RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5585
(110 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 156 bits (397), Expect = 8e-50
Identities = 65/108 (60%), Positives = 78/108 (72%)
Query: 1 MNQVDRGNFCSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGY 60
M DR ++ NPY+D+PQSIG++ TISAPHMHA+ALELL + L G +ALDVGSGSG
Sbjct: 31 MLATDRSHYAKCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGI 90
Query: 61 LTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108
LT C A M+G GK +GIDHI +LV+ SV NV K LL SGRV LV
Sbjct: 91 LTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 138
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 152 bits (385), Expect = 5e-48
Identities = 58/113 (51%), Positives = 75/113 (66%), Gaps = 5/113 (4%)
Query: 1 MNQVDRGNFCSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGY 60
M + DR ++ NPY+DAPQ IG VTISAPHMHA ALE LR+HL+ G R LDVGSGSGY
Sbjct: 38 MKETDRKHYSPRNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGY 97
Query: 61 LTTCMALMMGEHG-----KAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108
LT C + G + VGI+H +LV S N+ +++LDSG++L+V
Sbjct: 98 LTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 150
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 148 bits (376), Expect = 1e-46
Identities = 50/112 (44%), Positives = 71/112 (63%), Gaps = 4/112 (3%)
Query: 1 MNQVDRGNFCSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGY 60
M QVDRG + PY+D P I + VTISAPHMHA +L+ L L+ G RA+DVGSGSGY
Sbjct: 34 MLQVDRGKYIKEIPYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSGSGY 93
Query: 61 LTTCMALMM----GEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108
LT CMA+ M ++ +G++ + DLVN S++N+++ LL ++
Sbjct: 94 LTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKII 145
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 123 bits (310), Expect = 8e-37
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 1 MNQVDRGNFC----SHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGS 56
+ +V R F Y+D P IGY TISA HM ELL L+ G + L++G+
Sbjct: 29 LLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELL--DLKPGMKVLEIGT 86
Query: 57 GSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108
G GY A ++GE G V I+ IP+L + + + K L V+++
Sbjct: 87 GCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK-----LGYDNVIVI 133
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 122 bits (309), Expect = 2e-36
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 1 MNQVDRGNFC----SHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGS 56
+ R ++D P I T+SAPHM A LE+ +L+ G L+VG+
Sbjct: 43 FLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIA--NLKPGMNILEVGT 100
Query: 57 GSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108
GSG+ ++ ++ I+ IP+LV + +N+E+ V ++
Sbjct: 101 GSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLER-----AGVKNVHVI 145
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 101 bits (255), Expect = 2e-28
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 1 MNQVDRGNFC----SHNPYLDAPQS--IGYKVTISAPHMHAHALELLREHLENGKRALDV 54
N+VDR F Y ++ I + +A ++ L+ L L G++ L++
Sbjct: 20 FNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDEL--DLHKGQKVLEI 77
Query: 55 GSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
G+G GY T +A ++ + V ++ + N + K + +
Sbjct: 78 GTGIGYYTALIAEIVDK---VVSVEINEKMYNYASKLLSYYN 116
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 100 bits (252), Expect = 2e-27
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 16/117 (13%)
Query: 1 MNQVDRGNFC-----SHNPYLDAPQSI----GYKVTISAPHMHAHALELLREHLENGKRA 51
++ R F Y D T S P + A +E + L+ G R
Sbjct: 22 FLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRV 79
Query: 52 LDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSGRVLLV 108
L++G G+GY M+ ++GE G V +++ + + +NVE+ L V+ V
Sbjct: 80 LEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-----LGIENVIFV 131
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 91.5 bits (228), Expect = 1e-24
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 1 MNQVDRGNFC----SHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGS 56
+ V R F + + IG TIS P+M A ELL L R L++G+
Sbjct: 29 LAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--LTPQSRVLEIGT 86
Query: 57 GSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
GSGY T +A ++ ++ I L + + ++
Sbjct: 87 GSGYQTAILAHLVQH---VCSVERIKGLQWQARRRLKN 121
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 59.4 bits (143), Expect = 5e-12
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 15 YLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGK 74
D + I+ P L ++ + G L+ GSGSG ++ ++ +G G+
Sbjct: 75 LEDYVVLMKRGTAITFPKDINMILSMM--DINPGDTVLEAGSGSGGMSLFLSKAVGSQGR 132
Query: 75 AVGIDHIPDLVNSSVKNVEK 94
+ + D + + KN +
Sbjct: 133 VISFEVRKDHHDLAKKNYKH 152
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 56.1 bits (134), Expect = 7e-11
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 2 NQVDRGNFCSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYL 61
+ GN+C + Y + P L +L+ G+ LD+G G+L
Sbjct: 14 RKFQYGNYCKYYGYRN-------------PSCEDGRLRVLKPEWFRGRDVLDLGCNVGHL 60
Query: 62 TTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
T +A G + VG+D L++S+ +N+
Sbjct: 61 TLSIACKWGP-SRMVGLDIDSRLIHSARQNIRH 92
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 54.2 bits (130), Expect = 3e-10
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 15 YLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGK 74
+D ++ + I P + +L ++ G R +D G GSG + +A +G GK
Sbjct: 82 LIDEIMNMKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGK 139
Query: 75 AVGIDHIPDLVNSSVKNVEKSH 96
+ + + N+ K
Sbjct: 140 VFAYEKREEFAKLAESNLTKWG 161
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET:
SAM; 2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 51.8 bits (124), Expect = 1e-09
Identities = 12/70 (17%), Positives = 34/70 (48%)
Query: 27 TISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVN 86
+++ + + + ++ ++ G +D G+G T +A ++GE+G+ G D +
Sbjct: 2 SLTIKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIA 61
Query: 87 SSVKNVEKSH 96
++ K + +
Sbjct: 62 NTTKKLTDLN 71
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; HET: SAH; 2.30A {Bacillus
cereus} PDB: 2gh1_A
Length = 284
Score = 48.8 bits (116), Expect = 3e-08
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 32 HMHAHALELLREH---LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVN 86
+ + + L + +D G G GYL + ++ E K GID L+
Sbjct: 4 YYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA 61
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 47.7 bits (113), Expect = 6e-08
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 6 RGNFCSHNP-YLDAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTC 64
H P + + T + P + + LL G R L+ G+GSG LT
Sbjct: 56 GEELSVHRPTLEEYLLHMKRSATPTYPKDASAMVTLLDLA--PGMRVLEAGTGSGGLTLF 113
Query: 65 MALMMGEHGKAVGIDHIPDLVNSSVKNVE 93
+A +GE G + P + + +NV
Sbjct: 114 LARAVGEKGLVESYEARPHHLAQAERNVR 142
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus
pneumoniae} PDB: 3ku1_A*
Length = 225
Score = 46.8 bits (111), Expect = 1e-07
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
LEL+ + G LDVGS YL + G+ A+ + + S+VKNVE
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG 63
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 46.6 bits (110), Expect = 2e-07
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSG 103
G LD+G G+G + ++GEHGK +G+D + + + + K VE + S
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSP 139
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 46.1 bits (109), Expect = 2e-07
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 17 DAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV 76
D + I P A + + G ++ G GSG LT +A ++G G+ V
Sbjct: 65 DYLDKMKRGPQIVHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVV 122
Query: 77 GIDHIPDLVNSSVKNVEKSH 96
+ D + +N++ +
Sbjct: 123 SYEIREDFAKLAWENIKWAG 142
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural
genomics, midwest CENT structural genomics, protein
structure initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 45.6 bits (108), Expect = 3e-07
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
L+ + ++ G R LDVGS YL L MG A+ + + S++KNV +
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG 69
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 45.0 bits (107), Expect = 6e-07
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
L+ L HL G + LD+G+GSG L A +G GKA+G+D P ++ + N ++
Sbjct: 111 LKALARHLRPGDKVLDLGTGSGVLAI-AAEKLG--GKALGVDIDPMVLPQAEANAKR 164
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 44.5 bits (105), Expect = 9e-07
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
LE + ++ +R D+GS YL C A+ A+ + + S+ K V S
Sbjct: 12 LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG 69
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 44.1 bits (105), Expect = 1e-06
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNS 87
L+LL ++ + L++G+ GY T +A + G+ V ++ +
Sbjct: 40 HDVSPTQGKFLQLL-VQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADI 98
Query: 88 SVKNVEKS 95
+ N+E++
Sbjct: 99 ARSNIERA 106
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 43.7 bits (104), Expect = 1e-06
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
+ + + DVG+GSG L A +G + D + + ++ +N
Sbjct: 51 MLGIERAMVKPLTVADVGTGSGILAI-AAHKLG-AKSVLATDISDESMTAAEENAAL 105
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 43.8 bits (104), Expect = 1e-06
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNS 87
+S + + + L N K+ ++VG +GY AL + + GK ID +
Sbjct: 52 MSTSPLAGQLMSFV-LKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEI 110
Query: 88 SVKNVEKS 95
+ + K+
Sbjct: 111 GLPFIRKA 118
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 43.8 bits (104), Expect = 2e-06
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNS 87
+ A +++L L K+ L++G+ +GY M+L + + G+ + D
Sbjct: 42 MQVAPEQAQFMQML-IRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKH 100
Query: 88 SVKNVEKS 95
+ ++
Sbjct: 101 AHPYWREA 108
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 43.5 bits (103), Expect = 2e-06
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
A L L L K+ALD+G+ +GY +AL + G+ V + +
Sbjct: 58 AQLLANL-ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ 116
Query: 95 S 95
+
Sbjct: 117 A 117
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 43.5 bits (103), Expect = 2e-06
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNS 87
++ L +L L N K +++G +GY AL + E GK + +D +
Sbjct: 61 MTTSADEGQFLSML-LKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL 119
Query: 88 SVKNVEKS 95
+ ++K+
Sbjct: 120 GLPVIKKA 127
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 43.5 bits (102), Expect = 2e-06
Identities = 12/48 (25%), Positives = 15/48 (31%)
Query: 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
H H L+ HL G V G + + VGID
Sbjct: 103 ERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGID 150
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 43.5 bits (102), Expect = 2e-06
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 32 HMHAHALELLRE-HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90
AH L + ++ G++ L++G G G L+ +A +G G GID I +
Sbjct: 27 RQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID-IASPDYGAPL 85
Query: 91 NVEKSHKALLDSG 103
+ ++ LL
Sbjct: 86 TLGQAWNHLLAGP 98
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 43.0 bits (102), Expect = 3e-06
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNS 87
L LL L KR L++G+ GY T MA + G+ + ++
Sbjct: 45 HDVAANQGQFLALL-VRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQV 103
Query: 88 SVKNVEKS 95
+ +N++ +
Sbjct: 104 ARENLQLA 111
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 43.0 bits (102), Expect = 3e-06
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNS 87
+ A L LL L K+ +D+G+ +GY M L + + G + D
Sbjct: 46 MQTAPEQAQLLALL-VKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTAL 104
Query: 88 SVKNVEKS 95
+ + EK+
Sbjct: 105 AKEYWEKA 112
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 42.6 bits (101), Expect = 4e-06
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNS 87
+ A L LL L K+ L++G GY MAL + G+ + D P+
Sbjct: 54 MQISPEQAQFLGLL-ISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAI 112
Query: 88 SVKNVEKS 95
+ K +K+
Sbjct: 113 AKKYWQKA 120
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 42.8 bits (101), Expect = 4e-06
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
L+ G LDVG+G+G+ ++ M+GE GK ID ++VN + + V K
Sbjct: 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK 84
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 42.6 bits (101), Expect = 4e-06
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 31 PHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVK 90
L LL ++ + + G G G + A + + V ID D V + +
Sbjct: 41 DRQTGRLLYLL-ARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARR 99
Query: 91 NVEKS 95
+ +
Sbjct: 100 MLHDN 104
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 42.7 bits (101), Expect = 4e-06
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNS 87
+ L +L + KR +++G+ +GY + C A + E GK + D + N
Sbjct: 42 MQISPEEGQFLNIL-TKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNV 100
Query: 88 SVKNVEKS 95
+ K +++
Sbjct: 101 ARKYWKEN 108
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 41.9 bits (98), Expect = 8e-06
Identities = 10/57 (17%), Positives = 13/57 (22%), Gaps = 5/57 (8%)
Query: 24 YKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV-GID 79
+ +S P L L R L+ G G G D
Sbjct: 25 WARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFG----PQAARWAAYD 77
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 41.8 bits (98), Expect = 8e-06
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGID 79
+ + ++++ LDVG G GY T ++ G KAVG+D
Sbjct: 38 GSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLS----RTGYKAVGVD 82
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 41.6 bits (97), Expect = 1e-05
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 5/53 (9%)
Query: 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGID 79
+ L +D G+G T ++ + + +G+D
Sbjct: 37 ANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLS----QFFPRVIGLD 85
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure
initiative; 1.75A {Thermoplasma acidophilum} SCOP:
c.66.1.32
Length = 200
Score = 40.8 bits (95), Expect = 2e-05
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
+E+ + G+ +D G+G+G L C + ++G D PD + ++ +N
Sbjct: 42 IEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLG-AESVTAFDIDPDAIETAKRNCGG 96
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 40.8 bits (95), Expect = 2e-05
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 27 TISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVN 86
I + ++ + L G L+VG GSG +++ + + G ++ D +
Sbjct: 92 QIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLK 149
Query: 87 SSVKNVE 93
++ N+
Sbjct: 150 KAMDNLS 156
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 40.4 bits (94), Expect = 3e-05
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 31 PHMHAHALELLREHLEN-GKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
P + +++ E+ + K +DVG G G T MA + + +G D
Sbjct: 19 PSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSD 68
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 40.0 bits (94), Expect = 3e-05
Identities = 4/52 (7%), Positives = 17/52 (32%)
Query: 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95
+ A+ + +G + + + ++ ID + + ++
Sbjct: 53 NGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA 104
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 39.9 bits (93), Expect = 3e-05
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95
G + L+ G G G T +A + ID P+ + + +N EK+
Sbjct: 34 VYPPGAKVLEAGCGIGAQTVILA-KNNPDAEITSIDISPESLEKARENTEKN 84
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 38.7 bits (90), Expect = 9e-05
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 39 ELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV-GID 79
LL ++++ + LD+ G G + + ++G V G+D
Sbjct: 30 PLLMKYMKKRGKVLDLACGVGGFSFLLE----DYGFEVVGVD 67
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 38.5 bits (89), Expect = 1e-04
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
++ G R L +G SG + M+ ++G G+ G++ P ++ + V
Sbjct: 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR 126
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 38.6 bits (89), Expect = 1e-04
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 17 DAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV 76
D S+ + P A + G R L+ G+GSG LT + +G G+ +
Sbjct: 71 DYVMSMPRGPQVIYPKDAAQIVHEGDIF--PGARVLEAGAGSGALTLSLLRAVGPAGQVI 128
Query: 77 GIDHIPDLVNSSVKNVEKSHKALLD 101
+ D + +NV + D
Sbjct: 129 SYEQRADHAEHARRNVSGCYGQPPD 153
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 38.7 bits (90), Expect = 1e-04
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95
L + + +R LD+G G G + L E +++G+D D++
Sbjct: 30 ARLRRYIPYFKGCRRVLDIGCGRGEF---LELCKEEGIESIGVDINEDMIKFCEGKFNVV 86
Query: 96 HKALLD 101
++
Sbjct: 87 KSDAIE 92
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 38.6 bits (90), Expect = 1e-04
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 32 HMHAHALELLREHLE--NGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
H H H+L L+ + E R LD+G+G+G+ + + E +G+D
Sbjct: 4 HHHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQE---CIGVD 50
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 38.6 bits (89), Expect = 1e-04
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 17 DAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTT-CMALMMGEHGKA 75
D+P ++ E G+RA+ +G G LT ++ + G +
Sbjct: 92 DSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRV 149
Query: 76 VGIDHIPDLVNSSVKNVEK 94
++ PD+ S K +E
Sbjct: 150 NVVEIEPDIAELSRKVIEG 168
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 38.0 bits (88), Expect = 2e-04
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 17 DAPQSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHG 73
K I P + L L KR L+ G+GSG L ++ + GE
Sbjct: 63 IILLGFERKTQIIYPKDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEVAGEVW 117
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 37.9 bits (88), Expect = 2e-04
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 30 APHMHAHALELL-REHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
A +LL + LE D+G G G T + G GID
Sbjct: 15 EDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGV-NVITGID 64
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related
protein; ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 37.1 bits (86), Expect = 3e-04
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 34 HAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGID 79
H L E+L+N R LD+G G+G +L + E G + V +D
Sbjct: 41 HRLIGSFLEEYLKNPCRVLDLGGGTGKW----SLFLQERGFEVVLVD 83
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis}
PDB: 3jwj_A
Length = 217
Score = 36.8 bits (85), Expect = 4e-04
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 30 APHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
+ L++ N +R +D+G G G L + + G+D
Sbjct: 14 NQQRMNGVVAALKQS--NARRVIDLGCGQGNLLKILL-KDSFFEQITGVD 60
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 37.1 bits (85), Expect = 4e-04
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 34 HAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
+AL+ +RE + +D G GSG L + +G+D
Sbjct: 710 VEYALKHIRES--SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVD 753
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure
initiative, PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 36.6 bits (85), Expect = 5e-04
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV-GIDHIPDLVN 86
+ +A LL+ + K LD+G SG L + E+G V GI+ P+
Sbjct: 17 YYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIK----ENGTRVSGIEAFPEAAE 68
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 36.5 bits (85), Expect = 6e-04
Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 31 PHMHAHALELLRE--HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSS 88
P + L+L+++ + N K L++G+ GY + A + + I+ ++ +
Sbjct: 53 PIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQYA 111
Query: 89 VKNVEKS 95
+N+
Sbjct: 112 KQNLATY 118
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAM; 1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 36.4 bits (84), Expect = 7e-04
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLV 85
+ L L G + L++G G+GY M G D P+L
Sbjct: 28 QPRSATLTKFLGELPAGAKILELGCGAGYQAEAML----AAGFDVDATDGSPELA 78
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1;
HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 36.0 bits (83), Expect = 7e-04
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 23 GYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
G K I P ++ L+ E K LD G+G + + G K GI+
Sbjct: 1 GMKTIIRQPQLY-RFLKYCNE-SNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIE 53
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 36.3 bits (84), Expect = 7e-04
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 27 TISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
T ++ A L+ L G+ L+VG+G+GY + + + VG++
Sbjct: 16 TPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRLP-----YPQKVGVE 63
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase,
BFR250, NESG, structural genomics, PSI-2; HET: SAM;
1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
3t7s_A* 3t7r_A* 3t7t_A*
Length = 267
Score = 36.4 bits (84), Expect = 8e-04
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
AL + +L D+G G+G T +A + G+ G+D + ++ +N +
Sbjct: 36 KALSFID-NLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQ 91
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 35.9 bits (83), Expect = 0.001
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 30 APHMHAHALELLRE-HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLV 85
+ + +LL+ + + G+ LD+G G+G LT + + +G D+ ++
Sbjct: 39 HSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLT---EKIAQSGAEVLGTDNAATMI 92
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 35.6 bits (82), Expect = 0.001
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
+ + L E L++ +D G+G T +A G K D + + + +
Sbjct: 12 SHDFLAEVLDDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQALGKTSQRLSDLG 68
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 35.9 bits (83), Expect = 0.001
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 29 SAPHMHAHALELLREHLEN--GKRALDVGSGSGYLTTCMALMMGEHG-KAVGID 79
+ + + + +R LD+G G G+L + + G +AVG+D
Sbjct: 32 AIESRRQVTDQAILLAILGRQPERVLDLGCGEGWL----LRALADRGIEAVGVD 81
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus}
SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 35.8 bits (83), Expect = 0.001
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
L + A+DVG G+G +T +A + ID P+ ++++ N+++
Sbjct: 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQR 77
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 35.5 bits (82), Expect = 0.001
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 24 YKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIP 82
++ +A + L+ G + LD G G G + ++ + G +G D P
Sbjct: 23 WRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLS----KQGHDVLGTDLDP 78
Query: 83 DLV 85
L+
Sbjct: 79 ILI 81
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 35.7 bits (83), Expect = 0.001
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 31 PHMHAHALELLRE--HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSS 88
P M +E L + R L++G+ GY MA + E V I+ +
Sbjct: 36 PIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPE-ATIVSIERDERRYEEA 94
Query: 89 VKNVEKS 95
K+V+
Sbjct: 95 HKHVKAL 101
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 35.5 bits (82), Expect = 0.001
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 1 MNQVDRGNFCSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLE-NGKRALDVGSGSG 59
M++ + +D T+ AP ++ E + +D+GSG G
Sbjct: 2 MSENKKKFDKKGAKNMDEISK-----TLFAP-IYPIIAENIINRFGITAGTCIDIGSGPG 55
Query: 60 YLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
L+ +A +D + ++KN+
Sbjct: 56 ALSIALAKQSD--FSIRALDFSKHMNEIALKNIAD 88
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 35.7 bits (82), Expect = 0.001
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 25 KVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDL 84
K I+ + A L LR L++ D+G+GS + + A + +G+ ++ P
Sbjct: 20 KKLITKQEVRAVTLSKLR--LQDDLVMWDIGAGSASV-SIEASNLMPNGRIFALERNPQY 76
Query: 85 VNSSVKNVEK 94
+ N++K
Sbjct: 77 LGFIRDNLKK 86
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 35.4 bits (82), Expect = 0.001
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 4/56 (7%)
Query: 39 ELLRE-HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93
E L +D G G+G+ + K ID + + +
Sbjct: 8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLL---EFATKLYCIDINVIALKEVKEKFD 60
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 35.3 bits (81), Expect = 0.001
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 30 APHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
+ +L+ N K+ +D+G G G L + + + G+D
Sbjct: 14 NQQRLGTVVAVLKSV--NAKKVIDLGCGEGNLLSLLLKDKSFE-QITGVD 60
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 35.2 bits (81), Expect = 0.002
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
A+ + L + + D+G G+G T +A + G+ GID PD + +N K
Sbjct: 36 KAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVK 91
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 35.3 bits (81), Expect = 0.002
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 27 TISAPHMHAHALELLREHLE--NGKRALDVGSGSGYLTTCMALMMGEHGKAV-GID 79
P+M + A L L++ SG+GY T ++ V +D
Sbjct: 24 ATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLS----GLADRVTALD 75
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 34.7 bits (80), Expect = 0.002
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
AL + + + D+G GSG + L AV + + + N
Sbjct: 15 ALAISALAPKPHETLWDIGGGSGSI-AIEWLRSTPQTTAVCFEISEERRERILSNAIN 71
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET:
SAH; 1.30A {Homo sapiens}
Length = 215
Score = 35.0 bits (80), Expect = 0.002
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 39 ELLREHLENGKRALDVGSGSGYLTTCMALMMGEHG--KAVGIDHIPDLVN 86
LL L R L +G G+ L+ + G +D+ +V
Sbjct: 34 ALLEPELRPEDRILVLGCGNSALSYELF----LGGFPNVTSVDYSSVVVA 79
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 34.9 bits (80), Expect = 0.002
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 30 APHMHAHALELLREHLEN------GKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
H A ++ L++G G+G + ++ + + +D
Sbjct: 16 RAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIA---LPLIARGYRYIALD 68
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 35.1 bits (81), Expect = 0.002
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 5/43 (11%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGID 79
+L+R LDV G+G + G++
Sbjct: 31 ADLVRSRTPEASSLLDVACGTGTHLEHFT----KEFGDTAGLE 69
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 34.9 bits (80), Expect = 0.002
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV-GIDHIPDLVNSSVKNVEKS 95
A E L++ +G G LT + G V ++ ++ + K + ++
Sbjct: 72 AREFATRTGPVSGPVLELAAGMGRLTFPFL----DLGWEVTALELSTSVLAAFRKRLAEA 127
Query: 96 HKALLDSGRVL 106
+ D ++
Sbjct: 128 PADVRDRCTLV 138
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.002
Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 22 IGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHI 81
IG + + P+ + +L + LEN + G + M + + V D++
Sbjct: 306 IGVRCYEAYPNT-SLPPSILEDSLENNE-------GV---PSPMLSISNLTQEQV-QDYV 353
Query: 82 PDLVNSSVKNVEKSHKALLDSGRVLLVS 109
+ NS + ++ +L++ + L+VS
Sbjct: 354 -NKTNSHLPAGKQVEISLVNGAKNLVVS 380
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics,
transferase; HET: SAH; 2.20A {Pyrococcus horikoshii}
SCOP: c.66.1.32
Length = 207
Score = 34.7 bits (79), Expect = 0.002
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 31 PHMHAHALELLREHLE-NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSV 89
+ + L L + GK D+G+G+G L + AL++G + + ++ + V+ +
Sbjct: 32 GNAASELLWLAYSLGDIEGKVVADLGAGTGVL-SYGALLLG-AKEVICVEVDKEAVDVLI 89
Query: 90 KNVEK 94
+N+ +
Sbjct: 90 ENLGE 94
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G
joint center for structural genomics, JCSG; HET: MSE;
1.90A {Exiguobacterium sibiricum 255-15}
Length = 243
Score = 34.7 bits (80), Expect = 0.003
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 34 HAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
+ + + E +E GKR D+G G+G T +A +H + G+D
Sbjct: 20 YPEWVAWVLEQVEPGKRIADIGCGTGTATLLLA----DHYEVTGVD 61
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 34.8 bits (80), Expect = 0.003
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGID 79
L+R H LDV G+G + + G++
Sbjct: 41 AALVRRHSPKAASLLDVACGTGMH----LRHLADSFGTVEGLE 79
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 34.6 bits (80), Expect = 0.003
Identities = 8/47 (17%), Positives = 21/47 (44%)
Query: 49 KRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95
L++G+ GY MA ++ + + ++ PD + + + +
Sbjct: 60 SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA 106
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 34.4 bits (79), Expect = 0.003
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 33 MHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV-GIDHIPDLVN 86
MH + G L++GS G T+ + EH + ++ + ++
Sbjct: 29 MHPFMVRAFTPFFRPG-NLLELGSFKGDFTSRLQ----EHFNDITCVEASEEAIS 78
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 34.3 bits (79), Expect = 0.003
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV-GID 79
+E E+ LD+ G+G LT + K +D
Sbjct: 28 IEKCVENNLVFDDYLDLACGTGNLTENLC----PKFKNTWAVD 66
>3lpm_A Putative methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium, nysgxrc; 2.40A {Listeria
monocytogenes}
Length = 259
Score = 34.0 bits (78), Expect = 0.004
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 47 NGKRALDVGSGSGYLTTCMALMMGEHGKA--VGIDHIPDLVNSSVKNVEKSH 96
+ +D+ SG+G + L++ KA VG++ L + + ++V +
Sbjct: 49 RKGKIIDLCSGNG----IIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQ 96
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 33.7 bits (78), Expect = 0.005
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
A ++ L L +DVG GSG +T +A ID++ + + +N+ K
Sbjct: 25 AVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAKR---CKFVYAIDYLDGAIEVTKQNLAK 79
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 34.0 bits (78), Expect = 0.005
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 34 HAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
++ +L+ LD+G GSG ++ + + GID
Sbjct: 17 SLDLYPIIHNYLQEDDEILDIGCGSGKIS---LELASKGYSVTGID 59
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 33.6 bits (77), Expect = 0.005
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91
++ L K LD+G+ +G + + + V D + S
Sbjct: 14 MDALEREGLEMKIVLDLGTSTG----VITEQLRKRNTVVSTDLNIRALESHRGG 63
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 33.7 bits (77), Expect = 0.005
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 25 KVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDL 84
I+ M A L L G+ D+G GSG ++ L G+A+ I+ D
Sbjct: 35 DGQITKSPMRALTLAALA--PRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADR 89
Query: 85 VNSSVKNVEK 94
+ + KN++
Sbjct: 90 IENIQKNIDT 99
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii,
structural genomics, BSGC structure funded by NIH;
1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 33.4 bits (77), Expect = 0.007
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 39 ELLREHLEN--GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
++L E++ LD+G G G + +A E D + + +N++
Sbjct: 42 KILVENVVVDKDDDILDLGCGYGVIGIALAD---EVKSTTMADINRRAIKLAKENIKL 96
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent
methyltransferase; NP_104914.1; HET: MSE; 1.60A
{Mesorhizobium loti}
Length = 243
Score = 33.2 bits (76), Expect = 0.008
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 35 AHALELLREHLEN--GKRALDVGSGSGYLTTCMALMMGEHGKA--VGID 79
A LR L G R +D+G G G+ EHG + +G+D
Sbjct: 29 AAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAH----EHGASYVLGLD 73
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics,
PSI-2, protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 32.9 bits (75), Expect = 0.010
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 35 AHALELLREHL-ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
AH ++L + + ++ L+ G G+G LT ++ GI+
Sbjct: 32 AHYEDILEDVVNKSFGNVLEFGVGTGNLT---NKLLLAGRTVYGIE 74
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 33.1 bits (75), Expect = 0.010
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGID 79
L LLR+H R LDV G+G ++M+ E G +D
Sbjct: 50 LGLLRQH--GCHRVLDVACGTGVD----SIMLVEEGFSVTSVD 86
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 33.0 bits (74), Expect = 0.012
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 32 HMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLVNSSVK 90
++ L + D+G G T + + K +GID+ +V +
Sbjct: 43 NIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQ 102
Query: 91 NVEKSHK 97
++ H
Sbjct: 103 HIAAYHS 109
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 32.8 bits (75), Expect = 0.013
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGID 79
A +LR ++ G R LD+GSGSG + A +HG GID
Sbjct: 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWA---RDHGITGTGID 66
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 32.6 bits (74), Expect = 0.014
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 29 SAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV-GIDHIPDLV 85
+ + LL +L G D+G+G+G + +A G V ++ +
Sbjct: 18 PDIRIVNAIINLL--NLPKGSVIADIGAGTGGYSVALA----NQGLFVYAVEPSIVMR 69
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 32.5 bits (74), Expect = 0.015
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 34 HAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV-GID 79
H L L L++G +G T +A H K + ID
Sbjct: 39 HTQLLRLSLS-SGAVSNGLEIGCAAGAFTEKLA----PHCKRLTVID 80
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 32.2 bits (73), Expect = 0.018
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 45 LENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLD 101
+ R D+G+G+G +A + E + + ++ + +++E A
Sbjct: 34 DDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFS 89
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 32.2 bits (73), Expect = 0.021
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 39 ELLREHLEN--GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSH 96
+HL +D+G G+G + + K V +D P V SS NVE +
Sbjct: 212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNM 270
Query: 97 KALLDSGRVL 106
LD +
Sbjct: 271 PEALDRCEFM 280
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 31.7 bits (72), Expect = 0.023
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 29 SAPHMHAHALELLREHLEN-GKRALDVGSGSGYLTTCMALMMGEHG-KAVGID 79
+ L+ LDVGSG+G T +A G + G++
Sbjct: 22 TVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLA----SLGHQIEGLE 70
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 32.1 bits (73), Expect = 0.024
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 29 SAPHMHAHALELLRE--HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
S H L L + L+ + LDV +G G++ A + + V D
Sbjct: 17 SQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKK---VVAFD 66
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 32.1 bits (73), Expect = 0.026
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 23 GYKVTISAPHMHAHALELLRE-HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHI 81
K + A LLR G R LD +GSG + A +G D
Sbjct: 178 FPKAALRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLD 237
Query: 82 PDLVNSSVKNVEKS 95
+ + + S
Sbjct: 238 EKRLGLAREAALAS 251
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima}
SCOP: c.66.1.41
Length = 219
Score = 31.3 bits (71), Expect = 0.040
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 38 LELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
L+ ++ L G R +++G G+G + +G++
Sbjct: 39 LQAVKCLLPEG-RGVEIGVGTGRFAVPLK-------IKIGVE 72
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1;
structural genomics, riken structural
genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex
aeolicus} PDB: 3axt_A*
Length = 392
Score = 31.4 bits (70), Expect = 0.044
Identities = 13/57 (22%), Positives = 18/57 (31%)
Query: 37 ALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVE 93
LE L + L + D S SG L KA D + +N +
Sbjct: 42 GLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFK 98
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 31.0 bits (70), Expect = 0.047
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 33 MHAHALELLREHLEN--GKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
A L++ L + K LD+G G G+ C+ K +GID
Sbjct: 28 KAAGEWHELKKMLPDFNQKTVLDLGCGFGWH--CIYAAEHGAKKVLGID 74
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 30.9 bits (71), Expect = 0.052
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKA--VGIDHIPDLVNSSVKNVE 93
ALEL+R++ K D+G+GSG + + + + A D V + KN E
Sbjct: 114 LALELIRKY--GIKTVADIGTGSG----AIGVSVAKFSDAIVFATDVSSKAVEIARKNAE 167
Query: 94 K 94
+
Sbjct: 168 R 168
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 31.0 bits (70), Expect = 0.059
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 38 LELLREH-LENGKRALDVGSGSGYLTTCMALMMGEHGKAV-GID 79
E+ +E +R LD+ G+G T +A E G V G+D
Sbjct: 31 EEIFKEDAKREVRRVLDLACGTGIPTLELA----ERGYEVVGLD 70
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 30.7 bits (69), Expect = 0.066
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 32 HMHAHALELLREHL-ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID 79
+ + LRE L + LD+G G GY T A + E G+D
Sbjct: 69 PLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEI-TTFGLD 116
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 30.0 bits (68), Expect = 0.11
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 30 APHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHI 81
P + A++++R HL G V + + ++T +A +A G+ H+
Sbjct: 90 RPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIA-------RAFGVQHL 134
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 30.1 bits (68), Expect = 0.11
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 26 VTISAPHMHA--HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPD 83
P + LD+G+G+G L+ + E +D
Sbjct: 21 RRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEK 79
Query: 84 LVN 86
++
Sbjct: 80 MLE 82
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 30.1 bits (67), Expect = 0.11
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 40 LLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHK 97
L+R + + G LD+G G G + G+ G+D +N + +
Sbjct: 57 LIRLYTKRGDSVLDLGCGKGG--DLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR 112
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 29.8 bits (67), Expect = 0.13
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 34 HAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV-GIDHIP 82
H+ LE + + + LD+G G+G +L + +G V D
Sbjct: 21 HSEVLEAV--KVVKPGKTLDLGCGNGRN----SLYLAANGYDVDAWDKNA 64
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 29.8 bits (67), Expect = 0.13
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 12 HNPYLDAPQSIGYKVTISAPHMHAHALELLRE-HLENGKRALDVGSGSGYLTTCMALMMG 70
H P S A EL L+ + LD+G+G G ++
Sbjct: 46 HVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYG---GAARFLVR 102
Query: 71 EHG-KAVGID 79
+ G ++
Sbjct: 103 KFGVSIDCLN 112
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 29.9 bits (67), Expect = 0.14
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
E L G++ LD+G+G G LT +A M + VG++ V S K +E
Sbjct: 222 ALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEA 277
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 29.2 bits (65), Expect = 0.18
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 9/48 (18%)
Query: 40 LLREHLENGK----RALDVGSGSGYLTTCMALMMGEHGKAV-GIDHIP 82
L+ ++ RAL G G G+ + M + V G+D
Sbjct: 55 LIVHLVDTSSLPLGRALVPGCGGGHD----VVAMASPERFVVGLDISE 98
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 29.4 bits (66), Expect = 0.19
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 32 HMHAHALELLRE-HLENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGID 79
E++ + +G R LDVG G G +A + GI
Sbjct: 45 ATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLA---TARDVRVTGIS 91
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine
biosynthesis, transsulfurat lyase; HET: PLP; 2.30A
{Arabidopsis thaliana} SCOP: c.67.1.3
Length = 464
Score = 28.8 bits (65), Expect = 0.30
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALM-MGEH 72
ALE L L+ RA SG L+ L+ GE
Sbjct: 136 DALESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEE 173
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase
fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A
{Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A*
2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 28.5 bits (63), Expect = 0.41
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 1 MNQVDRGNFCSHNPYLDAPQSIGYKVTISAPHMHAHALELLREHLE------NGKRALDV 54
M R F H Y+++ + + M + L + + + L +
Sbjct: 1 MASSMRSLFSDHGKYVESFRRF-LNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSI 59
Query: 55 GSGSGYLTTCMALMMGEHGKAVGID 79
G G+G + + + V I+
Sbjct: 60 GGGAGEIDLQILSKVQAQYPGVCIN 84
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 28.3 bits (64), Expect = 0.42
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMAL 67
A+ L+ +G R +DVG+GSG C+A+
Sbjct: 20 EAIRFLKRM-PSGTRVIDVGTGSG----CIAV 46
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 28.1 bits (63), Expect = 0.47
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 39 ELLREHLEN--GKRALDVGSGSGYLTTCMAL 67
+LL L + LDVG G+G L+ A
Sbjct: 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFAR 216
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 27.9 bits (63), Expect = 0.51
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 39 ELL--REHLENGKRALDVGSGSGYLTTCMALMM 69
+ + L G+ AL++G+G M +M
Sbjct: 45 RYIFLKTFLRGGEVALEIGTGHT----AMMALM 73
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 28.2 bits (63), Expect = 0.54
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 32 HMHAHALELLRE-----HLENGKRALDVGSGSGYLTTCMALMMGEHG-KAVGIDHIPDLV 85
++ + LE ++ L + LD+GSG G + ++G GID ++V
Sbjct: 35 YISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYIN---EKYGAHTHGIDICSNIV 91
Query: 86 NSSVKNVEKSHK 97
N + + V ++K
Sbjct: 92 NMANERVSGNNK 103
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB:
3epp_A*
Length = 313
Score = 28.0 bits (61), Expect = 0.56
Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 2/62 (3%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95
LE +R+ + LD+G G G V D V + E
Sbjct: 23 EFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINK--LVCTDIADVSVKQCQQRYEDM 80
Query: 96 HK 97
Sbjct: 81 KN 82
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET:
PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Length = 393
Score = 27.9 bits (63), Expect = 0.62
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALM-MGEH 72
LE LEN + L SGS T + + G H
Sbjct: 58 ENLERAVAALENAQYGLAFSSGSATTATILQSLPQGSH 95
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC,
inhibitor, structural genom stockholm, structural
genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB:
2nmp_A* 3elp_B
Length = 403
Score = 27.9 bits (63), Expect = 0.64
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHI 81
+ LE L+ K L SG T L+ + G D I
Sbjct: 70 NCLEKAVAALDGAKYCLAFASGLAATVTITHLL--KAG-----DQI 108
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 28.0 bits (63), Expect = 0.69
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGI 78
+L L +GK+ + YL +A ++ + G V I
Sbjct: 511 GPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSI 553
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism
PLP-dependent enzyme family, CYST gamma lyase,
pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae
PV} PDB: 3e6g_A* 3nnp_A*
Length = 400
Score = 27.5 bits (62), Expect = 0.76
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHI 81
A E LE G RA SG +T M L+ + G H+
Sbjct: 70 FAYERCVAALEGGTRAFAFASGMAATSTVMELL--DAG-----SHV 108
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 27.7 bits (62), Expect = 0.80
Identities = 10/59 (16%), Positives = 23/59 (38%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
+++ + GKR + + + + ++ +A + G V I L N +E
Sbjct: 516 TPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEY 574
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 27.3 bits (60), Expect = 0.84
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 28 ISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLV 85
+ + + RALD G+G G +T + + ++ + ++
Sbjct: 74 VHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYAT--TDLLEPVKHML 129
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 27.3 bits (60), Expect = 0.94
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGID-HIPDLVNSSVKNVEKSHKALLD 101
+ LDVG+G G +A V +D + S K K K L
Sbjct: 26 QYDDVVLDVGTGDGKHPYKVARQNPSRL-VVALDADKSRMEKISAKAAAKPAKGGLP 81
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET:
SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A*
3pb3_A* 3mte_A*
Length = 225
Score = 27.5 bits (60), Expect = 0.97
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 46 ENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKS 95
+ + +D+G+G G +A+ +GID + + + K + K
Sbjct: 23 QFDRVHIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKK 71
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 27.3 bits (60), Expect = 0.99
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP 82
H++ G + L +G+ SG + ++ ++G G ++
Sbjct: 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSH 112
>2kw5_A SLR1183 protein; structural genomics, northeast structural
genomics consortium (NESG), PSI-2, protein structure
initiative, unknown function; NMR {Synechocystis} PDB:
3mer_A
Length = 202
Score = 26.8 bits (59), Expect = 1.4
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 7/44 (15%)
Query: 39 ELLREHLEN--GKRALDVGSGSGYLTTCMALMMGEHGKAV-GID 79
+ L + L + G G +A G V +D
Sbjct: 19 DFLVSVANQIPQGKILCLAEGEGRNACFLA----SLGYEVTAVD 58
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent
enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A
{Escherichia coli} SCOP: c.67.1.3
Length = 386
Score = 26.7 bits (60), Expect = 1.7
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHI 81
++ LE G A+ +G + + + + G D +
Sbjct: 55 DVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-KPG-----DLL 94
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 26.7 bits (60), Expect = 1.8
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMAL 67
AL L E R LD+G+G+G +AL
Sbjct: 101 QALARLPE---QPCRILDLGTGTG----AIAL 125
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 26.6 bits (58), Expect = 2.1
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 43 EHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIP 82
E L NG A+D+G+ G T ++ + +D+ P
Sbjct: 207 ERLANGMWAVDLGACPGGWTYQ---LVKRNMWVYSVDNGP 243
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 26.3 bits (57), Expect = 2.6
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSG 103
H GK LDVG+GSG L A AV + D + VK H + G
Sbjct: 60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEG 119
Query: 104 RV 105
V
Sbjct: 120 SV 121
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 25.8 bits (57), Expect = 2.7
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 53 DVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVN 86
G G YL +A + + + I ++P+L
Sbjct: 62 SFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping;
HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP:
c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A*
2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A*
1g38_A*
Length = 421
Score = 26.1 bits (57), Expect = 3.1
Identities = 8/45 (17%), Positives = 14/45 (31%)
Query: 47 NGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKN 91
G R L+ G G + VG++ P ++
Sbjct: 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWA 83
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 25.8 bits (56), Expect = 3.2
Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPD 83
++ + L +G+ +G + +A + + G I++ P
Sbjct: 71 PIKRDSKILYLGASAGTTPSHVA-DIADKGIVYAIEYAPR 109
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 3.8
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 88 SVKNVEKSHKALL---DSGRVLLVS 109
++K ++ S K L DS L +
Sbjct: 21 ALKKLQASLK--LYADDSAPALAIK 43
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 25.4 bits (56), Expect = 4.1
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 39 ELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
L +R +DV + G TT ++ M G + + V N+ +
Sbjct: 109 AALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISR 164
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 25.4 bits (55), Expect = 4.3
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 44 HLENGKRALDVGSGSGYLTTCMALMMG 70
H+ K LDVG G+G L + A G
Sbjct: 61 HIFKDKVVLDVGCGTGIL-SMFAAKAG 86
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A
{Mycobacterium ulcerans} PDB: 3qi6_A*
Length = 392
Score = 25.6 bits (57), Expect = 4.3
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMM--GEH 72
ALE +E+ SG + M+ G+H
Sbjct: 69 TALEAALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDH 107
>1kcg_C ULBP3 protein; protein-protein complex, C-type lectin-like
receptor, MHC class I-like molecule, immune system; HET:
GSH; 2.60A {Homo sapiens} SCOP: d.19.1.1
Length = 178
Score = 25.2 bits (56), Expect = 4.6
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 38 LELLREHLENGKRALD 53
LR+ L + K+ L+
Sbjct: 163 KSWLRDFLMHRKKRLE 178
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia
pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 25.4 bits (55), Expect = 5.2
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 46 ENGKRALDVGSGSGY-LTTCMALMMGEHGKAVGI 78
KR L +G+ +GY L + G +G+
Sbjct: 45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGV 78
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 25.2 bits (55), Expect = 5.4
Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 34 HAHALELLREHLENGKRALDVGSGSG 59
++ L + +D G G G
Sbjct: 105 AEFLMDHLGQ-AGPDDTLVDAGCGRG 129
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 24.9 bits (54), Expect = 5.7
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 31 PHMHAHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAV-GIDHIPD 83
H + + + + LD+G G G +L + G V DH +
Sbjct: 104 NTTAIHGDVVDAAKIISPCKVLDLGCGQGRN----SLYLSLLGYDVTSWDHNEN 153
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle,
cell juncti cytoplasmic vesicle, membrane,
phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus}
PDB: 3hd9_B 3ipd_B
Length = 109
Score = 24.3 bits (53), Expect = 6.4
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 65 MALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99
MA+++ G+ ID I V +V VE++
Sbjct: 40 MAMLVESQGEM--IDRIEYNVEHAVDYVERAVSDT 72
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 25.0 bits (54), Expect = 6.7
Identities = 19/62 (30%), Positives = 24/62 (38%)
Query: 44 HLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKALLDSG 103
HL K LDVGSG+G L A + I D VK + H + G
Sbjct: 63 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKG 122
Query: 104 RV 105
+V
Sbjct: 123 KV 124
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein
STR initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Length = 291
Score = 24.9 bits (55), Expect = 6.9
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 35 AHALELLREHLENGKRALDVGSGSGYLTTCM 65
AL + +E +D+G+ +G T M
Sbjct: 74 EKALAVFNLSVE-DMITIDIGASTGGFTDVM 103
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 25.0 bits (53), Expect = 6.9
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 35 AHALELLREHLENGKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
AL+ L +G G G + ++ E + + + VEK
Sbjct: 397 VGALKDLGADGRKTVVIYLLGGGRGPI--GTKILKSEREYNNTFRQGQESLKVKLYIVEK 454
Query: 95 S 95
+
Sbjct: 455 N 455
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 25.0 bits (54), Expect = 7.0
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 16/67 (23%)
Query: 48 GKRALDVGSGSGYLT----------------TCMALMMGEHGKAVGIDHIPDLVNSSVKN 91
K LDVG GSG L+ + MA K+ + ++ V+
Sbjct: 51 DKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE 110
Query: 92 VEKSHKA 98
V +
Sbjct: 111 VSLPEQV 117
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis,
pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A
{Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A*
1i43_A*
Length = 445
Score = 24.9 bits (55), Expect = 7.0
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 8/47 (17%)
Query: 36 HALELLREHLENGKRALDVGSGSG-YLTTCMALMMGEHGKAVGIDHI 81
LE LE + L + SG +AL+ G HI
Sbjct: 117 VVLEEKISALEGAESTLLMASGMCASTVMLLALV--PAG-----GHI 156
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 25.0 bits (55), Expect = 7.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 48 GKRALDVGSGSGYLTTCMALMMGEHGKAVGIDHIPDLVNSSVKNVEK 94
G+R LD+ + G TT +A MG G + + V ++NVE+
Sbjct: 102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER 148
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba
histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A*
3aeo_A* 3aep_A*
Length = 389
Score = 24.8 bits (55), Expect = 7.5
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 36 HALELLREHLENGKRALDVGSGSG-YLTTCMALMMGEHGKAVGIDHI 81
E + +E + GSG G ++ +A + + G DH+
Sbjct: 62 EQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFL--QKG-----DHL 101
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25,
SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A
{Saccharomyces cerevisiae} SCOP: h.1.15.1
Length = 69
Score = 23.8 bits (52), Expect = 7.6
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 65 MALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99
M ++ E + +D I V + +VE+
Sbjct: 29 MEELVIEQQEN--VDVIDKNVEDAQLDVEQGVGHT 61
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle,
transport protein; 1.45A {Rattus norvegicus} SCOP:
h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Length = 68
Score = 23.8 bits (52), Expect = 7.7
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 65 MALMMGEHGKAVGIDHIPDLVNSSVKNVEKSHKAL 99
MA+++ G+ ID I V +V VE++
Sbjct: 31 MAMLVESQGEM--IDRIEYNVEHAVDYVERAVSDT 63
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 24.5 bits (54), Expect = 7.9
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEH-G-KAVGI 78
AL+ L LE G LD+G G G +G+
Sbjct: 63 LALDKLN--LEPGMTLLDIGCGWGS----TMRHAVAEYDVNVIGL 101
>3m17_A IGG receptor FCRN large subunit P51; immunoglobulin binding
protein, cell membrane, disulfide BON glycoprotein,
IGG-binding protein, immunoglobulin domain; 2.60A {Homo
sapiens} PDB: 1exu_A 3m1b_A
Length = 267
Score = 24.5 bits (54), Expect = 8.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 38 LELLREHLENGKRAL 52
LREHLE G+ L
Sbjct: 160 PHRLREHLERGRGNL 174
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich
domain 2, protein-ADP COM transferase; HET: ADP; 2.30A
{Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Length = 337
Score = 24.6 bits (54), Expect = 8.5
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 13/99 (13%)
Query: 20 QSIGYKVTISAPHMHAHALELLREHLENGKRALDVGSGSGYLTTCM-ALMMGEHGKAVGI 78
+ GY+ + A A + L G G L + + + +G+
Sbjct: 52 EKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGV 111
Query: 79 -------D-----HIPDLVNSSVKNVEKSHKALLDSGRV 105
D HIP+ + ++ + + H +D G++
Sbjct: 112 IPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKM 150
>1mhc_A MHC class I antigen H2-M3; histocompatibility antigen/peptide,
histocompatibility antig peptide complex; HET: FME NAG;
2.10A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Length = 282
Score = 24.5 bits (54), Expect = 8.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 38 LELLREHLENGKRAL 52
LELL L NGK L
Sbjct: 165 LELLHRFLRNGKEIL 179
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 24.5 bits (54), Expect = 9.2
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 36 HALELLREHLENGKRALDVGSGSGYLTTCMALMMGEH-G-KAVGI 78
L+ L L+ G LD+G G G E +G+
Sbjct: 81 LNLDKLD--LKPGMTLLDIGCGWGT----TMRRAVERFDVNVIGL 119
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 24.6 bits (54), Expect = 9.2
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 9/30 (30%)
Query: 39 ELLREHLEN---------GKRALDVGSGSG 59
E+L H+ + G+R +DVG+G G
Sbjct: 48 EMLVRHILDSIVVAPYLQGERFIDVGTGPG 77
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Length = 232
Score = 24.5 bits (54), Expect = 10.0
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 35 AHALELLREHLENGKRALDVGSGSGYLTTCM 65
AL+ + GK LD+GS +G T M
Sbjct: 26 EKALKEFHLEIN-GKTCLDIGSSTGGFTDVM 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.390
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,718,025
Number of extensions: 98494
Number of successful extensions: 575
Number of sequences better than 10.0: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 209
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)