Query psy5589
Match_columns 60
No_of_seqs 101 out of 182
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 21:24:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2v_A Myeloperoxidase; heme-p 99.9 3.5E-26 1.2E-30 138.4 4.8 59 1-59 29-97 (104)
2 3q9k_A Lactoperoxidase, LPO; b 99.8 3E-21 1E-25 143.0 5.4 59 1-59 43-111 (595)
3 1q4g_A Prostaglandin G/H synth 99.7 1.9E-17 6.5E-22 121.5 6.2 58 1-59 117-178 (553)
4 3nt1_A Prostaglandin-endoperox 99.7 6.8E-17 2.3E-21 119.7 6.6 58 1-59 117-178 (587)
5 4ham_A LMO2241 protein; struct 40.9 10 0.00035 22.0 1.2 19 12-31 30-48 (134)
6 3neu_A LIN1836 protein; struct 31.6 32 0.0011 19.7 2.2 19 12-31 29-47 (125)
7 3ogl_Q JAZ1 incomplete degron 27.3 34 0.0011 14.9 1.4 13 20-32 1-13 (21)
8 2ek5_A Predicted transcription 27.0 36 0.0012 19.7 2.0 20 11-31 19-38 (129)
9 1hw1_A FADR, fatty acid metabo 22.6 52 0.0018 20.2 2.2 20 11-31 22-41 (239)
10 2jmf_B Neurogenic locus notch 22.2 14 0.00047 16.7 -0.4 10 5-14 12-21 (26)
No 1
>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A* 4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A*
Probab=99.92 E-value=3.5e-26 Score=138.43 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=51.6
Q ss_pred CccCCCCCCCccccCcC---------CCCCCCHHHHhHHHhcCCC-CCCCCCchhHHHHHHHHHHHhhc
Q psy5589 1 MTRKTPPAYSDGVYMLA---------GMDRPSPRTLSTLFMKGED-GQPSMKNRTALLAFFGKFWRKIL 59 (60)
Q Consensus 1 l~Rllp~~Y~DGv~~P~---------G~~LP~pR~VS~~i~~~~~-~~~~~~~~t~l~m~fGQfi~h~~ 59 (60)
|.|++||+|+||+++|+ |.+||+||+||++|+...+ ....+..+|+|+|||||||+|+|
T Consensus 29 f~R~lpp~Y~DG~~~p~~~~~~~~~~g~~lP~pR~VS~~l~~~~~~~~~~~~~~t~~~~~wgQfi~HDl 97 (104)
T 1d2v_A 29 FVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDL 97 (104)
T ss_dssp CBCSSCCCCTTSSSCCTTSSTTCCBTTBCCCCHHHHHHHHTCCCGGGCCEEEEEEHHHHHHHHHHHHHH
T ss_pred cccccCcccccCcccccccccccccCCCcCCCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHHHhhH
Confidence 68999999999999998 4589999999999998654 23456778999999999999987
No 2
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=99.83 E-value=3e-21 Score=143.00 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=50.9
Q ss_pred CccCCCCCCCccccCcCCC---------CCCCHHHHhHHHhcCC-CCCCCCCchhHHHHHHHHHHHhhc
Q psy5589 1 MTRKTPPAYSDGVYMLAGM---------DRPSPRTLSTLFMKGE-DGQPSMKNRTALLAFFGKFWRKIL 59 (60)
Q Consensus 1 l~Rllp~~Y~DGv~~P~G~---------~LP~pR~VS~~i~~~~-~~~~~~~~~t~l~m~fGQfi~h~~ 59 (60)
|.|+|||+|+|||++|+|+ +|||||+||++|+... +....+.++|+|+|||||||+|+|
T Consensus 43 f~R~lpp~Y~DGv~~Pr~~~~~~~~~g~~lP~~R~VS~~l~~~~~~~~~~~~~~t~~~~~wGQfi~HDi 111 (595)
T 3q9k_A 43 LARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDL 111 (595)
T ss_dssp CBCSSCCCCTTSSSCCTTSSTTCCBTTBCCCCHHHHHHHHTCCSCCTTCEEEEEEHHHHHHHHHHHHHH
T ss_pred ccCCCCcccccccccccccccccccCCCCCCCHHHHHHHHHhcccccCCCCCCchHHHHHHHHHHHhhh
Confidence 6899999999999999864 7999999999998732 233456778999999999999987
No 3
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=99.69 E-value=1.9e-17 Score=121.47 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=50.2
Q ss_pred CccCCCCCCCccccCcC---C-CCCCCHHHHhHHHhcCCCCCCCCCchhHHHHHHHHHHHhhc
Q psy5589 1 MTRKTPPAYSDGVYMLA---G-MDRPSPRTLSTLFMKGEDGQPSMKNRTALLAFFGKFWRKIL 59 (60)
Q Consensus 1 l~Rllp~~Y~DGv~~P~---G-~~LP~pR~VS~~i~~~~~~~~~~~~~t~l~m~fGQfi~h~~ 59 (60)
|.|++||.|+|| ..|+ | .+||+||.||++++..+...+++.+.|+|+|||||||+|++
T Consensus 117 ~~R~lpp~y~Dg-~~p~~~~~~~~LP~pr~vs~~l~~~~~~~p~~~~~s~l~~~fgQfi~HDi 178 (553)
T 1q4g_A 117 YTRILPSVPRDC-PTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTHQF 178 (553)
T ss_dssp CEESSCCCCTTC-SBTTBSSSCSSCCCHHHHHHHHTBCSSCCBCTTCBBHHHHHHHHHHHTTT
T ss_pred eeeccCCCccCC-CCcccCCCCCCCCCHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHhhhh
Confidence 689999999999 5786 3 68999999999999876555556778999999999999986
No 4
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=99.67 E-value=6.8e-17 Score=119.71 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=52.3
Q ss_pred CccCCCCCCCccccCcC----CCCCCCHHHHhHHHhcCCCCCCCCCchhHHHHHHHHHHHhhc
Q psy5589 1 MTRKTPPAYSDGVYMLA----GMDRPSPRTLSTLFMKGEDGQPSMKNRTALLAFFGKFWRKIL 59 (60)
Q Consensus 1 l~Rllp~~Y~DGv~~P~----G~~LP~pR~VS~~i~~~~~~~~~~~~~t~l~m~fGQfi~h~~ 59 (60)
|.|+|||.|+||++ |+ |..||+||.||+++++.++..++..+.|+|+++|||||+|.+
T Consensus 117 ~~R~lPp~y~dg~~-P~g~~~~~~LP~pr~vs~~l~~r~~~~p~~~~~s~l~~~fgQ~i~Hd~ 178 (587)
T 3nt1_A 117 YTRALPPVADDCPT-PMGVKGNKELPDSKEVLEKVLLRREFIPDPQGSNMMFAFFAQHFTHQF 178 (587)
T ss_dssp CBBSSCCCCTTCSB-TTBSSSCSSCCCHHHHHHHHTBCSSCCBCTTCBBHHHHHHHHHHHTTT
T ss_pred eecccCCccccCCC-ccccCCCCCCCCHHHHHHHHhcCCCcCCCCCCccHHHHHHHHHHhhhc
Confidence 68999999999998 98 467999999999999988777777789999999999999975
No 5
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=40.91 E-value=10 Score=21.99 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=14.3
Q ss_pred cccCcCCCCCCCHHHHhHHH
Q psy5589 12 GVYMLAGMDRPSPRTLSTLF 31 (60)
Q Consensus 12 Gv~~P~G~~LP~pR~VS~~i 31 (60)
|.+ +.|..||+-|+++..+
T Consensus 30 G~l-~pG~~LPser~La~~~ 48 (134)
T 4ham_A 30 GVL-QEGEKILSIREFASRI 48 (134)
T ss_dssp TSS-CTTCEECCHHHHHHHH
T ss_pred CCC-CCCCCCccHHHHHHHH
Confidence 444 3488899999988776
No 6
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=31.58 E-value=32 Score=19.73 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=14.3
Q ss_pred cccCcCCCCCCCHHHHhHHH
Q psy5589 12 GVYMLAGMDRPSPRTLSTLF 31 (60)
Q Consensus 12 Gv~~P~G~~LP~pR~VS~~i 31 (60)
|.+ +.|..||+-|+++..+
T Consensus 29 g~~-~~g~~Lps~~~La~~~ 47 (125)
T 3neu_A 29 GEW-KGEDKLPSVREMGVKL 47 (125)
T ss_dssp TSS-CTTCBCCCHHHHHHHH
T ss_pred CCC-CCCCCCCCHHHHHHHH
Confidence 444 3488899999998876
No 7
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=27.30 E-value=34 Score=14.87 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=10.2
Q ss_pred CCCCHHHHhHHHh
Q psy5589 20 DRPSPRTLSTLFM 32 (60)
Q Consensus 20 ~LP~pR~VS~~i~ 32 (60)
++|-+|..|..=|
T Consensus 1 dlp~aRk~SLqRF 13 (21)
T 3ogl_Q 1 ELPIARRASLHRF 13 (26)
T ss_pred CcchhHHHHHHHH
Confidence 4799999998644
No 8
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=27.03 E-value=36 Score=19.74 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=14.4
Q ss_pred ccccCcCCCCCCCHHHHhHHH
Q psy5589 11 DGVYMLAGMDRPSPRTLSTLF 31 (60)
Q Consensus 11 DGv~~P~G~~LP~pR~VS~~i 31 (60)
+|.. +.|..||+-|+++..+
T Consensus 19 ~g~l-~~G~~LPse~~La~~~ 38 (129)
T 2ek5_A 19 DGTL-SIDQRVPSTNELAAFH 38 (129)
T ss_dssp TTSS-CTTSCBCCHHHHHHHT
T ss_pred hCCC-CCCCcCcCHHHHHHHH
Confidence 3444 3488899999988775
No 9
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=22.65 E-value=52 Score=20.16 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=14.2
Q ss_pred ccccCcCCCCCCCHHHHhHHH
Q psy5589 11 DGVYMLAGMDRPSPRTLSTLF 31 (60)
Q Consensus 11 DGv~~P~G~~LP~pR~VS~~i 31 (60)
+|.+. .|..||+-|+++..+
T Consensus 22 ~g~l~-pG~~LPsE~eLa~~~ 41 (239)
T 1hw1_A 22 NNRFP-PGTILPAERELSELI 41 (239)
T ss_dssp TTSSC-TTSBCCCHHHHHHHH
T ss_pred cCCCC-CCCCCCCHHHHHHHH
Confidence 45553 388899988887765
No 10
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=22.23 E-value=14 Score=16.69 Aligned_cols=10 Identities=40% Similarity=0.933 Sum_probs=7.3
Q ss_pred CCCCCCcccc
Q psy5589 5 TPPAYSDGVY 14 (60)
Q Consensus 5 lp~~Y~DGv~ 14 (60)
-||.|+|-+-
T Consensus 12 qppsyedcik 21 (26)
T 2jmf_B 12 QPPSYEDCIK 21 (26)
T ss_pred CCCCHHHHHH
Confidence 4888998653
Done!