++++.+++-.+.++
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~--~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGC--YVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHH
Confidence 457889999998 4 58888889998765 6999998887766654
No 370
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=78.09 E-value=0.85 Score=26.44 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=12.9
Q ss_pred EEEecCCcChhHHHHHHH
Q psy5585 51 ALDVGSGSGYLTTCMALM 68 (110)
Q Consensus 51 vldiGcG~G~~~~~l~~~ 68 (110)
=+|||||.|..--+..+.
T Consensus 6 NIDIGcG~GNTmda~fRs 23 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRS 23 (124)
T ss_pred ccccccCCCcchhhhhhc
Confidence 479999999765554444
No 371
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=78.02 E-value=6.3 Score=29.54 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=31.4
Q ss_pred CCCeEEEecCCc-C-hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 47 NGKRALDVGSGS-G-YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 47 ~~~~vldiGcG~-G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
+-.+|--||+|+ | .++..++.. +. .|+.+|.+++.++.+.+++..
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a-G~--~V~l~d~~~e~l~~~~~~i~~ 50 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA-GH--QVLLYDIRAEALARAIAGIEA 50 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC-CC--eEEEEeCCHHHHHHHHHHHHH
Confidence 345688899986 4 444445554 33 599999999999887665544
No 372
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=77.94 E-value=9 Score=25.54 Aligned_cols=46 Identities=26% Similarity=0.284 Sum_probs=33.8
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
+.++.++|-.|+|. |..+..+++..+.+ +|++++.+++..+.+++.
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~-~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAR-EVVGVDPDAARRELAEAL 141 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC-cEEEECCCHHHHHHHHHc
Confidence 45778888888875 77777788876542 399999988877766543
No 373
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=77.31 E-value=11 Score=27.20 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=32.5
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+||-.|+|. |..+..+++..+. ..++.+|.+++-++.+++
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga-~~vi~~d~~~~r~~~a~~ 228 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGA-AVVIVGDLNPARLAQARS 228 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHH
Confidence 45677887788875 7777888887664 246677888877777664
No 374
>KOG2811|consensus
Probab=76.98 E-value=6.9 Score=28.38 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=29.4
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEE---EeCCHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVG---IDHIPDLVNS 87 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~---vD~s~~~~~~ 87 (110)
+...++|+|||-|.++..++...+ +.+++- +|-...-++.
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~-~~~~~l~vlvdR~s~R~K~ 224 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQ-IQNVYLFVLVDRKSSRLKF 224 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhc-cccEEEEEeecccchhhhh
Confidence 346899999999999999999975 455655 6655544433
No 375
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=76.57 E-value=13 Score=24.25 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=28.8
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEH-GKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~ 91 (110)
.+++++-+|.| .++..+++.+... .+|+++|.+++.++.....
T Consensus 27 ~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 27 EGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEEAVARAAEL 70 (200)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 56789999998 4555554443222 2799999998776665443
No 376
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=76.37 E-value=16 Score=24.02 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=30.4
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~~~~~ 93 (110)
.++++|-.|. +|.++..+++.+-.++ +|+.++-++..++.....+.
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~ 55 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK 55 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 4578888884 5677777776554333 78888888766655544443
No 377
>KOG0822|consensus
Probab=76.20 E-value=19 Score=27.66 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=29.9
Q ss_pred CeEEEecCCcChhHHHHHH---HhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 49 KRALDVGSGSGYLTTCMAL---MMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~---~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
.+|+-+|.|.|=+.-+..+ ....+-++++||.++.++-..+.
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~ 413 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN 413 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh
Confidence 4789999999955544433 33345589999999988766543
No 378
>PRK06153 hypothetical protein; Provisional
Probab=75.92 E-value=11 Score=27.53 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=25.2
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
+..+|+-+|||- |...+..+.+.+- ++++.+|.+.
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GV-geI~LVD~D~ 210 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPV-REIHLFDGDD 210 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCC-CEEEEECCCE
Confidence 456899999995 6655555554455 6899999873
No 379
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=75.72 E-value=12 Score=20.99 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=28.3
Q ss_pred eEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy5585 50 RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 93 (110)
-|+|.-.|||...+.+.+..+..+-++..-.++-++..+++.+.
T Consensus 4 LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~ 47 (81)
T PF10609_consen 4 LIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAID 47 (81)
T ss_dssp EEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 48999999999999999998766667777666666555555443
No 380
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=75.57 E-value=2.5 Score=30.58 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=31.9
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNS 87 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~ 87 (110)
++++|||+|.|.|....++-..++.-..++.+|.|+..-+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV 153 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKV 153 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHH
Confidence 56789999999999888888877544467888988765433
No 381
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=75.52 E-value=9.5 Score=29.82 Aligned_cols=44 Identities=25% Similarity=0.138 Sum_probs=30.2
Q ss_pred CeEEEecCCc-ChhHHH-HHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 49 KRALDVGSGS-GYLTTC-MALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 49 ~~vldiGcG~-G~~~~~-l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
.+|.-||+|+ |..... ++...+. .|+.+|.+++.++.+..++..
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~ 350 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWK 350 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHH
Confidence 4789999997 544333 3322233 599999999998888766543
No 382
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=75.44 E-value=8.4 Score=28.19 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=26.4
Q ss_pred CeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 49 KRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 49 ~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
++|--+|+|- |..+-.+....++ +|+++|+++.-++..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln 40 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH--EVVCVDIDESKVELLN 40 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHh
Confidence 3566677774 5555455555456 6999999998777664
No 383
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=75.37 E-value=5.4 Score=30.97 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=24.8
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
+..+||-+|||+ |......+-..|- ++++.+|.+.
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GV-g~ItlVD~D~ 372 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGV-RHITFVDNGK 372 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCC-CeEEEEcCCE
Confidence 467999999997 6544444444465 6899998764
No 384
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=75.03 E-value=14 Score=25.54 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=32.8
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.+||-.|+|. |..+..+++..+. +++.++.+++-.+.++
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~--~vi~~~~~~~~~~~~~ 204 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGF--RTVAISRGSDKADLAR 204 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHH
Confidence 45677899999765 7777778887654 6999999887766664
No 385
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=74.96 E-value=14 Score=25.31 Aligned_cols=43 Identities=30% Similarity=0.345 Sum_probs=33.0
Q ss_pred cCCCCeEEEecCC-cChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSG-SGYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG-~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++..||-.|+| .|..+..+++..+. +|++++.+++..+.++
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~--~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGF--ETVAITRSPDKRELAR 203 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHH
Confidence 4567788888987 57777778887654 6999999988777664
No 386
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=74.68 E-value=16 Score=25.03 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=26.6
Q ss_pred CeEEEecCCc-C-hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 49 KRALDVGSGS-G-YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 49 ~~vldiGcG~-G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
++|--||+|. | .++..++.. +. +|+.+|.+++.++.+++.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-G~--~V~~~d~~~~~~~~~~~~~ 47 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-GM--DVWLLDSDPAALSRGLDSI 47 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CC--eEEEEeCCHHHHHHHHHHH
Confidence 4677888874 3 333333333 32 6999999998887665544
No 387
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=74.42 E-value=27 Score=25.35 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHH
Q psy5585 34 HAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGE-HGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 34 ~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~-~~~v~~vD~s~~~~~~a~~~ 91 (110)
...+...+.........++-+|+| .++..+++.+.. ...|+.+|.+++.++..++.
T Consensus 217 l~~~~~~~~~~~~~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 217 IRAVMSEFGRLEKPVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEE 273 (453)
T ss_pred HHHHHHHhCccCCCCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 333444443222345678888885 555555554432 23799999999988877654
No 388
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=74.24 E-value=12 Score=26.62 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=27.9
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPD 83 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~ 83 (110)
.++.+|+-.|+|. |..+..+++..+. +|++++.+++
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga--~Vi~~~~~~~ 213 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL--RVTVISRSSE 213 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC--eEEEEeCChH
Confidence 3677888899875 7888888888765 6888887754
No 389
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=74.10 E-value=26 Score=24.09 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=33.2
Q ss_pred cCCCCeEEEecC-C-cChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGS-G-SGYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGc-G-~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.+||-.|. | .|..+..+++..+. +|++++-+++-.+.++
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~--~Vi~~~~s~~~~~~~~ 180 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGC--KVVGAAGSDEKVAYLK 180 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHH
Confidence 567789988884 3 58888888888665 6999998887766664
No 390
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=73.97 E-value=18 Score=23.69 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=29.1
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~~~~ 92 (110)
.+++++|-.|+ +|.++..+++.+...+ +|++++-+....+...+.+
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Confidence 36678888884 5666666666543323 7888888876554444333
No 391
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=73.53 E-value=5.5 Score=30.02 Aligned_cols=40 Identities=20% Similarity=0.105 Sum_probs=26.3
Q ss_pred CeEEEecCCcChhHHHHHHHhCCC-cEEEEEeCCHHHHHHHHH
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEH-GKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~ 90 (110)
..++-+||| ..+..+++....+ -.++.+|.+++.++.+++
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~ 458 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE 458 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 456666666 5555555543222 269999999998888763
No 392
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=73.44 E-value=13 Score=24.79 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=25.1
Q ss_pred CeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHHH
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSSV 89 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~ 89 (110)
++++-+|||. ++..+++.+...+ .|+.+|.+++.++...
T Consensus 1 m~iiIiG~G~--vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~ 40 (225)
T COG0569 1 MKIIIIGAGR--VGRSVARELSEEGHNVVLIDRDEERVEEFL 40 (225)
T ss_pred CEEEEECCcH--HHHHHHHHHHhCCCceEEEEcCHHHHHHHh
Confidence 3577788874 3344444333222 6999999999887743
No 393
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=73.37 E-value=16 Score=25.68 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=32.6
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.+||-.|+|. |..+..+++..+. .++++++.++.-.+.++
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~-~~v~~~~~~~~k~~~~~ 228 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGC-TTIIAVDIVDSRLELAK 228 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHH
Confidence 45677888888865 7777888888654 36999999887666554
No 394
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=73.29 E-value=18 Score=25.09 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=26.6
Q ss_pred CeEEEecCCc-C-hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 49 KRALDVGSGS-G-YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 49 ~~vldiGcG~-G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
++|.-+|+|. | .++..+++. +. +|+++|.+++.++.++...
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-G~--~V~v~d~~~~~~~~~~~~~ 45 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-GH--EVRLWDADPAAAAAAPAYI 45 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-CC--eeEEEeCCHHHHHHHHHHH
Confidence 3577888775 3 333334443 33 6999999998877766543
No 395
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=72.66 E-value=17 Score=24.84 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=32.2
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+||-.|+|. |..+..+++..+. ++++++-+++..+.+++
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~--~vi~~~~~~~~~~~~~~ 197 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGP--DVVLVGRHSEKLALARR 197 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEEcCCHHHHHHHHH
Confidence 45678888888764 6666666777654 58999988887777764
No 396
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=72.63 E-value=11 Score=26.60 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=27.8
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPD 83 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~ 83 (110)
.++.+||-.|+|. |..++.+++..+. ++++++.+++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga--~vi~~~~~~~ 218 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISSSSN 218 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCcc
Confidence 4677888899986 8888888888765 6888877754
No 397
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=72.57 E-value=23 Score=23.28 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=27.7
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGE-HGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~-~~~v~~vD~s~~~~~~a~~~~ 92 (110)
+++++|-.|+ +|.++..+++.+.. ..+|+.++-+++.++...+.+
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 55 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAAL 55 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 5677888885 45556665554422 237889988876555444433
No 398
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=72.47 E-value=6.1 Score=30.21 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=25.7
Q ss_pred CeEEEecCCcChhHHHHHHHhCC-CcEEEEEeCCHHHHHHHHH
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGE-HGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~-~~~v~~vD~s~~~~~~a~~ 90 (110)
..|+-+|+| ..+..+++.... .-+++.+|.|++.++.+++
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK 441 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 356666655 555555543322 1269999999999888764
No 399
>PRK06949 short chain dehydrogenase; Provisional
Probab=71.98 E-value=25 Score=23.06 Aligned_cols=44 Identities=25% Similarity=0.245 Sum_probs=28.4
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~~~ 91 (110)
.++++|-.| |+|.++..+++.+...+ +|++++-+++.++.....
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~ 52 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAE 52 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 456788888 55666666666554333 688888887665554443
No 400
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=71.84 E-value=9.8 Score=28.57 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=31.4
Q ss_pred CCeEEEecCCc-C-hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy5585 48 GKRALDVGSGS-G-YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94 (110)
Q Consensus 48 ~~~vldiGcG~-G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 94 (110)
-.+|--||+|+ | .++..++.. +. .|+..|.+++.++.+.+++..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~a-G~--~V~l~D~~~e~l~~~~~~i~~ 52 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQA-GH--TVLLYDARAGAAAAARDGIAA 52 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CC--eEEEEeCCHHHHHHHHHHHHH
Confidence 35788889986 4 445555555 33 599999999999887666654
No 401
>PRK08703 short chain dehydrogenase; Provisional
Probab=71.60 E-value=25 Score=22.88 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=26.9
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEH-GKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~ 91 (110)
++++++-.|+ +|.++..+++.+... .+|+.++-++...+.....
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~ 49 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDA 49 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHH
Confidence 3467888885 455566665554332 3788888887655544333
No 402
>KOG2918|consensus
Probab=71.42 E-value=17 Score=25.78 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=41.3
Q ss_pred ccceecChhhHHHHHHHHHhhcCCCCeEEEecCCcChhHHHHHHHhC-CCcEEEEEeCCHHHHHHH
Q psy5585 24 YKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMG-EHGKAVGIDHIPDLVNSS 88 (110)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~-~~~~v~~vD~s~~~~~~a 88 (110)
.|.......+...+..++.. ......|+.+|||.=.+...|...+. ...+++=||.++.....+
T Consensus 65 RGy~~R~~aI~~~v~~Fl~~-~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 65 RGYWARTMAIRHAVRAFLEQ-TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred chhhHHHHHHHHHHHHHHHh-cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 33333334444445555543 44556899999999888888888752 345677888887665554
No 403
>PRK07326 short chain dehydrogenase; Provisional
Probab=71.06 E-value=22 Score=22.98 Aligned_cols=41 Identities=20% Similarity=0.060 Sum_probs=25.4
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCC-cEEEEEeCCHHHHHHHH
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEH-GKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~ 89 (110)
+..+|-.|. +|.++..+++.+... .+|++++-++.......
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 467888884 666666666654322 36888887765544443
No 404
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.02 E-value=16 Score=25.05 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=27.1
Q ss_pred CeEEEecCCc-C-hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 49 KRALDVGSGS-G-YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 49 ~~vldiGcG~-G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
++|.-+|+|. | .++..++.. +. +|+.+|.+++.++.+.+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-G~--~V~l~d~~~~~~~~~~~~i 47 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-GY--DVLLNDVSADRLEAGLATI 47 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CC--eEEEEeCCHHHHHHHHHHH
Confidence 4688888886 3 333334433 23 6999999998887765443
No 405
>PLN02494 adenosylhomocysteinase
Probab=70.94 E-value=14 Score=27.69 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=29.5
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDL 84 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~ 84 (110)
..+++++-+|+|. |......++.++. +|+++|.++..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga--~VIV~e~dp~r 289 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA--RVIVTEIDPIC 289 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchh
Confidence 4688999999996 7777777777665 69999998754
No 406
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=70.62 E-value=19 Score=24.96 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=30.0
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
.+.+++-+|+|. |......++..+. +|+.+|.++...+.++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~ 192 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA--NVTVGARKSAHLARIT 192 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHH
Confidence 578999999986 6666666666554 7999999977554443
No 407
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.61 E-value=22 Score=24.58 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=26.6
Q ss_pred CeEEEecCCc-C-hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 49 KRALDVGSGS-G-YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 49 ~~vldiGcG~-G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
++|.-||+|. | .++..+++. +. +|+.+|.+++.++.+.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-g~--~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-GL--QVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-CC--eEEEEECCHHHHHHHHHH
Confidence 4678888885 3 333333333 22 699999999888877654
No 408
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=69.85 E-value=19 Score=24.76 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=31.5
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
++.+||..|+|. |..+..+++..+. .++++++.++...+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH
Confidence 677888888875 7777778887543 258999988877776543
No 409
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=69.84 E-value=9.2 Score=22.97 Aligned_cols=34 Identities=29% Similarity=0.291 Sum_probs=21.8
Q ss_pred CCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 48 GKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 48 ~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
+.+|+-+|||. |......+.+.+. ++++-+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-GKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-CceeecCCcc
Confidence 46899999984 5444433333355 5799998774
No 410
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=69.65 E-value=28 Score=22.92 Aligned_cols=45 Identities=29% Similarity=0.364 Sum_probs=28.7
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~~~~ 92 (110)
+++++|-.| |+|.++..+++.+...+ +|+.++-+..-++.....+
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i 56 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHL 56 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 456788888 45667777766553322 6888888776555544433
No 411
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=69.60 E-value=9.1 Score=27.70 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=23.7
Q ss_pred eEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 50 RALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 50 ~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+|--+|.|. |.-...+... +. +|+++|++++.++..++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~--~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NH--EVVALDILPSRVAMLND 40 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CC--cEEEEECCHHHHHHHHc
Confidence 455566663 4333333323 33 59999999999887765
No 412
>KOG1252|consensus
Probab=69.37 E-value=7.7 Score=27.78 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=27.7
Q ss_pred CCCeEEEecCCcC----hhHHHHHHHhCCCcEEEEEeCCHHH
Q psy5585 47 NGKRALDVGSGSG----YLTTCMALMMGEHGKAVGIDHIPDL 84 (110)
Q Consensus 47 ~~~~vldiGcG~G----~~~~~l~~~~~~~~~v~~vD~s~~~ 84 (110)
..-.++..|.||| ..+.++.++ +++.+|+++|.....
T Consensus 211 g~vDi~V~gaGTGGTitgvGRylke~-~~~~kVv~vdp~~S~ 251 (362)
T KOG1252|consen 211 GKVDIFVAGAGTGGTITGVGRYLKEQ-NPNIKVVGVDPQESI 251 (362)
T ss_pred CCCCEEEeccCCCceeechhHHHHHh-CCCCEEEEeCCCcce
Confidence 3345888899987 456677777 577899999998754
No 413
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=69.37 E-value=30 Score=23.62 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=29.0
Q ss_pred ecChhhHHHHHHHHHhhc--CCCCeEEEecCCcChhHHHHHHHh---C-CCcEEEEEeC
Q psy5585 28 ISAPHMHAHALELLREHL--ENGKRALDVGSGSGYLTTCMALMM---G-EHGKAVGIDH 80 (110)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~--~~~~~vldiGcG~G~~~~~l~~~~---~-~~~~v~~vD~ 80 (110)
+........+...+...+ .-...|+|+||-.|..++.++... + .+-++++.|-
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDS 111 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDS 111 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 334445555555555333 345689999999998887765532 2 2336888774
No 414
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=69.23 E-value=22 Score=24.53 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=32.3
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.+||..|+|. |..++.+++..+. +|+++..+++..+.++
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~--~v~~~~~s~~~~~~~~ 200 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGA--RVIVVDIDDERLEFAR 200 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEECCCHHHHHHHH
Confidence 45777898888874 7788888888654 6888888877766654
No 415
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=69.13 E-value=16 Score=27.34 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=24.5
Q ss_pred CeEEEecCCcChhHHHHHHHh---CCCcEEEEEeCCHHHHHHHH
Q psy5585 49 KRALDVGSGSGYLTTCMALMM---GEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~---~~~~~v~~vD~s~~~~~~a~ 89 (110)
++|.-+|+|- .+..++-.+ +..-+|+++|++++-++..+
T Consensus 2 m~I~ViG~Gy--vGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~ 43 (473)
T PLN02353 2 VKICCIGAGY--VGGPTMAVIALKCPDIEVVVVDISVPRIDAWN 43 (473)
T ss_pred CEEEEECCCH--HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHH
Confidence 4677887775 333333322 22236999999998877754
No 416
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=68.74 E-value=11 Score=27.67 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=28.5
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++|--+|. |+.+..++..+...-+|+++|+++..++..+
T Consensus 5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 3466766655 5666666666544337999999998877765
No 417
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=68.48 E-value=10 Score=24.65 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=22.9
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCC
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHI 81 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s 81 (110)
...+|+-+|||. |......+...+. ++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCC
Confidence 557899999995 5443333333344 579999988
No 418
>PRK08328 hypothetical protein; Provisional
Probab=68.33 E-value=10 Score=25.30 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=23.4
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
...+|+-+|||. |......+.+.+. ++++.+|.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gv-g~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGV-GRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 456899999994 5544444444355 6799998664
No 419
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=68.05 E-value=7.8 Score=29.81 Aligned_cols=40 Identities=30% Similarity=0.412 Sum_probs=27.3
Q ss_pred CeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 49 KRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 49 ~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
..|+-+|+|. |..........+. +++.+|.|++.++.+++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~~~~ 441 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGV--KMTVLDHDPDHIETLRK 441 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCC--CEEEEECCHHHHHHHHh
Confidence 5788888875 5544333333222 59999999999988864
No 420
>PRK07814 short chain dehydrogenase; Provisional
Probab=67.95 E-value=33 Score=22.79 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=26.2
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCC-CcEEEEEeCCHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGE-HGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~-~~~v~~vD~s~~~~~~a~~ 90 (110)
+++++|-.|. +|.++..+++.+.. ..+|+.++-+++-++...+
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~ 52 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAE 52 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4567888884 56666666654432 2278888887765544433
No 421
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=67.87 E-value=27 Score=24.08 Aligned_cols=44 Identities=18% Similarity=0.446 Sum_probs=30.7
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.+||..|+|. |..++.+++..+. .++++++.++...+.++
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAK 209 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHH
Confidence 45677888878763 7777778887652 36888888776665554
No 422
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=67.62 E-value=8.1 Score=27.32 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=33.8
Q ss_pred eecChhhHHHHHHHHHhhcCCCC-eEEEecCCcChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 27 TISAPHMHAHALELLREHLENGK-RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 27 ~~~~~~~~~~~~~~l~~~~~~~~-~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
++.-.......+..++.....+. .++.+|.|.|+....+.+.+.+ |+|.|+--
T Consensus 224 YIHV~DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~---vtg~~ip~ 277 (329)
T COG1087 224 YIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKK---VTGRDIPV 277 (329)
T ss_pred eeehhHHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHH---HhCCcCce
Confidence 33334444444444443223444 6999999999999999888754 77766543
No 423
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=67.57 E-value=4.2 Score=28.11 Aligned_cols=47 Identities=30% Similarity=0.297 Sum_probs=35.3
Q ss_pred HHHHHhhcCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q psy5585 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSS 88 (110)
Q Consensus 38 ~~~l~~~~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a 88 (110)
+..+.++++.+.+.+|.-||.|...+.+... . +++.-|++++++..=
T Consensus 16 ~~~i~~~lP~~~~y~EPF~GggaV~i~~~~~-~---~~i~~Din~~Lvn~y 62 (274)
T COG0338 16 LDQIIPHLPEGVSYIEPFVGGGAVFINLAAK-K---KYILNDINPDLVNLY 62 (274)
T ss_pred HHHHHHhCCCCceeeCCccCcceeeeehhhh-h---hhhHhcCCHHHHHHH
Confidence 3334344555559999999999999988886 2 389999999887654
No 424
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=67.26 E-value=26 Score=24.74 Aligned_cols=44 Identities=20% Similarity=0.507 Sum_probs=30.8
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++..||-.|+|. |..+..+++..+. .+++++|.++.-.+.++
T Consensus 174 ~~~g~~vlI~g~g~vg~~~~~~a~~~G~-~~vi~~~~~~~~~~~~~ 218 (375)
T cd08282 174 VQPGDTVAVFGAGPVGLMAAYSAILRGA-SRVYVVDHVPERLDLAE 218 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHH
Confidence 45677777788874 7777777777542 26888988877666554
No 425
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=67.00 E-value=12 Score=24.83 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=23.1
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
...+|+-+|||. |.-....+.+.+. ++++.+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv-g~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV-GKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 456899999994 5444444444455 5788887664
No 426
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=66.16 E-value=12 Score=26.59 Aligned_cols=35 Identities=29% Similarity=0.257 Sum_probs=23.1
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
...+|+-+|||. |......+.+.+. ++++.+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv-g~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI-GKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 456899999995 5433333333344 5799999884
No 427
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=66.07 E-value=28 Score=24.51 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=29.3
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSS 88 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a 88 (110)
.++.+++-.|+|. |..+..+++..+. +++.++.+++....+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~--~vi~~~~~~~~~~~~ 220 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGH--HVTVISSSDKKREEA 220 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHH
Confidence 4677888888875 7777888888654 588888777554443
No 428
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=65.82 E-value=13 Score=24.20 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCCeEEEecCCc-Ch-hHHHHHHHhCCCcEEEEEeCC
Q psy5585 47 NGKRALDVGSGS-GY-LTTCMALMMGEHGKAVGIDHI 81 (110)
Q Consensus 47 ~~~~vldiGcG~-G~-~~~~l~~~~~~~~~v~~vD~s 81 (110)
...+|+-+|||. |. .+..+++. +. ++++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~-Gv-g~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA-GI-GKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc-CC-CEEEEECCC
Confidence 456899999995 44 44444444 44 479999998
No 429
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=65.71 E-value=13 Score=25.06 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=23.6
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
...+|+-+|||. |......+.+.+- ++++.+|.+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 346899999995 5544444444454 5799988775
No 430
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=65.57 E-value=21 Score=25.69 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=27.7
Q ss_pred CeEEEecCCc-Ch--hHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy5585 49 KRALDVGSGS-GY--LTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 49 ~~vldiGcG~-G~--~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~ 91 (110)
++|+-+|+|. |. +...+.+. +. .|+++|.++..++..++.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~-g~--~V~~vd~~~~~v~aL~~q 43 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN-GF--EVTFVDVNQELIDALNKR 43 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC-CC--eEEEEECCHHHHHHHhcC
Confidence 4688999986 54 34445444 33 599999988877776544
No 431
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=65.48 E-value=29 Score=24.24 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=30.3
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
++.+||-.|+|. |..+..+++..+. ++|++++.+++-.+.++
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~ 219 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGA-RRVIVIDGSPERLELAR 219 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH
Confidence 667888888765 7777777887654 36999988877665553
No 432
>PRK07576 short chain dehydrogenase; Provisional
Probab=65.38 E-value=38 Score=22.57 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=26.0
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSSV 89 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~ 89 (110)
+++++|-.|. +|.++..+++.+...+ +|+.++-+++-++...
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 50 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAV 50 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4567887774 5666666655443333 6888888776554443
No 433
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=65.19 E-value=26 Score=24.29 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=31.5
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.++|-.|+|. |..+..+++..+. ..|+.++.+++..+.++
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~-~~v~~~~~~~~~~~~~~ 204 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGA-TKVVVTDIDPSRLEFAK 204 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHH
Confidence 45777888888775 7778888888654 13888888877666554
No 434
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=65.12 E-value=26 Score=24.26 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=33.8
Q ss_pred cCCCCeEEEecC-C-cChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGS-G-SGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGc-G-~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+||-.|+ | .|..+..+++..+. +|++++.+++-.+.+++
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~--~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGC--YVVGSAGSDEKVDLLKN 194 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH
Confidence 567889999997 3 48888888888765 68888888877666654
No 435
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=65.10 E-value=30 Score=23.75 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=31.8
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHh-CCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMM-GEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~-~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.+||-.|+|. |..+..+++.. +. ++++++-+++-.+.++
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~--~v~~~~~~~~~~~~~~ 204 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVFNA--KVIAVDINDDKLALAK 204 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCChHHHHHHH
Confidence 56778899889764 67777777763 44 6999998887777664
No 436
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=64.61 E-value=12 Score=25.69 Aligned_cols=41 Identities=22% Similarity=0.157 Sum_probs=30.1
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSS 88 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a 88 (110)
+...|+.+|+|- |..+...+.+.+- ++++-+|.+.-.+...
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGi-g~itlID~D~v~vTN~ 70 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGI-GRITLIDMDDVCVTNT 70 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCC-CeEEEEeccccccccc
Confidence 557899999985 7776666666565 6899999987554443
No 437
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=64.58 E-value=18 Score=24.73 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=24.6
Q ss_pred eEEEecCCc--ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 50 RALDVGSGS--GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 50 ~vldiGcG~--G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+|.-+|+|. |.++..+.+. +. +|+++|.+++.++.+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~--~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GH--TVYGVSRRESTCERAIE 41 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CC--EEEEEECCHHHHHHHHH
Confidence 466678774 3344444444 22 69999999987776653
No 438
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=64.34 E-value=31 Score=24.47 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=32.8
Q ss_pred cCCCCeEEEecC-C-cChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGS-G-SGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGc-G-~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+++-.|+ | .|..+..+++..+. +++.++.+++-.+.+++
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G~--~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAGA--NPVAVVSSEEKAEYCRA 236 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHH
Confidence 456779999997 4 47777888888654 67888888877777654
No 439
>PRK07454 short chain dehydrogenase; Provisional
Probab=64.33 E-value=37 Score=22.07 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=26.6
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~~ 90 (110)
..+++|-.|+ +|.++..+++.+..++ +|+.++-++.-.+...+
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAA 48 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3457888885 5666666666543322 78888888765444433
No 440
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=64.00 E-value=29 Score=23.75 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=31.0
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.++|.+|+|. |..+..+++..+. .+++.++.+++..+.++
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~ 201 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGA-SRVTVAEPNEEKLELAK 201 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHH
Confidence 45678898888763 6677777777543 13888888887776654
No 441
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=63.99 E-value=25 Score=25.64 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=27.1
Q ss_pred CeEEEecCCcChhHHHHHHHhCC--CcEEEEEeCCHHHHHHHHHH
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGE--HGKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~--~~~v~~vD~s~~~~~~a~~~ 91 (110)
++||-||||. .+...+..... +.+|+..|-+.+.++.+...
T Consensus 2 ~~ilviGaG~--Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~ 44 (389)
T COG1748 2 MKILVIGAGG--VGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL 44 (389)
T ss_pred CcEEEECCch--hHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh
Confidence 4789999964 44444433222 25899999998777776544
No 442
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=63.98 E-value=31 Score=24.47 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=30.5
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.+||-.|+|. |..++.+++..+. .+|++++.+++-.+.++
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~-~~vi~~~~~~~~~~~~~ 245 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGA-SKVIAFEISEERRNLAK 245 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHH
Confidence 45677888778875 6667777777543 26899988877555544
No 443
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=63.92 E-value=43 Score=22.81 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=33.0
Q ss_pred cCCCCeEEEecC--CcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGS--GSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGc--G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+||-.|. |.|..++.+++..+. +|++++-+++-.+.+++
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~--~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGC--KVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH
Confidence 457788988884 348888888888765 69999888876666653
No 444
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=63.69 E-value=23 Score=25.85 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=25.5
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLV 85 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~ 85 (110)
++++++-.| |+|.++..+++.+..++ +|++++-+++.+
T Consensus 177 ~gK~VLITG-ASgGIG~aLA~~La~~G~~Vi~l~r~~~~l 215 (406)
T PRK07424 177 KGKTVAVTG-ASGTLGQALLKELHQQGAKVVALTSNSDKI 215 (406)
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 456788777 56777777777553333 788888776543
No 445
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=63.68 E-value=25 Score=25.47 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=27.0
Q ss_pred eEEEecCCcChhHHHHHHHhCCC-cEEEEEeCCHHHHHHHHH
Q psy5585 50 RALDVGSGSGYLTTCMALMMGEH-GKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~ 90 (110)
+|+-+|+ |..+..+++.+... ..|+.+|.+++.++.+++
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~ 41 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQD 41 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence 5677776 56666666654322 279999999988777654
No 446
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.66 E-value=38 Score=22.48 Aligned_cols=37 Identities=22% Similarity=0.118 Sum_probs=23.0
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCc-EEEEEeCCHH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHG-KAVGIDHIPD 83 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~-~v~~vD~s~~ 83 (110)
+++.+|-.|.++ +.++.++++.+-..+ +|+.++.++.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~ 47 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDK 47 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChh
Confidence 456788888776 356666665543322 6777777654
No 447
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=63.61 E-value=34 Score=24.06 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=31.1
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.+||-.|+|. |..+..+++..+. ..+++++.+++-.+.++
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~-~~v~~~~~~~~~~~~~~ 225 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGA-SRIIAVDINKDKFEKAK 225 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHH
Confidence 45677888888865 7777777787654 24788888877666653
No 448
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=63.13 E-value=15 Score=24.69 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=23.4
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
...+|+-+|||. |......+-+.+- ++++.+|.+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV-g~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV-GKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 446899999984 5444433333355 6899999775
No 449
>PRK10083 putative oxidoreductase; Provisional
Probab=63.05 E-value=37 Score=23.35 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=30.9
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHH-hCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALM-MGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~-~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+|+-.|+|. |..+..+++. .+. ..+++++.+++-.+.+++
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~-~~v~~~~~~~~~~~~~~~ 204 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNV-KAVIVADRIDERLALAKE 204 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHH
Confidence 45678899899764 6666666664 343 258889988877766653
No 450
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=62.88 E-value=19 Score=22.86 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=29.6
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVN 86 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~ 86 (110)
.+++|.-+|+|. |......++.++. +|+++|.+.....
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGM--RVIGYDRSPKPEE 73 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCc--eeEEecccCChhh
Confidence 678999999985 7776777777765 7999999987655
No 451
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=62.68 E-value=36 Score=22.37 Aligned_cols=40 Identities=25% Similarity=0.207 Sum_probs=23.8
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHH
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSS 88 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a 88 (110)
++++|-.| |+|.++..+++.+...+ +|+.++-+....+..
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~ 46 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLA 46 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 45677777 44555666665543323 677777776655443
No 452
>PLN02702 L-idonate 5-dehydrogenase
Probab=62.48 E-value=36 Score=23.88 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=31.5
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++..++-+|+|. |..+..+++..+. ..+++++.++...+.++
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~ 223 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGA-PRIVIVDVDDERLSVAK 223 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHH
Confidence 45677888888764 7777888887654 25888988877666554
No 453
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=62.41 E-value=16 Score=25.14 Aligned_cols=35 Identities=23% Similarity=0.141 Sum_probs=23.6
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
...+|+-+|||. |......+.+.+- ++++.+|.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV-g~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI-GAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 567899999994 5444444433344 5799999884
No 454
>PRK07774 short chain dehydrogenase; Provisional
Probab=62.13 E-value=41 Score=21.90 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=26.1
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEH-GKAVGIDHIPDLVNSSVKN 91 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~ 91 (110)
.++++|-.| |+|.++..+++.+-.. .+|+.++-++...+.....
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~ 49 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQ 49 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 346777777 4456666666644322 3788888876554444333
No 455
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=61.86 E-value=18 Score=24.35 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=22.9
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
...+|+-+|||. |......+...|- ++++.+|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 557899999984 5444444344344 5788888764
No 456
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=60.92 E-value=40 Score=23.30 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=29.8
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.++|-.|+|. |..+..+++..+. .++++++.++.-...++
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~ 208 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAK 208 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH
Confidence 34667777788764 6666677777652 36888988876655554
No 457
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=60.91 E-value=39 Score=23.95 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=30.1
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.+||-.|+|. |..+..+++..+. .+|+.++-++.-.+.++
T Consensus 188 ~~~g~~VlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~a~ 232 (373)
T cd08299 188 VTPGSTCAVFGLGGVGLSAIMGCKAAGA-SRIIAVDINKDKFAKAK 232 (373)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH
Confidence 45677888888764 6666666666543 26999988877666653
No 458
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.62 E-value=14 Score=24.55 Aligned_cols=44 Identities=27% Similarity=0.155 Sum_probs=30.1
Q ss_pred CCCCeEEEecCC-cChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 46 ENGKRALDVGSG-SGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 46 ~~~~~vldiGcG-~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
...+.+|-+|.- +|.....++.. ..+|+.+|+.+.|-.....++
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~---~~~vtv~Di~p~~r~~lp~~v 87 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK---ADKVTVVDIHPFMRGFLPNNV 87 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc---cceEEEecCCHHHHhcCCCCc
Confidence 466789999987 36555544443 457999999998765554333
No 459
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.60 E-value=34 Score=25.46 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=27.6
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVN 86 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~ 86 (110)
.++++|+-+|.|. |..+..++...+. +|++.|..+..++
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~--~v~~~D~~~~~~~ 49 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGA--RPTVCDDDPDALR 49 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHH
Confidence 4667899999995 6666655555444 7999998765443
No 460
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=60.57 E-value=17 Score=24.95 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=21.2
Q ss_pred eEEEecCCcChhHHHHHHHhCCCcEEEEEeCC
Q psy5585 50 RALDVGSGSGYLTTCMALMMGEHGKAVGIDHI 81 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s 81 (110)
+||-.| |+|.++..+.+.+...++|+++|..
T Consensus 2 ~iLVtG-~~GfiGs~l~~~L~~~g~V~~~~~~ 32 (299)
T PRK09987 2 NILLFG-KTGQVGWELQRALAPLGNLIALDVH 32 (299)
T ss_pred eEEEEC-CCCHHHHHHHHHhhccCCEEEeccc
Confidence 567777 5678888777766544568877654
No 461
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=60.53 E-value=35 Score=24.52 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=23.3
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCC
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHI 81 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s 81 (110)
.+.+|+-+|||. |......+...+. ++++.+|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv-g~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV-GTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 567899999984 5544443334355 579999988
No 462
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=60.47 E-value=18 Score=25.72 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=23.1
Q ss_pred CCCeEEEecCCc-Chh-HHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGS-GYL-TTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~-~~~l~~~~~~~~~v~~vD~s~ 82 (110)
...+|+-+|||. |.. +..|+.. +. ++++.+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a-Gv-g~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA-GV-GKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CC-CeEEEEeCCc
Confidence 456899999994 543 3344444 44 5799999873
No 463
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=60.39 E-value=34 Score=23.29 Aligned_cols=37 Identities=16% Similarity=-0.006 Sum_probs=28.1
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
..+.+|+-||.|..++.+.. .+++.-|+++..+..=+
T Consensus 26 ~~~yvEPF~Gggsv~l~~~~-----~~~~lND~n~~Li~~~~ 62 (266)
T TIGR00571 26 FNCLVEPFVGGGAVFFNLNP-----KRYLLNDINEDLINLYK 62 (266)
T ss_pred cCEEEEecCCcchhheeecC-----cEEEEecCCHHHHHHHH
Confidence 35899999999998876532 24888899998866543
No 464
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=60.09 E-value=25 Score=23.96 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=29.5
Q ss_pred CeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
..+|-+|.- ..+.++|+....+++|+.+|+.|.+.+....++
T Consensus 43 k~~lI~G~Y--ltG~~iA~~L~~~~eV~lvDI~p~lk~ll~~~i 84 (252)
T PF06690_consen 43 KQALIFGAY--LTGNFIASALSKKCEVTLVDIHPHLKELLNENI 84 (252)
T ss_pred ceEEEEEEE--eehHHHHHHhccCceEEEEeCcHHHHHHhcCCC
Confidence 389999876 334455555555558999999999887764443
No 465
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=59.81 E-value=34 Score=23.62 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=24.7
Q ss_pred CeEEEecCCc-Ch-hHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 49 KRALDVGSGS-GY-LTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 49 ~~vldiGcG~-G~-~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
.+|.-+|+|. |. ++..+.+. +...+|+++|.+++..+.++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~~~a~ 48 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSAETRARAR 48 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCHHHHHHHH
Confidence 5788888875 32 22333333 22126999999988766654
No 466
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=59.63 E-value=40 Score=23.35 Aligned_cols=42 Identities=12% Similarity=0.282 Sum_probs=30.4
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
++..||-.|+|. |..+..+++..+. .+|+.++.++.-.+.++
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~ 217 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGP-ANIIVVDIDEAKLEAAK 217 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHH
Confidence 567888888774 7777778887654 26888888877666653
No 467
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=59.57 E-value=20 Score=23.66 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=23.1
Q ss_pred CCCeEEEecCCc-Chh-HHHHHHHhCCCcEEEEEeCC
Q psy5585 47 NGKRALDVGSGS-GYL-TTCMALMMGEHGKAVGIDHI 81 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~-~~~l~~~~~~~~~v~~vD~s 81 (110)
+..+|+-+|||. |.. +..|++. +. ++++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~-Gv-g~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS-GV-GNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc-CC-CeEEEEeCC
Confidence 556899999995 544 4444444 55 579999998
No 468
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=59.46 E-value=4.2 Score=27.16 Aligned_cols=31 Identities=23% Similarity=0.130 Sum_probs=22.6
Q ss_pred CeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHH
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPD 83 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~ 83 (110)
-++|||||=+......-...+ .|+.||+++.
T Consensus 53 lrlLEVGals~~N~~s~~~~f----dvt~IDLns~ 83 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWF----DVTRIDLNSQ 83 (219)
T ss_pred ceEEeecccCCCCcccccCce----eeEEeecCCC
Confidence 489999998666555444444 3999999973
No 469
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=59.35 E-value=41 Score=23.23 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=30.4
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.+++-.|+|. |..+..+++..+. +++.++.+++..+.++
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~--~v~~~~~~~~~~~~~~ 210 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGA--EVTAFSRSPSKKEDAL 210 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC--eEEEEcCCHHHHHHHH
Confidence 34566777788764 6777777777544 7999998887776664
No 470
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=59.13 E-value=21 Score=24.94 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=27.7
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
.++..+.|+-.|||..+.++-+.+ . +|++-|+-.
T Consensus 26 ~s~k~f~DiFaGtGVV~~~fkk~~-n--~iiaNDle~ 59 (330)
T COG3392 26 LSGKIFCDIFAGTGVVGRFFKKAG-N--KIIANDLEY 59 (330)
T ss_pred cCCCeeeeeccCccHHHHHHHHhc-c--hhhhchHHH
Confidence 466689999999999999999985 4 488877653
No 471
>KOG1201|consensus
Probab=59.01 E-value=47 Score=23.42 Aligned_cols=46 Identities=28% Similarity=0.237 Sum_probs=34.1
Q ss_pred CCCeEEEecCCcC---hhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 47 NGKRALDVGSGSG---YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 47 ~~~~vldiGcG~G---~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
++..||-=|.|.| .++..++++. . +++.+|++.+..+...+.++..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg-~--~~vl~Din~~~~~etv~~~~~~ 85 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG-A--KLVLWDINKQGNEETVKEIRKI 85 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC-C--eEEEEeccccchHHHHHHHHhc
Confidence 5678888888887 3455555552 3 6899999998888887777764
No 472
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=58.95 E-value=18 Score=26.38 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=23.1
Q ss_pred CeEEEecCCc-C-hhHHHHHHHhCCCcEEEEEeCCHHHHHH
Q psy5585 49 KRALDVGSGS-G-YLTTCMALMMGEHGKAVGIDHIPDLVNS 87 (110)
Q Consensus 49 ~~vldiGcG~-G-~~~~~l~~~~~~~~~v~~vD~s~~~~~~ 87 (110)
++|.-+|.|. | .++..|++. +. +|+++|.++..++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~-G~--~V~~~D~~~~~v~~ 41 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR-QK--QVIGVDINQHAVDT 41 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC-CC--EEEEEeCCHHHHHH
Confidence 4677787774 2 222333333 33 69999999987775
No 473
>PRK12828 short chain dehydrogenase; Provisional
Probab=58.85 E-value=46 Score=21.35 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=20.3
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCC-cEEEEEeCCHH
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEH-GKAVGIDHIPD 83 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~ 83 (110)
++++|-.|. +|.++..+++.+..+ .+|++++-++.
T Consensus 7 ~k~vlItGa-tg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (239)
T PRK12828 7 GKVVAITGG-FGGLGRATAAWLAARGARVALIGRGAA 42 (239)
T ss_pred CCEEEEECC-CCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence 456776664 466666665544322 26788777654
No 474
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=58.77 E-value=21 Score=25.51 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=23.2
Q ss_pred CCCeEEEecCCc-ChhH-HHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGS-GYLT-TCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~-~~l~~~~~~~~~v~~vD~s~ 82 (110)
...+|+-+|||. |... ..|+.. |- ++++.+|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~-Gv-g~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGA-GV-GHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHc-CC-CeEEEEeCCE
Confidence 457899999995 5433 444444 54 5799998875
No 475
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=58.57 E-value=37 Score=23.22 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=22.0
Q ss_pred CeEEEecCCcChhHHHHHHHhCCCc-EEEEE
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEHG-KAVGI 78 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~~-~v~~v 78 (110)
++||-+| ++|.++..+.+.+...+ .++++
T Consensus 1 MriLI~G-asG~lG~~l~~~l~~~~~~v~~~ 30 (286)
T PF04321_consen 1 MRILITG-ASGFLGSALARALKERGYEVIAT 30 (286)
T ss_dssp EEEEEET-TTSHHHHHHHHHHTTTSEEEEEE
T ss_pred CEEEEEC-CCCHHHHHHHHHHhhCCCEEEEe
Confidence 4677777 45888888888887655 68887
No 476
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=58.55 E-value=50 Score=21.70 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=20.3
Q ss_pred CeEEEecCCcChhHHHHHHHhCCC-cEEEEEeCCHHHHHH
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEH-GKAVGIDHIPDLVNS 87 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~ 87 (110)
+++|-.|. +|.++..+++.+... .+|+.++-+....+.
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~ 41 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAAN 41 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 35666664 455555555444322 267777776554433
No 477
>PRK07102 short chain dehydrogenase; Provisional
Probab=58.42 E-value=49 Score=21.55 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=23.1
Q ss_pred CeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHH
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSS 88 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a 88 (110)
++++-.|+ +|.++..+++.+-..+ +|++++.++.-.+..
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~ 41 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERL 41 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence 35777774 4566666555543333 688888877654433
No 478
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=58.19 E-value=20 Score=21.65 Aligned_cols=30 Identities=40% Similarity=0.388 Sum_probs=18.6
Q ss_pred eEEEecCCc-Chh-HHHHHHHhCCCcEEEEEeCC
Q psy5585 50 RALDVGSGS-GYL-TTCMALMMGEHGKAVGIDHI 81 (110)
Q Consensus 50 ~vldiGcG~-G~~-~~~l~~~~~~~~~v~~vD~s 81 (110)
+|+-+|||. |.. +..|++. +. ++++.+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv-~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GV-GKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC-CEEEEEcCC
Confidence 477889973 443 3333333 44 579999877
No 479
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=58.08 E-value=20 Score=22.75 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=20.8
Q ss_pred eEEEecCCc-Chh-HHHHHHHhCCCcEEEEEeCCH
Q psy5585 50 RALDVGSGS-GYL-TTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 50 ~vldiGcG~-G~~-~~~l~~~~~~~~~v~~vD~s~ 82 (110)
+|+-+|||. |.. +..+++. +. ++++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CC-CeEEEEeCCE
Confidence 478899984 543 4444444 44 5799999886
No 480
>PRK05993 short chain dehydrogenase; Provisional
Probab=58.03 E-value=52 Score=22.09 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=22.2
Q ss_pred CCeEEEecCCcChhHHHHHHHhCCC-cEEEEEeCCHHHHH
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGEH-GKAVGIDHIPDLVN 86 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~ 86 (110)
++++|-.|++ |.++..+++.+... .+|++++-+++.++
T Consensus 4 ~k~vlItGas-ggiG~~la~~l~~~G~~Vi~~~r~~~~~~ 42 (277)
T PRK05993 4 KRSILITGCS-SGIGAYCARALQSDGWRVFATCRKEEDVA 42 (277)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 3467777763 55555555544322 26777777765544
No 481
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.98 E-value=46 Score=24.20 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=22.3
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCC-cEEEEEeCCH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEH-GKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~-~~v~~vD~s~ 82 (110)
.+++++-+|.|. .+..+++.+-.. .+|+++|.++
T Consensus 4 ~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCc
Confidence 356889999876 444555443222 2799999985
No 482
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=57.02 E-value=53 Score=22.81 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=31.4
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 90 (110)
+.++.+|+-.|+|. |..+..+++..+. .+|++++.+++-.+.+++
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~-~~v~~~~~~~~~~~~~~~ 215 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGA-SKIIVSEPSEARRELAEE 215 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH
Confidence 45677888888764 6666677777543 268899888877776643
No 483
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=56.91 E-value=52 Score=21.97 Aligned_cols=43 Identities=19% Similarity=0.358 Sum_probs=30.9
Q ss_pred cCCCCeEEEecC--CcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGS--GSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGc--G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++..++..|| +.|..+..+++..+. +|+.++.+++..+.+.
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~--~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGA--RVIAAASSEEKLALAR 181 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCC--EEEEEeCCHHHHHHHH
Confidence 456789999998 246677777777554 6899888877665553
No 484
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=56.88 E-value=23 Score=24.92 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=23.2
Q ss_pred eEEEecCCcChhHHHHHHHh---CCCcEEEEEeCCH
Q psy5585 50 RALDVGSGSGYLTTCMALMM---GEHGKAVGIDHIP 82 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~---~~~~~v~~vD~s~ 82 (110)
..+-+++|+|....-++..+ +++-+|+++|+..
T Consensus 186 d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 186 DSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 45667778877666555543 4667999999976
No 485
>PRK08251 short chain dehydrogenase; Provisional
Probab=56.64 E-value=53 Score=21.39 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=23.0
Q ss_pred CeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q psy5585 49 KRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSSVK 90 (110)
Q Consensus 49 ~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~~ 90 (110)
+++|-.|+ +|.++..+++.+..++ +|+.++-++...+....
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKA 44 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 45676674 4556666555543222 67777777655544433
No 486
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.27 E-value=53 Score=21.28 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=23.8
Q ss_pred CCeEEEecCCcChhHHHHHHHhCC-CcEEEEEeCCHHHHHH
Q psy5585 48 GKRALDVGSGSGYLTTCMALMMGE-HGKAVGIDHIPDLVNS 87 (110)
Q Consensus 48 ~~~vldiGcG~G~~~~~l~~~~~~-~~~v~~vD~s~~~~~~ 87 (110)
++.++-.|+ +|.++..+++.+-. ..+|+.++-++...+.
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~ 46 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKA 46 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 456777774 56677766665422 2268888777654443
No 487
>KOG2305|consensus
Probab=56.19 E-value=17 Score=24.87 Aligned_cols=44 Identities=25% Similarity=0.258 Sum_probs=27.8
Q ss_pred eEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy5585 50 RALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95 (110)
Q Consensus 50 ~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 95 (110)
+|--+|+|- |.....+....|- +|.-.|+.+..+..|.+++++.
T Consensus 5 ki~ivgSgl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Ke 49 (313)
T KOG2305|consen 5 KIAIVGSGLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKE 49 (313)
T ss_pred ceeEeecccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHH
Confidence 455556653 3333333333232 6999999999999988887664
No 488
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=55.91 E-value=20 Score=28.68 Aligned_cols=43 Identities=16% Similarity=0.097 Sum_probs=34.5
Q ss_pred CCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy5585 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92 (110)
Q Consensus 47 ~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~ 92 (110)
....++|.-.|.|.+.+..++.+ . .|+++|.+|.+.-..+..+
T Consensus 90 ~~~~~lDPfAG~GSIPlEAlRLG-~--~v~AvelnPvAylfLKavl 132 (875)
T COG1743 90 EGPKLLDPFAGGGSIPLEALRLG-L--EVVAVELNPVAYLFLKAVL 132 (875)
T ss_pred cCCcccccccCCCccchHHHhcC-c--eeEEEecccHHHHHHHHHH
Confidence 44579999999999999999995 3 5999999997755554443
No 489
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=55.88 E-value=34 Score=23.99 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=25.7
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLV 85 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~ 85 (110)
+..+|.-+|+|. |......+...+-..+++-+|++++.+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~ 41 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKL 41 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHH
Confidence 345899999976 554444444434444799999988543
No 490
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=55.86 E-value=21 Score=25.88 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCCeEEEecCCc-Ch-hHHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGS-GY-LTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~-G~-~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
...+|+-+|||. |. .+..|+.. |. ++++.+|.+.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~-Gv-g~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAA-GV-GTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHc-CC-CeEEEECCCE
Confidence 456899999995 44 33444444 55 5799999775
No 491
>PRK07411 hypothetical protein; Validated
Probab=55.83 E-value=22 Score=25.81 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=23.4
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
...+|+-+|||. |......+...|- ++++.+|.+.
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gv-g~l~lvD~D~ 72 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGI-GRIGIVDFDV 72 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 456899999994 5443333333355 5799998875
No 492
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=55.79 E-value=26 Score=24.89 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=25.6
Q ss_pred CCCCeEEEecCCcChhHHHHHHHhCCCc-EEEEEeCC
Q psy5585 46 ENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHI 81 (110)
Q Consensus 46 ~~~~~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s 81 (110)
..+++||-.| |+|.++..+++.+..++ +|++++..
T Consensus 19 ~~~~~IlVtG-gtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 19 SEKLRICITG-AGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCEEEEEC-CccHHHHHHHHHHHhCCCEEEEEEec
Confidence 4667899887 56888888888765444 78988854
No 493
>PRK08223 hypothetical protein; Validated
Probab=55.69 E-value=24 Score=24.63 Aligned_cols=34 Identities=26% Similarity=0.205 Sum_probs=24.5
Q ss_pred CCCeEEEecCCc-Ch-hHHHHHHHhCCCcEEEEEeCCH
Q psy5585 47 NGKRALDVGSGS-GY-LTTCMALMMGEHGKAVGIDHIP 82 (110)
Q Consensus 47 ~~~~vldiGcG~-G~-~~~~l~~~~~~~~~v~~vD~s~ 82 (110)
...+|+-+|||- |. .+..|+.. +- ++++.+|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~a-GV-G~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARL-GI-GKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHh-CC-CeEEEEeCCC
Confidence 557899999994 54 45555555 55 5799999875
No 494
>PRK08017 oxidoreductase; Provisional
Probab=55.59 E-value=48 Score=21.66 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=20.4
Q ss_pred eEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHH
Q psy5585 50 RALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVN 86 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~ 86 (110)
++|-.|+ +|.++..+++.+...+ +|+.++-+++.++
T Consensus 4 ~vlVtGa-sg~IG~~la~~l~~~g~~v~~~~r~~~~~~ 40 (256)
T PRK08017 4 SVLITGC-SSGIGLEAALELKRRGYRVLAACRKPDDVA 40 (256)
T ss_pred EEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHhH
Confidence 5777776 4555555555443222 6777777665443
No 495
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=55.58 E-value=40 Score=25.35 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=28.0
Q ss_pred CCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHH
Q psy5585 46 ENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLV 85 (110)
Q Consensus 46 ~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~ 85 (110)
-.+++++-+|+|. |......++.++. +|+.+|.++...
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a 290 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGA--RVVVTEIDPICA 290 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhH
Confidence 3778999999996 6666666666554 799998886543
No 496
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.53 E-value=67 Score=23.68 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=29.5
Q ss_pred CCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHH-HHHHHHHHHHhhccccc
Q psy5585 47 NGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPD-LVNSSVKNVEKSHKALL 100 (110)
Q Consensus 47 ~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~~ 100 (110)
.+++|+-+|.|. |..+..++...+. +|+++|.++. ......+.+...++...
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~gv~~~ 68 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEALGATVR 68 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHcCCEEE
Confidence 456899999984 4433333333233 6999996653 33333444555565543
No 497
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=55.47 E-value=55 Score=22.34 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=29.8
Q ss_pred cCCCCeEEEecCCc-ChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGS-GYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
+.++.++|-.|+|. |..+..+++..+ .+++.++-+++..+.++
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g--~~v~~~~~~~~~~~~~~ 208 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQG--AEVFAFTRSGEHQELAR 208 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEcCChHHHHHHH
Confidence 45677888888764 566666777654 37899988877666553
No 498
>PHA00684 hypothetical protein
Probab=55.09 E-value=29 Score=21.20 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=17.3
Q ss_pred eEEEecCCc-ChhHHHHHHHhCC
Q psy5585 50 RALDVGSGS-GYLTTCMALMMGE 71 (110)
Q Consensus 50 ~vldiGcG~-G~~~~~l~~~~~~ 71 (110)
-|=+||||. |+....++..+..
T Consensus 78 ~VT~IGCGiAG~~~~eIAplF~~ 100 (128)
T PHA00684 78 QVTRVGCGLAGHLDADIAPMFRD 100 (128)
T ss_pred EeeeeccccccCCHHHHHHHHhc
Confidence 578999997 7778888887753
No 499
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=54.90 E-value=28 Score=21.67 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=22.4
Q ss_pred eEEEecCCcChhHHHHHHHhCCCc-EEEEEeCCHHHHHHHH
Q psy5585 50 RALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSSV 89 (110)
Q Consensus 50 ~vldiGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~ 89 (110)
+|-=||+| ..+..+++++...+ .|++.|.+++..+...
T Consensus 3 ~Ig~IGlG--~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~ 41 (163)
T PF03446_consen 3 KIGFIGLG--NMGSAMARNLAKAGYEVTVYDRSPEKAEALA 41 (163)
T ss_dssp EEEEE--S--HHHHHHHHHHHHTTTEEEEEESSHHHHHHHH
T ss_pred EEEEEchH--HHHHHHHHHHHhcCCeEEeeccchhhhhhhH
Confidence 34456664 55555655543222 6999999987766654
No 500
>PRK10904 DNA adenine methylase; Provisional
Probab=54.90 E-value=28 Score=23.87 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=29.0
Q ss_pred cCCCCeEEEecCCcChhHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy5585 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89 (110)
Q Consensus 45 ~~~~~~vldiGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 89 (110)
++...+.+|.-||.|...+.+ .+ .+++.-|++++.+..=+
T Consensus 25 ~P~~~~yvEPF~GggaV~l~~----~~-~~~ilND~n~~Lin~y~ 64 (271)
T PRK10904 25 LPKGECLIEPFVGAGSVFLNT----DF-SRYILADINSDLISLYN 64 (271)
T ss_pred CCCCCcEEeccCCcceeeEec----CC-CeEEEEeCCHHHHHHHH
Confidence 334468999999999987754 22 24778899998866543
Done!