RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5588
(61 letters)
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 72.6 bits (177), Expect = 2e-18
Identities = 38/57 (66%), Positives = 43/57 (75%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP 60
LIDQL+PGGRLI+PVGP G Q LEQ DK DG+I PLM V+YVPLTDK+ QW
Sbjct: 166 ALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWS 222
>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 223
Score = 62.2 bits (150), Expect = 2e-14
Identities = 28/49 (57%), Positives = 38/49 (77%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPL 52
ELI+QL GGRLI+PVGP+G +Q ++Q DK+ +G + T LM V+YVPL
Sbjct: 175 ELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 223
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl
O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 55.8 bits (133), Expect = 4e-12
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPL 52
QL+ GGR+I+P+ + S + + K D + ++ ++
Sbjct: 160 TWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITA 208
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 215
Score = 53.3 bits (127), Expect = 3e-11
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQ 56
LI+QL+ GG+LIIPVG Q L ++ K DG I V +VPL +
Sbjct: 161 PLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDG-IKIKNHGGVAFVPLIGEY 212
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 224
Score = 49.4 bits (117), Expect = 1e-09
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP 60
+ +QL+ GG +I+P+G Q L ++ K + + L +V++ + + +
Sbjct: 150 KPYEQLKEGGIMILPIGVGRV-QKLYKVIKK-GNSPSLENLGEVMFGRIGGL-YGFY 203
>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 194
Score = 26.5 bits (57), Expect = 0.19
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITR 41
E + L+ G + + + + A+SL + K++ G +
Sbjct: 142 EGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVET 179
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 25.6 bits (55), Expect = 0.32
Identities = 4/14 (28%), Positives = 10/14 (71%)
Query: 4 ELIDQLRPGGRLII 17
++I ++ GG++I
Sbjct: 116 KMIHSVKKGGKIIC 129
>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli
[TaxId: 562]}
Length = 176
Score = 24.8 bits (53), Expect = 0.62
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 4 ELIDQLRPGGRLIIPVGPE 22
L++Q++PG +I PE
Sbjct: 14 ALVEQMQPGSAALIFAAPE 32
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 251
Score = 24.7 bits (52), Expect = 0.68
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 4 ELIDQLRPGGRLII 17
++ + L+PGG I
Sbjct: 130 KVAEALKPGGVFIT 143
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 24.5 bits (52), Expect = 0.82
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 4 ELIDQLRPGGRLII 17
L L+PGG ++I
Sbjct: 122 LLAQSLKPGGIMLI 135
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 176
Score = 24.2 bits (51), Expect = 1.1
Identities = 3/20 (15%), Positives = 9/20 (45%)
Query: 29 EQIDKNLDGTITRTPLMQVV 48
++ D + +G + R +
Sbjct: 14 DRWDFDGNGALERADFEKEA 33
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 24.3 bits (51), Expect = 1.1
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 46 QVVYVPLTDKQHQW 59
VY LT +Q
Sbjct: 4 TNVYCNLTPEQAAM 17
>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica)
[TaxId: 5759]}
Length = 134
Score = 23.9 bits (50), Expect = 1.2
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 25 AQSL-EQIDKNLDGTITRTPLMQV 47
A++L ++ID N DG ++ +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAF 25
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 23.6 bits (49), Expect = 1.7
Identities = 6/27 (22%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 2 VVELIDQLRPGGRLIIPV-GPEGSAQS 27
+ + I ++ GRL++ + G S ++
Sbjct: 10 LCKTILAIKTAGRLVLGIDGLSRSGKT 36
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 23.4 bits (49), Expect = 2.1
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 13 GRLIIPVGPEGS-----AQSLEQIDKNLDGTITRTPLMQ 46
GR+++ GP + L + NL +++ T
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAP 40
>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836)
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 23.3 bits (49), Expect = 2.2
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 4 ELIDQLRPGGRLII 17
+ L PGGR ++
Sbjct: 203 RYREALVPGGRALL 216
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB
{Salmonella typhimurium [TaxId: 90371]}
Length = 198
Score = 23.4 bits (49), Expect = 2.4
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 4 ELIDQLRPGGRLII 17
+ +PGG +I
Sbjct: 119 NMQRCTKPGGYNLI 132
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish
(Danio rerio) [TaxId: 7955]}
Length = 346
Score = 23.4 bits (49), Expect = 2.7
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 46 QVVYVPLTDKQHQW 59
QVV LT Q +
Sbjct: 15 QVVCCNLTPLQKEL 28
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora,
subsp. carotovora [TaxId: 554]}
Length = 376
Score = 22.8 bits (48), Expect = 3.4
Identities = 2/15 (13%), Positives = 6/15 (40%)
Query: 6 IDQLRPGGRLIIPVG 20
++ G + + G
Sbjct: 33 LNNCDQGKAVRLSAG 47
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase
D, MltD {Escherichia coli [TaxId: 562]}
Length = 48
Score = 20.8 bits (44), Expect = 8.2
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 5 LIDQLRPGGRLIIPV 19
L+PG +L + V
Sbjct: 33 DTANLQPGDKLTLFV 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.140 0.418
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 225,592
Number of extensions: 7946
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 22
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)