RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5587
(126 letters)
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 73.0 bits (178), Expect = 2e-17
Identities = 37/55 (67%), Positives = 42/55 (76%)
Query: 56 IDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP 110
IDQL+PGGRLI+PVGP G Q LEQ DK DG+I PLM V+YVPLTDK+ QW
Sbjct: 168 IDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWS 222
>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 223
Score = 62.9 bits (152), Expect = 9e-14
Identities = 27/49 (55%), Positives = 38/49 (77%)
Query: 54 QLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPL 102
+LI+QL GGRLI+PVGP+G +Q ++Q DK+ +G + T LM V+YVPL
Sbjct: 175 ELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 223
Score = 51.0 bits (121), Expect = 2e-09
Identities = 22/42 (52%), Positives = 32/42 (76%)
Query: 12 KLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLM 53
+LI+QL GGRLI+PVGP+G +Q ++Q DK+ +G + T LM
Sbjct: 175 ELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLM 216
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl
O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 54.6 bits (130), Expect = 1e-10
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 55 LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPL 102
QL+ GGR+I+P+ + S + + K D + ++ ++
Sbjct: 161 WFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITA 208
Score = 45.4 bits (106), Expect = 2e-07
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 12 KLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLM 53
QL+ GGR+I+P+ + S + + K D + +
Sbjct: 160 TWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKL 201
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 215
Score = 53.3 bits (127), Expect = 3e-10
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 55 LIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQ 106
LI+QL+ GG+LIIPVG Q L ++ K DG I V +VPL +
Sbjct: 162 LIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDG-IKIKNHGGVAFVPLIGEY 212
Score = 42.5 bits (99), Expect = 2e-06
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 12 KLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRT 50
LI+QL+ GG+LIIPVG Q L ++ K DG +
Sbjct: 161 PLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDGIKIKN 199
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 224
Score = 50.2 bits (119), Expect = 4e-09
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 56 IDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPGRSHE 115
+QL+ GG +I+P+G Q L ++ K + + L +V++ + +
Sbjct: 152 YEQLKEGGIMILPIGVGRV-QKLYKVIKK-GNSPSLENLGEVMFGRIGGLYGFYDDYDDI 209
Query: 116 VCRFK 120
R
Sbjct: 210 EFRVN 214
Score = 39.4 bits (91), Expect = 3e-05
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 14 IDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLM 53
+QL+ GG +I+P+G Q L ++ K + + L
Sbjct: 152 YEQLKEGGIMILPIGVGRV-QKLYKVIKK-GNSPSLENLG 189
>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId:
8010]}
Length = 107
Score = 33.4 bits (76), Expect = 0.002
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTIT 90
ID++ G I L + P R + + L DK+ DG I
Sbjct: 47 YVIDQDKSGFIEEDELKLFLQNFSPSAR---ALTDAETKAFLADGDKDGDGMIG 97
>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis
semifasciata) [TaxId: 30493]}
Length = 109
Score = 31.5 bits (71), Expect = 0.008
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTIT 90
E +DK+ G I L ++ GR + + L D + DG I
Sbjct: 48 EILDKDQSGFIEEEELKGVLKGFSAHGR---DLNDTETKALLAAGDSDHDGKIG 98
>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId:
8010]}
Length = 109
Score = 31.0 bits (70), Expect = 0.016
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTIT 90
+ ID + G I L ++ GR + + L+ DK+ DG I
Sbjct: 48 KAIDADASGFIEEEELKFVLKSFAADGR---DLTDAETKAFLKAADKDGDGKIG 98
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 176
Score = 30.4 bits (67), Expect = 0.039
Identities = 8/88 (9%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLR---------PGGRLIIPVGPEGSAQNLEQIDKNLDG 87
++ D + +G + R + + + + ++ DG
Sbjct: 14 DRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDG 73
Query: 88 TITRTPLMQVVYVPLTDKQHQWPGRSHE 115
++T ++V + ++ R
Sbjct: 74 SLTEEQFIRVTENLIFEQGEASFNRVLG 101
>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein
{Sandworm (Nereis diversicolor) [TaxId: 126592]}
Length = 174
Score = 29.3 bits (64), Expect = 0.081
Identities = 10/90 (11%), Positives = 23/90 (25%), Gaps = 5/90 (5%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI-----DKNLDGTITR 91
+ID + DG ITR + ++ + I
Sbjct: 13 NRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDE 72
Query: 92 TPLMQVVYVPLTDKQHQWPGRSHEVCRFKV 121
T + + + + + + F+
Sbjct: 73 TTFINSMKEMVKNPEAKSVVEGPLPLFFRA 102
>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus
(Branchiostoma lanceolatum) [TaxId: 7740]}
Length = 68
Score = 27.5 bits (61), Expect = 0.14
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTIT 90
+ D N DG I + ++ G P+ + +++ D++ +G I
Sbjct: 9 KVFDANGDGVIDFD---EFKFIMQKVG--EEPLTDAEVEEAMKEADEDGNGVID 57
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 67
Score = 27.2 bits (60), Expect = 0.19
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTIT 90
E+ DKN DG ++ ++ E + E+ID + +G +
Sbjct: 8 EKFDKNKDGKLSLDEFREVALAFS------PYFTQEDIVKFFEEIDVDGNGELN 55
>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB
{Human (Homo sapiens) [TaxId: 9606]}
Length = 180
Score = 27.8 bits (61), Expect = 0.27
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 38 QIDKNLDGTITRTPLMQLIDQL--RPGGRLIIPVGPEGSAQN-LEQIDKNLDGTITRTPL 94
D + DGT+ R L +L++ L + + N LE+ D + DGTI +
Sbjct: 103 IFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEF 162
Query: 95 MQVV 98
V+
Sbjct: 163 QHVI 166
>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein
{Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}
Length = 185
Score = 27.7 bits (60), Expect = 0.37
Identities = 9/89 (10%), Positives = 25/89 (28%), Gaps = 9/89 (10%)
Query: 40 DKNLDGTITRTPLMQLIDQLRPGGR---------LIIPVGPEGSAQNLEQIDKNLDGTIT 90
D N DG+I ++ + + + + + + D N D ++
Sbjct: 19 DMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVS 78
Query: 91 RTPLMQVVYVPLTDKQHQWPGRSHEVCRF 119
+ + + + + R
Sbjct: 79 WEEYLAMWEKTIATCKSVADLPAWCQNRI 107
Score = 24.2 bits (51), Expect = 5.3
Identities = 5/55 (9%), Positives = 11/55 (20%), Gaps = 8/55 (14%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITR 91
+ +D + DG + + + I T
Sbjct: 112 KGMDVSGDGIVDLEEFQNYCKNFQ--------LQCADVPAVYNVITDGGKVTFDL 158
>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli
[TaxId: 562]}
Length = 176
Score = 26.7 bits (58), Expect = 0.69
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 9 NQSKLIDQLRPGGRLIIPVGPE 30
+ L++Q++PG +I PE
Sbjct: 11 RRQALVEQMQPGSAALIFAAPE 32
Score = 24.4 bits (52), Expect = 4.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 54 QLIDQLRPGGRLIIPVGPE 72
L++Q++PG +I PE
Sbjct: 14 ALVEQMQPGSAALIFAAPE 32
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 26.5 bits (57), Expect = 0.88
Identities = 7/65 (10%), Positives = 24/65 (36%), Gaps = 13/65 (20%)
Query: 38 QIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQNLEQI----DKNLDGTITRTP 93
D + G +++ + ++++ PE + + E D + +++
Sbjct: 261 FADFDKSGQLSKEEVQKVLEDAH---------IPESARKKFEHQFSVVDVDDSKSLSYQE 311
Query: 94 LMQVV 98
+ +V
Sbjct: 312 FVMLV 316
Score = 26.1 bits (56), Expect = 1.3
Identities = 10/96 (10%), Positives = 23/96 (23%), Gaps = 7/96 (7%)
Query: 9 NQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLIIP 68
Q + + + + L++ ++ G + P
Sbjct: 52 EQKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRLRP 111
Query: 69 VGPEGSAQNLE-------QIDKNLDGTITRTPLMQV 97
P S ++ + G + L QV
Sbjct: 112 SKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQV 147
>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 194
Score = 26.1 bits (56), Expect = 1.1
Identities = 7/44 (15%), Positives = 19/44 (43%)
Query: 6 FWGNQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITR 49
+ + L+ G + + + + A+SL + K++ G +
Sbjct: 136 LHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVET 179
Score = 24.6 bits (52), Expect = 3.4
Identities = 6/39 (15%), Positives = 19/39 (48%)
Query: 53 MQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITR 91
+ + L+ G + + + + A++L + K++ G +
Sbjct: 141 EEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVET 179
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 190
Score = 25.9 bits (56), Expect = 1.2
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 38 QIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSA------QNLEQIDKNLDGTITR 91
D N DG IT ++ ++ + ++ + + + + + +DKN DG IT
Sbjct: 107 LYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITL 166
Query: 92 TPLMQVV 98
+
Sbjct: 167 DEFREGS 173
>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 25.0 bits (54), Expect = 1.8
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 14/66 (21%)
Query: 37 EQIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQN------------LEQIDKN 84
D N DG + L L + ++ P E + ++ +D N
Sbjct: 23 ILHDINSDGVLDEQELEALFTKE--LEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTN 80
Query: 85 LDGTIT 90
D +T
Sbjct: 81 QDRLVT 86
>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica)
[TaxId: 5759]}
Length = 134
Score = 25.1 bits (53), Expect = 2.3
Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 79 EQIDKNLDGTITRTPL---MQVVYVPLTDKQHQWPGRSHEVCRFKVKFPC 125
++ID N DG ++ + + ++ Q +S +
Sbjct: 7 KEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQN 56
>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase
CheR, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 193
Score = 25.2 bits (54), Expect = 2.7
Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 11 SKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLD 44
+ + L+P G L G +++ + +
Sbjct: 155 RRFVPLLKPDGLLFA-----GHSENFSNLVREFS 183
Score = 24.4 bits (52), Expect = 3.9
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 11/48 (22%)
Query: 52 LMQLIDQLRPGGRLIIPVGPEGSAQNLEQIDKNLDGTITRTPLMQVVY 99
L + + L+P G L G ++N + + Q VY
Sbjct: 154 LRRFVPLLKPDGLLFA-----GHSENFSNLVREFS------LRGQTVY 190
>d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian clock
protein KaiA {Synechococcus elongatus [TaxId: 32046]}
Length = 135
Score = 24.7 bits (54), Expect = 2.7
Identities = 16/103 (15%), Positives = 27/103 (26%), Gaps = 27/103 (26%)
Query: 16 QLRPGGR--LIIPVGPEGSAQSLEQIDKNLDGTITR---TPLMQLIDQLRPGGRL--IIP 68
+ R L + E + + +D I ++ QL G + I
Sbjct: 22 RALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAANPSFRAVVQQLCFEGVVVPAIV 81
Query: 69 VGPEGSAQ--------------------NLEQIDKNLDGTITR 91
VG S LEQ+ +D +
Sbjct: 82 VGDRDSEDPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAE 124
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 24.9 bits (53), Expect = 2.9
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 8 GNQSKLIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLD--GTITRTPLMQLIDQLRPGG 63
G + L L+PGG ++I + E+I + T L L+ G
Sbjct: 118 GAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLG 175
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 367
Score = 25.2 bits (54), Expect = 3.2
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 46 TITRTP--LMQLIDQLRPGGRLIIP----VGPE 72
++RT L +I+ + RLI P VGPE
Sbjct: 333 ALSRTLGWLAHIIEYVEEQHRLIRPRALYVGPE 365
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 24.8 bits (53), Expect = 3.3
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 52 LMQLIDQLRPGGRLII 67
L ++I ++ GG++I
Sbjct: 114 LQKMIHSVKKGGKIIC 129
Score = 24.1 bits (51), Expect = 5.7
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 11 SKLIDQLRPGGRLII 25
K+I ++ GG++I
Sbjct: 115 QKMIHSVKKGGKIIC 129
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 24.4 bits (52), Expect = 4.1
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 38 QIDKNLDGTITRTPLMQLIDQLRPGGRLIIPVGPEGSAQN------LEQIDKNLDGTITR 91
D + DG ITR ++ ++D + + + E + +DKN DG +T
Sbjct: 104 LYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTL 163
Query: 92 TPLMQVV 98
+
Sbjct: 164 QEFQEGS 170
>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia
coli [TaxId: 562]}
Length = 168
Score = 24.5 bits (52), Expect = 4.1
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 24 IIPVGPEGSAQSLEQIDKNLDGTITRTPLMQLIDQLRPGGRLII---PVGPEGSAQNLEQ 80
+ + A L+ D L+ L L+ G + + P P S +
Sbjct: 79 VNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNL 138
Query: 81 IDKNL 85
I K
Sbjct: 139 IMKRR 143
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 23.9 bits (51), Expect = 4.1
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 33 AQSLEQIDKNLDGTITRTPLMQLIDQL 59
Q E D TI+R + ++
Sbjct: 23 TQEFENFDTMKTNTISREEFRAICNRR 49
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora,
subsp. carotovora [TaxId: 554]}
Length = 376
Score = 24.8 bits (53), Expect = 4.4
Identities = 3/27 (11%), Positives = 11/27 (40%)
Query: 44 DGTITRTPLMQLIDQLRPGGRLIIPVG 70
D + + + + ++ G + + G
Sbjct: 21 DSSTATSTIQKALNNCDQGKAVRLSAG 47
>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
{Soybean (Glycine max) [TaxId: 3847]}
Length = 182
Score = 24.2 bits (51), Expect = 5.3
Identities = 7/47 (14%), Positives = 13/47 (27%)
Query: 79 EQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPGRSHEVCRFKVKFPC 125
+ ID + GTIT L + ++ +
Sbjct: 17 KMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTI 63
>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Azotobacter vinelandii
[TaxId: 354]}
Length = 99
Score = 23.4 bits (50), Expect = 5.8
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 6 FWGNQSKLIDQLRPGGRLIIPVGPEGS 32
G + + L+ G L++ P G+
Sbjct: 71 QNGPLTSRLQHLKEGDELMVSRKPTGT 97
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase
D, MltD {Escherichia coli [TaxId: 562]}
Length = 48
Score = 22.3 bits (48), Expect = 7.8
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 12 KLIDQLRPGGRLIIPV 27
L+PG +L + V
Sbjct: 32 SDTANLQPGDKLTLFV 47
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 23.5 bits (49), Expect = 8.6
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 96 QVVYVPLTDKQHQW 109
VY LT +Q
Sbjct: 4 TNVYCNLTPEQAAM 17
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.426
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 468,257
Number of extensions: 20541
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 45
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.6 bits)