BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5587
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 43/55 (78%)
Query: 55 LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 109
LIDQL+PGGRLI+PVGP G Q LEQ DK DG+I PLM V+YVPLTDK+ QW
Sbjct: 168 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQW 222
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 38/49 (77%)
Query: 54 QLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPL 102
+LI+QL GGRLI+PVGP+G +Q ++Q DK+ +G + T LM V+YVPL
Sbjct: 179 ELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 227
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 35/46 (76%)
Query: 11 SKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLI 56
++LI+QL GGRLI+PVGP+G +Q ++Q DK+ +G + T LM ++
Sbjct: 178 TELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVM 223
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 55 LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 109
LI+QL+ GG+LIIPVG Q L ++ K DG + V +VPL ++ W
Sbjct: 175 LIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDGIKIKNH-GGVAFVPLIG-EYGW 227
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 13 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDG 45
LI+QL+ GG+LIIPVG Q L ++ K DG
Sbjct: 175 LIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDG 207
>pdb|1YX7|A Chain A, Nmr Structure Of Calsensin, Energy Minimized Average
Structure.
pdb|1YX8|A Chain A, Nmr Structure Of Calsensin, 20 Low Energy Structures
Length = 83
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 35 SLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPL 94
+ +++D N DG +T L + L L E SA+ ++ DKN DG I++
Sbjct: 12 AFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEF 71
Query: 95 MQV 97
+
Sbjct: 72 LNA 74
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 55 LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPL 102
L+D L G+LIIP+ E Q L +I K +G I + L V +V L
Sbjct: 179 LVDLLAENGKLIIPI-EEDYTQVLYEITKK-NGKIIKDRLFDVCFVSL 224
>pdb|4FX0|A Chain A, Crystal Structure Of M. Tuberculosis Transcriptional
Regulator Mosr
pdb|4FX0|B Chain B, Crystal Structure Of M. Tuberculosis Transcriptional
Regulator Mosr
Length = 148
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 47 ITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQ 106
+ RT L + ++ +R G + + G + + +E K PL + V +T
Sbjct: 64 VERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKAVPLWRGVQAEVTASV 123
Query: 107 HQWP---------GRSHEVCRF 119
WP G++ E CR
Sbjct: 124 GDWPRVRRDIANLGQAAEACRL 145
>pdb|4F9D|A Chain A, Structure Of Escherichia Coli Pgab 42-655 In Complex With
Nickel
pdb|4F9D|B Chain B, Structure Of Escherichia Coli Pgab 42-655 In Complex With
Nickel
Length = 618
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 76 QNLEQIDKNLDGTITRTPLMQVVYVPL 102
+NL+Q+D+N+D I R MQ+ V L
Sbjct: 290 ENLQQMDRNIDVLIQRVKDMQISTVYL 316
>pdb|4FX4|A Chain A, Crystal Structure Of M. Tuberculosis Transcriptional
Regulator Mosr (Rv1049) In Compex With Dna
pdb|4FX4|B Chain B, Crystal Structure Of M. Tuberculosis Transcriptional
Regulator Mosr (Rv1049) In Compex With Dna
Length = 148
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 47 ITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQ 106
+ RT L + ++ R G + + G + + +E K PL + V +T
Sbjct: 64 VERTTLTRNLEVXRRDGLVRVXAGADARCKRIELTAKGRAALQKAVPLWRGVQAEVTASV 123
Query: 107 HQWP---------GRSHEVCRF 119
WP G++ E CR
Sbjct: 124 GDWPRVRRDIANLGQAAEACRL 145
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 55 LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQ 106
LI QL+ GG+L++PVG Q L +K D I + V +VPL K+
Sbjct: 163 LIRQLKDGGKLLMPVGR--YLQRLVLAEKRGDEIIIKD-CGPVAFVPLVGKE 211
>pdb|3G7F|H Chain H, Crystal Structure Of Blastochloris Viridis Heterodimer
Mutant Reaction Center
pdb|3T6D|H Chain H, Crystal Structure Of The Reaction Centre From
Blastochloris Viridis Strain Dsm 133 (Atcc 19567)
Substrain-08
Length = 258
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 59 LRPGGR-LIIPVGPEGSAQNLEQIDKNLDGTITRTPL 94
L+P G L+ VGP A+ E +D +DG PL
Sbjct: 101 LQPTGNPLVDAVGPASYAERAEVVDATVDGKAKIVPL 137
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 17 LRPGGR-LIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLID 57
L+P G L+ VGP A+ E +D +DG PL D
Sbjct: 101 LQPTGNPLVDAVGPASYAERAEVVDATVDGKAKIVPLRVATD 142
>pdb|2PRC|H Chain H, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Ubiquinone-2 Complex)
pdb|3PRC|H Chain H, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Qb- Depleted)
pdb|5PRC|H Chain H, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Atrazine Complex)
pdb|6PRC|H Chain H, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg- 420314 (Triazine) Complex)
pdb|7PRC|H Chain H, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg- 420315 (Triazine) Complex)
pdb|1DXR|H Chain H, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis - His L168 Phe Mutant (Terbutryn Complex)
pdb|1R2C|H Chain H, Photosynthetic Reaction Center Blastochloris Viridis
(Atcc)
pdb|1VRN|H Chain H, Photosynthetic Reaction Center Blastochloris Viridis
(Atcc)
pdb|2I5N|H Chain H, 1.96 A X-Ray Structure Of Photosynthetic Reaction Center
From Rhodopseudomonas Viridis:crystals Grown By
Microfluidic Technique
pdb|2JBL|H Chain H, Photosynthetic Reaction Center From Blastochloris Viridis
pdb|3D38|H Chain H, Crystal Structure Of New Trigonal Form Of Photosynthetic
Reaction Center From Blastochloris Viridis. Crystals
Grown In Microfluidics By Detergent Capture.
pdb|1PRC|H Chain H, Crystallographic Refinement At 2.3 Angstroms Resolution
And Refined Model Of The Photosynthetic Reaction Center
From Rhodopseudomonas Viridis
pdb|2WJM|H Chain H, Lipidic Sponge Phase Crystal Structure Of The
Photosynthetic Reaction Centre From Blastochloris
Viridis (Low Dose)
pdb|2WJN|H Chain H, Lipidic Sponge Phase Crystal Structure Of Photosynthetic
Reaction Centre From Blastochloris Viridis (High Dose)
pdb|2X5U|H Chain H, 80 Microsecond Laue Diffraction Snapshot From Crystals Of
A Photosynthetic Reaction Centre Without Illumination.
pdb|2X5V|H Chain H, 80 Microsecond Laue Diffraction Snapshot From Crystals Of
A Photosynthetic Reaction Centre 3 Millisecond Following
Photoactivation
pdb|3T6E|H Chain H, Crystal Structure Of The Reaction Centre From
Blastochloris Viridis Strain Dsm 133 (Atcc 19567)
Substrain-94
pdb|4AC5|H Chain H, Lipidic Sponge Phase Crystal Structure Of The Bl. Viridis
Reaction Centre Solved Using Serial Femtosecond
Crystallography
Length = 258
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 59 LRPGGR-LIIPVGPEGSAQNLEQIDKNLDGTITRTPL 94
L+P G L+ VGP A+ E +D +DG PL
Sbjct: 101 LQPTGNPLVDAVGPASYAERAEVVDATVDGKAKIVPL 137
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 17 LRPGGR-LIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLID 57
L+P G L+ VGP A+ E +D +DG PL D
Sbjct: 101 LQPTGNPLVDAVGPASYAERAEVVDATVDGKAKIVPLRVATD 142
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
Length = 636
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 28 GPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNL 78
G E S + +K L TI T LR GG+++IPV G AQ L
Sbjct: 382 GHEDVQPSRNRAEKELVKTIYST--------LRRGGKILIPVFAVGRAQEL 424
>pdb|4GZY|D Chain D, Crystal Structures Of Bacterial Rna Polymerase Paused
Elongation Complexes
pdb|4GZZ|D Chain D, Crystal Structures Of Bacterial Rna Polymerase Paused
Elongation Complexes
Length = 1534
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 14 IDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPE 72
+D L GR PV GS + L + L G R L ++ GR +I VGP+
Sbjct: 578 VDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQ 636
>pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|N Chain N, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1SMY|D Chain D, Structural Basis For Transcription Regulation By Alarmone
Ppgpp
pdb|1SMY|N Chain N, Structural Basis For Transcription Regulation By Alarmone
Ppgpp
pdb|1ZYR|D Chain D, Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Streptolydigin
pdb|1ZYR|N Chain N, Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Streptolydigin
pdb|2A68|D Chain D, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifabutin
pdb|2A68|N Chain N, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifabutin
pdb|2A69|D Chain D, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifapentin
pdb|2A69|N Chain N, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifapentin
pdb|2A6E|D Chain D, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme
pdb|2A6E|N Chain N, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme
pdb|2A6H|D Chain D, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Sterptolydigin
pdb|2A6H|N Chain N, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Sterptolydigin
pdb|2CW0|D Chain D, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme At 3.3 Angstroms Resolution
pdb|2CW0|N Chain N, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme At 3.3 Angstroms Resolution
pdb|2BE5|D Chain D, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Inhibitor Tagetitoxin
pdb|2BE5|N Chain N, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Inhibitor Tagetitoxin
pdb|2O5I|D Chain D, Crystal Structure Of The T. Thermophilus Rna Polymerase
Elongation Complex
pdb|2O5I|N Chain N, Crystal Structure Of The T. Thermophilus Rna Polymerase
Elongation Complex
pdb|2O5J|D Chain D, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog
pdb|2O5J|N Chain N, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog
pdb|2PPB|D Chain D, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog And
Antibiotic Streptolydigin
pdb|2PPB|N Chain N, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog And
Antibiotic Streptolydigin
pdb|3DXJ|D Chain D, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Myxopyronin
pdb|3DXJ|N Chain N, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Myxopyronin
pdb|3EQL|D Chain D, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Myxopyronin
pdb|3EQL|N Chain N, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Myxopyronin
pdb|3AOH|D Chain D, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOH|I Chain I, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOH|N Chain N, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOI|D Chain D, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
pdb|3AOI|I Chain I, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
pdb|3AOI|N Chain N, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
pdb|4G7H|D Chain D, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex
pdb|4G7H|N Chain N, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex
pdb|4G7O|D Chain D, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 2 Nt Of Rna
pdb|4G7O|N Chain N, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 2 Nt Of Rna
pdb|4G7Z|D Chain D, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 5-Bru At Template-Strand
Position +1
pdb|4G7Z|N Chain N, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 5-Bru At Template-Strand
Position +1
Length = 1524
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 14 IDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPE 72
+D L GR PV GS + L + L G R L ++ GR +I VGP+
Sbjct: 578 VDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQ 636
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 35 SLEQIDKNLDGTITRTPLMQLIDQLRP--GGRLIIPVGPEGSAQNLEQI----DKNLDGT 88
+ + D + DG ITR ++ ++D + G + +P + +++I DKN DG
Sbjct: 104 AFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGK 163
Query: 89 IT 90
+T
Sbjct: 164 LT 165
>pdb|4HPP|A Chain A, Crystal Structure Of Novel Glutamine Synthase Homolog
Length = 443
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 5 SFWGNQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNL---DGT----ITRTPLMQLID 57
S WG+ L P R+ + GP+ +A +L+ + NL DGT R+ L ++
Sbjct: 58 SPWGSHGDLRLLPDPNSRVRVEQGPDAAAPALDYLHGNLVETDGTPWPACPRSLLRAEVE 117
Query: 58 QLRPGGRLII 67
+ R G +I
Sbjct: 118 RYRDSGLQVI 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,928,807
Number of Sequences: 62578
Number of extensions: 154980
Number of successful extensions: 412
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 27
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)