RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5587
(126 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 89.5 bits (223), Expect = 2e-23
Identities = 38/55 (69%), Positives = 43/55 (78%)
Query: 55 LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 109
LIDQL+PGGRLI+PVGP G Q LEQ DK DG+I PLM V+YVPLTDK+ QW
Sbjct: 168 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQW 222
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 79.6 bits (197), Expect = 1e-19
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 55 LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPL 102
LI+QL GGRLI+PVGP+G +Q ++Q DK+ +G + T LM V+YVPL
Sbjct: 180 LINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 227
Score = 67.3 bits (165), Expect = 5e-15
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 13 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLM 53
LI+QL GGRLI+PVGP+G +Q ++Q DK+ +G + T LM
Sbjct: 180 LINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLM 220
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 78.4 bits (194), Expect = 4e-19
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 55 LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPGRSH 114
LI+QL+ GG+LIIPVG Q L ++ K DG I V +VPL + + W H
Sbjct: 175 LIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDG-IKIKNHGGVAFVPLIGE-YGWKEHHH 232
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 69.6 bits (171), Expect = 8e-16
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 55 LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPL 102
L+D L G+LIIP+ + + Q L +I K +G I + L V +V L
Sbjct: 179 LVDLLAENGKLIIPIEEDYT-QVLYEITKK-NGKIIKDRLFDVCFVSL 224
Score = 57.2 bits (139), Expect = 3e-11
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 13 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLM 53
L+D L G+LIIP+ + + Q L +I K +G I + L
Sbjct: 179 LVDLLAENGKLIIPIEEDYT-QVLYEITKK-NGKIIKDRLF 217
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 68.3 bits (168), Expect = 2e-15
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 55 LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG 111
LI QL+ GG+L++PVG Q L +K D I V +VPL K + G
Sbjct: 163 LIRQLKDGGKLLMPVGR--YLQRLVLAEKRGDE-IIIKDCGPVAFVPLVGK-EGFQG 215
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 69.0 bits (169), Expect = 4e-15
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 55 LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQ 106
QL+ GGR+I+P+ + S + + K D + ++ ++
Sbjct: 161 WFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNL 212
Score = 55.9 bits (135), Expect = 1e-10
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 13 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLM 53
QL+ GGR+I+P+ + S + + K D + +
Sbjct: 161 WFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKL 201
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 62.6 bits (153), Expect = 4e-13
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 55 LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP 110
+QL+ GG +I+P+G Q L ++ K + + L +V++ + + +
Sbjct: 151 PYEQLKEGGIMILPIGVGRV-QKLYKVIKKGNS-PSLENLGEVMFGRIGGL-YGFY 203
Score = 50.3 bits (121), Expect = 1e-08
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 13 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRT 50
+QL+ GG +I+P+G Q L ++ K +
Sbjct: 151 PYEQLKEGGIMILPIGVGRV-QKLYKVIKKGNSPSLEN 187
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 58.4 bits (142), Expect = 9e-12
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 55 LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLT 103
L+ QL GG L++PVG E Q L+++ + G + V +VPL
Sbjct: 160 LMTQLDEGGILVLPVGEEH--QYLKRVRRR-GGEFIIDTVEAVRFVPLV 205
Score = 47.2 bits (113), Expect = 1e-07
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 13 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLM 53
L+ QL GG L++PVG E Q L+++ + G +
Sbjct: 160 LMTQLDEGGILVLPVGEEH--QYLKRVRRR-GGEFIIDTVE 197
>2hps_A Coelenterazine-binding protein with bound coelent;
bioluminescence, southeast collabora structural
genomics, secsg, structural genomics, PSI; HET: CTZ;
1.72A {Renilla muelleri} PDB: 2hq8_A
Length = 186
Score = 33.9 bits (78), Expect = 0.005
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNL----EQIDKNLDGTITRT 92
+++D DG I+R + ++ +L E + Q +Q+ I+
Sbjct: 21 QRVDVTGDGFISREDYELIAVRIAKIAKL-SAEKAEETRQEFLRVADQLGLAPGVRISVE 79
Score = 24.7 bits (54), Expect = 8.0
Identities = 8/65 (12%), Positives = 16/65 (24%), Gaps = 5/65 (7%)
Query: 36 LEQIDKNLDGTITRT---PLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRT 92
+Q+ I+ G + V + ID + DG ++
Sbjct: 65 ADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIM--YDCIDTDKDGYVSLP 122
Query: 93 PLMQV 97
Sbjct: 123 EFKAF 127
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 33.0 bits (76), Expect = 0.014
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 37 EQIDKNLDGTITRTPLMQ-LIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTI 89
Q+D N DG + R L++ ++ G + + ++ I D + +G I
Sbjct: 47 RQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYI 104
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 32.4 bits (74), Expect = 0.022
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 11/94 (11%)
Query: 39 IDKNLDGTITRTPLMQLIDQL---------RPGGRLIIPVGPEGSAQNLEQIDKNLDGTI 89
D++ +G I R+ + G+ + D++ D I
Sbjct: 13 FDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRI 72
Query: 90 TRTPLMQVVYVPLTDKQHQWPGRSHEVCR--FKV 121
TR + L DK ++ + V
Sbjct: 73 TREEFVTGAVKRLRDKPDRFAEMARPFLHAALGV 106
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 32.1 bits (73), Expect = 0.029
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 40 DKNLDGTITRTPLMQLIDQ-LRPGGRLIIPVGPEGSAQN-LEQIDKNLDGTIT 90
D G I R + Q++ L G + E E+ D DG I
Sbjct: 132 DLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKID 184
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 32.0 bits (72), Expect = 0.031
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 39 IDKNLDGTITRTPLMQ----LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTI 89
D + +G I L ++ +L+P ++ + + D DG +
Sbjct: 20 FDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRL 74
Score = 27.3 bits (60), Expect = 1.2
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 12 KLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIP-VG 70
++ +L+P ++ + + D DG + L +I LI
Sbjct: 39 HMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREA 98
Query: 71 PEGSAQNLEQI----DKNLDGTITRTPLMQV 97
P ++ +I D + G I+ L
Sbjct: 99 PLDNSVEFMKIWRKYDADSSGYISAAELKNF 129
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.032
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 19 PGGRLIIPVGPEGSAQSLEQIDKNLDGT----ITRTPL-MQLIDQLRPGGRLIIPVGPEG 73
+ IPV L + ++ I R P+ + Q + I+ GP G
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA--THILDFGPGG 508
Query: 74 SAQNLEQIDKNLDGTITRT 92
++ +N DGT R
Sbjct: 509 ASGLGVLTHRNKDGTGVRV 527
Score = 26.6 bits (58), Expect = 3.2
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 22/60 (36%)
Query: 24 IIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIP----VGPE---GSAQ 76
I+ GP G++ +N DGT G R+I+ + P+ G Q
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGT---------------GVRVIVAGTLDINPDDDYGFKQ 545
Score = 26.2 bits (57), Expect = 4.0
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 38/113 (33%)
Query: 6 FW-GNQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGR 64
F+ G + + P +P P SLE N +G +P M
Sbjct: 304 FFIGVRCY---EAYP--NTSLP--PSILEDSLE----NNEGV--PSP-M----------- 338
Query: 65 LIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPGRSHEVC 117
L I S EQ+ ++ T + P + V + L + G + V
Sbjct: 339 LSI------SNLTQEQVQDYVNKTNSHLPAGKQVEISLVN------GAKNLVV 379
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR
{Saccharopolyspora erythraea} SCOP: a.39.1.5
Length = 176
Score = 31.6 bits (72), Expect = 0.036
Identities = 6/62 (9%), Positives = 17/62 (27%), Gaps = 9/62 (14%)
Query: 39 IDKNLDGTITRTPLMQLIDQLR---------PGGRLIIPVGPEGSAQNLEQIDKNLDGTI 89
D + +G + R + + + + ++ DG++
Sbjct: 16 WDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSL 75
Query: 90 TR 91
T
Sbjct: 76 TE 77
Score = 25.1 bits (55), Expect = 6.0
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 36 LEQIDKNLDGTITRT---PLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRT 92
++ DG++T + + + + +GP + DKN DG I
Sbjct: 64 AKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGI-VGMCDKNADGQINAD 122
Query: 93 PLMQV 97
Sbjct: 123 EFAAW 127
Score = 25.1 bits (55), Expect = 6.7
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITR 91
DKN DG I + L + +A+ Q+D N +G ++
Sbjct: 111 CDKNADGQINADEFAAWLTALG--------MSKAEAAEAFNQVDTNGNGELSL 155
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 31.7 bits (72), Expect = 0.037
Identities = 6/59 (10%), Positives = 16/59 (27%), Gaps = 9/59 (15%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSA------QNLEQIDKNLDGTITR 91
D + DG + ++ D++ +L+ + + R
Sbjct: 45 FDLDSDGKMEMDEVLYWPDRM---RQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLR 100
Score = 27.5 bits (61), Expect = 1.3
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 5/66 (7%)
Query: 37 EQIDKNLDGTITR----TPLMQLIDQLRPGGRLIIPVGPEGSAQNL-EQIDKNLDGTITR 91
+ R + R R P + + + +D + DGT+
Sbjct: 88 LHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDV 147
Query: 92 TPLMQV 97
L +
Sbjct: 148 DELKTM 153
Score = 25.5 bits (56), Expect = 4.4
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITR 91
+D + DGT+ L ++ V E + E+ D + G + R
Sbjct: 137 LDDDGDGTVDVDELKTMMKAFD--------VPQEAAYTFFEKADTDKSGKLER 181
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 31.7 bits (72), Expect = 0.038
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 40 DKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNL-EQIDKNLDGTIT 90
D + +G I R L+ +I +R R + E + ++ID N DG ++
Sbjct: 98 DVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELS 149
Score = 24.7 bits (54), Expect = 9.4
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 14/66 (21%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTITRT 92
E D N DG I + + + G Q L D + +G I R
Sbjct: 59 ETFDFNKDGYIDFMEYVAALSLVLKGK----------VDQKLRWYFKLYDVDGNGCIDRG 108
Query: 93 PLMQVV 98
L+ ++
Sbjct: 109 ELLNII 114
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 32.0 bits (73), Expect = 0.040
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 37 EQIDKNLDGTIT----RTPLMQLIDQLRPGGRLIIPVGPEGSAQNL-EQIDKNLDGTI 89
++DKN DG + +L+ ++ E + + +D + +G I
Sbjct: 342 HKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYI 399
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 31.7 bits (72), Expect = 0.042
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 40 DKNLDGTITRTPLMQLIDQLRPGGRLIIP-VGPEGSAQN-LEQIDKNLDGTIT 90
D G I R L +++ L L++ E Q D+ DG I
Sbjct: 121 DLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKID 173
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 31.4 bits (71), Expect = 0.057
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 40 DKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI--------DKNLDGTIT 90
D + DGT+ R L +L++ L SA ++Q+ D + DGTI
Sbjct: 139 DFDDDGTLNREDLSRLVNCL-----TGEGEDTRLSASEMKQLIDNILEESDIDRDGTIN 192
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 30.9 bits (70), Expect = 0.059
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 40 DKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI--------DKNLDGTIT 90
D + DGT+ R L +L++ L SA ++Q+ D + DGTI
Sbjct: 108 DFDDDGTLNREDLSRLVNCL-----TGEGEDTRLSASEMKQLIDNILEESDIDRDGTIN 161
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function;
2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Length = 268
Score = 31.1 bits (71), Expect = 0.074
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 11/64 (17%)
Query: 21 GRLIIPV--GPEGSAQSLEQIDK---------NLDGTITRTPLMQLIDQLRPGGRLIIPV 69
R +P Q L+++ + ++ L G L+I
Sbjct: 146 YRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVF 205
Query: 70 GPEG 73
GPEG
Sbjct: 206 GPEG 209
Score = 25.3 bits (56), Expect = 6.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 11 SKLIDQLRPGGRLIIPVGPEG 31
S ++ L G L+I GPEG
Sbjct: 189 SAIVSSLPKGSSLLIVFGPEG 209
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 31.2 bits (71), Expect = 0.075
Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 37 EQIDKNLDGTIT----RTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGT 88
++D N DG + + + +I ++ + D + G+
Sbjct: 338 RKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGS 397
Query: 89 I 89
I
Sbjct: 398 I 398
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 30.0 bits (68), Expect = 0.075
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 28 GPEGSAQSLEQI-------DKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQ 80
G +G + L ++ D N G + R L +L V P + ++
Sbjct: 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTEL--------RVRPADAEAVFQR 69
Query: 81 IDKNLDGTIT 90
+D + DG IT
Sbjct: 70 LDADRDGAIT 79
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 30.6 bits (69), Expect = 0.092
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 40 DKNLDGTITRTPLMQLIDQL-RPGGRLIIPVGPEGSAQN-----LEQIDKNLDGTIT 90
D + DG ITR ++ ++D + + G + E + + +DKN DG +T
Sbjct: 109 DLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLT 165
Score = 25.6 bits (56), Expect = 5.0
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 14/67 (20%)
Query: 36 LEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTITR 91
D+N DG I + +Q + G + L D + DG ITR
Sbjct: 69 FNVFDENKDGRIEFSEFIQALSVTSRGTL----------DEKLRWAFKLYDLDNDGYITR 118
Query: 92 TPLMQVV 98
++ +V
Sbjct: 119 NEMLDIV 125
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 30.5 bits (69), Expect = 0.10
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 17/59 (28%)
Query: 40 DKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI--------DKNLDGTIT 90
D + D I+R L+Q++ + VG S + L I D++ D I+
Sbjct: 123 DLDKDDKISRDELLQVLRMM---------VGVNISDEQLGSIADRTIQEADQDGDSAIS 172
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 30.2 bits (68), Expect = 0.12
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 40 DKNLDGTITRTPLMQLIDQ-LRPGGRLIIPVGPEGSAQNL-----EQIDKNLDGTIT 90
D + +G I+ +++++D + G ++ E + + +DKN DG +T
Sbjct: 109 DLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLT 165
Score = 25.2 bits (55), Expect = 5.7
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 19/81 (23%)
Query: 27 VGPEGSAQSL-----EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI 81
P G + D + +G I + + G L
Sbjct: 55 FFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGEL----------NDKLIWA 104
Query: 82 ----DKNLDGTITRTPLMQVV 98
D + +G I+ ++++V
Sbjct: 105 FQLYDLDNNGLISYDEMLRIV 125
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 30.2 bits (68), Expect = 0.12
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 39 IDKNLDGTITRTPLMQLIDQL-RPGGRLIIPVGPEGSAQNL-----EQIDKNLDGTIT 90
D N DG I + +M ++ + G+ PV E + + +++DKN DG +T
Sbjct: 101 YDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVT 158
Score = 25.5 bits (56), Expect = 5.5
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 14/66 (21%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTITRT 92
D G++ + + L G + L D N DG I +
Sbjct: 63 NAFDTTQTGSVKFEDFVTALSILLRGTV----------HEKLRWTFNLYDINKDGYINKE 112
Query: 93 PLMQVV 98
+M +V
Sbjct: 113 EMMDIV 118
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 30.4 bits (69), Expect = 0.14
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVG-PEGSAQNL-EQIDKNLDGTI 89
+++DKN DG + + L++ + LR + + E N+ +++D + +G I
Sbjct: 362 KKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYI 416
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 29.9 bits (67), Expect = 0.15
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 39 IDKNLDGTITRTPLMQLIDQL-RPGGRLIIPVGPEGSAQNL-----EQIDKNLDGTIT 90
D N DG I + +M ++ + G+ PV E + + +++DKN DG +T
Sbjct: 134 YDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVT 191
Score = 25.7 bits (56), Expect = 4.0
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 14/66 (21%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTITRT 92
D G++ + + L G + L D N DG I +
Sbjct: 96 NAFDTTQTGSVKFEDFVTALSILLRGTV----------HEKLRWTFNLYDINKDGYINKE 145
Query: 93 PLMQVV 98
+M +V
Sbjct: 146 EMMDIV 151
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 29.9 bits (67), Expect = 0.16
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRP-GGRLIIPVGPEGSAQNL-----EQIDKNLDGTIT 90
D N DG IT+ ++ ++ + G+ PV E + + +++DKN DG +T
Sbjct: 147 YDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVT 204
Score = 24.8 bits (54), Expect = 7.8
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 19/80 (23%)
Query: 28 GPEGSAQSL-----EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI- 81
P+G + + D + +G ++ ++ + L G + L
Sbjct: 95 FPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTV----------QEKLNWAF 144
Query: 82 ---DKNLDGTITRTPLMQVV 98
D N DG IT+ ++ ++
Sbjct: 145 NLYDINKDGYITKEEMLDIM 164
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 29.6 bits (66), Expect = 0.20
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 40 DKNLDGTITRTPLMQLIDQ-LRPGGRLIIPVGPEGSAQNL-----EQIDKNLDGTIT 90
D N DG IT+ ++ ++ GR P+ E + +++D+N DG +T
Sbjct: 175 DINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVT 231
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 29.4 bits (66), Expect = 0.22
Identities = 9/57 (15%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 40 DKNLDGTITRTPLMQLIDQL-RPGGRLIIPVGPEGSAQNL-----EQIDKNLDGTIT 90
D + +G I++ +++++ + + ++ E + + Q+D N DG ++
Sbjct: 109 DLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLS 165
Score = 25.2 bits (55), Expect = 7.2
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 19/81 (23%)
Query: 27 VGPEGSAQSL-----EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI 81
P G A D N DGTI + + G Q L+
Sbjct: 55 FFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKL----------EQKLKWA 104
Query: 82 ----DKNLDGTITRTPLMQVV 98
D + +G I++ ++++V
Sbjct: 105 FSMYDLDGNGYISKAEMLEIV 125
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 29.4 bits (66), Expect = 0.22
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 9/62 (14%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRL--------IIPVGPEGSAQNL-EQIDKNLDGTI 89
D N DG I I ++ + L + D+N D +
Sbjct: 22 YDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQV 81
Query: 90 TR 91
T+
Sbjct: 82 TK 83
Score = 27.9 bits (62), Expect = 0.88
Identities = 5/53 (9%), Positives = 12/53 (22%), Gaps = 8/53 (15%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITR 91
D + D I + + + + + +TR
Sbjct: 118 NDTSGDNIIDKHEYSTVYMSYG--------IPKSDCDAAFDTLSDGGKTMVTR 162
Score = 25.6 bits (56), Expect = 4.1
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 36 LEQIDKNLDGTITRT---PLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRT 92
+ D+N D +T+ + + G + + + D + D I +
Sbjct: 70 RKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKH 129
Query: 93 PLMQV 97
V
Sbjct: 130 EYSTV 134
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 29.7 bits (67), Expect = 0.23
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 37 EQIDKNLDGTITRTPLMQ-LIDQLRPGGRLIIPVGPEGSAQNL-EQIDKNLDGTI 89
IDKN DG + R L+ + E + D + +G I
Sbjct: 353 RHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYI 407
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 29.4 bits (66), Expect = 0.25
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 40 DKNLDGTITRTPLMQLIDQL-RPGGRLIIPVGPEGSAQNL----------EQIDKNLDGT 88
DK+ +G I R L+ +++ + + + V E + L +D+N DG
Sbjct: 105 DKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQ 164
Query: 89 IT 90
++
Sbjct: 165 LS 166
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 29.4 bits (66), Expect = 0.28
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 40 DKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTIT 90
D + +G+I + L+ + ++ E +ID N DG +T
Sbjct: 103 DADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELT 153
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 29.5 bits (66), Expect = 0.29
Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 13/78 (16%)
Query: 29 PEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGT 88
PEG Q K+ TR + D L + L+ ID DG
Sbjct: 246 PEGYIQERTIFFKDDGNYKTRAEVKFEGDTL-------------VNRIELKGIDFKEDGN 292
Query: 89 ITRTPLMQVVYVPLTDKQ 106
I L LT++Q
Sbjct: 293 ILGHKLEYNTRDQLTEEQ 310
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 29.1 bits (65), Expect = 0.31
Identities = 6/57 (10%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 37 EQIDKNLDGTIT----RTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTI 89
++ DKN G + + ++++ R+ G+
Sbjct: 55 KKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSE 111
Score = 25.6 bits (56), Expect = 4.8
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTI 89
ID + + + + + +L G E A +++DKN G++
Sbjct: 139 IDASGNMLVDEEEFKRAVPKLEAWG-----AKVEDPAALFKELDKNGTGSV 184
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 28.9 bits (65), Expect = 0.34
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 8/53 (15%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITR 91
+D N D I+R L + + + + ID N DG ++
Sbjct: 103 VDTNEDNNISRDEYGIFFGMLG--------LDKTMAPASFDAIDTNNDGLLSL 147
Score = 27.8 bits (62), Expect = 0.79
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 13/64 (20%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI---------DKNLDG 87
+ID + DG ITR + ++ + E + ++ +
Sbjct: 13 NRIDFDKDGAITRMDFESMAERFAKESEM----KAEHAKVLMDSLTGVWDNFLTAVAGGK 68
Query: 88 TITR 91
I
Sbjct: 69 GIDE 72
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 28.4 bits (64), Expect = 0.36
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNL-EQIDKNLDGTI 89
ID + G + L + + + R + E ++L + D + DG I
Sbjct: 50 IDNDQSGYLDGDELKYFLQKFQSDAREL----TESETKSLMDAADNDGDGKI 97
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 28.7 bits (64), Expect = 0.40
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 5/66 (7%)
Query: 36 LEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTITR 91
++Q + DG I L ++ L+ S + + D + G I
Sbjct: 64 VDQYGQRDDGKIGIVELAHVLPT-EENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIET 122
Query: 92 TPLMQV 97
L
Sbjct: 123 EELKNF 128
Score = 27.1 bits (60), Expect = 1.5
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 39 IDKNLDGTITRTPL---MQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTI 89
D + G + L +Q + Q R L + ++Q + DG I
Sbjct: 25 FDADGSGYLEGKELQNLIQELLQARKKAGLEL---SPEMKTFVDQYGQRDDGKI 75
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 28.7 bits (64), Expect = 0.41
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 40 DKNLDGTITRTPLMQLIDQL-RPGGRLIIPVGPEGSAQN-----LEQIDKNLDGTIT 90
D N DG IT ++ ++ + + G ++ E + + + +DKN DG IT
Sbjct: 109 DLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYIT 165
Score = 24.8 bits (54), Expect = 9.1
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 13/77 (16%)
Query: 28 GPEGSAQSL-----EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI- 81
P GS + DK+ +G I + ++ G E ++
Sbjct: 56 FPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGT-------LEEKLSWAFELY 108
Query: 82 DKNLDGTITRTPLMQVV 98
D N DG IT ++ +V
Sbjct: 109 DLNHDGYITFDEMLTIV 125
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 27.1 bits (61), Expect = 0.42
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 14/59 (23%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQ----IDKNLDGTITR 91
++ID N DG ++ + + + + Q L+ ID + +G I +
Sbjct: 7 KEIDVNGDGAVSYEEVKAFVSKK----------RAIKNEQLLQLIFKSIDADGNGEIDQ 55
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 27.8 bits (62), Expect = 0.45
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 33 AQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTI 89
Q E D TI+R + + R + + E + ++ N G +
Sbjct: 27 TQEFENFDTMKTNTISREEFRAICN------RRVQILTDEQFDRLWNEMPVNAKGRL 77
Score = 25.5 bits (56), Expect = 3.4
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 79 EQIDKNLDGTITRTPL---MQVVYVPLTDKQ 106
E D TI+R LTD+Q
Sbjct: 31 ENFDTMKTNTISREEFRAICNRRVQILTDEQ 61
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 28.7 bits (65), Expect = 0.48
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 1 MKSRSFWGNQSKLIDQLRPGGRLIIPVGPE 30
+ + F + L++Q++PG +I PE
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPE 32
Score = 26.0 bits (58), Expect = 4.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 54 QLIDQLRPGGRLIIPVGPE 72
L++Q++PG +I PE
Sbjct: 14 ALVEQMQPGSAALIFAAPE 32
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 28.3 bits (63), Expect = 0.48
Identities = 5/53 (9%), Positives = 10/53 (18%), Gaps = 8/53 (15%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITR 91
+D + DG + + + I T
Sbjct: 114 MDVSGDGIVDLEEFQNYCKNFQ--------LQCADVPAVYNVITDGGKVTFDL 158
Score = 26.0 bits (57), Expect = 2.9
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 39 IDKNLDGTITRTPLMQLIDQLR--PGGRLIIPVGPEGSA-------QNLEQIDKNLDGTI 89
+D N DG+I ++ + + G L A + D N D +
Sbjct: 18 LDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVV 77
Query: 90 TR 91
+
Sbjct: 78 SW 79
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 28.4 bits (63), Expect = 0.49
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI--------DKNLDGTIT 90
D + +GTI++ +++++ + E+ KN D +T
Sbjct: 116 YDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLT 175
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 28.2 bits (63), Expect = 0.61
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 8/54 (14%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNL-EQIDKNLDGTI 89
+ G + L Q++ + + PEG + L ++ + G +
Sbjct: 129 LSSAVSGSGKFSFQDLKQVLAKY--ADTI-----PEGPLKKLFVMVENDTKGRM 175
Score = 25.9 bits (57), Expect = 4.5
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 15/55 (27%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTI 89
ID N +GT++R + +L + + D++ +
Sbjct: 197 IDTNSNGTLSRKEFREHFVRL-----------GFDKKSVQDALFRYADEDESDDV 240
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 27.9 bits (63), Expect = 0.64
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNL-EQIDKNLDGTI 89
++ID N DG ++ + + + E Q + + ID + +G I
Sbjct: 7 KEIDVNGDGAVSYEEVKAFVSKK--RAIK-----NEQLLQLIFKSIDADGNGEI 53
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 27.5 bits (62), Expect = 0.69
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 11/55 (20%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTI 89
ID++ G I L + P R + + + DK+ DG I
Sbjct: 50 IDQDKSGFIEEDELKLFLQNFSPSARAL-------TDAETKAFLADGDKDGDGMI 97
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 28.0 bits (63), Expect = 0.72
Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTI 89
++D N +G+++ + ++ + + + L+ +D N G I
Sbjct: 46 YKLDTNHNGSLSHREIYTVLASVG--------IKKWDINRILQALDINDRGNI 90
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 27.5 bits (62), Expect = 0.73
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 11/55 (20%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTI 89
ID + G I L ++ GR + + + DK+ DG I
Sbjct: 51 IDADASGFIEEEELKFVLKSFAADGRDL-------TDAETKAFLKAADKDGDGKI 98
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 27.8 bits (62), Expect = 0.77
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 12 KLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITR 49
+L GGRL+ S Q L + K GTI+
Sbjct: 112 AAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISS 149
Score = 27.8 bits (62), Expect = 0.78
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 52 LMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITR 91
+L GGRL+ S Q L + K GTI+
Sbjct: 110 FAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISS 149
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 28.0 bits (63), Expect = 0.78
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTI 89
+D++ G IT +QL+ G P L+QID + G I
Sbjct: 59 LVLDEDGKGYIT-------KEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKI 104
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 27.2 bits (61), Expect = 0.79
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 11/55 (20%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTI 89
ID++ G I L + G R + + + D + DG I
Sbjct: 51 IDQDKSGFIEEDELKLFLQVFSAGARAL-------TDAETKAFLKAGDSDGDGAI 98
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 27.9 bits (62), Expect = 0.83
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 59 LRPGGRLIIPVG-PEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQH 107
L PGG+ ++ + E + + + L G R ++ V ++P + Q
Sbjct: 180 LEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQE 229
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 28.0 bits (63), Expect = 0.85
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 11/54 (20%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQ-IDKNLDGTI 89
+ + I + Q +D G +AQ+ E + DG
Sbjct: 389 IHLMGDESACIAYIRITQYLDAG----------GIPRTAQSEETRVWHRRDGKW 432
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 27.2 bits (60), Expect = 0.89
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 14/68 (20%)
Query: 36 LEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQN------------LEQIDK 83
D N DG + L L + ++ P E + ++ +D
Sbjct: 26 FILHDINSDGVLDEQELEALF--TKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDT 83
Query: 84 NLDGTITR 91
N D +T
Sbjct: 84 NQDRLVTL 91
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 27.5 bits (61), Expect = 0.96
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 43 LDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITR 91
+ G ++ +L + L PG R++ S L Q+ G + R
Sbjct: 128 IGGGGSQALYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLR 176
Score = 26.7 bits (59), Expect = 2.1
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 12 KLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITR 49
+L + L PG R++ S L Q+ G + R
Sbjct: 139 RLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLR 176
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 27.4 bits (61), Expect = 1.1
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 52 LMQLIDQLRPGGRLIIPVGPEGSAQNLEQ 80
+ + L+ GGR + G +G+ + + +
Sbjct: 137 IASIHQALKSGGRFVAEFGGKGNIKYILE 165
Score = 27.0 bits (60), Expect = 1.6
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 13 LIDQLRPGGRLIIPVGPEGSAQSLEQ 38
+ L+ GGR + G +G+ + + +
Sbjct: 140 IHQALKSGGRFVAEFGGKGNIKYILE 165
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 27.5 bits (61), Expect = 1.2
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 17 LRPGGRLIIPVGPEGSAQSLEQI 39
L GG+++ + ++
Sbjct: 135 LNKGGKIVFADTIFADQDAYDKT 157
Score = 27.5 bits (61), Expect = 1.2
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 59 LRPGGRLIIPVGPEGSAQNLEQI 81
L GG+++ ++
Sbjct: 135 LNKGGKIVFADTIFADQDAYDKT 157
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 26.9 bits (59), Expect = 1.5
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 10/59 (16%)
Query: 40 DKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI--------DKNLDGTIT 90
D + + + L I + P S L I DKN DG I
Sbjct: 78 DYDGNNLLDGLELSTAITHVHKEEGS--EQAPLMSEDELINIIDGVLRDDDKNNDGYID 134
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 27.2 bits (61), Expect = 1.6
Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 33 AQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPE 72
+Q ++ D + L+ L+ G +I
Sbjct: 194 SQVTQKYFAIFD-AVNSQNAAALVPSLKANGHIICIQDRI 232
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 26.8 bits (60), Expect = 1.6
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTI 89
+D + GT++ ++ G + I G + ++ Q+ D N G I
Sbjct: 64 IALDVDNSGTLS-------SQEILDGLKKI---GYQKIPPDIHQVLRDIDSNASGQI 110
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A
1rjv_A 1rk9_A 1g33_A
Length = 109
Score = 26.5 bits (59), Expect = 1.6
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNL-EQIDKNLDGTI 89
+DK+ G I L ++ R + + L DK+ DG I
Sbjct: 50 LDKDKSGFIEEDELGSILKGFSSDARDL----SAKETKTLMAAGDKDGDGKI 97
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 26.1 bits (58), Expect = 1.8
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTI 89
+D + G I L + + G R + + L D + DG I
Sbjct: 50 LDNDQSGFIEEDELKYFLQRFESGAR---VLTASETKTFLAAADHDGDGKI 97
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
transferase; 2.00A {Thermus thermophilus HB8} SCOP:
b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Length = 228
Score = 26.7 bits (60), Expect = 2.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 8 GNQSKLIDQLRPGGRLIIPVGPEG 31
G +++ + L P L + VGPEG
Sbjct: 161 GATARVREVLDPEKPLALAVGPEG 184
Score = 26.4 bits (59), Expect = 2.4
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 21 GRLIIP-VGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEG 73
GR+++P V P +++ Q+ + L + T ++ + L P L + VGPEG
Sbjct: 133 GRVVVPEVLPPIPLKAVPQVAQGLVAHVGATA--RVREVLDPEKPLALAVGPEG 184
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 26.7 bits (59), Expect = 2.3
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 17 LRPGGRLIIPVGPEGS 32
L+ GG LI+ + S
Sbjct: 129 LKKGGYLIVGIVDRES 144
Score = 26.7 bits (59), Expect = 2.3
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 59 LRPGGRLIIPVGPEGS 74
L+ GG LI+ + S
Sbjct: 129 LKKGGYLIVGIVDRES 144
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 26.7 bits (58), Expect = 2.6
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 1 MKSRSFWGNQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLR 60
+ + S K + L +I + GS+Q ++ K T+ + L
Sbjct: 188 LNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKG--------LS 239
Query: 61 PGGRLIIPVGPEGSAQNL 78
G +IIPV G +L
Sbjct: 240 SDGSVIIPVDMSGKFLDL 257
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 26.4 bits (58), Expect = 2.7
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 11 SKLIDQLRPGGRLII---PVGPEGS--AQSLEQIDKNLD 44
SK ++ L GG + + G G + + + K +D
Sbjct: 123 SKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVD 161
Score = 26.0 bits (57), Expect = 3.3
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 48 TRTPLMQLIDQLRPGGRLII---PVGPEGS--AQNLEQIDKNLD 86
T L + ++ L GG + + G G + + + K +D
Sbjct: 118 TIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVD 161
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis
semifasciata} SCOP: a.39.1.4
Length = 109
Score = 25.6 bits (57), Expect = 2.7
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 11/55 (20%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTI 89
+DK+ G I L ++ GR + + + + D + DG I
Sbjct: 50 LDKDQSGFIEEEELKGVLKGFSAHGRDL-------NDTETKALLAAGDSDHDGKI 97
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 25.9 bits (58), Expect = 2.7
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTI 89
ID+N DG I + L ++ + G + + LE + G I
Sbjct: 16 IDQNRDGFIDKEDLHDMLASM----------GKNPTDEYLEGMMSEAPGPI 56
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 26.4 bits (58), Expect = 2.9
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 11/52 (21%)
Query: 30 EGSAQSLEQIDKNLDGTITRTPLMQLIDQ-----------LRPGGRLIIPVG 70
E A+ L + + ++ ++ L P G LI V
Sbjct: 102 EAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD 153
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 26.3 bits (58), Expect = 3.0
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 36 LEQIDKNLDGTITRTPLMQLIDQLRP----GGRLIIPVGPEGSAQNLEQI-------DKN 84
+E + + ++++ RP P PE ++ D +
Sbjct: 67 IESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLD 126
Query: 85 LDGTITRTPLMQVVY----VPLTDKQHQ 108
DG I+R ++QV+ V +T++Q +
Sbjct: 127 RDGKISRHEMLQVLRLMVGVQVTEEQLE 154
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 26.0 bits (57), Expect = 3.0
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 17 LRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRT 50
+ PGG + + + +Q D + + RT
Sbjct: 136 VAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRT 169
Score = 25.3 bits (55), Expect = 5.9
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 59 LRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRT 92
+ PGG + + + +Q D + + RT
Sbjct: 136 VAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRT 169
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 26.3 bits (58), Expect = 3.0
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTI 89
+D++ GT+ LM PGG I + P+ + + + D + +G I
Sbjct: 58 MGVDRDRSGTLEINELMMG---QFPGG---IRLSPQTALRMMRIFDTDFNGHI 104
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 26.2 bits (58), Expect = 3.2
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 14/85 (16%)
Query: 9 NQSKLIDQLRPGGRLIIPVGPEGSA---QSLEQIDKNLDGTITRTPLMQLIDQLRPGGRL 65
+++LR + G G + Q+D++ ++ Q + +L G L
Sbjct: 16 AVDATMEKLR---AQCLSRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKL--GLVL 70
Query: 66 IIPVGPEGSAQNL-EQIDKNLDGTI 89
+ A+ + + D+N GT+
Sbjct: 71 -----DQAEAEGVCRKWDRNGSGTL 90
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 25.9 bits (57), Expect = 3.6
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 14/55 (25%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTI 89
+DK+ +G IT G S+++ E+ D + G +
Sbjct: 118 VDKDQNGAITLDEWKAYTKAA----------GIIQSSEDCEETFRVCDIDESGQL 162
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 25.6 bits (57), Expect = 3.8
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 14/57 (24%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQ----IDKNLDGTI 89
ID + G IT ++L+ G + + G + D + GTI
Sbjct: 34 NMIDADKSGQIT-------FEELKAGLKRV---GANLKESEILDLMQAADVDNSGTI 80
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand,
acetylation, calcium, metal binding protein; 1.95A
{Gallus gallus} PDB: 2kqy_A
Length = 109
Score = 25.3 bits (56), Expect = 4.1
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 11/55 (20%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTI 89
+D++ G I L + R++ ++ + D + DG I
Sbjct: 51 LDQDKSGFIEEEELQLFLKNFSSSARVL-------TSAETKAFLAAGDTDGDGKI 98
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 25.5 bits (56), Expect = 4.3
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 13/55 (23%)
Query: 30 EGSAQSLEQIDKNLDGTITRTPLMQLIDQ-------------LRPGGRLIIPVGP 71
G + + + D ++ +M + + L GR +I G
Sbjct: 95 VGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA 149
Score = 25.1 bits (55), Expect = 7.0
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 17 LRPGGRLIIPVGP 29
L GR +I G
Sbjct: 137 LGADGRAVIGFGA 149
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix,
lyase; 1.80A {Bacillus SP} PDB: 2inv_A*
Length = 410
Score = 26.1 bits (56), Expect = 4.3
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 25 IPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVG 70
I PE +AQ I ++ I Q RPG +IIP G
Sbjct: 22 IKAHPEVTAQ--SDIGAVINDIIADIKQRQTSPDARPGAAIIIPPG 65
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 25.6 bits (56), Expect = 4.3
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 11 SKLIDQLRPGGRLII---PVGPEGS--AQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRL 65
K++D+L GGRL I G ++ + LD + L Q ++Q+ L
Sbjct: 119 EKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFL 178
Query: 66 II 67
++
Sbjct: 179 VM 180
Score = 25.2 bits (55), Expect = 6.3
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 TRTPLMQLIDQLRPGGRLIIPV--GPEGSAQNLEQIDK 83
T + +++D+L GGRL I + G +G + + +
Sbjct: 114 TLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLE 151
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 25.6 bits (56), Expect = 4.4
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 52 LMQLIDQLRPGGRLII 67
++ L+PGG I+
Sbjct: 114 YPKVYQGLKPGGVFIL 129
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 25.7 bits (57), Expect = 4.6
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 4/24 (16%)
Query: 47 ITRTPLMQLIDQ----LRPGGRLI 66
+ L + L PGGR +
Sbjct: 192 LYAELHAALAPRYREALVPGGRAL 215
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 24.8 bits (55), Expect = 4.6
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 40 DKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQ----IDKNLDGTI 89
D N DG I+ + L + L G SA +++ ID + DG I
Sbjct: 13 DTNGDGKISLSELTDALRTL--G---------STSADEVQRMMAEIDTDGDGFI 55
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics,
midwest center for structu genomics, hydrolase; HET:
MSE; 2.15A {Corynebacterium diphtheriae}
Length = 135
Score = 25.4 bits (56), Expect = 5.0
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 11 SKLIDQLRPGGRLIIPVGPEG---SAQSLEQIDKNLDGTITRTPLMQLIDQLR 60
L+ + R VG E S E++ K+ + P+ I++LR
Sbjct: 87 PALLSDINGPKR----VGFEADYLSVSQCEELRKSAGSDVELIPVTGAIEKLR 135
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 25.6 bits (56), Expect = 5.5
Identities = 10/69 (14%), Positives = 18/69 (26%), Gaps = 20/69 (28%)
Query: 52 LMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW-P 110
+ ++ L PGG L+ G+ + +V +
Sbjct: 137 IDNMVKMLAPGGHLVF-------------------GSARDATCRRWGHVAGAETVITILT 177
Query: 111 GRSHEVCRF 119
EV R
Sbjct: 178 EALTEVERV 186
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor
methylation; HET: SAH; 2.00A {Salmonella typhimurium}
SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Length = 274
Score = 25.6 bits (57), Expect = 5.6
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 11/48 (22%)
Query: 52 LMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVY 99
L + + L+P G L G ++N + + + Q VY
Sbjct: 235 LRRFVPLLKPDGLLFA-----GHSENFSNLVREF------SLRGQTVY 271
Score = 25.2 bits (56), Expect = 5.9
Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 11 SKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNL 43
+ + L+P G L G +++ + +
Sbjct: 236 RRFVPLLKPDGLLFA-----GHSENFSNLVREF 263
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 25.7 bits (57), Expect = 5.7
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 1 MKSRSFWGNQSKLIDQLRPGGRLIIPVGPE 30
MKS+ F N+ +L++ L I+ G
Sbjct: 1 MKSKFFAQNRERLVNTLPDESITILFAGQA 30
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW
YORK SGX research CEN structural genomics, nysgxrc; HET:
MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2
c.116.1.5 PDB: 1nxz_A
Length = 257
Score = 25.3 bits (56), Expect = 5.7
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 13/61 (21%)
Query: 21 GRLIIP-VGPEGSAQSLEQIDKNLDGTI-------TRTPLMQLIDQLRPGGRLIIPVGPE 72
GR I+P + P L+ DG + + L P G + + +G E
Sbjct: 145 GRNIVPEIRP---LMKLQDWCAENDGALKLNLHPRAHYSIKTL--PTIPAGGVRLLIGSE 199
Query: 73 G 73
G
Sbjct: 200 G 200
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 25.2 bits (56), Expect = 5.8
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 47 ITRTPLMQLIDQ----LRPGGRLI 66
I L+ LI Q L G++I
Sbjct: 133 ILAEILLDLIPQLDSHLNEDGQVI 156
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 25.3 bits (55), Expect = 6.2
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 14/56 (25%)
Query: 38 QIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTI 89
+ D N +G I L +++++L G + L+++ + T
Sbjct: 56 EFDLNGNGDIDIMSLKRMLEKL----------GVPKTHLELKRLIREVSSGSEETF 101
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 25.2 bits (56), Expect = 6.3
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 39 IDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTI 89
ID+N DG I + L + + GRL + L+ + K G I
Sbjct: 34 IDQNADGIIDKDDLRETFAAM---GRL------NVKNEELDAMIKEASGPI 75
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase;
S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A
{Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Length = 285
Score = 25.5 bits (57), Expect = 6.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 52 LMQLIDQLRPGGRLII 67
L Q + L PGGRL++
Sbjct: 216 LEQAAEVLAPGGRLVV 231
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 25.1 bits (55), Expect = 6.4
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 17 LRPGGRLII----PVGPEGSAQSLEQIDKNLDGTITRTP 51
L+ GG+L++ + ++K D + R
Sbjct: 130 LKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAW 168
Score = 24.8 bits (54), Expect = 8.7
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 59 LRPGGRLII----PVGPEGSAQNLEQIDKNLDGTITRTP 93
L+ GG+L++ + ++K D + R
Sbjct: 130 LKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAW 168
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 25.4 bits (56), Expect = 6.9
Identities = 12/53 (22%), Positives = 18/53 (33%)
Query: 26 PVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNL 78
P+ E +A L T T ++ D + P GR + P L
Sbjct: 227 PLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDPSAFDIML 279
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 25.1 bits (55), Expect = 7.0
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 17 LRPGGRLII 25
LRPGG L++
Sbjct: 122 LRPGGALVV 130
Score = 25.1 bits (55), Expect = 7.0
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 59 LRPGGRLII 67
LRPGG L++
Sbjct: 122 LRPGGALVV 130
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 25.2 bits (56), Expect = 7.4
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 12/71 (16%)
Query: 8 GNQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTP--------LMQLIDQL 59
+ ID L+ G ++ K+ L +L+ +
Sbjct: 226 DVGIQSIDCLKETGCIVSVPTITAGRVIEVAKQKHRRAFGLLKQFNIEELHYLGKLVSE- 284
Query: 60 RPGGRLIIPVG 70
+L I +
Sbjct: 285 ---DKLRIEIS 292
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 25.2 bits (55), Expect = 7.5
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 10/48 (20%)
Query: 30 EGSAQSLEQIDKNLDGTITRTPLMQLIDQ----------LRPGGRLII 67
+ + SL D + D L L L+PGG + +
Sbjct: 93 QANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITV 140
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 24.0 bits (53), Expect = 8.2
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNL-EQIDKNLDGTI 89
+ ID + GTIT L + ++ G L E ++L + D + GTI
Sbjct: 30 KMIDTDNSGTITFDELKDGLKRV--GSEL-----MESEIKDLMDAADIDKSGTI 76
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 24.9 bits (55), Expect = 8.6
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 9 NQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLD--GTITRTPLMQLIDQLRPGGRL 65
++ G ++ +G G+ + K G T L+ G L
Sbjct: 228 VLDASFSAVKRFGHVVSCLGW-GTHKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEML 285
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4;
2.25A {Escherichia coli}
Length = 347
Score = 24.8 bits (55), Expect = 8.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 52 LMQLIDQLRPGGRLII 67
L ++ L PGGRL I
Sbjct: 257 LKSSLNVLAPGGRLSI 272
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 24.9 bits (54), Expect = 8.8
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 17 LRPGGRLII 25
L+PGG L+
Sbjct: 131 LKPGGALLE 139
Score = 24.9 bits (54), Expect = 8.8
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 59 LRPGGRLII 67
L+PGG L+
Sbjct: 131 LKPGGALLE 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.426
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,890,039
Number of extensions: 103204
Number of successful extensions: 832
Number of sequences better than 10.0: 1
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 173
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)