RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5589
         (60 letters)



>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 570

 Score = 49.7 bits (118), Expect = 8e-10
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 10/64 (15%)

Query: 1  MTRKTPPAYSDGVYMLAGMDR---------PSPRTLSTLFMKGEDGQ-PSMKNRTALLAF 50
            R  P  Y DG  +  G               R +S   ++    Q    + R+ +   
Sbjct: 29 FVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQ 88

Query: 51 FGKF 54
          +G+ 
Sbjct: 89 WGQL 92


>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
           aries) [TaxId: 9940]}
          Length = 511

 Score = 46.9 bits (111), Expect = 1e-08
 Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 3/56 (5%)

Query: 2   TRKTPPAYSDGVYMLA---GMDRPSPRTLSTLFMKGEDGQPSMKNRTALLAFFGKF 54
           TR  P    D    +        P    LS  F+      P  +    + AFF + 
Sbjct: 76  TRILPSVPRDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQH 131


>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 511

 Score = 43.4 bits (102), Expect = 1e-07
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 2   TRKTPPAYSDGVYMLA---GMDRPSPRTLSTLFMKGEDGQPSMKNRTALLAFFGKF 54
           TR  PP   D    +      + P  + +    +   +  P  +    + AFF + 
Sbjct: 77  TRALPPVADDCPTPMGVKGNKELPDSKEVLEKVLLRREFIPDPQGSNMMFAFFAQH 132


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 24.4 bits (52), Expect = 0.83
 Identities = 2/17 (11%), Positives = 7/17 (41%)

Query: 44  RTALLAFFGKFWRKILK 60
           +  ++ F    +  +L 
Sbjct: 117 KGLIINFLESSFLGLLD 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 220,497
Number of extensions: 7043
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 4
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)