BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5589
(60 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VQH2|DUOX_DROME Dual oxidase OS=Drosophila melanogaster GN=Duox PE=1 SV=2
Length = 1537
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 42/54 (77%)
Query: 1 MTRKTPPAYSDGVYMLAGMDRPSPRTLSTLFMKGEDGQPSMKNRTALLAFFGKF 54
+ RK PP+YSDGVY +AG +RPS R LS LFM+G+DG S NRTALLAFFG+
Sbjct: 91 LVRKAPPSYSDGVYAMAGANRPSTRRLSRLFMRGKDGLGSKFNRTALLAFFGQL 144
>sp|Q8CIY2|DUOX1_RAT Dual oxidase 1 OS=Rattus norvegicus GN=Duox1 PE=1 SV=1
Length = 1551
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 1 MTRKTPPAYSDGVYM-LAGMDRPSPRTLSTLFMKGEDGQPSMKNRTALLAFFG 52
+ R P +Y+DGVY L P+PR LS M+G GQPS++NRT L FFG
Sbjct: 51 LQRLVPASYADGVYQPLREPYLPNPRHLSNRVMRGPAGQPSLRNRTVLGVFFG 103
>sp|Q9MZF4|DUOX1_CANFA Dual oxidase 1 OS=Canis familiaris GN=DUOX1 PE=1 SV=1
Length = 1551
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 MTRKTPPAYSDGVYMLAGMDR-PSPRTLSTLFMKGEDGQPSMKNRTALLAFFG 52
+ R P +Y+DGVY G P+PR LS M+G GQ S++NRT L FFG
Sbjct: 51 LQRLVPASYADGVYQPLGEPHLPNPRDLSNAAMRGPAGQASLRNRTVLGVFFG 103
>sp|Q8HZK3|DUOX1_PIG Dual oxidase 1 OS=Sus scrofa GN=DUOX1 PE=2 SV=1
Length = 1553
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 MTRKTPPAYSDGVYMLAGMDR-PSPRTLSTLFMKGEDGQPSMKNRTALLAFFG 52
+ R P +Y+DGVY G P+PR LS M+G GQ S++NRT L FFG
Sbjct: 51 LQRLVPASYADGVYQPLGEPHLPNPRDLSNTAMRGPAGQASLRNRTVLGVFFG 103
>sp|Q9NRD8|DUOX2_HUMAN Dual oxidase 2 OS=Homo sapiens GN=DUOX2 PE=1 SV=2
Length = 1548
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1 MTRKTPPAYSDGVYM-LAGMDRPSPRTLSTLFMKGEDGQPSMKNRTALLAFFG 52
+ R+ P Y+DGVY L P+PR LS +G G PS+ NRT L FFG
Sbjct: 57 LQRRVPANYADGVYQALEEPQLPNPRRLSNAATRGIAGLPSLHNRTVLGVFFG 109
>sp|Q9NRD9|DUOX1_HUMAN Dual oxidase 1 OS=Homo sapiens GN=DUOX1 PE=1 SV=1
Length = 1551
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1 MTRKTPPAYSDGVYMLAGMDR-PSPRTLSTLFMKGEDGQPSMKNRTALLAFFG 52
+ R P +Y+DGVY G P+PR LS +G G S++NRT L FFG
Sbjct: 51 LQRLVPASYADGVYQPLGEPHLPNPRDLSNTISRGPAGLASLRNRTVLGVFFG 103
>sp|Q8HZK2|DUOX2_PIG Dual oxidase 2 OS=Sus scrofa GN=DUOX2 PE=1 SV=2
Length = 1545
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1 MTRKTPPAYSDGVYMLAGMDR-PSPRTLSTLFMKGEDGQPSMKNRTALLAFFG 52
+ R P Y+DGVY G P+PR LS M+G G S++NRT L FFG
Sbjct: 57 LRRLVPANYADGVYQALGEPLLPNPRQLSHTTMRGPAGLRSIRNRTVLGVFFG 109
>sp|O61213|DUOX1_CAEEL Dual oxidase 1 OS=Caenorhabditis elegans GN=bli-3 PE=1 SV=2
Length = 1497
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 1 MTRKTPPAYSDGVYMLAGMDRPSPRTLSTLFMKGEDGQPSMKNRTALLAFFGK 53
+ R YSDGVY + PS R LS + KGE G P+ + T LLAFF +
Sbjct: 50 LHRDARSYYSDGVYSVNN-SLPSARELSDILFKGESGIPNTRGCTTLLAFFSQ 101
>sp|Q9ES45|DUOX2_RAT Dual oxidase 2 OS=Rattus norvegicus GN=Duox2 PE=2 SV=1
Length = 1517
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 MTRKTPPAYSDGVYM-LAGMDRPSPRTLSTLFMKGEDGQPSMKNRTALLAFFG 52
+ R P Y+DGVY L P+ R LS KG+ G PS NRT L FFG
Sbjct: 57 LRRLVPANYADGVYQALQEPLLPNARLLSDAVSKGKAGLPSAHNRTVLGLFFG 109
>sp|Q54CU4|COLA_DICDI Colossin-A OS=Dictyostelium discoideum GN=colA PE=3 SV=1
Length = 11103
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 8 AYSDGVYMLAGMDRPSPRTLSTLFMKGEDGQP 39
A SDG+Y+LA D P P + LF G+ P
Sbjct: 536 ANSDGLYLLANQDLPLPGVVVQLFKSGQSAIP 567
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,343,836
Number of Sequences: 539616
Number of extensions: 659384
Number of successful extensions: 1034
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 11
length of query: 60
length of database: 191,569,459
effective HSP length: 33
effective length of query: 27
effective length of database: 173,762,131
effective search space: 4691577537
effective search space used: 4691577537
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)