RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5585
(110 letters)
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 129 bits (326), Expect = 4e-39
Identities = 53/100 (53%), Positives = 62/100 (62%), Gaps = 6/100 (6%)
Query: 1 MNQVDRGNF----CSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGS 56
M VDR F Y D P SIGY TISAPHMHA LELL L+ G R L++GS
Sbjct: 25 MLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHMHAMMLELLE--LKPGMRVLEIGS 82
Query: 57 GSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
GSGYLT C A M+GE G V I+HIP+LV + +N+EK
Sbjct: 83 GSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKLG 122
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 101 bits (253), Expect = 4e-28
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 1 MNQVDRGNFC----SHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGS 56
+ V R F Y+D P IGY TISAPHM A ELL L+ G + L++G+
Sbjct: 29 LLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGT 86
Query: 57 GSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
GSGY +A ++G G V I+ IP+L + + + K
Sbjct: 87 GSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK 124
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 78.4 bits (194), Expect = 3e-19
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 1 MNQVDRGNFC----SHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGS 56
V R F H Y D IG TISAPHM A L+LL L+ G R L++G+
Sbjct: 24 FLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGT 81
Query: 57 GSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
GSGY +A ++ G+ V I+ I +L + +N+E
Sbjct: 82 GSGYQAAVLARLV---GRVVSIERIEELAEQARRNLET 116
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 73.5 bits (181), Expect = 2e-17
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 15 YLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGK 74
Y+D P IGY TISA HM A ELL L+ G + L++G+GSGY +A ++G+ GK
Sbjct: 46 YVDTPLEIGYGQTISAIHMVAIMCELL--DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGK 103
Query: 75 AVGIDHIPDLVNSSVKNVEK 94
V I+ IP+L + K ++K
Sbjct: 104 VVTIERIPELAEKAKKTLKK 123
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 54.4 bits (132), Expect = 3e-10
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 1 MNQVDRGNFCS----HNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGS 56
+ R F H Y + IG TIS P+M A ELL L+ G R L++G+
Sbjct: 30 IEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVLEIGT 87
Query: 57 GSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
GSGY +A ++ ++ I L + + +++
Sbjct: 88 GSGYQAAVLAHLV-RR--VFSVERIKTLQWEAKRRLKQ 122
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 51.3 bits (123), Expect = 4e-09
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 25 KVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDL 84
++ ++ + A AL LR L G LD+G G+G +T +L++GE GK +D
Sbjct: 20 EIPMTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKA 77
Query: 85 VNSSVKNVEK 94
+N + +N EK
Sbjct: 78 INLTRRNAEK 87
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 50.6 bits (121), Expect = 8e-09
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 12 HNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGE 71
Y D P + TISAPHM A EL+ G + L+VG+GSGY A +
Sbjct: 39 MMAYEDRPLPLFAGATISAPHMVAMMCELIEP--RPGMKILEVGTGSGYQAAVCAEAIER 96
Query: 72 HGKAVGIDHIPDLVNSSVKNVEK 94
GK ++ + +L + +N+E+
Sbjct: 97 RGKVYTVEIVKELAIYAAQNIER 119
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 45.8 bits (109), Expect = 5e-07
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 27 TISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLV 85
++SAPH+ A LE +E G R L++GSG GY +A ++G G+ +D D+
Sbjct: 64 SVSAPHIQAMMLEQAG--VEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVT 119
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 45.4 bits (108), Expect = 7e-07
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
LE L + L+ GK LDVG GSG L A + K VG+D P V ++ +N +
Sbjct: 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNG 209
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 44.2 bits (105), Expect = 2e-06
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVN 86
A ELL ++ G R LDVG G G +A +G G+ VGID ++
Sbjct: 9 ARTFELL--AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLA 58
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This
family appears to be have methyltransferase activity.
Length = 151
Score = 42.8 bits (101), Expect = 3e-06
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
L++G + LD+G G+GYLT +A +G + VGID + + + +N +K
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKK 50
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 41.8 bits (98), Expect = 1e-05
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 27 TISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVN 86
T S P + A +E + L+ G R L++G G+GY M+ ++GE G V +++ +
Sbjct: 62 TSSQPSLMALFMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICE 119
Query: 87 SSVKNVEK 94
+ +NV +
Sbjct: 120 IAKRNVRR 127
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 41.0 bits (96), Expect = 2e-05
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93
LE L + K +DVG GSG L+ +A + K VGID P V S+ KN E
Sbjct: 150 LEWLEDLDLKDKNVIDVGCGSGILS--IAALKLGAAKVVGIDIDPLAVESARKNAE 203
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 41.1 bits (97), Expect = 3e-05
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
LE L ++ G+ LDVG GSG L AL +G K VG+D P V ++ +N E +
Sbjct: 151 LEALESLVKPGETVLDVGCGSGILAIA-ALKLG-AKKVVGVDIDPVAVRAAKENAELNG 207
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 40.5 bits (96), Expect = 4e-05
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDL-VNSSVKNVE 93
LE L + + GK LDVG GSG L A +G K + +D I V ++ +N E
Sbjct: 110 LEALEKLVLPGKTVLDVGCGSGILAI-AAAKLG-AKKVLAVD-IDPQAVEAARENAE 163
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 39.5 bits (93), Expect = 6e-05
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 26 VTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLV 85
++ + A L LR G R D+G+G+G +T AL G G+ + I+ + +
Sbjct: 15 GPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDEEAL 71
Query: 86 NSSVKNVEK 94
+N +
Sbjct: 72 ELIERNAAR 80
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In
many organisms, this protein is fused to the CbiE
subunit. The fused protein, when found in organisms
catalyzing the oxidative version of the cobalamin
biosynthesis pathway, is called CobL [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 124
Score = 38.1 bits (89), Expect = 1e-04
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNS 87
++ + A L LR L G D+G+G+G +T A ++ G+ I+ P+ ++
Sbjct: 2 MTKREVRALTLSKLR--LRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIERNPEALDL 58
Query: 88 SVKNVEK 94
+N+ +
Sbjct: 59 IERNLRR 65
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 38.0 bits (89), Expect = 2e-04
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 39 ELLREHL--ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
LL E+ + G R L+VG+GSG + A K VG+D P V + N + ++
Sbjct: 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNN 69
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 38.1 bits (89), Expect = 3e-04
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVL 106
KR L++G+ GY MAL + + G+ I+ + + +N+ ++ +D L
Sbjct: 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG---VDDRIEL 115
Query: 107 LVS 109
L+
Sbjct: 116 LLG 118
>gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional.
Length = 322
Score = 36.8 bits (86), Expect = 9e-04
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 39 ELLREHLEN--GKRALDVGSGSGYLTTCMALMMGEHGK-AVGID 79
+ + HL G+ LDVG G+GY M M+G K VGID
Sbjct: 112 DRVLPHLSPLKGRTVLDVGCGNGYH---MWRMLGAGAKLVVGID 152
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 36.5 bits (85), Expect = 0.001
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
G R L+ G+GSG LT +A +G G + D ++ +N+ +
Sbjct: 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE 141
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 35.8 bits (83), Expect = 0.002
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 40 LLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
L L+ KR LD+G+GSG + +A G + + +D PD + + +N E+
Sbjct: 103 ALALLLQLDKRILDLGTGSGAIAIALA-KEGPDAEVIAVDISPDALALARENAER 156
>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
This model represents the
S-adenosylmethionine-dependent O-methyltransferase
responsible for methylation of magnesium protoporphyrin
IX. This step is essentiasl for the biosynthesis of both
chlorophyll and bacteriochlorophyll. This model
encompasses two closely related clades, from
cyanobacteria (and plants) where it is called ChlM and
other photosynthetic bacteria where it is known as BchM
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 219
Score = 35.2 bits (81), Expect = 0.002
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 33 MHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92
M L+ L + GKR LD G G+G L+ +A G KAV D+ V+
Sbjct: 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELA-KRGAIVKAV------DISEQMVQMA 93
Query: 93 EKSHKALLDSGRV 105
+ +G V
Sbjct: 94 RNRAQGRDVAGNV 106
>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase. Members of this
family are O-methyltransferases. The family includes
catechol o-methyltransferase, caffeoyl-CoA
O-methyltransferase and a family of bacterial
O-methyltransferases that may be involved in antibiotic
production.
Length = 204
Score = 34.3 bits (79), Expect = 0.005
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
L +L + L KR L++G +GY AL + E GK D
Sbjct: 33 GQFLSMLLK-LIGAKRTLEIGVFTGYSLLATALALPEDGKITACD 76
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 33.4 bits (77), Expect = 0.005
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95
G R LD+G G+G L + + G+D P+++ + +N + +
Sbjct: 2 GARVLDIGCGTGSL-AIELARLFPGARVTGVDLSPEMLELARENAKLA 48
>gnl|CDD|184963 PRK15001, PRK15001, SAM-dependent 23S ribosomal RNA mG1835
methyltransferase; Provisional.
Length = 378
Score = 34.2 bits (78), Expect = 0.007
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 11 SHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKR-------------ALDVGSG 57
+ P DAPQ++ +K+ + +H HA R L+ G R +D+G G
Sbjct: 179 NEPPLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCG 238
Query: 58 SGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLD 101
+G + + L K V +D P V SS NVE + LD
Sbjct: 239 NGVIGLTL-LDKNPQAKVVFVDESPMAVASSRLNVETNMPEALD 281
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 33.8 bits (78), Expect = 0.010
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95
L+ G+ LD+GSG G+ A +G GK +G+D P+++ + N K+
Sbjct: 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA 125
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 33.7 bits (74), Expect = 0.012
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 13 NPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEH 72
Y + + + ++ + + L L G LD+G G+G L +A + G
Sbjct: 14 ELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRL-ALLARLGGRG 72
Query: 73 GKAVGIDHIPDLVNSSVKNVEKSHKALLD 101
VG+D P+++ + E + L+D
Sbjct: 73 AYVVGVDLSPEMLALARARAEGAGLGLVD 101
>gnl|CDD|149213 pfam08003, Methyltransf_9, Protein of unknown function (DUF1698).
This family contains many hypothetical proteins. It also
includes two putative methyltransferase proteins.
Length = 315
Score = 32.7 bits (75), Expect = 0.020
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGK-AVGID 79
G+ LDVG G+GY M M+GE VGID
Sbjct: 116 GRTILDVGCGNGYH---MWRMLGEGAALVVGID 145
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 154
Score = 31.7 bits (72), Expect = 0.033
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 30 APHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV-GID 79
A L L L+ G R LD+G G+G L ++ E G V G+D
Sbjct: 5 RERFLARLLARLLPRLKPGGRVLDIGCGTGIL----LRLLRERGFDVTGVD 51
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 31.5 bits (72), Expect = 0.055
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 39 ELLREHLEN--GKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
LL E L G + LD+G G G L L++ + +
Sbjct: 148 RLLLETLPPDLGGKVLDLGCGYGVL----GLVLAKKSPQAKLT 186
>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 30.9 bits (71), Expect = 0.076
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 38 LELLREHLEN--GKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
L +REH GKR LDVG G G L+ MA +G GID
Sbjct: 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMA-RLG--ADVTGID 77
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family
consists of FtsJ from various bacterial and archaeal
sources FtsJ is a methyltransferase, but actually has
no effect on cell division. FtsJ's substrate is the 23S
rRNA. The 1.5 A crystal structure of FtsJ in complex
with its cofactor S-adenosylmethionine revealed that
FtsJ has a methyltransferase fold. This family also
includes the N terminus of flaviviral NS5 protein. It
has been hypothesised that the N-terminal domain of NS5
is a methyltransferase involved in viral RNA capping.
Length = 177
Score = 30.7 bits (70), Expect = 0.083
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
E GK LD+G+ G + L G GK V +D
Sbjct: 10 LEIDERFGLKPGKGKTVLDLGAAPGGFSQV-LLERGGAGKVVAVD 53
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 30.7 bits (70), Expect = 0.11
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEH--GKAVGID 79
LE L L+ G LD+G G G +A+ E VG+
Sbjct: 63 LILEKL--GLKPGMTLLDIGCGWGG----LAIYAAEEYGVTVVGVT 102
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase.
This model represents an O-methyltransferase believed
to act at two points in the ubiquinone biosynthetic
pathway in bacteria (UbiG) and fungi (COQ3). A separate
methylase (MenG/UbiE) catalyzes the single
C-methylation step. The most commonly used names for
genes in this family do not indicate whether this gene
is an O-methyl, or C-methyl transferase [Biosynthesis
of cofactors, prosthetic groups, and carriers,
Menaquinone and ubiquinone].
Length = 224
Score = 30.0 bits (68), Expect = 0.16
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
Query: 38 LELLREHLEN------GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91
L+ +R+ + G R LDVG G G L+ +A + GI D +++
Sbjct: 30 LDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGAN---VTGI----DASEENIE- 81
Query: 92 VEKSHKA 98
V K H
Sbjct: 82 VAKLHAK 88
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of
pimeloyl-CoA (although attribution of this annotation
is not traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 29.9 bits (68), Expect = 0.18
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 32 HMHAHALELLREHLE-NGKRALDVGSGSGYLT 62
M L LL+E LD+G G+GYLT
Sbjct: 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLT 49
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis;
the exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 30.2 bits (68), Expect = 0.18
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 42 REHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
R +++ G ALDV G+ + +A +G G +G+D
Sbjct: 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLD 77
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 29.8 bits (68), Expect = 0.19
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 39 ELLREHLEN--GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
LL HL G + LD+G G G L + +D + S+ N+ +
Sbjct: 21 RLLLSHLPKPLGGKVLDLGCGYGVL-GAALAKRSPDLEVTMVDINARALESARANLAAN- 78
Query: 97 KALLDSGRVL 106
L++G V
Sbjct: 79 --GLENGEVF 86
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the
UbiE enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a
wide distribution of bacteria and eukaryotes, but no
archaea. An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC
2.1.1.17) from Rhodobacter sphaeroides. Note that a
number of non-orthologous genes which are members of
pfam03737 have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 29.5 bits (67), Expect = 0.26
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
A++L+ G++ LDV G+G L +A + GK G+D
Sbjct: 31 AVKLIGVF--KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVD 71
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 29.4 bits (67), Expect = 0.30
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
G + LD+ G+G L +A +G+ G+ VG+D
Sbjct: 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLD 83
>gnl|CDD|129544 TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransferase. This model
describes a set of proteins with homology in its central
region to a large number of methyltransferases active on
a variety of substrates. The similarity includes a motif
resembling ILDVGCG[SG]G. Known examples to date are
restricted to the proteobacteria [Unknown function,
Enzymes of unknown specificity].
Length = 314
Score = 29.5 bits (66), Expect = 0.31
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGK-AVGID 79
G+ LDVG GSGY M M+G K VGID
Sbjct: 122 GRTILDVGCGSGYH---MWRMLGHGAKSLVGID 151
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This
family contains methyltransferase domains.
Length = 117
Score = 28.6 bits (64), Expect = 0.34
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
G R LD G+GSG A G + VG++
Sbjct: 1 GDRVLDPGAGSGAFLLA-AARAGPDARVVGVE 31
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
4-benzoquinol methylase [Coenzyme metabolism].
Length = 243
Score = 28.8 bits (65), Expect = 0.47
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAV-GID 79
G R LDVG G G L+ +A + G +V GID
Sbjct: 60 GLRVLDVGCGGGILSEPLARL----GASVTGID 88
>gnl|CDD|225258 COG2384, COG2384, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 226
Score = 28.8 bits (65), Expect = 0.48
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
L + ++ G R D+GS YL + AV + +P + S+++NV+K++
Sbjct: 7 LTTVANLVKQGARIADIGSDHAYL-PIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN 64
>gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase;
Validated.
Length = 366
Score = 28.5 bits (63), Expect = 0.59
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 10 CSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKR 50
C+H ++ P G ++T+ + + +L++H EN KR
Sbjct: 318 CAHAGFIIRPFPNGVRITVGTREQNEGVISVLQQHFENKKR 358
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 28.1 bits (63), Expect = 0.76
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 29 SAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLV 85
+ P + A LE L +E+G R L++G+G+GY + +G+ ++ P L
Sbjct: 91 TQPSLVARMLEALD--VEDGHRVLEIGTGTGYSAALLCHRLGD-DNVTSVEVDPGLA 144
>gnl|CDD|227205 COG4868, COG4868, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 493
Score = 27.9 bits (62), Expect = 0.99
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 55 GSGSGYLTTCMALMMGEH--GKAVG 77
G GSG L TC++ M + G G
Sbjct: 177 GPGSGKLATCLSQMYHDQIRGIKSG 201
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 27.8 bits (62), Expect = 1.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93
G + LDV G+G T ++ G GK VG+D +++ K +
Sbjct: 48 GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAK 93
>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional.
Length = 377
Score = 27.8 bits (62), Expect = 1.2
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALM-MGEH 72
ALE L LE G GSG +T M L G+H
Sbjct: 53 AALEELIAVLEGGHAGFAFGSGMAAITAVMMLFSSGDH 90
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 27.3 bits (61), Expect = 1.3
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGI 78
A L E L G+R LD+ +GSG L A AV I
Sbjct: 26 ADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDI 67
>gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase,
ribosomal protein L3-specific. Members of this protein
family methylate ribosomal protein L3 on a glutamine
side chain. This family is related to HemK, a
protein-glutamine methyltranferase for peptide chain
release factors [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 284
Score = 27.5 bits (62), Expect = 1.3
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 30/75 (40%)
Query: 9 FCSHNPYLDA----PQS-IGYKVTISAPHMHAHALELLREHL------ENGKRALDVGSG 57
F Y+D P+S I EL+ + E KR LD+ +G
Sbjct: 87 FAGLEFYVDERVLIPRSPIA---------------ELIEDGFAPWLEPEPVKRILDLCTG 131
Query: 58 SGYLTTCMALMMGEH 72
SG C+A+
Sbjct: 132 SG----CIAIACAYA 142
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 27.6 bits (62), Expect = 1.4
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 42 REHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDH 80
++ G + LDV G+G + +A +G G+ VG+D
Sbjct: 46 LLGIKPGDKVLDVACGTGDMALLLAKSVGT-GEVVGLDI 83
>gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
Members of this protein were designated YjeQ and are now
designated RsgA (ribosome small subunit-dependent GTPase
A). The strongest motif in the alignment of these
proteins is GXSGVGKS[ST], a classic P-loop for
nucleotide binding. This protein has been shown to
cleave GTP and remain bound to GDP. A role as a
regulator of translation has been suggested. The Aquifex
aeolicus ortholog is split into consecutive open reading
frames. Consequently, this model was build in fragment
mode (-f option) [Protein synthesis, Translation
factors].
Length = 245
Score = 27.4 bits (61), Expect = 1.4
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 19/85 (22%)
Query: 15 YLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEH-- 72
LD ++IGY+V +++ + L+ L E L+N +++ G+
Sbjct: 89 QLDIYRNIGYQVLMTSSK-NQDGLKELIEALQNR----------------ISVFAGQSGV 131
Query: 73 GKAVGIDHIPDLVNSSVKNVEKSHK 97
GK+ I+ + V V ++
Sbjct: 132 GKSSLINALDPSVKQQVNDISSKLG 156
>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase.
Length = 234
Score = 27.5 bits (61), Expect = 1.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
N K L++G +GY AL + E G+ ID
Sbjct: 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAID 100
>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 27.3 bits (61), Expect = 1.6
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
GK LD+G+G+G L A ++G + + +D P+ + + N E+
Sbjct: 45 EGKTVLDLGAGTGIL-AIGAALLGAS-RVLAVDIDPEALEIARANAEE 90
>gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and
2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR.
TTER is a peroxisomal protein with a proposed role in
fatty acid elongation. Fatty acid synthesis is known to
occur in the both endoplasmic reticulum and
mitochondria; peroxisomal TER has been proposed as an
additional fatty acid elongation system, it reduces the
double bond at C-2 as the last step of elongation.
This system resembles the mitochondrial system in that
acetyl-CoA is used as a carbon donor. TER may also
function in phytol metabolism, reducting phytenoyl-CoA
to phytanoyl-CoA in peroxisomes. DECR processes double
bonds in fatty acids to increase their utility in fatty
acid metabolism; it reduces 2,4-dienoyl-CoA to an
enoyl-CoA. DECR is active in mitochondria and
peroxisomes. This subgroup has the Gly-rich NAD-binding
motif of the classical SDR family, but does not display
strong identity to the canonical active site tetrad,
and lacks the characteristic Tyr at the usual position.
SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta
folding pattern with a central beta-sheet), an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRS are
approximately 350 residues. Sequence identity between
different SDR enzymes are typically in the 15-30%
range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes have a
3-glycine N-terminal NAD(P)(H)-binding pattern
(typically, TGxxxGxG in classical SDRs and TGxxGxxG in
extended SDRs), while substrate binding is in the
C-terminal region. A critical catalytic Tyr residue
(Tyr-151, human 15-hydroxyprostaglandin dehydrogenase
(15-PGDH) numbering), is often found in a conserved
YXXXK pattern. In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) or
additional Ser, contributing to the active site.
Substrates for these enzymes include sugars, steroids,
alcohols, and aromatic compounds. The standard reaction
mechanism is a proton relay involving the conserved Tyr
and Lys, as well as Asn (or Ser). Some SDR family
members, including 17 beta-hydroxysteroid dehydrogenase
contain an additional helix-turn-helix motif that is
not generally found among SDRs.
Length = 249
Score = 27.2 bits (61), Expect = 1.7
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGI 78
GK A G G+G + +A E G +V I
Sbjct: 3 GKVAFITGGGTG-IGKAIAKAFAELGASVAI 32
>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 27.1 bits (61), Expect = 1.8
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 15 YLDAPQSIGYKV--TISAPH--MHAHALELLREHLE-NGKRALDVGSGSGYLTTCMALMM 69
Y DAP S KV T+ A H M L L + G R LD G G G L+ + +
Sbjct: 29 YSDAPVS---KVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLS----IPL 81
Query: 70 GEHG-KAVGIDHIPDLVN 86
G K V D P +V
Sbjct: 82 ARRGAKVVASDISPQMVE 99
>gnl|CDD|234637 PRK00107, gidB, 16S rRNA methyltransferase GidB; Reviewed.
Length = 187
Score = 27.0 bits (61), Expect = 1.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 43 EHLENGKRALDVGSGSG 59
+L G+R LDVGSG+G
Sbjct: 41 PYLPGGERVLDVGSGAG 57
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 26.9 bits (60), Expect = 1.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 23 GYKVTISAPHMHAHALELLREHLENGKRALDVGSGSG 59
G KV ++ + A AL L L K +DVG+G+G
Sbjct: 9 GEKVPMTKEEVRALALSKL--ELHRAKHLIDVGAGTG 43
>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane].
Length = 424
Score = 27.1 bits (60), Expect = 2.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 7 GNFCSHNPYLDAPQSIGYKVTISAPHMHAH--ALELLREHLENG 48
G F L++ I Y+ + A +HAH LE+L LE G
Sbjct: 303 GAFWRSLELLNSRLWIYYEWALRANFLHAHNLYLEIL---LETG 343
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein
family are HemK (PrmC), a protein once thought to be
involved in heme biosynthesis but now recognized to be
a protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein
modification and repair].
Length = 251
Score = 27.0 bits (61), Expect = 2.1
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 36 HALELLREHLENGKRALDVGSGSG 59
ALE L++ R LD+G+GSG
Sbjct: 79 AALERLKK---GPLRVLDLGTGSG 99
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 26.2 bits (58), Expect = 2.4
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 50 RALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
R LD+G G+G L +A G G+D P + + K
Sbjct: 1 RVLDLGCGTGALALALASGPGAR--VTGVDISPVALELARKAAAA 43
>gnl|CDD|185017 PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional.
Length = 388
Score = 26.9 bits (59), Expect = 2.4
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 56 SGSGYLTTCMALMMGEHGKAVGIDHIP---DLVNSSVKN-VEKSHKALLDSGRV 105
SG+GY+ L++ ++ + V +D +P ++N + V+K + L S ++
Sbjct: 6 SGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKI 59
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 25.7 bits (57), Expect = 3.0
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 52 LDVGSGSGYLTTCMALMMGEHGKAVGID 79
LDVG G+G L +A G + G+D
Sbjct: 1 LDVGCGTGLLAEALARRGG--ARVTGVD 26
>gnl|CDD|225256 COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic
ion transport and metabolism].
Length = 299
Score = 26.2 bits (58), Expect = 3.4
Identities = 7/52 (13%), Positives = 10/52 (19%), Gaps = 2/52 (3%)
Query: 7 GNFCSHNPYLDAPQSIGYKVTISAPHMHAHAL--ELLREHLENGKRALDVGS 56
G+ S + A + R L G D
Sbjct: 203 GHVLSQSGSFWWTPLDTQPQGEVAESLKILHAIGTDERIVLTTGGEEGDFLR 254
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters,
contain an N-terminal double-glycine peptidase domain
[Defense mechanisms].
Length = 709
Score = 26.4 bits (59), Expect = 3.4
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 64 CMALMMGEHGKAVGIDHIPDLVNSS 88
C+A++ HGK + ++ + +LV S
Sbjct: 17 CLAMIANYHGKKISLNELRELVGLS 41
>gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW. This
protein is found alongside MetX, of the enzyme that
acylates homoserine as a first step toward methionine
biosynthesis, in many species. It appears to act in
methionine biosynthesis but is not fully characterized
[Amino acid biosynthesis, Aspartate family].
Length = 194
Score = 26.2 bits (58), Expect = 4.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHG 73
LE + + G R LD+G G G L +AL+ E
Sbjct: 4 LESILNLIPPGSRVLDLGCGDGEL---LALLRDEKQ 36
>gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW. This
family consists of several bacterial and one archaeal
methionine biosynthesis MetW proteins. Biosynthesis of
methionine from homoserine in Pseudomonas putida takes
place in three steps. The first step is the acylation
of homoserine to yield an acyl-L-homoserine. This
reaction is catalyzed by the products of the metXW
genes and is equivalent to the first step in
enterobacteria, gram-positive bacteria and fungi,
except that in these microorganisms the reaction is
catalyzed by a single polypeptide (the product of the
metA gene in Escherichia coli and the met5 gene product
in Neurospora crassa). In Pseudomonas putida, as in
gram-positive bacteria and certain fungi, the second
and third steps are a direct sulfhydrylation that
converts the O-acyl-L-homoserine into homocysteine and
further methylation to yield methionine. The latter
reaction can be mediated by either of the two
methionine synthetases present in the cells.
Length = 193
Score = 25.8 bits (57), Expect = 4.2
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
+ + G R LD+G G G L + G+ + +D
Sbjct: 4 FRYIARLIPPGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELD 45
>gnl|CDD|218200 pfam04666, Glyco_transf_54, N-Acetylglucosaminyltransferase-IV
(GnT-IV) conserved region. The complex-type of
oligosaccharides are synthesised through elongation by
glycosyltransferases after trimming of the precursor
oligosaccharides transferred to proteins in the
endoplasmic reticulum. N-Acetylglucosaminyltransferases
(GnTs) take part in the formation of branches in the
biosynthesis of complex-type sugar chains. In
vertebrates, six GnTs, designated as GnT-I to -VI, which
catalyze the transfer of GlcNAc to the core mannose
residues of Asn-linked sugar chains, have been
identified. GnT-IV (EC:2.4.1.145) catalyzes the transfer
of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of
core oligosaccharide [Gn2(22)core oligosaccharide] and
forms GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core
oligosaccharide (Gn3(2,4,2)core oligosaccharide). In
some members the conserved region occupies all but the
very for N-terminal, where there is a signal sequence on
all members. For other members the conserved region does
not occupy the entire protein but is still to the
N-terminus of the protein.
Length = 301
Score = 25.8 bits (57), Expect = 4.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 82 PDLVNSSVKNVEKSHKALLDSGRVLLVS 109
PD V V+N+ K +DSG + ++S
Sbjct: 103 PDYVKQVVQNISKKFPKHIDSGLLEVIS 130
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol
metabolism [Intracellular trafficking and secretion].
Length = 242
Score = 26.1 bits (57), Expect = 4.8
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 12 HNPYLDAPQSIGYKVTISAP 31
N +P+ +G+KV +AP
Sbjct: 26 QNN---SPEPVGFKVKTTAP 42
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 25.6 bits (56), Expect = 5.4
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP 82
G LD+G+ G + +G G+ + +D P
Sbjct: 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP 67
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 25.7 bits (57), Expect = 5.7
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 48 GKRALDVGSGSGYLTTCMALMM---GEHGKAVGIDHIPDLVNSSVKNVEKSHKA 98
R LD+G+G+G L L++ E K VG++ + + +NV +
Sbjct: 45 KGRILDLGAGNGAL----GLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE 94
>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This
family consist of Cyclopropane-fatty-acyl-phospholipid
synthase or CFA synthase EC:2.1.1.79 this enzyme
catalyze the reaction: S-adenosyl-L-methionine +
phospholipid olefinic fatty acid <=>
S-adenosyl-L-homocysteine + phospholipid cyclopropane
fatty acid.
Length = 273
Score = 25.7 bits (57), Expect = 5.7
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 36 HALELLREHLENGKRALDVGSGSGYL 61
L+ L L+ G LD+G G G L
Sbjct: 53 LILDKL--GLKPGMTLLDIGCGWGGL 76
>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase.
Length = 170
Score = 25.4 bits (56), Expect = 6.9
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
+G L++GSG+G + +AL++ G +V I + + + KN+E +
Sbjct: 44 SGLNVLELGSGTGLVGIAVALLLP--GASVTITDLEEAIELMKKNIELNG 91
>gnl|CDD|227783 COG5496, COG5496, Predicted thioesterase [General function
prediction only].
Length = 130
Score = 25.1 bits (55), Expect = 7.1
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 32 HMHAHALELLREHLENGKRALDVGS 56
M + ELL+ +L+NG+ VG+
Sbjct: 39 FMENASYELLQPYLDNGETT--VGT 61
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 25.5 bits (56), Expect = 7.3
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 20/68 (29%)
Query: 10 CSHNPYLDAPQSIGYKVTISAPHMHAH--------------ALELLREHLEN------GK 49
CS + + ++ GYK I A H +LE LR E GK
Sbjct: 608 CSPDLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGK 667
Query: 50 RALDVGSG 57
+ VG G
Sbjct: 668 HVVVVGGG 675
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase
inhibitor.
Length = 541
Score = 25.7 bits (56), Expect = 7.3
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 8 NFCSHNPYLDAP-QSIGYKVTIS-APHMHAHALELLREHLENGKRALDVGSGSG 59
+FC PY DA S+ ++I+ +P++ L+ L+ + + ++ SG+G
Sbjct: 43 SFCKSTPYPDACFDSLKLSISINISPNILNFLLQTLQTAISEAGKLTNLLSGAG 96
>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA. This
protein family was first proposed to be RNA
methyltransferases by homology to the TrmA family. The
member from E. coli has now been shown to act as the 23S
RNA methyltransferase for the conserved U1939. The gene
is now designated rumA and was previously designated
ygcA [Protein synthesis, tRNA and rRNA base
modification].
Length = 431
Score = 25.6 bits (56), Expect = 7.5
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 33 MHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNV 92
+ ALE L L+ + +D G G T +A + VGI+ +P+ V + +N
Sbjct: 280 LVDRALEAL--ELQGEELVVDAYCGVGTFTLPLA---KQAKSVVGIEVVPESVEKAQQNA 334
Query: 93 EK 94
E
Sbjct: 335 EL 336
>gnl|CDD|100091 cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase
(PMM/PGM) bifunctional enzyme catalyzes the reversible
conversion of 1-phospho to 6-phospho-sugars (e.g.
between mannose-1-phosphate and mannose-6-phosphate or
glucose-1-phosphate and glucose-6-phosphate) via a
bisphosphorylated sugar intermediate. The reaction
involves two phosphoryl transfers, with an intervening
180 degree reorientation of the reaction intermediate
during catalysis. Reorientation of the intermediate
occurs without dissociation from the active site of the
enzyme and is thus, a simple example of processivity, as
defined by multiple rounds of catalysis without release
of substrate. Glucose-6-phosphate and
glucose-1-phosphate are known to be utilized for energy
metabolism and cell surface construction, respectively.
PMM/PGM belongs to the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the
phosphoglucomutases (PGM1 and PGM2). Each of these
enzymes has four domains with a centrally located active
site formed by four loops, one from each domain. All
four domains are included in this alignment model.
Length = 443
Score = 25.6 bits (57), Expect = 7.6
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 11 SHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGS 58
SHNP P+ G+K+ I + ++ LRE E G A G GS
Sbjct: 96 SHNP----PEYNGFKIVIGGGPLSGEDIQALRERAEKGDFAAATGRGS 139
>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase.
Length = 278
Score = 25.4 bits (55), Expect = 7.6
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 34 HAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93
A L +L + L +R ++VG +GY + +AL++ E G V + + + + + E
Sbjct: 106 QAQLLAMLVQIL-GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYE 164
Query: 94 K---SHKALLDSG 103
SHK + G
Sbjct: 165 LAGVSHKVNVKHG 177
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
Magnesium-chelatase is a three-component enzyme that
catalyzes the insertion of Mg2+ into protoporphyrin IX.
This is the first unique step in the synthesis of
(bacterio)chlorophyll. Due to this, it is thought that
Mg-chelatase has an important role in channelling inter-
mediates into the (bacterio)chlorophyll branch in
response to conditions suitable for photosynthetic
growth. ChlI and BchD have molecular weight between
38-42 kDa.
Length = 207
Score = 25.2 bits (56), Expect = 7.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 30 APHMHAHALELLREHLENGK 49
P LE LR+ LE+G+
Sbjct: 115 LPEFSRRVLESLRQPLEDGE 134
>gnl|CDD|223434 COG0357, GidB, Predicted S-adenosylmethionine-dependent
methyltransferase involved in bacterial cell division
[Cell envelope biogenesis, outer membrane].
Length = 215
Score = 25.3 bits (56), Expect = 7.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 38 LELLREHLENGKRALDVGSGSG 59
L LL KR LD+GSG+G
Sbjct: 58 LVLLPYLDGKAKRVLDIGSGAG 79
>gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis,
outer membrane].
Length = 329
Score = 25.2 bits (56), Expect = 8.6
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 57 GSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
G+GY+ + + + G V + + +L N + K
Sbjct: 8 GAGYIGSHTVRQLLKTGHEVVV--LDNLSNGHKIALLK 43
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 25.1 bits (56), Expect = 9.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 40 LLREHLENGKRALDVGSGSG 59
L L+ R LD+G+GSG
Sbjct: 101 LEALLLKEPLRVLDLGTGSG 120
>gnl|CDD|237021 PRK11914, PRK11914, diacylglycerol kinase; Reviewed.
Length = 306
Score = 25.1 bits (55), Expect = 9.3
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 35 AHALELLREHLENGKRALDVGSGSG 59
A L+ L G AL V G G
Sbjct: 51 HDARHLVAAALAKGTDALVVVGGDG 75
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.390
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,469,169
Number of extensions: 467922
Number of successful extensions: 696
Number of sequences better than 10.0: 1
Number of HSP's gapped: 685
Number of HSP's successfully gapped: 113
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)