Query psy5587
Match_columns 126
No_of_seqs 175 out of 1434
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 21:22:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2518 Pcm Protein-L-isoaspar 99.8 1.3E-19 2.8E-24 140.2 9.2 95 10-106 110-205 (209)
2 PF01135 PCMT: Protein-L-isoas 99.7 1.7E-17 3.7E-22 128.1 7.7 95 10-106 113-208 (209)
3 KOG1661|consensus 99.5 6.4E-14 1.4E-18 109.0 7.9 97 14-112 138-236 (237)
4 PRK13942 protein-L-isoaspartat 99.3 2.8E-11 6E-16 92.8 9.6 70 35-107 142-211 (212)
5 PRK13944 protein-L-isoaspartat 99.2 1E-10 2.2E-15 89.1 9.0 66 36-103 140-205 (205)
6 TIGR00080 pimt protein-L-isoas 99.2 1.6E-10 3.5E-15 88.3 9.8 71 36-109 144-214 (215)
7 PRK00312 pcm protein-L-isoaspa 98.9 9.6E-09 2.1E-13 78.0 9.8 69 36-106 142-210 (212)
8 PRK13943 protein-L-isoaspartat 98.0 2E-05 4.3E-10 64.6 7.6 72 36-108 147-219 (322)
9 COG2518 Pcm Protein-L-isoaspar 97.9 2.5E-05 5.3E-10 60.8 5.3 55 8-72 150-204 (209)
10 PF01135 PCMT: Protein-L-isoas 97.7 2.9E-05 6.4E-10 60.0 3.4 58 5-72 150-207 (209)
11 KOG1661|consensus 97.2 0.00049 1.1E-08 54.1 4.7 56 8-72 174-229 (237)
12 PRK13944 protein-L-isoaspartat 96.4 0.0094 2E-07 45.2 5.9 52 7-69 153-204 (205)
13 PRK13942 protein-L-isoaspartat 95.3 0.057 1.2E-06 41.2 6.1 54 7-72 156-209 (212)
14 TIGR00080 pimt protein-L-isoas 95.1 0.079 1.7E-06 40.2 6.2 55 6-72 156-210 (215)
15 PRK00312 pcm protein-L-isoaspa 92.5 0.41 8.8E-06 36.1 5.8 53 9-72 157-209 (212)
16 PF15025 DUF4524: Domain of un 81.0 4.5 9.9E-05 30.0 5.1 70 46-126 74-145 (148)
17 COG2242 CobL Precorrin-6B meth 75.9 1.8 4E-05 33.3 1.8 32 38-69 102-135 (187)
18 PF12847 Methyltransf_18: Meth 73.1 3.4 7.4E-05 27.1 2.4 33 35-67 67-109 (112)
19 PRK14103 trans-aconitate 2-met 61.3 5.8 0.00013 30.6 1.9 34 37-70 88-127 (255)
20 PRK00107 gidB 16S rRNA methylt 61.2 12 0.00026 28.2 3.5 37 36-72 110-148 (187)
21 TIGR02469 CbiT precorrin-6Y C5 61.0 5.3 0.00012 26.4 1.4 33 37-69 87-122 (124)
22 PF08241 Methyltransf_11: Meth 60.4 5.6 0.00012 24.8 1.4 32 36-67 58-95 (95)
23 smart00828 PKS_MT Methyltransf 57.3 12 0.00027 27.8 3.1 32 37-68 66-103 (224)
24 PRK13943 protein-L-isoaspartat 56.8 14 0.0003 30.4 3.4 34 9-42 162-196 (322)
25 PF13489 Methyltransf_23: Meth 56.0 7.5 0.00016 26.9 1.5 35 37-71 77-117 (161)
26 PF02353 CMAS: Mycolic acid cy 54.2 12 0.00026 29.9 2.6 35 34-68 123-165 (273)
27 COG4106 Tam Trans-aconitate me 53.0 6.1 0.00013 31.7 0.7 39 34-72 88-132 (257)
28 PLN02232 ubiquinone biosynthes 51.7 12 0.00027 27.0 2.2 33 36-68 42-80 (160)
29 TIGR00417 speE spermidine synt 49.5 11 0.00023 29.7 1.7 34 36-69 143-186 (270)
30 PF01209 Ubie_methyltran: ubiE 47.5 12 0.00025 29.2 1.5 32 37-68 115-152 (233)
31 PLN02233 ubiquinone biosynthes 44.9 20 0.00043 28.1 2.5 33 37-69 144-182 (261)
32 PRK00811 spermidine synthase; 43.6 18 0.00039 28.8 2.1 34 36-69 148-191 (283)
33 TIGR02752 MenG_heptapren 2-hep 43.4 40 0.00088 25.2 3.9 33 37-69 113-151 (231)
34 KOG4300|consensus 43.4 26 0.00057 28.0 2.9 35 35-69 142-182 (252)
35 TIGR00138 gidB 16S rRNA methyl 43.0 12 0.00027 27.8 1.0 36 36-72 107-145 (181)
36 PF08242 Methyltransf_12: Meth 42.2 12 0.00027 24.1 0.8 29 37-65 65-99 (99)
37 PF09857 DUF2084: Uncharacteri 41.5 78 0.0017 21.4 4.6 50 10-61 7-56 (85)
38 PRK13687 hypothetical protein; 41.2 70 0.0015 21.6 4.3 50 10-61 7-56 (85)
39 KOG1270|consensus 40.7 9.3 0.0002 31.2 0.1 34 36-69 156-195 (282)
40 PLN02244 tocopherol O-methyltr 39.0 21 0.00045 29.1 1.9 32 37-68 185-222 (340)
41 PRK11088 rrmA 23S rRNA methylt 37.9 28 0.0006 27.2 2.3 33 37-70 150-182 (272)
42 PRK11873 arsM arsenite S-adeno 37.6 30 0.00065 26.8 2.5 31 37-67 145-181 (272)
43 PRK00377 cbiT cobalt-precorrin 37.3 13 0.00028 27.6 0.4 32 37-68 110-144 (198)
44 TIGR00452 methyltransferase, p 36.9 22 0.00049 29.1 1.7 33 36-68 186-224 (314)
45 TIGR01934 MenG_MenH_UbiE ubiqu 35.6 36 0.00079 24.8 2.6 31 37-67 105-141 (223)
46 COG0421 SpeE Spermidine syntha 34.9 13 0.00027 30.2 -0.0 63 3-68 116-189 (282)
47 PTZ00098 phosphoethanolamine N 34.5 29 0.00062 27.2 1.9 32 37-68 116-155 (263)
48 PLN02490 MPBQ/MSBQ methyltrans 34.5 30 0.00066 28.7 2.1 31 37-67 177-213 (340)
49 KOG1250|consensus 34.3 16 0.00035 31.6 0.5 39 35-73 188-227 (457)
50 PRK04457 spermidine synthase; 31.0 26 0.00056 27.6 1.1 34 37-70 135-178 (262)
51 PLN02366 spermidine synthase 31.0 34 0.00073 27.9 1.8 31 37-67 164-204 (308)
52 PRK08317 hypothetical protein; 30.6 38 0.00082 24.8 2.0 32 37-68 86-123 (241)
53 PLN02336 phosphoethanolamine N 30.0 45 0.00098 28.1 2.5 32 37-68 331-368 (475)
54 PRK00536 speE spermidine synth 29.8 27 0.00058 28.0 1.1 34 37-70 138-172 (262)
55 COG4122 Predicted O-methyltran 29.6 27 0.00059 27.3 1.0 58 10-67 100-164 (219)
56 PRK08287 cobalt-precorrin-6Y C 29.4 20 0.00044 26.1 0.3 33 37-69 96-131 (187)
57 PRK01683 trans-aconitate 2-met 29.2 40 0.00086 25.8 1.9 33 37-69 92-130 (258)
58 COG1064 AdhP Zn-dependent alco 27.4 41 0.00089 28.1 1.8 59 9-68 199-258 (339)
59 PLN02396 hexaprenyldihydroxybe 27.1 30 0.00066 28.4 1.0 33 37-69 197-235 (322)
60 COG2227 UbiG 2-polyprenyl-3-me 26.0 33 0.00072 27.5 1.0 32 37-68 123-160 (243)
61 COG3811 Uncharacterized protei 25.9 1.7E+02 0.0038 19.6 4.2 52 10-63 7-58 (85)
62 PRK11036 putative S-adenosyl-L 25.3 33 0.00071 26.5 0.8 33 37-69 111-149 (255)
63 TIGR00477 tehB tellurite resis 25.1 49 0.0011 24.5 1.7 32 37-68 93-132 (195)
64 PRK15068 tRNA mo(5)U34 methylt 24.7 50 0.0011 26.8 1.8 32 36-67 187-224 (322)
65 COG2226 UbiE Methylase involve 24.4 49 0.0011 26.2 1.6 33 36-68 117-155 (238)
66 PRK11207 tellurite resistance 24.1 50 0.0011 24.5 1.6 31 37-67 94-132 (197)
67 PRK03612 spermidine synthase; 23.9 50 0.0011 28.7 1.8 34 36-69 371-415 (521)
68 PRK15451 tRNA cmo(5)U34 methyl 21.4 89 0.0019 24.0 2.6 31 38-68 125-163 (247)
69 cd02440 AdoMet_MTases S-adenos 21.2 68 0.0015 19.1 1.5 33 36-68 64-103 (107)
70 PRK10258 biotin biosynthesis p 20.7 79 0.0017 24.0 2.1 33 37-69 102-140 (251)
71 PF08955 BofC_C: BofC C-termin 20.5 59 0.0013 21.4 1.2 42 17-62 15-56 (75)
72 PRK01581 speE spermidine synth 20.0 78 0.0017 26.9 2.1 33 37-69 225-268 (374)
No 1
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.3e-19 Score=140.22 Aligned_cols=95 Identities=32% Similarity=0.463 Sum_probs=82.0
Q ss_pred hHHHHhhcCCCcE-EEEeecCCCCcceEEEEEEecCceecCccchhhhhhccCCcEEEEEecCCCCceEEEEEEEcCCCc
Q psy5587 10 QSKLIDQLRPGGR-LIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGT 88 (126)
Q Consensus 10 p~~LleQL~~~G~-lv~pvg~~g~~~~~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~~~~~~q~l~~~~r~~~g~ 88 (126)
+++.|++|...++ ++..||..|+ ...+|||+|++++|++++|++|++||++||+|++|++.. +.|.+++++|+++++
T Consensus 110 A~~~L~~lg~~nV~v~~gDG~~G~-~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG~~-~~q~l~~~~k~~~~~ 187 (209)
T COG2518 110 ARRNLETLGYENVTVRHGDGSKGW-PEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSG-PAQRLLRITKDGDGN 187 (209)
T ss_pred HHHHHHHcCCCceEEEECCcccCC-CCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEccC-CcEEEEEEEEcCCCc
Confidence 5677999998653 3555554443 677999999999999999999999999999999999955 689999999998888
Q ss_pred EEEEEeecEEEEeecCCC
Q psy5587 89 ITRTPLMQVVYVPLTDKQ 106 (126)
Q Consensus 89 ~~~~~l~~v~fvPL~~~~ 106 (126)
+.++.+++++|+||.+..
T Consensus 188 ~~~~~l~~v~~vPl~~~~ 205 (209)
T COG2518 188 FERRDLFNVRFVPLVGGD 205 (209)
T ss_pred EEEeeeccceeeecCCcc
Confidence 999999999999999954
No 2
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.72 E-value=1.7e-17 Score=128.11 Aligned_cols=95 Identities=29% Similarity=0.515 Sum_probs=73.7
Q ss_pred hHHHHhhcCCCc-EEEEeecCCCCcceEEEEEEecCceecCccchhhhhhccCCcEEEEEecCCCCceEEEEEEEcCCCc
Q psy5587 10 QSKLIDQLRPGG-RLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGT 88 (126)
Q Consensus 10 p~~LleQL~~~G-~lv~pvg~~g~~~~~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~~~~~~q~l~~~~r~~~g~ 88 (126)
++..++.+.... .++..++..+. ...++||+|+++++++++|.+|++||++||+|++|++. .+.|.+++++|.++|+
T Consensus 113 A~~~l~~~~~~nv~~~~gdg~~g~-~~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~~-~~~~~l~~~~k~~~g~ 190 (209)
T PF01135_consen 113 ARRNLARLGIDNVEVVVGDGSEGW-PEEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIGQ-GGSQRLVRITKKGDGE 190 (209)
T ss_dssp HHHHHHHHTTHSEEEEES-GGGTT-GGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEESS-SSSEEEEEEEEETTTE
T ss_pred HHHHHHHhccCceeEEEcchhhcc-ccCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEcc-CCceEEEEEEEeCCCc
Confidence 355677777655 45666665554 56789999999999999999999999999999999997 4789999999998899
Q ss_pred EEEEEeecEEEEeecCCC
Q psy5587 89 ITRTPLMQVVYVPLTDKQ 106 (126)
Q Consensus 89 ~~~~~l~~v~fvPL~~~~ 106 (126)
++.+.+++|+|+||.+..
T Consensus 191 ~~~~~~~~~~fvpl~~~~ 208 (209)
T PF01135_consen 191 FSREELFPVRFVPLVGGE 208 (209)
T ss_dssp EEEEEEEEE---B-BSCC
T ss_pred EEEEEEeeEEEEeccCCC
Confidence 999999999999999864
No 3
>KOG1661|consensus
Probab=99.50 E-value=6.4e-14 Score=109.03 Aligned_cols=97 Identities=42% Similarity=0.620 Sum_probs=82.7
Q ss_pred HhhcCCCcEEEEeecCCCCc--ceEEEEEEecCceecCccchhhhhhccCCcEEEEEecCCCCceEEEEEEEcCCCcEEE
Q psy5587 14 IDQLRPGGRLIIPVGPEGSA--QSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITR 91 (126)
Q Consensus 14 leQL~~~G~lv~pvg~~g~~--~~~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~~~~~~q~l~~~~r~~~g~~~~ 91 (126)
.+.|+. |.+.+-+|+ +.+ ++.++||+|+++||++++|+++++||++||+|++|+++....|.+..+.|+.+|.+..
T Consensus 138 ~~~~~~-~~l~ivvGD-gr~g~~e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~ 215 (237)
T KOG1661|consen 138 SSKLKR-GELSIVVGD-GRKGYAEQAPYDAIHVGAAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKL 215 (237)
T ss_pred hhhhcc-CceEEEeCC-ccccCCccCCcceEEEccCccccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceee
Confidence 677776 555555775 332 6788999999999999999999999999999999999765678888899988899999
Q ss_pred EEeecEEEEeecCCCCCCCCc
Q psy5587 92 TPLMQVVYVPLTDKQHQWPGR 112 (126)
Q Consensus 92 ~~l~~v~fvPL~~~~~~~~~~ 112 (126)
+.+|.++|+|+.....+|...
T Consensus 216 ~~~f~v~yvPlt~~~~q~~~~ 236 (237)
T KOG1661|consen 216 RTLFSVRYVPLTSRESQPSRF 236 (237)
T ss_pred eEeeceEEEeccccccccCCC
Confidence 999999999999988877543
No 4
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=2.8e-11 Score=92.82 Aligned_cols=70 Identities=31% Similarity=0.499 Sum_probs=63.0
Q ss_pred eEEEEEEecCceecCccchhhhhhccCCcEEEEEecCCCCceEEEEEEEcCCCcEEEEEeecEEEEeecCCCC
Q psy5587 35 SLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQH 107 (126)
Q Consensus 35 ~~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~~~~~~q~l~~~~r~~~g~~~~~~l~~v~fvPL~~~~~ 107 (126)
...+||+|+++++++++|++|+++|++||++++|++.. .|.+.+++|+ +++++.+.+++++|+||++..+
T Consensus 142 ~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~ 211 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSY--SQELIRVEKD-NGKIIKKKLGEVAFVPLIGKNG 211 (212)
T ss_pred cCCCcCEEEECCCcccchHHHHHhhCCCcEEEEEEcCC--CcEEEEEEEE-CCEEEEEEeccEEEEecccCCC
Confidence 45789999999999999999999999999999999864 5889999997 4679999999999999998764
No 5
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.20 E-value=1e-10 Score=89.10 Aligned_cols=66 Identities=27% Similarity=0.402 Sum_probs=59.4
Q ss_pred EEEEEEecCceecCccchhhhhhccCCcEEEEEecCCCCceEEEEEEEcCCCcEEEEEeecEEEEeec
Q psy5587 36 LEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLT 103 (126)
Q Consensus 36 ~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~~~~~~q~l~~~~r~~~g~~~~~~l~~v~fvPL~ 103 (126)
..+||+|+++++.+.+|+.|+++|++||++++|+... ..|.+++++|. ++.++.+.+++|+||||+
T Consensus 140 ~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~f~pl~ 205 (205)
T PRK13944 140 HAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEEG-VGQVLYKVVKR-GEKVEKRAITYVLFVPLR 205 (205)
T ss_pred CCCccEEEEccCcchhhHHHHHhcCcCcEEEEEEcCC-CceEEEEEEEe-CCEEEEEEeceEEEEecC
Confidence 4689999999999999999999999999999999865 56889999997 457999999999999985
No 6
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.19 E-value=1.6e-10 Score=88.26 Aligned_cols=71 Identities=31% Similarity=0.411 Sum_probs=64.1
Q ss_pred EEEEEEecCceecCccchhhhhhccCCcEEEEEecCCCCceEEEEEEEcCCCcEEEEEeecEEEEeecCCCCCC
Q psy5587 36 LEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 109 (126)
Q Consensus 36 ~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~~~~~~q~l~~~~r~~~g~~~~~~l~~v~fvPL~~~~~~~ 109 (126)
..+||+|+++++.+.+|+.+.++|++||++++|++. ..+.+.+++|. ++.+..+.++++.|+||.++.++|
T Consensus 144 ~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~ 214 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE--YLQVLKRAEKR-GGEIIIKDVEPVAFVPLVGGEGFQ 214 (215)
T ss_pred cCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEEcC--CceEEEEEEEe-CCEEEEEEeeeEEEEeCCCCccCC
Confidence 458999999999999999999999999999999986 46889999987 567999999999999999988775
No 7
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.93 E-value=9.6e-09 Score=77.99 Aligned_cols=69 Identities=32% Similarity=0.489 Sum_probs=61.1
Q ss_pred EEEEEEecCceecCccchhhhhhccCCcEEEEEecCCCCceEEEEEEEcCCCcEEEEEeecEEEEeecCCC
Q psy5587 36 LEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQ 106 (126)
Q Consensus 36 ~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~~~~~~q~l~~~~r~~~g~~~~~~l~~v~fvPL~~~~ 106 (126)
..+||.|+++++.+.+|..+.++|++||++++|++.. +.+.+.+++|. ++.++.+.+++++|+|+.++.
T Consensus 142 ~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~ 210 (212)
T PRK00312 142 YAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVGGE-EQQLLTRVRKR-GGRFEREVLEEVRFVPLVKGE 210 (212)
T ss_pred CCCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEcCC-CceEEEEEEEc-CCeEEEEEEccEEEEecCCCC
Confidence 4689999999999999999999999999999999843 56788888885 567999999999999999865
No 8
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.03 E-value=2e-05 Score=64.65 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=58.6
Q ss_pred EEEEEEecCceecCccchhhhhhccCCcEEEEEecCC-CCceEEEEEEEcCCCcEEEEEeecEEEEeecCCCCC
Q psy5587 36 LEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPE-GSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQ 108 (126)
Q Consensus 36 ~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~~~-~~~q~l~~~~r~~~g~~~~~~l~~v~fvPL~~~~~~ 108 (126)
..+||.|+++++++++|..|+++|++||++++|+... ...+...+++|. ++.++...+++++|++..|.-+.
T Consensus 147 ~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~~~~r~-~~~~~~~~~~~~~~l~~~G~lg~ 219 (322)
T PRK13943 147 FAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFIKAGGNLGN 219 (322)
T ss_pred cCCccEEEECCchHHhHHHHHHhcCCCCEEEEEeCCccCCCCceEEEEec-CCCceEEEEEEeeEEcccchHHH
Confidence 3579999999999999999999999999999998642 134566777886 44689899999999999775543
No 9
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=2.5e-05 Score=60.84 Aligned_cols=55 Identities=38% Similarity=0.578 Sum_probs=43.9
Q ss_pred cChHHHHhhcCCCcEEEEeecCCCCcceEEEEEEecCceecCccchhhhhhccCCcEEEEEecCC
Q psy5587 8 GNQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPE 72 (126)
Q Consensus 8 ~~p~~LleQL~~~G~lv~pvg~~g~~~~~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~~~ 72 (126)
-.|+.|++||++||+||+|+|.+ ..|....+.+.-.+. +.+...+++.|+|+.+.
T Consensus 150 ~vP~~Ll~QL~~gGrlv~PvG~~-~~q~l~~~~k~~~~~---------~~~~~l~~v~~vPl~~~ 204 (209)
T COG2518 150 EVPEALLDQLKPGGRLVIPVGSG-PAQRLLRITKDGDGN---------FERRDLFNVRFVPLVGG 204 (209)
T ss_pred CCCHHHHHhcccCCEEEEEEccC-CcEEEEEEEEcCCCc---------EEEeeeccceeeecCCc
Confidence 46899999999999999999953 458888998874432 25667789999999763
No 10
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.72 E-value=2.9e-05 Score=60.02 Aligned_cols=58 Identities=31% Similarity=0.484 Sum_probs=42.7
Q ss_pred ccccChHHHHhhcCCCcEEEEeecCCCCcceEEEEEEecCceecCccchhhhhhccCCcEEEEEecCC
Q psy5587 5 SFWGNQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPE 72 (126)
Q Consensus 5 ~~~~~p~~LleQL~~~G~lv~pvg~~g~~~~~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~~~ 72 (126)
+.+..|+.|++||++||+||+|++. +..+....|+|.-.+. +++...+++.|+|+.+.
T Consensus 150 a~~~ip~~l~~qL~~gGrLV~pi~~-~~~~~l~~~~k~~~g~---------~~~~~~~~~~fvpl~~~ 207 (209)
T PF01135_consen 150 AVPEIPEALLEQLKPGGRLVAPIGQ-GGSQRLVRITKKGDGE---------FSREELFPVRFVPLVGG 207 (209)
T ss_dssp BBSS--HHHHHTEEEEEEEEEEESS-SSSEEEEEEEEETTTE---------EEEEEEEEE---B-BSC
T ss_pred ccchHHHHHHHhcCCCcEEEEEEcc-CCceEEEEEEEeCCCc---------EEEEEEeeEEEEeccCC
Confidence 4567899999999999999999997 4568899999986443 26778899999999864
No 11
>KOG1661|consensus
Probab=97.24 E-value=0.00049 Score=54.14 Aligned_cols=56 Identities=45% Similarity=0.686 Sum_probs=44.3
Q ss_pred cChHHHHhhcCCCcEEEEeecCCCCcceEEEEEEecCceecCccchhhhhhccCCcEEEEEecCC
Q psy5587 8 GNQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPE 72 (126)
Q Consensus 8 ~~p~~LleQL~~~G~lv~pvg~~g~~~~~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~~~ 72 (126)
..|+.|++||++||+|++|++.++..|....+|+.-.+. +..-..-+++++|+++.
T Consensus 174 ~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gk---------i~~~~~f~v~yvPlt~~ 229 (237)
T KOG1661|consen 174 ELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGK---------IKLRTLFSVRYVPLTSR 229 (237)
T ss_pred ccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCc---------eeeeEeeceEEEecccc
Confidence 468999999999999999999866668888888875443 23445568888999875
No 12
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.42 E-value=0.0094 Score=45.24 Aligned_cols=52 Identities=29% Similarity=0.375 Sum_probs=40.0
Q ss_pred ccChHHHHhhcCCCcEEEEeecCCCCcceEEEEEEecCceecCccchhhhhhccCCcEEEEEe
Q psy5587 7 WGNQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPV 69 (126)
Q Consensus 7 ~~~p~~LleQL~~~G~lv~pvg~~g~~~~~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl 69 (126)
...|+.++++|++||+|++|++.+ ..+....|+|...+ +++...+++.|+|+
T Consensus 153 ~~~~~~l~~~L~~gG~lvi~~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~f~pl 204 (205)
T PRK13944 153 STIPSALVRQLKDGGVLVIPVEEG-VGQVLYKVVKRGEK----------VEKRAITYVLFVPL 204 (205)
T ss_pred chhhHHHHHhcCcCcEEEEEEcCC-CceEEEEEEEeCCE----------EEEEEeceEEEEec
Confidence 456788999999999999999864 34777888885322 24566789999997
No 13
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.33 E-value=0.057 Score=41.24 Aligned_cols=54 Identities=28% Similarity=0.410 Sum_probs=40.8
Q ss_pred ccChHHHHhhcCCCcEEEEeecCCCCcceEEEEEEecCceecCccchhhhhhccCCcEEEEEecCC
Q psy5587 7 WGNQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPE 72 (126)
Q Consensus 7 ~~~p~~LleQL~~~G~lv~pvg~~g~~~~~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~~~ 72 (126)
...|+.++++|++||+|++|++. . .+....+.+...+. .+....++.|+|+.+.
T Consensus 156 ~~~~~~l~~~LkpgG~lvi~~~~-~-~~~~~~~~~~~~~~----------~~~~~~~~~f~~~~~~ 209 (212)
T PRK13942 156 PDIPKPLIEQLKDGGIMVIPVGS-Y-SQELIRVEKDNGKI----------IKKKLGEVAFVPLIGK 209 (212)
T ss_pred ccchHHHHHhhCCCcEEEEEEcC-C-CcEEEEEEEECCEE----------EEEEeccEEEEecccC
Confidence 34578899999999999999985 3 47778888864222 4555678899998764
No 14
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.08 E-value=0.079 Score=40.24 Aligned_cols=55 Identities=27% Similarity=0.243 Sum_probs=42.7
Q ss_pred cccChHHHHhhcCCCcEEEEeecCCCCcceEEEEEEecCceecCccchhhhhhccCCcEEEEEecCC
Q psy5587 6 FWGNQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPE 72 (126)
Q Consensus 6 ~~~~p~~LleQL~~~G~lv~pvg~~g~~~~~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~~~ 72 (126)
....++.+.++|++||++++|.+. + .+....|.+...+. .+....++.|+|+..+
T Consensus 156 ~~~~~~~~~~~L~~gG~lv~~~~~-~-~~~~~~~~~~~~~~----------~~~~~~~~~~~pl~~~ 210 (215)
T TIGR00080 156 GPKIPEALIDQLKEGGILVMPVGE-Y-LQVLKRAEKRGGEI----------IIKDVEPVAFVPLVGG 210 (215)
T ss_pred cccccHHHHHhcCcCcEEEEEEcC-C-ceEEEEEEEeCCEE----------EEEEeeeEEEEeCCCC
Confidence 456788899999999999999985 3 47777888754332 4667788999999764
No 15
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=92.54 E-value=0.41 Score=36.06 Aligned_cols=53 Identities=25% Similarity=0.328 Sum_probs=37.3
Q ss_pred ChHHHHhhcCCCcEEEEeecCCCCcceEEEEEEecCceecCccchhhhhhccCCcEEEEEecCC
Q psy5587 9 NQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPE 72 (126)
Q Consensus 9 ~p~~LleQL~~~G~lv~pvg~~g~~~~~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~~~ 72 (126)
.++.+.++|++||+++++.+. +..+....|.++-... ..-...++.|+|+.++
T Consensus 157 ~~~~l~~~L~~gG~lv~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~p~~~~ 209 (212)
T PRK00312 157 IPRALLEQLKEGGILVAPVGG-EEQQLLTRVRKRGGRF----------EREVLEEVRFVPLVKG 209 (212)
T ss_pred hhHHHHHhcCCCcEEEEEEcC-CCceEEEEEEEcCCeE----------EEEEEccEEEEecCCC
Confidence 467899999999999999984 3456677777742221 3334577788888753
No 16
>PF15025 DUF4524: Domain of unknown function (DUF4524)
Probab=80.97 E-value=4.5 Score=30.00 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=41.4
Q ss_pred eecCccchhhhhhccCCcEEEEEecC-CCC-ceEEEEEEEcCCCcEEEEEeecEEEEeecCCCCCCCCceeEEEEEEEee
Q psy5587 46 TITRTPLMQLIDQLRPGGRLIIPVGP-EGS-AQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPGRSHEVCRFKVKF 123 (126)
Q Consensus 46 ~av~~iP~~ll~QL~~GGrlvvPl~~-~~~-~q~l~~~~r~~~g~~~~~~l~~v~fvPL~~~~~~~~~~~~~~~~~~~~~ 123 (126)
+..|.+|+.++...+.-- ++.-+.. .++ ...-..+.+..+|+++.+.+.+...+-|..... .|.|+|
T Consensus 74 a~~Pyl~~~li~~~rk~~-~~~~~~~~~WP~~~~~~~~~~~~~G~v~i~S~dg~A~l~L~~~~~----------~ftV~f 142 (148)
T PF15025_consen 74 ATRPYLPESLIPSERKKR-IFIDISEVAWPSSSSDDSVIRDQDGSVEISSLDGHAYLCLSPSQQ----------EFTVKF 142 (148)
T ss_pred CCCCccchHhChhhceee-eeecceeeeCCCccCCCcEEECCCCeEEEEEeCCcEEEEEcccCC----------EEEEEE
Confidence 345778888877764432 3321111 111 111113456678889999998877776654433 589999
Q ss_pred cCC
Q psy5587 124 PCK 126 (126)
Q Consensus 124 ~~~ 126 (126)
+||
T Consensus 143 ~~k 145 (148)
T PF15025_consen 143 LCK 145 (148)
T ss_pred EEE
Confidence 996
No 17
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=75.89 E-value=1.8 Score=33.28 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=26.1
Q ss_pred EEEEecCceec--CccchhhhhhccCCcEEEEEe
Q psy5587 38 QIDKNLDGTIT--RTPLMQLIDQLRPGGRLIIPV 69 (126)
Q Consensus 38 ~fDrI~v~~av--~~iP~~ll~QL~~GGrlvvPl 69 (126)
.+|+|+++++. +.|.++..+.|++||++|+-.
T Consensus 102 ~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 102 SPDAIFIGGGGNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEe
Confidence 69999998772 346678889999999999964
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=73.09 E-value=3.4 Score=27.14 Aligned_cols=33 Identities=33% Similarity=0.449 Sum_probs=23.6
Q ss_pred eEEEEEEecCce-ecCccc---------hhhhhhccCCcEEEE
Q psy5587 35 SLEQIDKNLDGT-ITRTPL---------MQLIDQLRPGGRLII 67 (126)
Q Consensus 35 ~~~~fDrI~v~~-av~~iP---------~~ll~QL~~GGrlvv 67 (126)
...+||.|+... .....+ +.+.+.|++||++++
T Consensus 67 ~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 67 FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 345699998887 333332 456788999999986
No 19
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=61.34 E-value=5.8 Score=30.65 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=26.9
Q ss_pred EEEEEecCceecCccch------hhhhhccCCcEEEEEec
Q psy5587 37 EQIDKNLDGTITRTPLM------QLIDQLRPGGRLIIPVG 70 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP~------~ll~QL~~GGrlvvPl~ 70 (126)
..||.|+...+...+|+ .+.+.|++||++++.+.
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 47999999888777764 45677999999998653
No 20
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=61.18 E-value=12 Score=28.21 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=27.3
Q ss_pred EEEEEEecCcee--cCccchhhhhhccCCcEEEEEecCC
Q psy5587 36 LEQIDKNLDGTI--TRTPLMQLIDQLRPGGRLIIPVGPE 72 (126)
Q Consensus 36 ~~~fDrI~v~~a--v~~iP~~ll~QL~~GGrlvvPl~~~ 72 (126)
..+||.|+..+. .+.+.....+.|++||++++.....
T Consensus 110 ~~~fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 110 EEKFDVVTSRAVASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred CCCccEEEEccccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 457999987643 2244556778999999999987654
No 21
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=60.97 E-value=5.3 Score=26.40 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=24.8
Q ss_pred EEEEEecCceecCc---cchhhhhhccCCcEEEEEe
Q psy5587 37 EQIDKNLDGTITRT---PLMQLIDQLRPGGRLIIPV 69 (126)
Q Consensus 37 ~~fDrI~v~~av~~---iP~~ll~QL~~GGrlvvPl 69 (126)
..||.|+...+... +.....+.|++||++++.+
T Consensus 87 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 47999988764433 5566788899999999765
No 22
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=60.37 E-value=5.6 Score=24.76 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=23.9
Q ss_pred EEEEEEecCceecCccc------hhhhhhccCCcEEEE
Q psy5587 36 LEQIDKNLDGTITRTPL------MQLIDQLRPGGRLII 67 (126)
Q Consensus 36 ~~~fDrI~v~~av~~iP------~~ll~QL~~GGrlvv 67 (126)
...||.|+...+...++ ..+.+-|++||++++
T Consensus 58 ~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 58 DNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 45799998888877664 345677999999875
No 23
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=57.29 E-value=12 Score=27.84 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=23.0
Q ss_pred EEEEEecCceecCccc------hhhhhhccCCcEEEEE
Q psy5587 37 EQIDKNLDGTITRTPL------MQLIDQLRPGGRLIIP 68 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP------~~ll~QL~~GGrlvvP 68 (126)
..||.|+.......++ ..+.+.|++||++++-
T Consensus 66 ~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 66 DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEE
Confidence 4799998766555444 3456679999999864
No 24
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=56.81 E-value=14 Score=30.42 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=23.0
Q ss_pred ChHHHHhhcCCCcEEEEeecCC-CCcceEEEEEEe
Q psy5587 9 NQSKLIDQLRPGGRLIIPVGPE-GSAQSLEQIDKN 42 (126)
Q Consensus 9 ~p~~LleQL~~~G~lv~pvg~~-g~~~~~~~fDrI 42 (126)
.|+.++++|++||+++++++.. ...+....+++.
T Consensus 162 ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~~~~r~ 196 (322)
T PRK13943 162 VPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK 196 (322)
T ss_pred hHHHHHHhcCCCCEEEEEeCCccCCCCceEEEEec
Confidence 4678999999999999998642 112444444443
No 25
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=55.99 E-value=7.5 Score=26.86 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=27.6
Q ss_pred EEEEEecCceecCccch------hhhhhccCCcEEEEEecC
Q psy5587 37 EQIDKNLDGTITRTPLM------QLIDQLRPGGRLIIPVGP 71 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP~------~ll~QL~~GGrlvvPl~~ 71 (126)
..||.|+...+...+|. .+.+.|++||.+++-.-.
T Consensus 77 ~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 77 GSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred cchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 46999999988888874 456778999999886543
No 26
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=54.18 E-value=12 Score=29.91 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=23.4
Q ss_pred ceEEEEEEecCceecCccch----hh----hhhccCCcEEEEE
Q psy5587 34 QSLEQIDKNLDGTITRTPLM----QL----IDQLRPGGRLIIP 68 (126)
Q Consensus 34 ~~~~~fDrI~v~~av~~iP~----~l----l~QL~~GGrlvvP 68 (126)
....+||+|+.-.+.+.+.. .+ -+-|+|||++++=
T Consensus 123 ~~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 123 DLPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp G---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred ccCCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 44449999988888888853 23 3559999999863
No 27
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=52.98 E-value=6.1 Score=31.66 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=32.3
Q ss_pred ceEEEEEEecCceecCccch------hhhhhccCCcEEEEEecCC
Q psy5587 34 QSLEQIDKNLDGTITRTPLM------QLIDQLRPGGRLIIPVGPE 72 (126)
Q Consensus 34 ~~~~~fDrI~v~~av~~iP~------~ll~QL~~GGrlvvPl~~~ 72 (126)
+...+.|.|+.+++..-+|+ .|+.||+|||+|-|-+-+.
T Consensus 88 ~p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 88 KPEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred CCCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 34557999999999988884 6899999999999987654
No 28
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=51.74 E-value=12 Score=26.96 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=25.6
Q ss_pred EEEEEEecCceecCccch------hhhhhccCCcEEEEE
Q psy5587 36 LEQIDKNLDGTITRTPLM------QLIDQLRPGGRLIIP 68 (126)
Q Consensus 36 ~~~fDrI~v~~av~~iP~------~ll~QL~~GGrlvvP 68 (126)
...||.|+...+...+++ .+.+-|++||++++-
T Consensus 42 ~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 42 DCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 346999988877777653 567789999999864
No 29
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=49.52 E-value=11 Score=29.71 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=24.0
Q ss_pred EEEEEEecCceecCccc----------hhhhhhccCCcEEEEEe
Q psy5587 36 LEQIDKNLDGTITRTPL----------MQLIDQLRPGGRLIIPV 69 (126)
Q Consensus 36 ~~~fDrI~v~~av~~iP----------~~ll~QL~~GGrlvvPl 69 (126)
..+||.|++....+.-| +.+.+.|++||++++-.
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 35899998876533322 24567899999999853
No 30
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=47.47 E-value=12 Score=29.20 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=23.8
Q ss_pred EEEEEecCceecCccch------hhhhhccCCcEEEEE
Q psy5587 37 EQIDKNLDGTITRTPLM------QLIDQLRPGGRLIIP 68 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP~------~ll~QL~~GGrlvvP 68 (126)
..||.|.++.+..++|+ ++.+-|+|||++++-
T Consensus 115 ~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 56999999988888773 567789999999863
No 31
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=44.95 E-value=20 Score=28.08 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=25.3
Q ss_pred EEEEEecCceecCccc------hhhhhhccCCcEEEEEe
Q psy5587 37 EQIDKNLDGTITRTPL------MQLIDQLRPGGRLIIPV 69 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP------~~ll~QL~~GGrlvvPl 69 (126)
..||.|+.+.+...++ .++.+.|++||++++--
T Consensus 144 ~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 144 CYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred CCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 4699998887777665 34677899999998753
No 32
>PRK00811 spermidine synthase; Provisional
Probab=43.60 E-value=18 Score=28.81 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=23.9
Q ss_pred EEEEEEecCceecCccc----------hhhhhhccCCcEEEEEe
Q psy5587 36 LEQIDKNLDGTITRTPL----------MQLIDQLRPGGRLIIPV 69 (126)
Q Consensus 36 ~~~fDrI~v~~av~~iP----------~~ll~QL~~GGrlvvPl 69 (126)
...||.|++...-+.-| ....+.|++||++++-.
T Consensus 148 ~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 148 ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 45799999876544333 23467899999999743
No 33
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=43.41 E-value=40 Score=25.16 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=23.5
Q ss_pred EEEEEecCceecCccch------hhhhhccCCcEEEEEe
Q psy5587 37 EQIDKNLDGTITRTPLM------QLIDQLRPGGRLIIPV 69 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP~------~ll~QL~~GGrlvvPl 69 (126)
..||.|+.+.+...++. .+.+.|++||++++.-
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 47999987766655542 3466799999998643
No 34
>KOG4300|consensus
Probab=43.39 E-value=26 Score=28.00 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=25.3
Q ss_pred eEEEEEEecCc---eecCccchh---hhhhccCCcEEEEEe
Q psy5587 35 SLEQIDKNLDG---TITRTPLMQ---LIDQLRPGGRLIIPV 69 (126)
Q Consensus 35 ~~~~fDrI~v~---~av~~iP~~---ll~QL~~GGrlvvPl 69 (126)
..+.||.|+.| +++.+.-.+ ...-|+|||+++.--
T Consensus 142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 45679999887 666665444 456799999999753
No 35
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=43.01 E-value=12 Score=27.75 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=25.8
Q ss_pred EEEEEEecCceecCccc---hhhhhhccCCcEEEEEecCC
Q psy5587 36 LEQIDKNLDGTITRTPL---MQLIDQLRPGGRLIIPVGPE 72 (126)
Q Consensus 36 ~~~fDrI~v~~av~~iP---~~ll~QL~~GGrlvvPl~~~ 72 (126)
...||.|+..+ ...++ +.+.+.|++||++++-.+..
T Consensus 107 ~~~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 107 EEQFDVITSRA-LASLNVLLELTLNLLKVGGYFLAYKGKK 145 (181)
T ss_pred cCCccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 45799998765 44443 45567799999999887643
No 36
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=42.18 E-value=12 Score=24.08 Aligned_cols=29 Identities=24% Similarity=0.364 Sum_probs=15.1
Q ss_pred EEEEEecCceecCccch------hhhhhccCCcEE
Q psy5587 37 EQIDKNLDGTITRTPLM------QLIDQLRPGGRL 65 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP~------~ll~QL~~GGrl 65 (126)
..||.|+.......+++ .+.+.|+|||++
T Consensus 65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 58999988877777642 345678899975
No 37
>PF09857 DUF2084: Uncharacterized protein conserved in bacteria (DUF2084); InterPro: IPR018654 This domain is found in various hypothetical bacterial proteins that have no known function.
Probab=41.46 E-value=78 Score=21.42 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=34.2
Q ss_pred hHHHHhhcCCCcEEEEeecCCCCcceEEEEEEecCceecCccchhhhhhccC
Q psy5587 10 QSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRP 61 (126)
Q Consensus 10 p~~LleQL~~~G~lv~pvg~~g~~~~~~~fDrI~v~~av~~iP~~ll~QL~~ 61 (126)
.++.|.-|+-||++.+-.++.|.-....-|.+- +.-.+.--.+.+..|+.
T Consensus 7 EQR~LHvLAqGG~I~~~rd~~gri~~v~C~TRe--G~~l~dctl~vF~kLK~ 56 (85)
T PF09857_consen 7 EQRVLHVLAQGGRIRHERDDSGRITAVECYTRE--GWLLSDCTLAVFRKLKR 56 (85)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCEEEEEEEccC--CeeeCCCCHHHHHHHhh
Confidence 356888999999999988876654455667663 33334445567778875
No 38
>PRK13687 hypothetical protein; Provisional
Probab=41.16 E-value=70 Score=21.63 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=34.5
Q ss_pred hHHHHhhcCCCcEEEEeecCCCCcceEEEEEEecCceecCccchhhhhhccC
Q psy5587 10 QSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRP 61 (126)
Q Consensus 10 p~~LleQL~~~G~lv~pvg~~g~~~~~~~fDrI~v~~av~~iP~~ll~QL~~ 61 (126)
.++.|.-|+-||++.+-.++.|.-....-|.+- +...+..--+++.+|+-
T Consensus 7 EQRvLHvLAqGGrI~~~rd~~gri~~v~C~TRe--G~~l~dctl~vF~kLK~ 56 (85)
T PRK13687 7 EQRTLHVLAQGGRIEHERDDSGRITAVECYTRE--GWLLADCTLAVFKKLKR 56 (85)
T ss_pred HHHHHHHHhcCCeEEEEECCCCcEEEEEEEccC--CcccCCCCHHHHHHHHh
Confidence 456889999999999988876654455566663 33444555677788875
No 39
>KOG1270|consensus
Probab=40.74 E-value=9.3 Score=31.20 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=26.9
Q ss_pred EEEEEEecCceecCcc--chh----hhhhccCCcEEEEEe
Q psy5587 36 LEQIDKNLDGTITRTP--LMQ----LIDQLRPGGRLIIPV 69 (126)
Q Consensus 36 ~~~fDrI~v~~av~~i--P~~----ll~QL~~GGrlvvPl 69 (126)
...||.++..-.++.+ |+. +.+.|+|||++|+.-
T Consensus 156 ~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 156 TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 3459999988888887 655 467799999999864
No 40
>PLN02244 tocopherol O-methyltransferase
Probab=39.02 E-value=21 Score=29.14 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=24.8
Q ss_pred EEEEEecCceecCccch------hhhhhccCCcEEEEE
Q psy5587 37 EQIDKNLDGTITRTPLM------QLIDQLRPGGRLIIP 68 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP~------~ll~QL~~GGrlvvP 68 (126)
..||.|+...+...+|+ .+.+.|++||++++.
T Consensus 185 ~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 185 GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 57999988777766653 456779999999874
No 41
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=37.95 E-value=28 Score=27.23 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=25.4
Q ss_pred EEEEEecCceecCccchhhhhhccCCcEEEEEec
Q psy5587 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVG 70 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvPl~ 70 (126)
..||.|+...+ +.....+.+.|++||++++..-
T Consensus 150 ~sfD~I~~~~~-~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 150 QSLDAIIRIYA-PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred CceeEEEEecC-CCCHHHHHhhccCCCEEEEEeC
Confidence 46999876543 5566788899999999998653
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=37.62 E-value=30 Score=26.78 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=22.6
Q ss_pred EEEEEecCceecCccc------hhhhhhccCCcEEEE
Q psy5587 37 EQIDKNLDGTITRTPL------MQLIDQLRPGGRLII 67 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP------~~ll~QL~~GGrlvv 67 (126)
..||.|+........| ..+.+-|++||++++
T Consensus 145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEE
Confidence 3799998776544333 355677999999997
No 43
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=37.32 E-value=13 Score=27.62 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=22.8
Q ss_pred EEEEEecCceecCccc---hhhhhhccCCcEEEEE
Q psy5587 37 EQIDKNLDGTITRTPL---MQLIDQLRPGGRLIIP 68 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP---~~ll~QL~~GGrlvvP 68 (126)
..||+|+++.....++ ....+.|++||++++-
T Consensus 110 ~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 110 EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 4699998866544433 3456779999999873
No 44
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=36.93 E-value=22 Score=29.07 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=24.7
Q ss_pred EEEEEEecCceecCccc------hhhhhhccCCcEEEEE
Q psy5587 36 LEQIDKNLDGTITRTPL------MQLIDQLRPGGRLIIP 68 (126)
Q Consensus 36 ~~~fDrI~v~~av~~iP------~~ll~QL~~GGrlvvP 68 (126)
...||.|+..+....++ ..+.+.|++||.+++-
T Consensus 186 ~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 186 LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 34799998887665543 3456789999999973
No 45
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=35.63 E-value=36 Score=24.80 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=22.1
Q ss_pred EEEEEecCceecCccc------hhhhhhccCCcEEEE
Q psy5587 37 EQIDKNLDGTITRTPL------MQLIDQLRPGGRLII 67 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP------~~ll~QL~~GGrlvv 67 (126)
..||.|+...+....+ +.+...|++||++++
T Consensus 105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 4699997765554433 355678999999886
No 46
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=34.86 E-value=13 Score=30.17 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=36.6
Q ss_pred ccccccChHHHHhhcCCCcEEEEeecCCCCcc-eEEEEEEecCceecCccc----------hhhhhhccCCcEEEEE
Q psy5587 3 SRSFWGNQSKLIDQLRPGGRLIIPVGPEGSAQ-SLEQIDKNLDGTITRTPL----------MQLIDQLRPGGRLIIP 68 (126)
Q Consensus 3 ~~~~~~~p~~LleQL~~~G~lv~pvg~~g~~~-~~~~fDrI~v~~av~~iP----------~~ll~QL~~GGrlvvP 68 (126)
+|+|.+.+..... .+--.+++-+|- .+.. ....||.|++...-+.=| +...+.|+++|++++=
T Consensus 116 ar~~l~~~~~~~~--dpRv~i~i~Dg~-~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 116 ARKYLPEPSGGAD--DPRVEIIIDDGV-EFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHhccCcccccC--CCceEEEeccHH-HHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 3555555553333 344455555542 1112 222799999976555444 2345668999999986
No 47
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=34.51 E-value=29 Score=27.23 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=22.3
Q ss_pred EEEEEecCceecCccc--------hhhhhhccCCcEEEEE
Q psy5587 37 EQIDKNLDGTITRTPL--------MQLIDQLRPGGRLIIP 68 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP--------~~ll~QL~~GGrlvvP 68 (126)
..||.|+...++..++ ..+.+.|+|||++++-
T Consensus 116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4799998755444333 2345779999999874
No 48
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=34.46 E-value=30 Score=28.70 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=24.1
Q ss_pred EEEEEecCceecCccc------hhhhhhccCCcEEEE
Q psy5587 37 EQIDKNLDGTITRTPL------MQLIDQLRPGGRLII 67 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP------~~ll~QL~~GGrlvv 67 (126)
..||.|+...++..+| ..+.+.|++||++++
T Consensus 177 ~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 4699998877776655 357788999999875
No 49
>KOG1250|consensus
Probab=34.29 E-value=16 Score=31.59 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=32.9
Q ss_pred eEEEEEEecCceecCccchhhhhhcc-CCcEEEEEecCCC
Q psy5587 35 SLEQIDKNLDGTITRTPLMQLIDQLR-PGGRLIIPVGPEG 73 (126)
Q Consensus 35 ~~~~fDrI~v~~av~~iP~~ll~QL~-~GGrlvvPl~~~~ 73 (126)
..-|||-..+.++...|-.++++|++ +.|-+++|+|+++
T Consensus 188 yI~pfDhP~I~aGqgTig~EIl~ql~~~~~AI~vpVGGGG 227 (457)
T KOG1250|consen 188 YIPPFDHPDIWAGQGTIGLEILEQLKEPDGAIVVPVGGGG 227 (457)
T ss_pred ecCCCCCchhhcCcchHHHHHHHhhcCCCCeEEEecCCch
Confidence 45589999999999999999999987 5679999999763
No 50
>PRK04457 spermidine synthase; Provisional
Probab=31.00 E-value=26 Score=27.65 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=22.6
Q ss_pred EEEEEecCcee-cCccch---------hhhhhccCCcEEEEEec
Q psy5587 37 EQIDKNLDGTI-TRTPLM---------QLIDQLRPGGRLIIPVG 70 (126)
Q Consensus 37 ~~fDrI~v~~a-v~~iP~---------~ll~QL~~GGrlvvPl~ 70 (126)
..||.|++.+- ...+|. ...+.|++||++++-+.
T Consensus 135 ~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 135 HSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 47999987642 123442 23467999999998543
No 51
>PLN02366 spermidine synthase
Probab=30.96 E-value=34 Score=27.93 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=22.6
Q ss_pred EEEEEecCceecCccch----------hhhhhccCCcEEEE
Q psy5587 37 EQIDKNLDGTITRTPLM----------QLIDQLRPGGRLII 67 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP~----------~ll~QL~~GGrlvv 67 (126)
..||.|++.+.-+.-|. ...+.|++||++++
T Consensus 164 ~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 164 GTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred CCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 47999999765554332 34567999999976
No 52
>PRK08317 hypothetical protein; Provisional
Probab=30.60 E-value=38 Score=24.78 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=23.6
Q ss_pred EEEEEecCceecCccc------hhhhhhccCCcEEEEE
Q psy5587 37 EQIDKNLDGTITRTPL------MQLIDQLRPGGRLIIP 68 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP------~~ll~QL~~GGrlvvP 68 (126)
..||.|+.......++ ..+.+.|++||.+++-
T Consensus 86 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 86 GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred CCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEE
Confidence 5799998876554433 4667889999999864
No 53
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=30.03 E-value=45 Score=28.10 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=24.6
Q ss_pred EEEEEecCceecCccc------hhhhhhccCCcEEEEE
Q psy5587 37 EQIDKNLDGTITRTPL------MQLIDQLRPGGRLIIP 68 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP------~~ll~QL~~GGrlvvP 68 (126)
..||.|+...+...++ ..+.+.|++||++++-
T Consensus 331 ~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 331 NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence 4699998877776654 3566789999998864
No 54
>PRK00536 speE spermidine synthase; Provisional
Probab=29.79 E-value=27 Score=28.00 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=23.7
Q ss_pred EEEEEecCceecCc-cchhhhhhccCCcEEEEEec
Q psy5587 37 EQIDKNLDGTITRT-PLMQLIDQLRPGGRLIIPVG 70 (126)
Q Consensus 37 ~~fDrI~v~~av~~-iP~~ll~QL~~GGrlvvPl~ 70 (126)
..||.|++....+. --..+.+.|++||++++=-+
T Consensus 138 ~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 138 KKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCC
Confidence 46999998854321 12356788999999998433
No 55
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=29.59 E-value=27 Score=27.33 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=36.8
Q ss_pred hHHHHhhcCCCcEEEEee-cCCCCc-c--eEEEEEEecCceecCccchh---hhhhccCCcEEEE
Q psy5587 10 QSKLIDQLRPGGRLIIPV-GPEGSA-Q--SLEQIDKNLDGTITRTPLMQ---LIDQLRPGGRLII 67 (126)
Q Consensus 10 p~~LleQL~~~G~lv~pv-g~~g~~-~--~~~~fDrI~v~~av~~iP~~---ll~QL~~GGrlvv 67 (126)
+...++.-....++..-. |+.-.. . ...+||.|.+.++-..-|+. .+..|++||.+++
T Consensus 100 A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 100 ARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred HHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEE
Confidence 344555555555544444 221111 1 24689999999887777754 4778999999997
No 56
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=29.37 E-value=20 Score=26.14 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=23.1
Q ss_pred EEEEEecCceecCccc---hhhhhhccCCcEEEEEe
Q psy5587 37 EQIDKNLDGTITRTPL---MQLIDQLRPGGRLIIPV 69 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP---~~ll~QL~~GGrlvvPl 69 (126)
..||.|+.++....++ ....+.|++||++++-.
T Consensus 96 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 96 GKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred cCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence 4699998765433333 34567899999998854
No 57
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=29.18 E-value=40 Score=25.78 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=24.8
Q ss_pred EEEEEecCceecCccch------hhhhhccCCcEEEEEe
Q psy5587 37 EQIDKNLDGTITRTPLM------QLIDQLRPGGRLIIPV 69 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP~------~ll~QL~~GGrlvvPl 69 (126)
..||.|+...+...+++ .+.+.|++||++++-+
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 37999988877766543 3566799999998754
No 58
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=27.35 E-value=41 Score=28.13 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=35.5
Q ss_pred ChHHHHhhcCCCcEEEEeecCCCCc-ceEEEEEEecCceecCccchhhhhhccCCcEEEEE
Q psy5587 9 NQSKLIDQLRPGGRLIIPVGPEGSA-QSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIP 68 (126)
Q Consensus 9 ~p~~LleQL~~~G~lv~pvg~~g~~-~~~~~fDrI~v~~av~~iP~~ll~QL~~GGrlvvP 68 (126)
+++.+-..++-|...++-..+.... .....+|.|+.+.. +.--...++.|+.||++++.
T Consensus 199 ~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 199 SEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred ChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHHHHHhcCCEEEEE
Confidence 4455544444555554443221111 11112999999987 66666677999999999964
No 59
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=27.09 E-value=30 Score=28.36 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=25.0
Q ss_pred EEEEEecCceecCccc------hhhhhhccCCcEEEEEe
Q psy5587 37 EQIDKNLDGTITRTPL------MQLIDQLRPGGRLIIPV 69 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP------~~ll~QL~~GGrlvvPl 69 (126)
..||.|+.......++ ..+.+.|++||++++-.
T Consensus 197 ~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 197 RKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred CCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 4699998877766664 34567789999999764
No 60
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=25.98 E-value=33 Score=27.46 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=26.1
Q ss_pred EEEEEecCceecCccchh------hhhhccCCcEEEEE
Q psy5587 37 EQIDKNLDGTITRTPLMQ------LIDQLRPGGRLIIP 68 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP~~------ll~QL~~GGrlvvP 68 (126)
..||.|+.---++.+|.. ..+.++|||.+|+-
T Consensus 123 ~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 123 GQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence 589999888888888753 46779999999984
No 61
>COG3811 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.88 E-value=1.7e+02 Score=19.56 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=35.3
Q ss_pred hHHHHhhcCCCcEEEEeecCCCCcceEEEEEEecCceecCccchhhhhhccCCc
Q psy5587 10 QSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGG 63 (126)
Q Consensus 10 p~~LleQL~~~G~lv~pvg~~g~~~~~~~fDrI~v~~av~~iP~~ll~QL~~GG 63 (126)
.++.+..|+-||++-+-..+.+.-....-|.|- +...+..--+++..|+--+
T Consensus 7 eQRtLH~LAqGGrIe~~rd~~grI~~v~C~tRd--Gw~l~dctlavF~kLKrK~ 58 (85)
T COG3811 7 EQRTLHALAQGGRIEIERDASGRITSVECYTRD--GWLLPDCTLAVFRKLKRKK 58 (85)
T ss_pred HHHHHHHHhcCCeEEEEecCCCcEEEEEEeccc--ccccCCccHHHHHHHHhcc
Confidence 356889999999998877654432344456663 4456666778888887643
No 62
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=25.34 E-value=33 Score=26.45 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=23.9
Q ss_pred EEEEEecCceecCccc------hhhhhhccCCcEEEEEe
Q psy5587 37 EQIDKNLDGTITRTPL------MQLIDQLRPGGRLIIPV 69 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP------~~ll~QL~~GGrlvvPl 69 (126)
..||.|+.......++ ..+.+.|++||++++-.
T Consensus 111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 4699998876655443 35577899999998753
No 63
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=25.11 E-value=49 Score=24.55 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=20.5
Q ss_pred EEEEEecCceecCccc--------hhhhhhccCCcEEEEE
Q psy5587 37 EQIDKNLDGTITRTPL--------MQLIDQLRPGGRLIIP 68 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP--------~~ll~QL~~GGrlvvP 68 (126)
..||.|+.......++ ..+.+.|++||.+++-
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3599987765443332 3456668999996543
No 64
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=24.70 E-value=50 Score=26.84 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=23.7
Q ss_pred EEEEEEecCceecCccc------hhhhhhccCCcEEEE
Q psy5587 36 LEQIDKNLDGTITRTPL------MQLIDQLRPGGRLII 67 (126)
Q Consensus 36 ~~~fDrI~v~~av~~iP------~~ll~QL~~GGrlvv 67 (126)
...||.|+..+.+..++ ..+.+.|++||++++
T Consensus 187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEE
Confidence 45799998876665443 356778999999986
No 65
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=24.37 E-value=49 Score=26.19 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=24.8
Q ss_pred EEEEEEecCceecCccc---h---hhhhhccCCcEEEEE
Q psy5587 36 LEQIDKNLDGTITRTPL---M---QLIDQLRPGGRLIIP 68 (126)
Q Consensus 36 ~~~fDrI~v~~av~~iP---~---~ll~QL~~GGrlvvP 68 (126)
...||.+.+..+.+.++ . ++.+-|+|||++++-
T Consensus 117 D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 34699998888887765 3 456669999988764
No 66
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=24.06 E-value=50 Score=24.55 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=20.5
Q ss_pred EEEEEecCceecCccc--------hhhhhhccCCcEEEE
Q psy5587 37 EQIDKNLDGTITRTPL--------MQLIDQLRPGGRLII 67 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP--------~~ll~QL~~GGrlvv 67 (126)
..||.|+...+...++ ..+.+.|++||.+++
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4599998776544333 245567799998543
No 67
>PRK03612 spermidine synthase; Provisional
Probab=23.92 E-value=50 Score=28.73 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=24.4
Q ss_pred EEEEEEecCceecCccc-----------hhhhhhccCCcEEEEEe
Q psy5587 36 LEQIDKNLDGTITRTPL-----------MQLIDQLRPGGRLIIPV 69 (126)
Q Consensus 36 ~~~fDrI~v~~av~~iP-----------~~ll~QL~~GGrlvvPl 69 (126)
...||.|++...-+..| +...+.|++||++++-.
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 35799999886554443 24567899999999843
No 68
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=21.39 E-value=89 Score=24.01 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=22.0
Q ss_pred EEEEecCceecCccc--------hhhhhhccCCcEEEEE
Q psy5587 38 QIDKNLDGTITRTPL--------MQLIDQLRPGGRLIIP 68 (126)
Q Consensus 38 ~fDrI~v~~av~~iP--------~~ll~QL~~GGrlvvP 68 (126)
.+|.|+.+.+...++ ..+.+.|++||++++-
T Consensus 125 ~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 125 NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 478887765554443 4567789999999874
No 69
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=21.17 E-value=68 Score=19.14 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=21.2
Q ss_pred EEEEEEecCceecCc---cc----hhhhhhccCCcEEEEE
Q psy5587 36 LEQIDKNLDGTITRT---PL----MQLIDQLRPGGRLIIP 68 (126)
Q Consensus 36 ~~~fDrI~v~~av~~---iP----~~ll~QL~~GGrlvvP 68 (126)
...||.|+....... .+ ..+.+.++++|.+++-
T Consensus 64 ~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 346999888765432 22 3445668888888753
No 70
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=20.70 E-value=79 Score=24.02 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=23.5
Q ss_pred EEEEEecCceecCccc------hhhhhhccCCcEEEEEe
Q psy5587 37 EQIDKNLDGTITRTPL------MQLIDQLRPGGRLIIPV 69 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP------~~ll~QL~~GGrlvvPl 69 (126)
..||.|+...+...++ ..+.+.|++||++++..
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 3699998876654432 34566799999999864
No 71
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=20.52 E-value=59 Score=21.43 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=21.6
Q ss_pred cCCCcEEEEeecCCCCcceEEEEEEecCceecCccchhhhhhccCC
Q psy5587 17 LRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPG 62 (126)
Q Consensus 17 L~~~G~lv~pvg~~g~~~~~~~fDrI~v~~av~~iP~~ll~QL~~G 62 (126)
|..+|.|.+..|..+.......|-.| -+..++....++|+.|
T Consensus 15 i~~dG~LslF~G~P~~~~vI~sFfqI----dv~~Les~~~~~L~~G 56 (75)
T PF08955_consen 15 ISEDGVLSLFEGPPGEEKVIQSFFQI----DVEKLESSDHDQLKRG 56 (75)
T ss_dssp EETTTEEEEBSSS-STT-BS-----------TTTS-HHHHHHHHH-
T ss_pred EcCCCcEEEEecCCCCCchheeeeec----CHHHcCHhHHHHHhCC
Confidence 45689999988875543444556565 3345677777888764
No 72
>PRK01581 speE spermidine synthase; Validated
Probab=20.02 E-value=78 Score=26.89 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=22.0
Q ss_pred EEEEEecCceecCccc-----------hhhhhhccCCcEEEEEe
Q psy5587 37 EQIDKNLDGTITRTPL-----------MQLIDQLRPGGRLIIPV 69 (126)
Q Consensus 37 ~~fDrI~v~~av~~iP-----------~~ll~QL~~GGrlvvPl 69 (126)
..||.|++...-+..+ ....+.|++||++++-.
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 4699999885332211 23456799999988743
Done!