RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5588
(61 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 88.0 bits (219), Expect = 6e-24
Identities = 38/56 (67%), Positives = 43/56 (76%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
LIDQL+PGGRLI+PVGP G Q LEQ DK DG+I PLM V+YVPLTDK+ QW
Sbjct: 167 ALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQW 222
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 77.7 bits (192), Expect = 5e-20
Identities = 28/49 (57%), Positives = 38/49 (77%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPL 52
ELI+QL GGRLI+PVGP+G +Q ++Q DK+ +G + T LM V+YVPL
Sbjct: 179 ELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 227
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 75.7 bits (187), Expect = 4e-19
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP 60
LI+QL+ GG+LIIPVG Q L ++ K DG I V +VPL + + W
Sbjct: 174 PLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDG-IKIKNHGGVAFVPLIGE-YGWK 228
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 68.0 bits (167), Expect = 3e-16
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPL 52
L+D L G+LIIP+ + + Q L +I K +G I + L V +V L
Sbjct: 178 ILVDLLAENGKLIIPIEEDYT-QVLYEITKK-NGKIIKDRLFDVCFVSL 224
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 67.5 bits (165), Expect = 1e-15
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQ 56
QL+ GGR+I+P+ + S + + K D + ++ ++
Sbjct: 160 TWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNL 212
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 66.0 bits (162), Expect = 1e-15
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG 61
LI QL+ GG+L++PVG Q L +K D I V +VPL K + G
Sbjct: 162 PLIRQLKDGGKLLMPVGR--YLQRLVLAEKRGDE-IIIKDCGPVAFVPLVGK-EGFQG 215
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 60.3 bits (147), Expect = 2e-13
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP 60
+ +QL+ GG +I+P+G Q L ++ K + + L +V++ + + +
Sbjct: 150 KPYEQLKEGGIMILPIGVGRV-QKLYKVIKKGNS-PSLENLGEVMFGRIGGL-YGFY 203
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 56.8 bits (138), Expect = 4e-12
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLT 53
L+ QL GG L++PVG E Q L+++ + G + V +VPL
Sbjct: 159 ALMTQLDEGGILVLPVGEEH--QYLKRVRRR-GGEFIIDTVEAVRFVPLV 205
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 27.8 bits (62), Expect = 0.13
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQ 30
+ L+ GGR + G +G+ + + +
Sbjct: 139 SIHQALKSGGRFVAEFGGKGNIKYILE 165
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 27.8 bits (62), Expect = 0.14
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITR 41
+ +L GGRL+ S Q L + K GTI+
Sbjct: 109 VFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISS 149
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 27.1 bits (60), Expect = 0.28
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 9 LRPGGRLIIPVGPEGSAQSLEQI 31
L GG+++ + ++
Sbjct: 135 LNKGGKIVFADTIFADQDAYDKT 157
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 26.8 bits (59), Expect = 0.37
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 9 LRPGGRLIIPVG-PEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQH 57
L PGG+ ++ + E + + + L G R ++ V ++P + Q
Sbjct: 180 LEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQE 229
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 26.7 bits (59), Expect = 0.38
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITR 41
+ L + L PG R++ S L Q+ G + R
Sbjct: 136 LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLR 176
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 26.7 bits (59), Expect = 0.44
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 9 LRPGGRLIIPVGPEGS 24
L+ GG LI+ + S
Sbjct: 129 LKKGGYLIVGIVDRES 144
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 25.9 bits (57), Expect = 0.49
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 25 AQSLEQIDKNLDGTITRTPL---MQVVYVPLTDKQ 56
Q E D TI+R LTD+Q
Sbjct: 27 TQEFENFDTMKTNTISREEFRAICNRRVQILTDEQ 61
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor
methylation; HET: SAH; 2.00A {Salmonella typhimurium}
SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Length = 274
Score = 26.0 bits (58), Expect = 0.67
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 11/45 (24%)
Query: 5 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVY 49
+ L+P G L G +++ + + + Q VY
Sbjct: 238 FVPLLKPDGLLFA-----GHSENFSNLVREF------SLRGQTVY 271
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 25.7 bits (56), Expect = 0.79
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 4 ELIDQLRPGGRLII---PVGPEGS--AQSLEQIDKNLD 36
+ ++ L GG + + G G + + + K +D
Sbjct: 124 KAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVD 161
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold,
iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens}
PDB: 2yui_A
Length = 176
Score = 26.0 bits (56), Expect = 0.81
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 1 MVVELIDQLRPGGRLII--PVGPEGSAQSLEQIDKNLDGTITRTPLMQV---VYVPLTDK 55
++ E+ LRPGG L + PV S + L +T + L++V PLT +
Sbjct: 83 ILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREPLTPE 142
Query: 56 QHQ 58
+ Q
Sbjct: 143 EVQ 145
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 25.6 bits (56), Expect = 0.99
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRT 42
+ + PGG + + + +Q D + + RT
Sbjct: 131 SVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRT 169
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
transferase; 2.00A {Thermus thermophilus HB8} SCOP:
b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Length = 228
Score = 25.2 bits (56), Expect = 1.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 5 LIDQLRPGGRLIIPVGPEG 23
+ + L P L + VGPEG
Sbjct: 166 VREVLDPEKPLALAVGPEG 184
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 25.3 bits (56), Expect = 1.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 4 ELIDQLRPGGRLIIPVGPE 22
L++Q++PG +I PE
Sbjct: 14 ALVEQMQPGSAALIFAAPE 32
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 25.1 bits (55), Expect = 1.6
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 9 LRPGGRLII----PVGPEGSAQSLEQIDKNLDGTITRTP 43
L+ GG+L++ + ++K D + R
Sbjct: 130 LKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAW 168
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 24.8 bits (54), Expect = 1.6
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 9 LRPGGRLIIPVG 20
L P G LI V
Sbjct: 142 LVPDGLLIATVD 153
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 24.6 bits (53), Expect = 1.9
Identities = 3/43 (6%), Positives = 11/43 (25%)
Query: 9 LRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVP 51
P + + E++ + + + + P
Sbjct: 132 AAPDAHFLYVGPRLNVPEVPERLAAVGWDIVAEDHVSVLAHAP 174
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 24.7 bits (54), Expect = 2.0
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 9 LRPGGRLIIPVGP 21
L GR +I G
Sbjct: 137 LGADGRAVIGFGA 149
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function;
2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Length = 268
Score = 24.5 bits (54), Expect = 2.0
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 2 VVELIDQLRPGGRLIIPVGPEG 23
++ L G L+I GPEG
Sbjct: 188 FSAIVSSLPKGSSLLIVFGPEG 209
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 24.8 bits (54), Expect = 2.0
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 9 LRPGGRLII 17
LRPGG L++
Sbjct: 122 LRPGGALVV 130
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 2.1
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 27 SLEQIDKNLDGTITRTPLMQVVYVPL 52
+ EQ+ ++ T + P + V + L
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISL 370
Score = 24.6 bits (53), Expect = 2.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 16 IIPVGPEGSAQSLEQIDKNLDGTITRT 42
I+ GP G++ +N DGT R
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTGVRV 527
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 24.3 bits (53), Expect = 2.3
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 32 DKNLDGTITRTPLMQVVY----VPLTDKQHQ 58
D + DG I+R ++QV+ V +T++Q +
Sbjct: 124 DLDRDGKISRHEMLQVLRLMVGVQVTEEQLE 154
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 24.6 bits (54), Expect = 2.3
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 29 EQIDKNLDGTITRTPLMQV 47
++D N +G+++ + V
Sbjct: 46 YKLDTNHNGSLSHREIYTV 64
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase
fold, protein-cofactor product complex, structural
genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima}
SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Length = 301
Score = 24.4 bits (54), Expect = 2.7
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 7/25 (28%)
Query: 6 IDQLRPGGRL-IIPVGPEGSAQSLE 29
D L PGGR+ +I S SLE
Sbjct: 232 EDLLNPGGRIVVI------SFHSLE 250
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 24.5 bits (53), Expect = 2.8
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 4 ELIDQLRPGGRLII 17
++ L+PGG I+
Sbjct: 116 KVYQGLKPGGVFIL 129
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 24.4 bits (53), Expect = 2.9
Identities = 3/9 (33%), Positives = 6/9 (66%)
Query: 9 LRPGGRLII 17
L+ GR ++
Sbjct: 114 LKQDGRFLL 122
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 24.1 bits (53), Expect = 3.0
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 32 DKNLDGTITRTPLMQV----VYVPLTDKQHQ 58
D + DG I+ L QV V L D Q Q
Sbjct: 85 DMDKDGYISNGELFQVLKMMVGNNLKDTQLQ 115
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 24.1 bits (52), Expect = 3.2
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 4 ELIDQLRPGGRLII---PVGPEGS--AQSLEQIDKNLD 36
+++D+L GGRL I G ++ + LD
Sbjct: 120 KILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLD 157
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 24.0 bits (52), Expect = 3.3
Identities = 4/9 (44%), Positives = 6/9 (66%)
Query: 9 LRPGGRLII 17
L+ GG+ I
Sbjct: 138 LKSGGKTYI 146
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 24.1 bits (52), Expect = 3.4
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 9 LRPGGRLII 17
L+PGG L+
Sbjct: 131 LKPGGALLE 139
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 23.8 bits (52), Expect = 3.9
Identities = 4/22 (18%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 9 LRPGGRLII--PVGPEGSAQSL 28
GG +++ V + A +
Sbjct: 264 AGSGGVVLVIEAVAGDEHAGTG 285
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 24.0 bits (52), Expect = 4.0
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 9 LRPGGRLII 17
L PGG L+I
Sbjct: 142 LVPGGALVI 150
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II
DNA-(cytosine N4) methyltransferase, amino methylation,
selenomethionine; HET: SAH; 2.80A {Proteus vulgaris}
SCOP: c.66.1.11
Length = 323
Score = 24.0 bits (52), Expect = 4.0
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNL 35
+ +L+P G ++ G + N
Sbjct: 69 VVNKKLKPDGSFVVDFGGAYMKGVPARSIYNF 100
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase;
S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A
{Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Length = 285
Score = 23.6 bits (52), Expect = 4.8
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 7/25 (28%)
Query: 6 IDQLRPGGRL-IIPVGPEGSAQSLE 29
+ L PGGRL +I + SLE
Sbjct: 220 AEVLAPGGRLVVI------AFHSLE 238
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4;
2.25A {Escherichia coli}
Length = 347
Score = 23.7 bits (52), Expect = 5.2
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 7/25 (28%)
Query: 6 IDQLRPGGRL-IIPVGPEGSAQSLE 29
++ L PGGRL II S SLE
Sbjct: 261 LNVLAPGGRLSII------SFHSLE 279
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 23.5 bits (51), Expect = 5.8
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 9 LRPGGRLII 17
L+ GR+II
Sbjct: 102 LKDDGRVII 110
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 23.5 bits (51), Expect = 6.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 4 ELIDQLRPGGRLIIP-VGPEGSAQSLEQI-DKNLDGTITR 41
+ D+L+PGGR+I+ + E +++E + D D IT
Sbjct: 119 IIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNITE 158
>1z3i_X Similar to RAD54-like; recombination ATPase helicase,
recombination-DNA binding COM; 3.00A {Danio rerio} SCOP:
c.37.1.19 c.37.1.19
Length = 644
Score = 23.4 bits (51), Expect = 6.2
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 46 QVVYVPLTDKQHQW 59
QVV LT Q +
Sbjct: 313 QVVCCNLTPLQKEL 326
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 23.1 bits (50), Expect = 7.3
Identities = 3/9 (33%), Positives = 4/9 (44%)
Query: 9 LRPGGRLII 17
+P L I
Sbjct: 133 AKPFAYLAI 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.140 0.418
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 931,589
Number of extensions: 41108
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 48
Length of query: 61
Length of database: 6,701,793
Length adjustment: 32
Effective length of query: 29
Effective length of database: 5,808,321
Effective search space: 168441309
Effective search space used: 168441309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)