BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy559
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|I Chain I, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|K Chain K, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|M Chain M, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|O Chain O, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|A Chain A, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|C Chain C, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|E Chain E, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|G Chain G, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|I Chain I, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|K Chain K, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|M Chain M, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|O Chain O, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 349
Score = 291 bits (744), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 221/337 (65%), Gaps = 9/337 (2%)
Query: 39 KYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIR 98
KYGGR VT++PG G+G E+ V+ +F +P+D+ET+ I ++D + + A+ S++
Sbjct: 13 KYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIK-QTDHKEGVYEAVESLK 71
Query: 99 RNGVAIKGNIET-------GSLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQN 151
RN + +KG T GSL+ +L + + V+ R ID++++R+N
Sbjct: 72 RNKIGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIREN 131
Query: 152 TEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISD 211
TEGE++ LEHESV GVVES+K++T + R++++AF++AKK+ RK VT VHKANIMK+ D
Sbjct: 132 TEGEFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGD 191
Query: 212 GLFLEISRKVA-KEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLI 270
GLF I ++ KEYP+I+ + +I+DN MQ V+ P QFDV+V P++YG I N+ LI
Sbjct: 192 GLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALI 251
Query: 271 GGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASII 330
GG GL++G N+G YAVFEPG+R+ G I G+N+ANP AM+ +S ML HLG ++A+ I
Sbjct: 252 GGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRI 311
Query: 331 KLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQT 367
A+ +TI E K T D+GG++++ D II + T
Sbjct: 312 SKAVHETIAEGKHTTRDIGGSSSTTDFTNEIINKLST 348
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 144/343 (41%), Positives = 217/343 (63%), Gaps = 9/343 (2%)
Query: 39 KYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIR 98
KYGGR VT++PG G+G E+ V+ +F +P+D+ET+ I ++D + + A+ S++
Sbjct: 13 KYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIK-QTDHKEGVYEAVESLK 71
Query: 99 RNGVAIKGNIET-------GSLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQN 151
RN + +KG T GSL+ +L + + V+ R ID++++R+N
Sbjct: 72 RNKIGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIREN 131
Query: 152 TEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISD 211
TEGE++ LEHESV GVVES+K+ T + R++++AF++AKK+ RK VT VHKANI K+ D
Sbjct: 132 TEGEFSGLEHESVPGVVESLKVXTRPKTERIARFAFDFAKKYNRKSVTAVHKANIXKLGD 191
Query: 212 GLFLEISRKVA-KEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLI 270
GLF I ++ KEYP+I+ + +I+DN Q V+ P QFDV+V P+ YG I N+ LI
Sbjct: 192 GLFRNIITEIGQKEYPDIDVSSIIVDNASXQAVAKPHQFDVLVTPSXYGTILGNIGAALI 251
Query: 271 GGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASII 330
GG GL++G N+G YAVFEPG+R+ G I G+N+ANP A + +S L HLG ++A+ I
Sbjct: 252 GGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAXILSSTLXLNHLGLNEYATRI 311
Query: 331 KLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQTNDLRHH 373
A+ +TI E K T D+GG++++ D II + T HH
Sbjct: 312 SKAVHETIAEGKHTTRDIGGSSSTTDFTNEIINKLSTXHHHHH 354
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|J Chain J, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|L Chain L, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|N Chain N, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|P Chain P, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|B Chain B, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|D Chain D, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|F Chain F, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|H Chain H, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|J Chain J, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|L Chain L, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|N Chain N, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|P Chain P, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 354
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 199/337 (59%), Gaps = 19/337 (5%)
Query: 42 GRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDP--KSDSNDDLEYAITSIRR 99
G+ V+ + G GIGPE+ VK++F A VP+++E+ + P + + A+ SI +
Sbjct: 20 GKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIFVNGLTTIPDPAVQSITK 79
Query: 100 NGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRCRQ---------QGIDIVIVRQ 150
N VA+KG + T +L L LR + +VR + + +D+V++R+
Sbjct: 80 NLVALKGPLATPIGKGHRSLNLT---LRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRE 136
Query: 151 NTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKIS 210
NTEGEY+ +EH GVV+S+K+IT S R+ +YAFEYA+ GR +V VHK+ I +++
Sbjct: 137 NTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLA 196
Query: 211 DGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFD--VMVMPNLYGAITSNVICG 268
DGLF+ ++++++KEYP++ +IDN+ +++V+NP + V V PNLYG I S++ G
Sbjct: 197 DGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSG 256
Query: 269 LIGGA-GLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHA 327
L G+ GL N G ++FE + IAG++ ANP A+L +SV ML H+G HA
Sbjct: 257 LSAGSLGLTPSANIGHKISIFE-AVHGSAPDIAGQDKANPTALLLSSVMMLNHMGLTNHA 315
Query: 328 SIIKLAIEKTI-NEDKIHTPDLGGTATSIDVVQNIIK 363
I+ A+ TI + + T DL GTAT+ + +IK
Sbjct: 316 DQIQNAVLSTIASGPENRTGDLAGTATTSSFTEAVIK 352
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 197/337 (58%), Gaps = 19/337 (5%)
Query: 42 GRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDP--KSDSNDDLEYAITSIRR 99
G+ V+ + G GIGPE+ VK++F A VP+++E+ + P + + A+ SI +
Sbjct: 20 GKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIFVNGLTTIPDPAVQSITK 79
Query: 100 NGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRCRQ---------QGIDIVIVRQ 150
N VA+KG + T +L L LR + +VR + + +D+V++R+
Sbjct: 80 NLVALKGPLATPIGKGHRSLNLT---LRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRE 136
Query: 151 NTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKIS 210
NTEGEY+ +EH GVV+S+K+IT S R+ +YAFEYA+ GR +V VHK+ I +++
Sbjct: 137 NTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLA 196
Query: 211 DGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFD--VMVMPNLYGAITSNVICG 268
DGLF+ ++++++KEYP++ +IDN+ +++V+NP + V V PNLYG I S++ G
Sbjct: 197 DGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSG 256
Query: 269 LIGGA-GLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHA 327
L G+ GL N G ++FE + IAG++ ANP A+L +SV L H G HA
Sbjct: 257 LSAGSLGLTPSANIGHKISIFE-AVHGSAPDIAGQDKANPTALLLSSVXXLNHXGLTNHA 315
Query: 328 SIIKLAIEKTI-NEDKIHTPDLGGTATSIDVVQNIIK 363
I+ A+ TI + + T DL GTAT+ + +IK
Sbjct: 316 DQIQNAVLSTIASGPENRTGDLAGTATTSSFTEAVIK 352
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 189/354 (53%), Gaps = 26/354 (7%)
Query: 42 GRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFET----VQIDPKSDSNDDLEYAITSI 97
GR +T++PG GIGPE + +V A P+ +E + + ++ + I SI
Sbjct: 18 GRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESI 77
Query: 98 RRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRCRQQ-----------GIDIV 146
R+ V +KG +ET + K + LR + +VR ++ GID+V
Sbjct: 78 RKTRVVLKGPLET---PVGYGEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLV 134
Query: 147 IVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANI 206
+VR+N E YA +EH V +++K+I+ S ++ ++AFE A+ GRKKV K+NI
Sbjct: 135 VVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNI 194
Query: 207 MKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVI 266
MK+++G +VA+EYP+IE +I+DN QLV P+QF+V+V N+ G I S++
Sbjct: 195 MKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLT 254
Query: 267 CGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKH 326
GLIGG G N G+ A+FE + AGKN+ NP A+L ++V ML +L
Sbjct: 255 SGLIGGLGFAPSANIGNEVAIFE-AVHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFAT 313
Query: 327 ASIIKLAIEKTINEDKIHTPDLGG-------TATSIDVVQNIIKLVQTNDLRHH 373
A +I+ A+ T+ E ++ T D+ G T + ++QN+ K + +R +
Sbjct: 314 ADLIENALLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQNLGKTPRKTQVRGY 367
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 175/339 (51%), Gaps = 27/339 (7%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDF-------ETVQIDPKSDSNDDLEY------ 92
+ ++ G GIG E++ + V G+P++F ET + S + +E
Sbjct: 4 ICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHA 63
Query: 93 ----AITSIRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIV 148
A TS R G I + + L V V + G+D+VIV
Sbjct: 64 TLFGAATSPTRKVPGFFGAIR-------YLRRRLDLYANVRPAKSRPVPGSRPGVDLVIV 116
Query: 149 RQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMK 208
R+NTEG Y E +D V + +I+ S R+ + A A+ RK + HKAN++
Sbjct: 117 RENTEGLYVEQERRYLD-VAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLP 175
Query: 209 ISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICG 268
++ GLFL+ ++VAK++P + D+I+DN MQLV P++FDV+V NL G I S++ G
Sbjct: 176 LTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAG 235
Query: 269 LIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHAS 328
L+GG GL N GD AVFEP + IAGK IANP A + ++ ML++LG + A
Sbjct: 236 LVGGLGLAPSGNIGDTTAVFEP-VHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAK 294
Query: 329 IIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQT 367
++ A++ + E TPDLGG AT+ + +++ +++
Sbjct: 295 RVEKAVDLVL-ERGPRTPDLGGDATTEAFTEAVVEALKS 332
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 167 bits (423), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 175/339 (51%), Gaps = 27/339 (7%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDF-------ETVQIDPKSDSNDDLEY------ 92
+ ++ G GIG E++ + V G+P++F ET + S + +E
Sbjct: 5 ICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHA 64
Query: 93 ----AITSIRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIV 148
A TS R G I + + L V V + G+D+VIV
Sbjct: 65 TLFGAATSPTRKVPGFFGAIR-------YLRRRLDLYANVRPAKSRPVPGSRPGVDLVIV 117
Query: 149 RQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMK 208
R+NTEG Y E +D V + +I+ S R+ + A A+ RK + HKAN++
Sbjct: 118 RENTEGLYVEQERRYLD-VAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLP 176
Query: 209 ISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICG 268
++ GLFL+ ++VAK++P + D+I+DN MQLV P++FDV+V NL G I S++ G
Sbjct: 177 LTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAG 236
Query: 269 LIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHAS 328
L+GG GL N GD AVFEP + IAGK IANP A + ++ ML++LG + A
Sbjct: 237 LVGGLGLAPSGNIGDTTAVFEP-VHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAK 295
Query: 329 IIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQT 367
++ A++ + E TPDLGG AT+ + +++ +++
Sbjct: 296 RVEKAVDLVL-ERGPRTPDLGGDATTEAFTEAVVEALKS 333
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 172/332 (51%), Gaps = 20/332 (6%)
Query: 46 VTMLPGGGIGPELMSYVKEVF----RYAGVPVDFETVQIDPKSDSNDDLEYAITSIR--- 98
V ++ G GIGPE++S K + +P+++ V+ ++ + S++
Sbjct: 4 VALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIID 63
Query: 99 RNGVAIKGNIETGSLDSLWTLKLCRLILRVI--AMMILSVRCRQQGIDIVIVRQNTEGEY 156
+ + +KG + + D + L+ + I A I + + +DI+IVR+NTE Y
Sbjct: 64 KADIILKGPVGESAADVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLY 123
Query: 157 AMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLE 216
EH DGV MKIIT S R++K +A + RKKVT VHKAN+M+I+DGLF E
Sbjct: 124 KGFEHIVSDGVAVGMKIITRFASERIAKVGLNFALR-RRKKVTCVHKANVMRITDGLFAE 182
Query: 217 ISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLI 276
R V K ++E+++M +D LV NP+ FDV+V N+YG I S+ + G G+
Sbjct: 183 ACRSVLK--GKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIA 240
Query: 277 SGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHL-------GHMKHASI 329
N GD A+FEP IAGKNI NP A L + M E + ++K +
Sbjct: 241 PSANIGDKKALFEP-VHGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRA 299
Query: 330 IKLAIEKTINEDKIHTPDLGGTATSIDVVQNI 361
++ AI E K TPD+GG AT+ D++ I
Sbjct: 300 LENAIYLVYKERKALTPDVGGNATTDDLINEI 331
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 138/228 (60%), Gaps = 3/228 (1%)
Query: 140 QQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVT 199
+ G+D+VIVR+NTEG Y E +D V + +I+ S R+ + A A+ RK +
Sbjct: 109 RPGVDLVIVRENTEGLYVEQERRYLD-VAIADAVISKKASERIGRAALRIAEGRPRKTLH 167
Query: 200 TVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYG 259
HKAN++ ++ GLFL+ ++VAK++P + D+I+DN QLV P+++DV+V NL G
Sbjct: 168 IAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCATQLVMRPERYDVIVTTNLLG 227
Query: 260 AITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLE 319
I S++ GL+GG GL N GD AVFEP + IAGK IANP A + ++ ML+
Sbjct: 228 DILSDLAAGLMGGLGLAPSGNIGDTTAVFEP-VHGSAPDIAGKGIANPTAAILSAAMMLD 286
Query: 320 HLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQT 367
+LG + A ++ A++ + + TPDLGG AT+ + +++ +++
Sbjct: 287 YLGEKEAAKRVEKAVDLVLERGPM-TPDLGGDATTEAFTEAVVEALKS 333
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 24/246 (9%)
Query: 138 CRQQGIDIVIVRQNTEGEYA----MLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKF 193
+ + +D+VIVR+NTE Y M+++ V E+++ I+ S ++ K AFE AK
Sbjct: 119 AKGKPVDLVIVRENTECLYVKEERMVQNTPGKRVAEAIRRISEEASTKIGKMAFEIAKS- 177
Query: 194 GRKK--------------VTTVHKANIMKISDGLFLEISR---KVAKEYPEIEHNDMIID 236
R+K VT +HK+N+M ++DGLF E R + Y I ++ I+D
Sbjct: 178 -RQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVD 236
Query: 237 NTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTG 296
+ +L P+ FDV+V PNLYG I S+ LIG GL+ N GD++ + EP +
Sbjct: 237 SMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDNFVMSEP-VHGSA 295
Query: 297 TAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSID 356
IAG+ IANP+A + MLE +GH A+ I A++K + E K+ TPDLGG + + +
Sbjct: 296 PDIAGRGIANPVATFRSVALMLEFMGHQDAAADIYTAVDKVLTEGKVLTPDLGGKSGTNE 355
Query: 357 VVQNII 362
+ ++
Sbjct: 356 ITDAVL 361
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 168/344 (48%), Gaps = 64/344 (18%)
Query: 43 RNAVTMLPGGGIGPELMSYVKEV-------------FRY----------AGVPVDFETVQ 79
+ + +LPG GIGPE+M EV F Y AG P+ ET+
Sbjct: 23 KKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLD 82
Query: 80 I-------------DPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSL-DSLWTLKLC 122
+ PK D N E + IR+ G+ + N+ + DSL
Sbjct: 83 VCRGSDAILLGAVGGPKWDQNPSELRPEKGLLGIRK-GLDLFANLRPVKVYDSL--ADAS 139
Query: 123 RLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEY----AMLEHESVDGVVESMKIITAAN 178
L VI +G+D+VIVR+ T G Y + E + V+++ + T
Sbjct: 140 PLKKEVI-----------EGVDLVIVRELTGGLYFGEPSERYEEGEEAAVDTL-LYTREE 187
Query: 179 SYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNT 238
R+ + AFE A +KKVT+V KAN+++ S L+ E++ +VAKEYP++E M++DN
Sbjct: 188 IERIIRKAFELALTR-KKKVTSVDKANVLE-SSRLWREVAEEVAKEYPDVELEHMLVDNA 245
Query: 239 CMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYG-DHYAVFEPGTRNTGT 297
MQL+ NP+QFDV+V N++G I S+ + G G++ + D ++EP +
Sbjct: 246 AMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDGLGLYEP-VHGSAP 304
Query: 298 AIAGKNIANPIAMLNASVDMLEH-LGHMKHASIIKLAIEKTINE 340
IAGK IANP+A + ++ ML + G + A I+ A+EK + E
Sbjct: 305 DIAGKGIANPLATILSAAMMLRYSFGLEEEAKAIEKAVEKVLAE 348
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 165/346 (47%), Gaps = 34/346 (9%)
Query: 46 VTMLPGGGIGPEL----------------MSYVKEVFRYAGVPVD-FETVQIDPKSDSND 88
V +LPG GIGPE+ + EVF + G +D F +P +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 89 DLEY----AITSIRRNGVAIKGNIETG------SLDSLWTLKLCRLILRVIAMMILSVRC 138
+ E ++ + +G+ K ETG S D L+ ++ + + L
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 139 RQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKV 198
+G+D++IVR+ T G Y + + + + R+++ AFE+A+K RK V
Sbjct: 123 -ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEFARKR-RKHV 180
Query: 199 TTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLY 258
+V KAN++++ + + + +V + YP++ +D M LV +P +FDV+V N++
Sbjct: 181 VSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIF 239
Query: 259 GAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDML 318
G I S++ L G GL+ + G VFEP + IAGK IANP A + ++ ML
Sbjct: 240 GDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAILSAAMML 298
Query: 319 EH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
EH G ++ A ++ A+ K + E PDLGG+A + +++
Sbjct: 299 EHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLR 342
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 119/205 (58%), Gaps = 15/205 (7%)
Query: 142 GIDIVIVRQNTEGEY-----AMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRK 196
G+D+V VR+ + G Y + E + D ++ K + R+++ AFE AK RK
Sbjct: 139 GVDLVTVRELSYGVYYGQPRGLDEEKGFDTMIYDRKTVE-----RIARTAFEIAKNR-RK 192
Query: 197 KVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPN 256
KVT+V KAN++ S L+ ++ +VA+EYP++E + +DN MQL+ P QFDV++ N
Sbjct: 193 KVTSVDKANVL-YSSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDVILTTN 251
Query: 257 LYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVD 316
++G I S+ L G GL+ ++GD ++EP + IAGKNIANPIA + +
Sbjct: 252 MFGDILSDESAALPGSLGLLPSASFGDK-NLYEPAG-GSAPDIAGKNIANPIAQILSLAM 309
Query: 317 MLEH-LGHMKHASIIKLAIEKTINE 340
MLEH G ++ A I+ A+E I E
Sbjct: 310 MLEHSFGMVEEARKIERAVELVIEE 334
>pdb|3FMX|X Chain X, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Putida Complexed With Nadh
Length = 364
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 123/229 (53%), Gaps = 18/229 (7%)
Query: 143 IDIVIVRQNTEGEYA-----MLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKK 197
ID V+VR+NTEGEY+ M E+ + V++ I T R+ KYAF+ A+K RK
Sbjct: 128 IDFVVVRENTEGEYSSLGGIMFENTENEIVIQE-SIFTRRGVDRILKYAFDLAEKRERKH 186
Query: 198 VTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNL 257
VT+ K+N M IS + + + +A YP + + ID C + V P++FDV+V NL
Sbjct: 187 VTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNL 246
Query: 258 YGAITSNVICGLIGGAGLISGKNYG---DHYAVFEPGTRNTGTAIAGKNIANPIAMLNAS 314
+G I S++ G G+ N + ++FEP + I GKNIANPIAM+ +
Sbjct: 247 FGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEP-VHGSAPDIFGKNIANPIAMIWSG 305
Query: 315 VDMLEHLG------HMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDV 357
MLE LG H ++ AIE+ I + + TPD+GGT ++ V
Sbjct: 306 ALMLEFLGQGDERYQRAHDDMLN-AIERVIADGSV-TPDMGGTLSTQQV 352
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 178/362 (49%), Gaps = 57/362 (15%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRY-----------------------AGVPVDFETVQIDP 82
+ +LPG GIGPE+M V + AG P+ ET+ I
Sbjct: 5 LAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICR 64
Query: 83 KSDS-------NDDLEYAITSIRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILS 135
+SD+ ++ S+R + E G +L +K +L +
Sbjct: 65 RSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLK--- 121
Query: 136 VRCRQQGIDIVIVRQNTEGEY--------AMLEHESVDGVVESMKIITAANSYRLSKYAF 187
R R + +D+VIVR+ T G Y E+E VD + + + I R+ + AF
Sbjct: 122 -RERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTREEIE-----RIIEKAF 175
Query: 188 EYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPK 247
+ A+ RKK+ +V KAN+++ S ++ EI+ + AK+YP++E + M++D+T MQL++NP
Sbjct: 176 QLAQ-IRRKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTAMQLIANPG 233
Query: 248 QFDVMVMPNLYGAITSNVICGLIGGAGLI-SGKNYGDHYAVFEPGTRNTGTAIAGKNIAN 306
QFDV+V N++G I S++ + G G++ S D + ++EP + IAG+ AN
Sbjct: 234 QFDVIVTENMFGDILSDLASVITGSLGMLPSASLRSDRFGMYEP-VHGSAPDIAGQGKAN 292
Query: 307 PIAMLNASVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDL----GGTATSIDVVQNI 361
P+ + ++ ML + G K A+ I+ A++ + +D T DL G ++I++ +
Sbjct: 293 PLGTVLSAALMLRYSFGLEKEAAAIEKAVDDVL-QDGYCTGDLQVANGKVVSTIELTDRL 351
Query: 362 IK 363
I+
Sbjct: 352 IE 353
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 165/346 (47%), Gaps = 34/346 (9%)
Query: 46 VTMLPGGGIGPEL----------------MSYVKEVFRYAGVPVD-FETVQIDPKSDSND 88
V +LPG GIGPE+ + EVF + G +D F +P +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 89 DLEY----AITSIRRNGVAIKGNIETG------SLDSLWTLKLCRLILRVIAMMILSVRC 138
+ E ++ + +G+ K + ETG S D L+ ++ + + L
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 139 RQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKV 198
+G+D++IVR+ T G Y + + + + R+++ AFE A+K RK V
Sbjct: 123 -ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-RKHV 180
Query: 199 TTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLY 258
+V KAN++++ + + + +V + YP++ +D M LV +P +FDV+V N++
Sbjct: 181 VSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAAAMHLVRSPARFDVVVTGNIF 239
Query: 259 GAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDML 318
G I S++ L G GL+ + G VFEP + IAGK IANP A + ++ ML
Sbjct: 240 GDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAILSAAMML 298
Query: 319 EH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
EH G ++ A ++ A+ K + E PDLGG+A + +++
Sbjct: 299 EHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLR 342
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 181/373 (48%), Gaps = 57/373 (15%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRY-----------------------AGVPVDFETVQIDP 82
+ +LPG GIGPE+M V + AG P+ ET+ I
Sbjct: 5 LAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICR 64
Query: 83 KSDS-------NDDLEYAITSIRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILS 135
+SD+ ++ S+R + E G +L +K +L +
Sbjct: 65 RSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLK--- 121
Query: 136 VRCRQQGIDIVIVRQNTEGEY--------AMLEHESVDGVVESMKIITAANSYRLSKYAF 187
R R + +D+VIVR+ T G Y E+E VD + + + I R+ + AF
Sbjct: 122 -RERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTREEIE-----RIIEKAF 175
Query: 188 EYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPK 247
+ A+ RKK+ +V KAN+++ S ++ EI+ + AK+YP++E + M++D+T MQL++NP
Sbjct: 176 QLAQ-IRRKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPG 233
Query: 248 QFDVMVMPNLYGAITSNVICGLIGGAGLI-SGKNYGDHYAVFEPGTRNTGTAIAGKNIAN 306
QFDV+V N++G I S+ + G G++ S D + ++EP + IAG+ AN
Sbjct: 234 QFDVIVTENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEP-VHGSAPDIAGQGKAN 292
Query: 307 PIAMLNASVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDL----GGTATSIDVVQNI 361
P+ + ++ ML + G K A+ I+ A++ + +D T DL G ++I++ +
Sbjct: 293 PLGTVLSAALMLRYSFGLEKEAAAIEKAVDDVL-QDGYCTGDLQVANGKVVSTIELTDRL 351
Query: 362 IKLVQTNDLRHHV 374
I+ + + R +
Sbjct: 352 IEKLNNSAARPRI 364
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 165/346 (47%), Gaps = 34/346 (9%)
Query: 46 VTMLPGGGIGPEL----------------MSYVKEVFRYAGVPVD-FETVQIDPKSDSND 88
V +LPG GIGPE+ + EVF + G +D F +P +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 89 DLEY----AITSIRRNGVAIKGNIETG------SLDSLWTLKLCRLILRVIAMMILSVRC 138
+ E ++ + +G+ K + ETG S D L+ ++ + + L
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 139 RQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKV 198
+G+D++IVR+ T G Y + + + + R+++ AFE A+K RK V
Sbjct: 123 -ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-RKHV 180
Query: 199 TTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLY 258
+V KAN++++ + + + +V + YP++ +D M LV +P +FDV+V N++
Sbjct: 181 VSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIF 239
Query: 259 GAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDML 318
G I S++ L G GL+ + G VFEP + IAGK IANP A + ++ ML
Sbjct: 240 GDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAILSAAMML 298
Query: 319 EH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
EH G ++ A ++ A+ K + E PDLGG+A + +++
Sbjct: 299 EHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLR 342
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 164/346 (47%), Gaps = 34/346 (9%)
Query: 46 VTMLPGGGIGPEL----------------MSYVKEVFRYAGVPVD-FETVQIDPKSDSND 88
V +LPG GIGPE+ + EVF + G +D F +P +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 89 DLEY----AITSIRRNGVAIKGNIETG------SLDSLWTLKLCRLILRVIAMMILSVRC 138
+ E ++ + +G+ K ETG S D L+ ++ + + L
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 139 RQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKV 198
+G+D++IVR+ T G Y + + + + R+++ AFE A+K RK V
Sbjct: 123 -ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKR-RKHV 180
Query: 199 TTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLY 258
+V KAN++++ + + + +V + YP++ +D M LV +P +FDV+V N++
Sbjct: 181 VSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIF 239
Query: 259 GAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDML 318
G I S++ L G GL+ + G VFEP + IAGK IANP A + ++ ML
Sbjct: 240 GDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAILSAAMML 298
Query: 319 EH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
EH G ++ A ++ A+ K + E PDLGG+A + +++
Sbjct: 299 EHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLR 342
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 164/346 (47%), Gaps = 34/346 (9%)
Query: 46 VTMLPGGGIGPEL----------------MSYVKEVFRYAGVPVD-FETVQIDPKSDSND 88
V +LPG GIGPE+ + EVF + G +D F +P +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 89 DLEY----AITSIRRNGVAIKGNIETG------SLDSLWTLKLCRLILRVIAMMILSVRC 138
+ E ++ + +G+ K ETG S D L+ ++ + + L
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 139 RQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKV 198
+G+D++IVR+ T G Y + + + + R+++ AFE A+K RK V
Sbjct: 123 -ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEVARKR-RKHV 180
Query: 199 TTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLY 258
+V KAN++++ + + + +V + YP++ +D M LV +P +FDV+V N++
Sbjct: 181 VSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIF 239
Query: 259 GAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDML 318
G I S++ L G GL+ + G VFEP + IAGK IANP A + ++ ML
Sbjct: 240 GDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAILSAAMML 298
Query: 319 EH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
EH G ++ A ++ A+ K + E PDLGG+A + +++
Sbjct: 299 EHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLR 342
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 164/346 (47%), Gaps = 34/346 (9%)
Query: 46 VTMLPGGGIGPEL----------------MSYVKEVFRYAGVPVD-FETVQIDPKSDSND 88
V +LPG GIGPE+ + EVF + G +D F +P +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 89 DLEY----AITSIRRNGVAIKGNIETG------SLDSLWTLKLCRLILRVIAMMILSVRC 138
+ E ++ + +G+ K ETG S D L+ ++ + + L
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 139 RQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKV 198
+G+D++IVR+ T G Y + + + + R+++ AFE A+K RK V
Sbjct: 123 -ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-RKHV 180
Query: 199 TTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLY 258
+V KAN++++ + + + +V + YP++ +D M LV +P +FDV+V N++
Sbjct: 181 VSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIF 239
Query: 259 GAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDML 318
G I S++ L G GL+ + G VFEP + IAGK IANP A + ++ ML
Sbjct: 240 GDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAILSAAMML 298
Query: 319 EH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
EH G ++ A ++ A+ K + E PDLGG+A + +++
Sbjct: 299 EHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLR 342
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 164/346 (47%), Gaps = 34/346 (9%)
Query: 46 VTMLPGGGIGPEL----------------MSYVKEVFRYAGVPVD-FETVQIDPKSDSND 88
V +LPG GIGPE+ + EVF + G +D F +P +
Sbjct: 6 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 65
Query: 89 DLEY----AITSIRRNGVAIKGNIETG------SLDSLWTLKLCRLILRVIAMMILSVRC 138
+ E ++ + +G+ K ETG S D L+ ++ + + L
Sbjct: 66 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 125
Query: 139 RQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKV 198
+G+D++IVR+ T G Y + + + + R+++ AFE A+K RK V
Sbjct: 126 -ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-RKHV 183
Query: 199 TTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLY 258
+V KAN++++ + + + +V + YP++ +D M LV +P +FDV+V N++
Sbjct: 184 VSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIF 242
Query: 259 GAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDML 318
G I S++ L G GL+ + G VFEP + IAGK IANP A + ++ ML
Sbjct: 243 GDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAILSAAMML 301
Query: 319 EH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
EH G ++ A ++ A+ K + E PDLGG+A + +++
Sbjct: 302 EHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLR 345
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 164/346 (47%), Gaps = 34/346 (9%)
Query: 46 VTMLPGGGIGPEL----------------MSYVKEVFRYAGVPVD-FETVQIDPKSDSND 88
V +LPG GIGPE+ + EVF + G +D F +P +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 89 DLEY----AITSIRRNGVAIKGNIETG------SLDSLWTLKLCRLILRVIAMMILSVRC 138
+ E ++ + +G+ K ETG S D L+ ++ + + L
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 139 RQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKV 198
+G+D++IVR+ T G Y + + + + R+++ AFE A+K RK V
Sbjct: 123 -ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEGARKR-RKHV 180
Query: 199 TTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLY 258
+V KAN++++ + + + +V + YP++ +D M LV +P +FDV+V N++
Sbjct: 181 VSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIF 239
Query: 259 GAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDML 318
G I S++ L G GL+ + G VFEP + IAGK IANP A + ++ ML
Sbjct: 240 GDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAILSAAMML 298
Query: 319 EH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
EH G ++ A ++ A+ K + E PDLGG+A + +++
Sbjct: 299 EHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLR 342
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 160/335 (47%), Gaps = 34/335 (10%)
Query: 46 VTMLPGGGIGPEL----------------MSYVKEVFRYAGVPVD-FETVQIDPKSDSND 88
V +LPG GIGPE+ + EVF + G +D F +P +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 89 DLEY----AITSIRRNGVAIKGNIETG------SLDSLWTLKLCRLILRVIAMMILSVRC 138
+ E ++ + +G+ K ETG S D L+ ++ + + L
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 139 RQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKV 198
+G+D++IVR+ T G Y + + + + R+++ AFE A+K RK V
Sbjct: 123 -ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKR-RKHV 180
Query: 199 TTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLY 258
+V KAN++++ + + + +V + YP++ +D M LV +P +FDV+V N++
Sbjct: 181 VSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIF 239
Query: 259 GAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDML 318
G I S++ L G GL+ + G VFEP + IAGK IANP A + ++ ML
Sbjct: 240 GDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAILSAAMML 298
Query: 319 EH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTA 352
EH G ++ A ++ A+ K + E PDLGG+A
Sbjct: 299 EHAFGLVELARKVEDAVAKALLETP--PPDLGGSA 331
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 160/335 (47%), Gaps = 34/335 (10%)
Query: 46 VTMLPGGGIGPEL----------------MSYVKEVFRYAGVPVD-FETVQIDPKSDSND 88
V +LPG GIGPE+ + EVF + G +D F +P +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 89 DLEY----AITSIRRNGVAIKGNIETG------SLDSLWTLKLCRLILRVIAMMILSVRC 138
+ E ++ + +G+ K ETG S D L+ ++ + + L
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 139 RQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKV 198
+G+D++IVR+ T G Y + + + + R+++ AFE A+K RK V
Sbjct: 123 -ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKR-RKHV 180
Query: 199 TTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLY 258
+V KAN++++ + + + +V + YP++ +D M LV +P +FDV+V N++
Sbjct: 181 VSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIF 239
Query: 259 GAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDML 318
G I S++ L G GL+ + G VFEP + IAGK IANP A + ++ ML
Sbjct: 240 GDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAILSAAMML 298
Query: 319 EH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTA 352
EH G ++ A ++ A+ K + E PDLGG+A
Sbjct: 299 EHAFGLVELARKVEDAVAKALLETP--PPDLGGSA 331
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 161/337 (47%), Gaps = 34/337 (10%)
Query: 46 VTMLPGGGIGPEL----------------MSYVKEVFRYAGVPVD-FETVQIDPKSDSND 88
V +LPG GIGPE+ + EVF + G +D F +P +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 89 DLEY----AITSIRRNGVAIKGNIETG------SLDSLWTLKLCRLILRVIAMMILSVRC 138
+ E ++ + +G+ K ETG S D L+ ++ + + L
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 139 RQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKV 198
+G+D++IVR+ T G Y + + + + R+++ AFE A+K RK V
Sbjct: 123 -ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKR-RKHV 180
Query: 199 TTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLY 258
+V KAN++++ + + + +V + YP++ +D M LV +P +FDV+V N++
Sbjct: 181 VSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIF 239
Query: 259 GAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDML 318
G I S++ L G GL+ + G VFEP + IAGK IANP A + ++ ML
Sbjct: 240 GDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAILSAAMML 298
Query: 319 EH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATS 354
EH G ++ A ++ A+ K + E PDLGG+A +
Sbjct: 299 EHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGT 333
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 177/362 (48%), Gaps = 57/362 (15%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRY-----------------------AGVPVDFETVQIDP 82
+ +LPG GIGPE+M V + AG P+ ET+ I
Sbjct: 5 LAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICR 64
Query: 83 KSDS-------NDDLEYAITSIRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILS 135
+SD+ ++ S+R + E G +L +K +L +
Sbjct: 65 RSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLK--- 121
Query: 136 VRCRQQGIDIVIVRQNTEGEY--------AMLEHESVDGVVESMKIITAANSYRLSKYAF 187
R R + +D+VIVR+ T G Y E+E VD + + + I R+ + AF
Sbjct: 122 -RERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTREEIE-----RIIEKAF 175
Query: 188 EYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPK 247
+ A+ RKK+ +V KAN+++ S ++ EI+ + AK+YP++E + M++D+T MQL++NP
Sbjct: 176 QLAQ-IRRKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPG 233
Query: 248 QFDVMVMPNLYGAITSNVICGLIGGAGLI-SGKNYGDHYAVFEPGTRNTGTAIAGKNIAN 306
QFDV+V N++G I S+ + G G++ S D + ++EP + IAG+ AN
Sbjct: 234 QFDVIVTENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEP-VHGSAPDIAGQGKAN 292
Query: 307 PIAMLNASVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDL----GGTATSIDVVQNI 361
P+ + ++ ML + G K A+ I+ A++ + +D T DL G ++I++ +
Sbjct: 293 PLGTVLSAALMLRYSFGLEKEAAAIEKAVDDVL-QDGYCTGDLQVANGKVVSTIELTDRL 351
Query: 362 IK 363
I+
Sbjct: 352 IE 353
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 117 bits (294), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 110/358 (30%), Positives = 173/358 (48%), Gaps = 50/358 (13%)
Query: 46 VTMLPGGGIGPELMSYVKEVF-----RYA------------------GVPVDFETVQIDP 82
+ +LPG GIGPE+M+ +V R+A G P+ TV+
Sbjct: 7 IAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCE 66
Query: 83 KSDSNDDLEYAITSIRRNGVAIKGNIETGSLDSLW-------TLKLCRLILRVIAMMILS 135
++D+ L ++ + + E G+L L L+ +L + A L
Sbjct: 67 QADAV--LFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLR 124
Query: 136 VRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYR-----LSKYAFEYA 190
G DI+ VR+ T G Y + + +G + K +R +++ AFE A
Sbjct: 125 ADIAANGFDILCVRELTGGIY-FGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESA 183
Query: 191 KKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFD 250
+K R KVT++ KAN+++ S L+ EI ++A EYP++E M IDN MQL+ +P QFD
Sbjct: 184 RKR-RHKVTSIDKANVLQ-SSILWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFD 241
Query: 251 VMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH-YAVFEPGTRNTGTAIAGKNIANPIA 309
V++ NL+G I S+ + G G++ + + + ++EP + IAGKNIANPIA
Sbjct: 242 VLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAG-GSAPDIAGKNIANPIA 300
Query: 310 MLNASVDMLEHLGHMKHASIIKLAIEKTIN---EDKIHTPDL--GGTATSIDVVQNII 362
+ S+ +L L + A AIE+ IN E+ I T DL G A S D + +II
Sbjct: 301 QI-LSLALL--LRYSLDADDAACAIERAINRALEEGIRTGDLARGAAAVSTDEMGDII 355
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 171/356 (48%), Gaps = 46/356 (12%)
Query: 46 VTMLPGGGIGPELMSYVKEV----------------FRYAGVPVD-----FETVQIDPKS 84
+ +LPG GIGPE+M+ +V + G+ +D ++
Sbjct: 7 IAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCE 66
Query: 85 DSNDDLEYAITSIRRNGVAIKGNIETGSLDSLW-------TLKLCRLILRVIAMMILSVR 137
++ L ++ + + + E G+L L L+ +L + A L
Sbjct: 67 QADAILFGSVGGPKWENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRAD 126
Query: 138 CRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYR-----LSKYAFEYAKK 192
G DI+ VR+ T G Y + + +G + K +R +++ AFE A+K
Sbjct: 127 IAANGFDILCVRELTGGIY-FGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESARK 185
Query: 193 FGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVM 252
R+KVT++ KAN+++ S L+ EI VAK YP++E M IDN MQL+ +P QFDV+
Sbjct: 186 R-RRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVL 243
Query: 253 VMPNLYGAITSNVICGLIGGAGLISGKNYGDH-YAVFEPGTRNTGTAIAGKNIANPIAML 311
+ NL+G I S+ + G G++ + + + ++EP + IAGKNIANPIA +
Sbjct: 244 LCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAG-GSAPDIAGKNIANPIAQI 302
Query: 312 NASVDMLEHLGHMKHASIIKLAIEKTIN---EDKIHTPDL--GGTATSIDVVQNII 362
S+ +L L + A+ AIE+ IN E+ + T DL G A S D + +II
Sbjct: 303 -LSLALL--LRYSLDANDAATAIEQAINRALEEGVRTGDLARGAAAVSTDEMGDII 355
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 116/392 (29%), Positives = 180/392 (45%), Gaps = 70/392 (17%)
Query: 46 VTMLPGGGIGPELM--------SYVKEVFRYAGVPVDFETVQIDPKSDSNDDL--EYAIT 95
V + G G+GPE++ + VK+V+ + V +E + + +L + +
Sbjct: 38 VAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLE 97
Query: 96 SIRRNGVAIKGNIETGSLDSLWTLKLC-RLILRVIAMMILSVRCRQQG--------IDIV 146
IR VA+KG +ET +L + R L + A I VR Q +D+V
Sbjct: 98 GIRLARVALKGPLETPVGTGYRSLNVAIRQALDLYAN-IRPVRYYGQPAPHKYADRVDMV 156
Query: 147 IVRQNTEGEYAMLE--HESVDG------VVES------------MKIITAANSYRLSKYA 186
I R+NTE YA +E H+S + + E +K I+ + RL + A
Sbjct: 157 IFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGISIREDAGIGVKPISRFATRRLMERA 216
Query: 187 FEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKE-------------------YPE 227
E+A + G VT +HK NIMK ++G F+ + +VA E PE
Sbjct: 217 LEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGGVRPE 276
Query: 228 --IEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHY 285
I ND I DN Q+++ P + V+V PNL G S+ L+GG G+ +G N GD
Sbjct: 277 GKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMGDGI 336
Query: 286 AVFEPGTRNTGTAIAGKNIANPIA-MLNASVDMLEHLGHMKHASIIKLAIEKTINEDKI- 343
AV EP T AGK++ NP A +L+AS+ + E +G + SI++ AI K + K+
Sbjct: 337 AVAEP-VHGTAPKYAGKDLINPSAEILSASLLIGEFMGWREVKSIVEYAIRKAVQSKKVT 395
Query: 344 -----HTPDLGGTATSIDVVQNIIKLVQTNDL 370
H P + TS + + +I + DL
Sbjct: 396 QDLARHMPGVQPLRTS-EYTETLIAYIDEADL 426
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 169/334 (50%), Gaps = 44/334 (13%)
Query: 43 RNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQID----PKSDSNDDL------EY 92
R +T+LPG GIGPE++S K V + AG E V+ + P + DL E
Sbjct: 42 RYTITLLPGDGIGPEVVSIAKNVLQQAG---SLEGVEFNFREMPIGGAALDLVGVPLPEE 98
Query: 93 AITSIRRNGVAIKGNI--------------ETG------SLDSLWTLKLCRLILRVIAMM 132
I++ + + + G I E G +L L+ ++ +++
Sbjct: 99 TISAAKESDAVLLGAIGGYKWDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDAS 158
Query: 133 ILSVRCRQQGIDIVIVRQNTEGEY-----AMLEHESVDGVVESMKIITAANSYRLSKYAF 187
L R +G+D+++VR+ T G Y + +E+ + V + ++ A R+++ AF
Sbjct: 159 TLK-REVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAF 217
Query: 188 EYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPK 247
E A+K R K+ +V KAN+++ S L+ + +A EYP++E + M +DN MQLV +PK
Sbjct: 218 ETARKR-RGKLCSVDKANVLEASI-LWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPK 275
Query: 248 QFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH-YAVFEPGTRNTGTAIAGKNIAN 306
QFD +V N++G I S+ + G G++ + D +FEP + IAG++ AN
Sbjct: 276 QFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEP-IHGSAPDIAGQDKAN 334
Query: 307 PIAMLNASVDMLEH-LGHMKHASIIKLAIEKTIN 339
P+A + ++ +L++ LG K A I+ A+ +N
Sbjct: 335 PLATILSAAMLLKYGLGEEKAAKRIEDAVLVALN 368
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 160/344 (46%), Gaps = 32/344 (9%)
Query: 46 VTMLPGGGIGPEL----------------MSYVKEVFRYAGVPVD-FETVQIDPKSDSND 88
V +LPG GIGPE+ + EVF + G +D F +P +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 89 DLEYAITSIRRNGVAIKGNI--ETG------SLDSLWTLKLCRLILRVIAMMILSVRCRQ 140
+ E + G++ E G S D L+ ++ + + L
Sbjct: 63 EAEAVLLGSVGGPKWGTGSVRPEQGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI-A 121
Query: 141 QGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTT 200
+G+D++IVR+ T G Y + + + + R+++ AFE A+K RK V +
Sbjct: 122 RGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-RKHVVS 180
Query: 201 VHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGA 260
V KAN++++ + + + +V + YP++ +D M LV +P +FDV+V N++G
Sbjct: 181 VDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGD 239
Query: 261 ITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH 320
I S++ L G GL+ + G VFEP + IAGK IANP A + ++ MLEH
Sbjct: 240 ILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEH 298
Query: 321 -LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
G ++ A ++ A+ K + E PDLGG+A + +++
Sbjct: 299 AFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLR 340
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2DHT|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2E0C|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E0C|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E5M|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
pdb|2E5M|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
Length = 409
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 120/241 (49%), Gaps = 39/241 (16%)
Query: 141 QGIDIVIVRQNTEGEYAMLEH--------------------ESVDGVVESMKIITAANSY 180
+ +D++I R+NT+ Y +E+ E D +K+++ +
Sbjct: 141 EKVDMIIFRENTDDLYRGIEYPFNSEEAKKIRDFLRKELKVEIEDDTGIGIKVMSKYKTQ 200
Query: 181 RLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVA-KEY-------PEIEH-- 230
R+++ A +YA + RKKVT +HK N+MK ++G F E + +VA KEY EI
Sbjct: 201 RITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGK 260
Query: 231 --------NDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYG 282
ND I DN Q++ P+++D+++ PN+ G S+ LIG G++ G N G
Sbjct: 261 PDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANIG 320
Query: 283 DHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDK 342
D +FE T AGKN+ANP ++ A ML +G + A +I+ AI I + K
Sbjct: 321 DEGGMFE-AIHGTAPKYAGKNVANPTGIIKAGELMLRWMGWNEAADLIEKAINMAIRDKK 379
Query: 343 I 343
+
Sbjct: 380 V 380
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|B Chain B, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|C Chain C, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|D Chain D, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
Length = 364
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 124/246 (50%), Gaps = 17/246 (6%)
Query: 126 LRVIAMMILSVRCRQQG-IDIVIVRQNTEGEYAMLE----HESVDGVVESMKIITAANSY 180
+R+ + ++ R+ G ID V+VR+NTEGEY+ L + + +V I T
Sbjct: 110 VRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIXFENTENEIVIQESIFTRRGVD 169
Query: 181 RLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCM 240
R+ KYAF+ A+K RK VT+ K+N IS + + + A YP + + ID C
Sbjct: 170 RILKYAFDLAEKRERKHVTSATKSNGXAISXPYWDKRTEAXAAHYPHVSWDKQHIDILCA 229
Query: 241 QLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYG---DHYAVFEPGTRNTGT 297
+ V P++FDV+V NL+G I S++ G G+ N + ++FEP +
Sbjct: 230 RFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEP-VHGSAP 288
Query: 298 AIAGKNIANPIAMLNASVDMLEHLG------HMKHASIIKLAIEKTINEDKIHTPDLGGT 351
I GKNIANPIA + + LE LG H + AIE+ I + + TPD GGT
Sbjct: 289 DIFGKNIANPIAXIWSGALXLEFLGQGDERYQRAHDDXLN-AIERVIADGSV-TPDXGGT 346
Query: 352 ATSIDV 357
++ V
Sbjct: 347 LSTQQV 352
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 117/210 (55%), Gaps = 19/210 (9%)
Query: 141 QGIDIVIVRQNTEGEY---------AMLEHESVDGVVESMKIITAANSYRLSKYAFEYAK 191
+G D++ VR+ T G Y E+ D + S + I+ R+++ AFE A+
Sbjct: 139 RGFDVLCVRELTGGIYFGKPKGRQGEGESEEAFDTMRYSRREIS-----RIARIAFEAAR 193
Query: 192 KFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDV 251
RKKVT+V KAN++ S L+ ++ +VA ++P++E + IDN MQL+ P +FDV
Sbjct: 194 GR-RKKVTSVDKANVLACSV-LWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPDEFDV 251
Query: 252 MVMPNLYGAITSNVICGLIGGAGLISGKNYGD-HYAVFEPGTRNTGTAIAGKNIANPIAM 310
M+ NL+G I S+ I L G GL+S + + +FEP + IAGK IANPIA
Sbjct: 252 MLCSNLFGDILSDEIAMLTGSMGLLSSASMNSTGFGLFEPAG-GSAPDIAGKGIANPIAQ 310
Query: 311 LNASVDMLEH-LGHMKHASIIKLAIEKTIN 339
+ ++ ML H L + AS I+ A+ K +N
Sbjct: 311 ILSAALMLRHSLKQEEAASAIERAVTKALN 340
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 119/211 (56%), Gaps = 19/211 (9%)
Query: 140 QQGIDIVIVRQNTEGEY---------AMLEHESVDGVVESMKIITAANSYRLSKYAFEYA 190
++G DI+ VR+ T G Y E+ D + S K I R++K AFE A
Sbjct: 138 EKGFDILCVRELTGGIYFGKPKGRQGEGENEEAFDTMRYSRKEIR-----RIAKIAFESA 192
Query: 191 KKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFD 250
+ RKKVT+V KAN++ S L+ E+ +VAK+YP++E + IDN MQL+ P +FD
Sbjct: 193 QGR-RKKVTSVDKANVLACSV-LWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFD 250
Query: 251 VMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH-YAVFEPGTRNTGTAIAGKNIANPIA 309
VM+ NL+G I S+ I L G GL++ + + ++EP + IAG+ IANP+A
Sbjct: 251 VMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPAG-GSAPDIAGQGIANPVA 309
Query: 310 MLNASVDMLEHLGHMKHASI-IKLAIEKTIN 339
+ ++ +L H ++ A++ I+ A+ K +N
Sbjct: 310 QILSAALLLRHSLKLEDAALAIEAAVSKALN 340
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|B Chain B, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|C Chain C, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|D Chain D, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|2G4O|A Chain A, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|B Chain B, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|C Chain C, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|D Chain D, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
Length = 337
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 12/218 (5%)
Query: 142 GIDIVIVRQNTEGEY----AMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKK 197
GID V+VR+ TEG Y + + + V + + TA R+ AFE A++ RK
Sbjct: 115 GIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVADAFERARRR-RKH 173
Query: 198 VTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNL 257
+T VHK N++ + GL+L +V + YP++E +D + ++++P +FDV+V NL
Sbjct: 174 LTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNL 233
Query: 258 YGAITSNVICGLIGGAGLISGKNYGDHYA---VFEPGTRNTGTAIAGKNIANPIAMLNAS 314
+G I +++ + GG GL + N A +FEP + IAG+ IA+P A + +
Sbjct: 234 FGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEP-VHGSAPDIAGQGIADPTAAIMSV 292
Query: 315 VDMLEHLGHMKHASIIKLAIE---KTINEDKIHTPDLG 349
+L HLG A+ + A+E T +++ T D+G
Sbjct: 293 ALLLSHLGEHDAAARVDRAVEAHLATRGSERLATSDVG 330
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 120/212 (56%), Gaps = 19/212 (8%)
Query: 140 QQGIDIVIVRQNTEGEY---------AMLEHESVDGVVESMKIITAANSYRLSKYAFEYA 190
++G DI+ VR+ T G Y E+ D + S K I R++K AFE A
Sbjct: 138 EKGFDILCVRELTGGIYFGKPKGRQGEGENEEAFDTMRYSRKEIR-----RIAKIAFESA 192
Query: 191 KKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFD 250
+ RKKVT+V KAN++ S L+ E+ +VAK+YP++E + IDN MQL+ P +FD
Sbjct: 193 QGR-RKKVTSVDKANVLACSV-LWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFD 250
Query: 251 VMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH-YAVFEPGTRNTGTAIAGKNIANPIA 309
VM+ NL+G I S+ I L G GL++ + + ++EP + IAG+ IANP+A
Sbjct: 251 VMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPAG-GSAPDIAGQGIANPVA 309
Query: 310 MLNASVDMLEHLGHMKHASI-IKLAIEKTINE 340
+ ++ +L H ++ A++ I+ A+ K +++
Sbjct: 310 QILSAALLLRHSLKLEDAALAIEAAVSKALSD 341
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 158/358 (44%), Gaps = 58/358 (16%)
Query: 46 VTMLPGGGIGPEL----------------MSYVKEVFRYAGVPVDF-------------- 75
V +LPG GIGPE+ + EVF + G +D
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 76 --ETVQID----PKSDSNDD---LEYAITSIRRNGVAIKGNIETGSLDSLWTLKLCRLIL 126
E V + PK D N E + SIR+ LD L+ ++
Sbjct: 63 EAEAVLLGSVGGPKWDQNPRELRPEKGLLSIRKQ------------LDLFANLRPVKVFE 110
Query: 127 RVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYA 186
+ L + +D VIVR+ T G Y + + + + R+++ A
Sbjct: 111 SLSDASPLK-KEYIDNVDFVIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVA 169
Query: 187 FEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNP 246
FE A+K RK V +V KAN++++ + + + +V + YP++ +D M LV +P
Sbjct: 170 FEAARKR-RKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSP 227
Query: 247 KQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIAN 306
+FDV+V N++G I S++ L G GL+ + G VFEP + IAGK IAN
Sbjct: 228 ARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIAN 286
Query: 307 PIAMLNASVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
P A + ++ MLEH G ++ A ++ A+ K + E PDLGG+A + +++
Sbjct: 287 PTAAILSAAMMLEHAFGLVELARKVEDAVAKALLE--TPPPDLGGSAGTEAFTATVLR 342
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 136/304 (44%), Gaps = 58/304 (19%)
Query: 88 DDLEYAITSIRRNGVAIKGNIETGSLDSLWTLKLC-RLILRVIAMM--------ILSVRC 138
DD AI R VA+KG + T +L + R +L + A + + S
Sbjct: 82 DDTLNAIKEFR---VALKGPLTTPVGGGYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIK 138
Query: 139 RQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKII----------------------TA 176
+ ++ VI R+NTE YA +E G E++K+I +
Sbjct: 139 HPEKVNFVIFRENTEDVYAGIEWPR--GSEEALKLIRFLKNEFGVTIREDSGIGIKPISE 196
Query: 177 ANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK----EY------- 225
+ RL + A YA + RK VT VHK NIMK ++G F + +VAK EY
Sbjct: 197 FATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDEL 256
Query: 226 --------PE--IEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGL 275
PE I D I DN Q+++ ++DV+ +PNL G S+ LIGG G+
Sbjct: 257 WDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGI 316
Query: 276 ISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIE 335
G N GD VFEP + AG+N NP A + M E++G + +IK A+E
Sbjct: 317 APGSNIGDGIGVFEP-VHGSAPKYAGQNKVNPTAEILTGALMFEYIGWKDASEMIKKAVE 375
Query: 336 KTIN 339
TI+
Sbjct: 376 MTIS 379
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 97 IRRNGVAIKGNIET---GSLDSL-------WTLKLCRLILRVIAMMILSVRCRQQGIDIV 146
IR VAIKG + T G + SL L +C +R V+ + D+V
Sbjct: 92 IREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVK-HPELTDMV 150
Query: 147 IVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITAANSYRLS 183
I R+N+E YA +E ++ E +K ++ + RL
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPMSEEGTKRLV 210
Query: 184 KYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY------------------ 225
+ A EYA R VT VHK NIMK ++G F + ++A+E
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 226 --PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGD 283
EI D+I D Q++ P ++DV+ NL G S+ + +GG G+ G N GD
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 284 HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTIN 339
YA+FE T T IAG++ ANP +++ ++ ML H+G + A +I +E IN
Sbjct: 331 EYALFE-ATHGTAPDIAGQDKANPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN 385
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 144/323 (44%), Gaps = 73/323 (22%)
Query: 94 ITSIRRNGVAIKGNIET---GSLDSL-------WTLKLCRLILRVIAMMILSVRCRQQGI 143
+ +IR VAIKG +ET G + SL L +C +R +R ++ +
Sbjct: 89 MAAIREYKVAIKGPLETPVGGGIRSLNVAMRQDLDLYVCLRPVRYFEGTPSPMRHPEK-V 147
Query: 144 DIVIVRQNTEGEYAMLEHESVDGVVESMKII-------------------------TAAN 178
D+VI R+N+E YA +E + G E+ KII +
Sbjct: 148 DMVIFRENSEDIYAGIEWPA--GSPEAEKIIRFLREEMGVTKIRFPDSSAIGIKPVSTEG 205
Query: 179 SYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLE---------------------- 216
S RL + +YA + G+ V+ VHK NIMK ++G F +
Sbjct: 206 SERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKAA 265
Query: 217 ISR---KVAKEYPEIEH--------NDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNV 265
IS+ K A + E + D+I DN Q++ P+ + V+ NL G S+
Sbjct: 266 ISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDA 325
Query: 266 ICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMK 325
+ +GG G+ G N D +A+FE T T IAG+ ANP +++ ++V MLEHLG +
Sbjct: 326 LAAEVGGIGMAPGANLSDTHAIFE-ATHGTAPDIAGQGKANPSSLILSAVMMLEHLGWGE 384
Query: 326 HASIIKLAIEKTINEDKIHTPDL 348
A I A+ TI ++ T DL
Sbjct: 385 AAQAIVAAMNATIAAGEV-TGDL 406
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 117/218 (53%), Gaps = 9/218 (4%)
Query: 143 IDIVIVRQNTEGEYAMLEH--ESVDGVVESMKIITAANS--YRLSKYAFEYAKKFGRKKV 198
+DI++VR+ T Y E +DG + R++ AF A+ RK++
Sbjct: 127 VDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAFRAAQGR-RKQL 185
Query: 199 TTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLY 258
+V KAN+++ + L+ E+ +VA++YP++ + M +DN MQL+ P QFDV++ N++
Sbjct: 186 CSVDKANVLETTR-LWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMF 244
Query: 259 GAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDML 318
G I S+ L G G++ + G+ A++EP + IAG++ ANP+A + + ML
Sbjct: 245 GDILSDEASQLTGSIGMLPSASLGEGRAMYEP-IHGSAPDIAGQDKANPLATILSVAMML 303
Query: 319 EH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSI 355
H L A ++ A+++ +++ + T D+ T +
Sbjct: 304 RHSLNAEPWAQRVEAAVQRVLDQ-GLRTADIAAPGTPV 340
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 129/296 (43%), Gaps = 55/296 (18%)
Query: 97 IRRNGVAIKGNIET---GSLDSL-------WTLKLCRLILRVIAMMILSVRCRQQGIDIV 146
IR VAIKG + T G + SL L +C +R V+ + D+V
Sbjct: 92 IREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVK-HPELTDMV 150
Query: 147 IVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITAANSYRLS 183
I R+N+E YA +E ++ E +K + + RL
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 184 KYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY------------------ 225
+ A EYA R VT VHK NIMK ++G F + ++A+E
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 226 --PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGD 283
EI D+I D Q++ P ++DV+ NL G S+ + +GG G+ G N GD
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 284 HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTIN 339
A+FE T T A AG++ NP +++ ++ ML H+G + A +I +E IN
Sbjct: 331 ECALFE-ATHGTAPAYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN 385
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 128/296 (43%), Gaps = 55/296 (18%)
Query: 97 IRRNGVAIKGNIET---GSLDSLWT-------LKLCRLILRVIAMMILSVRCRQQGIDIV 146
IR VAIKG + T G + SL L +C +R V+ + D+V
Sbjct: 92 IREYRVAIKGPLTTPVGGGIRSLLVALRQELDLYICLRPVRYYQGTPSPVK-HPELTDMV 150
Query: 147 IVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITAANSYRLS 183
I R+N+E YA +E ++ E +K + + RL
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPDHCGIGIKPCSEEGTKRLV 210
Query: 184 KYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY------------------ 225
+ A EYA R VT VHK NIMK ++G F + ++A+E
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 226 --PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGD 283
EI D+I D Q++ P ++DV+ NL G S+ + +GG G+ G N GD
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 284 HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTIN 339
A+FE T T AG++ NP +++ ++ ML H+G + A +I +E IN
Sbjct: 331 ECALFE-ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN 385
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 128/296 (43%), Gaps = 55/296 (18%)
Query: 97 IRRNGVAIKGNIET---GSLDSL-------WTLKLCRLILRVIAMMILSVRCRQQGIDIV 146
IR VAIKG + T G + SL L +C +R V+ + D+V
Sbjct: 90 IREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVK-HPELTDMV 148
Query: 147 IVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITAANSYRLS 183
I R+N+E YA +E ++ E +K + + RL
Sbjct: 149 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 208
Query: 184 KYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY------------------ 225
+ A EYA R VT VHK NIMK ++G F + ++A+E
Sbjct: 209 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 268
Query: 226 --PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGD 283
EI D+I D Q++ P ++DV+ NL G S+ + +GG G+ G N GD
Sbjct: 269 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 328
Query: 284 HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTIN 339
A+FE T T AG++ NP +++ ++ ML H+G + A +I +E IN
Sbjct: 329 ECALFE-ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN 383
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 128/296 (43%), Gaps = 55/296 (18%)
Query: 97 IRRNGVAIKGNIET---GSLDSL-------WTLKLCRLILRVIAMMILSVRCRQQGIDIV 146
IR VAIKG + T G + SL L +C +R V+ + D+V
Sbjct: 92 IREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVK-HPELTDMV 150
Query: 147 IVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITAANSYRLS 183
I R+N+E YA +E ++ E +K + + RL
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 184 KYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY------------------ 225
+ A EYA R VT VHK NIMK ++G F + ++A+E
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 226 --PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGD 283
EI D+I D Q++ P ++DV+ NL G S+ + +GG G+ G N GD
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 284 HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTIN 339
A+FE T T AG++ NP +++ ++ ML H+G + A +I +E IN
Sbjct: 331 ECALFE-ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN 385
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 44/239 (18%)
Query: 144 DIVIVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITAANSY 180
D+VI R+N+E YA +E ++ E +K + +
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTK 207
Query: 181 RLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY--------------- 225
RL + A EYA R VT VHK NIMK ++G F + ++A+E
Sbjct: 208 RLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVK 267
Query: 226 -----PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKN 280
EI D+I D Q++ P ++DV+ NL G S+ + +GG G+ G N
Sbjct: 268 NPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGAN 327
Query: 281 YGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTIN 339
GD A+FE T T AG++ NP +++ ++ ML H+G + A +I +E IN
Sbjct: 328 IGDECALFE-ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN 385
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 44/239 (18%)
Query: 144 DIVIVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITAANSY 180
D+VI R+N+E YA +E ++ E +K + +
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTK 207
Query: 181 RLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY--------------- 225
RL + A EYA R VT VHK NIMK ++G F + ++A+E
Sbjct: 208 RLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVK 267
Query: 226 -----PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKN 280
EI D+I D Q++ P ++DV+ NL G S+ + +GG G+ G N
Sbjct: 268 NPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGAN 327
Query: 281 YGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTIN 339
GD A+FE T T AG++ NP +++ ++ ML H+G + A +I +E IN
Sbjct: 328 IGDECALFE-ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN 385
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 44/239 (18%)
Query: 144 DIVIVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITAANSY 180
D+VI R+N+E YA +E ++ E +K + +
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPDHCGIGIKPCSEEGTK 207
Query: 181 RLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY--------------- 225
RL + A EYA R VT VHK NIMK ++G F + ++A+E
Sbjct: 208 RLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVK 267
Query: 226 -----PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKN 280
EI D+I D Q++ P ++DV+ NL G S+ + +GG G+ G N
Sbjct: 268 NPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGAN 327
Query: 281 YGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTIN 339
GD A+FE T T AG++ NP +++ ++ ML H+G + A +I +E IN
Sbjct: 328 IGDECALFE-ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN 385
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 44/239 (18%)
Query: 144 DIVIVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITAANSY 180
D+VI R+N+E YA +E ++ E +K + +
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTK 207
Query: 181 RLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY--------------- 225
RL + A EYA R VT VHK NIMK ++G F + ++A+E
Sbjct: 208 RLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVK 267
Query: 226 -----PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKN 280
EI D+I D Q++ P ++DV+ NL G S+ + +GG G+ G N
Sbjct: 268 NPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGAN 327
Query: 281 YGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTIN 339
GD A+FE T T AG++ NP +++ ++ ML H+G + A +I +E IN
Sbjct: 328 IGDECALFE-ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN 385
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 44/239 (18%)
Query: 144 DIVIVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITAANSY 180
D+VI R+N+E YA +E ++ E +K + +
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTK 207
Query: 181 RLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY--------------- 225
RL + A EYA R VT VHK NIMK ++G F + ++A+E
Sbjct: 208 RLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVK 267
Query: 226 -----PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKN 280
EI D+I D Q++ P ++DV+ NL G S+ + +GG G+ G N
Sbjct: 268 NPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGAN 327
Query: 281 YGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTIN 339
GD A+FE T T AG++ NP +++ ++ ML H+G + A +I +E IN
Sbjct: 328 IGDECALFE-ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN 385
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 117/258 (45%), Gaps = 59/258 (22%)
Query: 139 RQQGIDIVIVRQNTEGEYAMLEH----ESVDGVVE-------------------SMKIIT 175
R + D+VI R+NTE YA +E+ E V ++ +K ++
Sbjct: 134 RPEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVS 193
Query: 176 AANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVA-KEY--------- 225
+ RL + A +YA + GRK VT VHK NIMK ++G F ++A KEY
Sbjct: 194 EEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQ 253
Query: 226 -----------------PEIEH------NDMIIDNTCMQLVSNPKQFDVMVMPNLYGAIT 262
E E D I D Q+++ P +FDV+ NL G
Sbjct: 254 YDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYI 313
Query: 263 SNVICGLIGGAGLISGK--NYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH 320
S+ + +GG G+ G NY +A+FE T T AG + NP +++ + V +LEH
Sbjct: 314 SDALAAQVGGIGIAPGANINYETGHAIFE-ATHGTAPKYAGLDKVNPSSVILSGVLLLEH 372
Query: 321 LGHMKHASIIKLAIEKTI 338
LG + A ++ ++EKTI
Sbjct: 373 LGWNEAADLVIKSMEKTI 390
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 133/295 (45%), Gaps = 55/295 (18%)
Query: 102 VAIKGNIET---GSLDSL-------WTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQN 151
V+IKG + T G + SL L +C ++ + VR ++ ++VI R+N
Sbjct: 107 VSIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPIQYFKGVPSPVREPEK-TNMVIFREN 165
Query: 152 TEGEYAMLEH----ESVDGVVE-------------------SMKIITAANSYRLSKYAFE 188
+E YA +E E V++ +K ++ + RL + A +
Sbjct: 166 SEDIYAGIEWAAESEQAKKVIKFLQEEMGVKKIRFPQTSGIGIKPVSKEGTERLVRKAIQ 225
Query: 189 YAKKFGRKKVTTVHKANIMKISDGLFLEISRKVA-KEYP-------------------EI 228
YA RK VT VHK NIMK ++G F + +A KE+ EI
Sbjct: 226 YAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEI 285
Query: 229 EHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVF 288
D I D Q++ P ++DV+ NL G S+ + +GG G+ G N D A+F
Sbjct: 286 VVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMF 345
Query: 289 EPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKI 343
E T T AGK+ NP + + ++ ML HLG + A +I A+EK+I + ++
Sbjct: 346 E-ATHGTAPKYAGKDYVNPGSEILSAEMMLRHLGWTEAADVIISAMEKSIKQKRV 399
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 128/296 (43%), Gaps = 55/296 (18%)
Query: 97 IRRNGVAIKGNIET---GSLDSL-------WTLKLCRLILRVIAMMILSVRCRQQGIDIV 146
IR VAIKG + T G + SL L +C +R V+ + D+V
Sbjct: 92 IREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVK-HPELTDMV 150
Query: 147 IVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITAANSYRLS 183
I R+N+E +A +E ++ E +K + + RL
Sbjct: 151 IFRENSEDIFAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 184 KYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY------------------ 225
+ A EYA R VT VHK NIMK ++G F + ++A+E
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 226 --PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGD 283
EI D+I D Q++ P ++DV+ NL G S+ + +GG G+ G N GD
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 284 HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTIN 339
A+FE T T AG++ NP +++ ++ ML H+G + A +I +E IN
Sbjct: 331 ECALFE-ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN 385
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 165/362 (45%), Gaps = 62/362 (17%)
Query: 46 VTMLPGGGIGPEL-------MSYVKEVFRYAGVPVDFETVQID--PKSDSNDDLEYAITS 96
+ +LPG GIGPE+ ++ + E F PV + P D+ L +
Sbjct: 11 IAVLPGDGIGPEIVNEAVKVLNALDEKFELEHAPVGGAGYEASGHPLPDATLALAKEADA 70
Query: 97 IRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVR---CRQQ------------ 141
I V G+ + SL+ + L LR + + R C Q
Sbjct: 71 ILFGAV---GDWKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPELV 127
Query: 142 -GIDIVIVRQ---------------NTEGEYAMLEHESVDGVVESMKIITAANSYRLSKY 185
G+DI+IVR+ +G +A E E D + S + R++
Sbjct: 128 AGLDILIVRELNGDIYFGQPRGVRAAPDGPFAG-EREGFDTMRYSEPEVR-----RIAHV 181
Query: 186 AFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSN 245
AF+ A+K KK+ +V K+N+++ S + ++ V+KEY ++E + M +DN MQL
Sbjct: 182 AFQAAQKRA-KKLLSVDKSNVLETSQ-FWRDVMIDVSKEYADVELSHMYVDNAAMQLAKA 239
Query: 246 PKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYG-DHYAVFEPGTRNTGTAIAGKNI 304
PKQFDV+V N++G I S+ L G G++ + ++ ++EP + + IAGK I
Sbjct: 240 PKQFDVIVTGNMFGDILSDEASMLTGSIGMLPSASLDKNNKGLYEP-SHGSAPDIAGKGI 298
Query: 305 ANPIA-MLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLG-------GTATSID 356
ANP+A +L+A++ + L + A I+ A+ KT+ E T D+ GTA D
Sbjct: 299 ANPLATILSAAMLLRYSLNRAEQADRIERAV-KTVLEQGYRTGDIATPGCRQVGTAAMGD 357
Query: 357 VV 358
V
Sbjct: 358 AV 359
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 127/296 (42%), Gaps = 55/296 (18%)
Query: 97 IRRNGVAIKGNIET---GSLDSL-------WTLKLCRLILRVIAMMILSVRCRQQGIDIV 146
IR VAIKG + T G + SL L +C +R V+ + D+V
Sbjct: 92 IREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVK-HPELTDMV 150
Query: 147 IVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITAANSYRLS 183
I R+N+E YA +E ++ E +K + + RL
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 184 KYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY------------------ 225
+ A EYA R VT VH NIMK ++G F + ++A+E
Sbjct: 211 RAAIEYAIANDRDSVTLVHMGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 226 --PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGD 283
EI D+I D Q++ P ++DV+ NL G S+ + +GG G+ G N GD
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 284 HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTIN 339
A+FE T T AG++ NP +++ ++ ML H+G + A +I +E IN
Sbjct: 331 ECALFE-ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN 385
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 177/358 (49%), Gaps = 41/358 (11%)
Query: 46 VTMLPGGGIGP-------ELMSYVKEVFRYA----------------GVPVDFETVQIDP 82
V +L G GIGP ++++++ + + ++ GV + ET+++
Sbjct: 9 VAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCE 68
Query: 83 KSDSNDDLEYAITSIRRNGVAIKGNIETGSLDSL-------WTLKLCRLILRVIAMMILS 135
+SD+ L ++ + + + I E SL L L+ C++ + L
Sbjct: 69 QSDAI--LFGSVGGPKWDNLPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASPLK 126
Query: 136 VRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGR 195
Q+G+DI+ VR+ T G Y + + ++ +I T R+++ AFE A+ +
Sbjct: 127 NEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDT-EIYTKKEIERIARIAFESAR-IRK 184
Query: 196 KKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMP 255
KKV + KAN++ S L+ E+ VAK+Y +I M +DN MQ+V NP FDVM+
Sbjct: 185 KKVHLIDKANVLA-SSILWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFDVMLCS 243
Query: 256 NLYGAITSNVICGLIGGAGLISGKNYGDH-YAVFEPGTRNTGTAIAGKNIANPIAMLNAS 314
NL+G I S+ + + G GL+S + D + ++EP + IA NIANPIA + ++
Sbjct: 244 NLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEPAG-GSAPDIAHLNIANPIAQILSA 302
Query: 315 VDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTA--TSIDVVQNIIKLVQTND 369
ML++ + A I+ AI + + K+ T DL + + ++ I+++++ ND
Sbjct: 303 ALMLKYSFKEEQAAQDIENAISLALAQGKM-TKDLNAKSYLNTDEMGDCILEILKEND 359
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 172/358 (48%), Gaps = 41/358 (11%)
Query: 46 VTMLPGGGIGP-------ELMSYVKEVFRYA----------------GVPVDFETVQIDP 82
V +L G GIGP ++++++ + + ++ GV + ET+++
Sbjct: 9 VAVLAGDGIGPLVXKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCE 68
Query: 83 KSDSNDDLEYAITSIRRNGVAIKGNIETGSLDSL-------WTLKLCRLILRVIAMMILS 135
+SD+ L ++ + + + I E SL L L+ C++ + L
Sbjct: 69 QSDAI--LFGSVGGPKWDNLPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASPLK 126
Query: 136 VRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGR 195
Q+G+DI+ VR+ T G Y + + ++ +I T R+++ AFE A+ +
Sbjct: 127 NEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDT-EIYTKKEIERIARIAFESAR-IRK 184
Query: 196 KKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMP 255
KKV + KAN++ S L+ E+ VAK+Y +I +DN Q+V NP FDV +
Sbjct: 185 KKVHLIDKANVLA-SSILWREVVANVAKDYQDINLEYXYVDNAAXQIVKNPSIFDVXLCS 243
Query: 256 NLYGAITSNVICGLIGGAGLISGKNYGDH-YAVFEPGTRNTGTAIAGKNIANPIA-MLNA 313
NL+G I S+ + + G GL+S + D + ++EP + IA NIANPIA +L+A
Sbjct: 244 NLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEPAG-GSAPDIAHLNIANPIAQILSA 302
Query: 314 SVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTA--TSIDVVQNIIKLVQTND 369
++ + + A I+ AI + + K T DL + + + I+++++ ND
Sbjct: 303 ALXLKYSFKEEQAAQDIENAISLALAQGK-XTKDLNAKSYLNTDEXGDCILEILKEND 359
>pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
pdb|1CM5|B Chain B, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
Length = 759
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 16/99 (16%)
Query: 198 VTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSN------------ 245
++ + A + I D L I ++ EYP+ +ND +D+ + LV
Sbjct: 536 LSAIKYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYR 595
Query: 246 ---PKQFDVMVMPN-LYGAITSNVICGLIGGAGLISGKN 280
P Q + + N +YG T N G GA G N
Sbjct: 596 DAIPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGAN 634
>pdb|2PFL|A Chain A, Crystal Structure Of Pfl From E.Coli
pdb|2PFL|B Chain B, Crystal Structure Of Pfl From E.Coli
pdb|3PFL|A Chain A, Crystal Structure Of Pfl From E.coli In Complex With
Substrate Analogue Oxamate
pdb|3PFL|B Chain B, Crystal Structure Of Pfl From E.coli In Complex With
Substrate Analogue Oxamate
pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
And Coa
pdb|1H17|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Coa And
The Substrate Analog Oxamate
pdb|1H18|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1H18|B Chain B, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1MZO|A Chain A, Crystal Structure Of Pyruvate Formate-Lyase With Pyruvate
pdb|1MZO|B Chain B, Crystal Structure Of Pyruvate Formate-Lyase With Pyruvate
Length = 759
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 16/99 (16%)
Query: 198 VTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSN------------ 245
++ + A + I D L I ++ EYP+ +ND +D+ + LV
Sbjct: 536 LSAIKYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYR 595
Query: 246 ---PKQFDVMVMPN-LYGAITSNVICGLIGGAGLISGKN 280
P Q + + N +YG T N G GA G N
Sbjct: 596 DAIPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGAN 634
>pdb|3DEB|A Chain A, Crystal Structure Of Apo Form (Zinc Removed) Of The
Botulinum Neurotoxin Type C Light Chain
Length = 450
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 159 LEHESVD---GVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFL 215
E +++D + + + IT AN +KY EY +K RK V + + ++ F+
Sbjct: 309 FEEKALDYYRSIAKRLNSITTANPSSFNKYIGEYKQKLIRKYRFVVESSGEVTVNRNKFV 368
Query: 216 EISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVI 266
E+ ++ + + E + + V N K + + N+Y +T+N++
Sbjct: 369 ELYNELTQIFTEFNY-------AKIYNVQNRK----IYLSNVYTPVTANIL 408
>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|B Chain B, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|C Chain C, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|D Chain D, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
Length = 406
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 50 PGGGI---GPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKG 106
PG I GP Y V Y G PV++ T++ + DD+ IT + I
Sbjct: 124 PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINP 183
Query: 107 NIETGSLDSLWTLK 120
N TG+L TL+
Sbjct: 184 NNPTGALYDKKTLE 197
>pdb|2QN0|A Chain A, Structure Of Botulinum Neurotoxin Serotype C1 Light Chain
Protease
Length = 430
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 159 LEHESVD---GVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFL 215
E +++D + + + IT AN +KY EY +K RK V + + ++ F+
Sbjct: 289 FEEKALDYYRSIAKRLNSITTANPSSFNKYIGEYKQKLIRKYRFVVESSGEVTVNRNKFV 348
Query: 216 EISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVI 266
E+ ++ + + E + + V N K + + N+Y +T+N++
Sbjct: 349 ELYNELTQIFTEFNY-------AKIYNVQNRK----IYLSNVYTPVTANIL 388
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 52 GGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKG 106
I P + YV E P+ +T+Q D +D L TSI + V I+G
Sbjct: 188 ANIDPFVEQYVCEKLGLKAAPISTQTLQRDRHADYMATLALIATSIEKFAVEIRG 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,822,862
Number of Sequences: 62578
Number of extensions: 442977
Number of successful extensions: 1270
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 86
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)