Query psy559
Match_columns 376
No_of_seqs 150 out of 1336
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 21:25:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0473 LeuB Isocitrate/isopro 100.0 2E-114 4E-119 843.0 32.0 324 42-367 2-347 (348)
2 PRK08997 isocitrate dehydrogen 100.0 5E-110 1E-114 820.6 34.5 320 44-365 3-334 (334)
3 PLN00123 isocitrate dehydrogen 100.0 2E-109 5E-114 819.8 38.4 347 2-365 2-359 (360)
4 PLN00118 isocitrate dehydrogen 100.0 1E-109 2E-114 826.2 34.6 322 42-365 40-372 (372)
5 PRK14025 multifunctional 3-iso 100.0 3E-109 8E-114 813.1 34.0 317 44-365 2-330 (330)
6 PRK08194 tartrate dehydrogenas 100.0 2E-107 5E-112 806.7 33.4 322 42-367 2-351 (352)
7 TIGR00175 mito_nad_idh isocitr 100.0 7E-107 2E-111 799.7 35.6 324 41-365 1-333 (333)
8 KOG0785|consensus 100.0 1E-107 2E-112 778.2 27.0 322 42-365 34-365 (365)
9 TIGR02089 TTC tartrate dehydro 100.0 9E-107 2E-111 803.4 32.9 320 42-365 2-352 (352)
10 PRK09222 isocitrate dehydrogen 100.0 3E-106 5E-111 821.3 34.3 323 42-367 3-343 (482)
11 TIGR02924 ICDH_alpha isocitrat 100.0 4E-106 9E-111 817.4 33.1 320 45-367 2-339 (473)
12 PRK03437 3-isopropylmalate deh 100.0 2E-105 4E-110 790.9 33.1 316 42-365 3-344 (344)
13 PLN02329 3-isopropylmalate deh 100.0 3E-105 6E-110 800.9 32.8 320 42-366 45-402 (409)
14 TIGR00169 leuB 3-isopropylmala 100.0 3E-104 7E-109 784.4 33.0 316 45-365 1-349 (349)
15 PRK00772 3-isopropylmalate deh 100.0 9E-103 2E-107 775.6 33.3 319 43-367 2-357 (358)
16 PRK06451 isocitrate dehydrogen 100.0 1E-102 2E-107 785.0 33.5 320 42-365 23-408 (412)
17 TIGR02088 LEU3_arch isopropylm 100.0 4E-102 8E-107 762.3 32.6 311 46-362 1-322 (322)
18 PRK07006 isocitrate dehydrogen 100.0 1E-101 2E-106 778.6 34.0 320 42-365 19-409 (409)
19 KOG0784|consensus 100.0 1E-101 3E-106 744.4 30.4 344 17-367 22-374 (375)
20 TIGR00183 prok_nadp_idh isocit 100.0 6E-101 1E-105 776.1 32.8 317 46-365 29-416 (416)
21 PRK07362 isocitrate dehydrogen 100.0 1E-100 2E-105 770.7 32.0 316 46-364 31-473 (474)
22 PF00180 Iso_dh: Isocitrate/is 100.0 2E-100 5E-105 759.4 21.9 313 45-361 1-348 (348)
23 PRK08299 isocitrate dehydrogen 100.0 8.3E-93 1.8E-97 709.6 32.3 315 43-367 7-400 (402)
24 PLN00103 isocitrate dehydrogen 100.0 1.5E-89 3.3E-94 687.5 32.6 316 44-367 10-408 (410)
25 TIGR00127 nadp_idh_euk isocitr 100.0 1.5E-84 3.1E-89 650.8 31.6 315 43-367 6-405 (409)
26 PTZ00435 isocitrate dehydrogen 100.0 6.6E-84 1.4E-88 646.7 32.2 315 43-367 9-408 (413)
27 KOG0786|consensus 100.0 2.5E-83 5.4E-88 598.4 23.7 322 42-367 3-360 (363)
28 PLN03065 isocitrate dehydrogen 100.0 4.7E-82 1E-86 640.4 33.4 317 43-368 77-476 (483)
29 COG0538 Icd Isocitrate dehydro 100.0 2.2E-76 4.7E-81 577.9 28.7 321 43-366 18-407 (407)
30 PLN00096 isocitrate dehydrogen 100.0 3E-67 6.5E-72 520.7 30.1 307 48-365 3-393 (393)
31 KOG1526|consensus 100.0 5.6E-31 1.2E-35 252.0 21.6 318 43-369 18-417 (422)
32 PF03971 IDH: Monomeric isocit 97.1 0.0096 2.1E-07 63.1 14.3 188 160-350 443-649 (735)
33 TIGR00178 monomer_idh isocitra 96.8 0.02 4.3E-07 60.8 13.6 183 161-349 448-652 (741)
34 COG2838 Icd Monomeric isocitra 96.4 0.062 1.3E-06 56.2 13.4 202 169-373 458-685 (744)
35 PRK03371 pdxA 4-hydroxythreoni 94.4 0.048 1E-06 54.7 4.5 134 172-318 176-323 (326)
36 PRK03743 pdxA 4-hydroxythreoni 94.2 0.056 1.2E-06 54.3 4.4 135 172-319 177-325 (332)
37 PRK02746 pdxA 4-hydroxythreoni 94.1 0.058 1.3E-06 54.4 4.3 139 172-319 179-338 (345)
38 PRK01909 pdxA 4-hydroxythreoni 94.0 0.063 1.4E-06 53.9 4.4 135 172-319 172-321 (329)
39 PF04166 PdxA: Pyridoxal phosp 93.2 0.057 1.2E-06 53.5 2.6 133 172-316 150-296 (298)
40 PRK00232 pdxA 4-hydroxythreoni 91.5 0.14 3.1E-06 51.5 3.0 134 172-319 177-325 (332)
41 COG1995 PdxA Pyridoxal phospha 91.4 0.12 2.7E-06 51.5 2.4 62 249-317 259-322 (332)
42 PRK05312 pdxA 4-hydroxythreoni 90.8 0.18 3.8E-06 50.9 2.8 135 172-319 181-330 (336)
43 TIGR00557 pdxA 4-hydroxythreon 90.8 0.18 3.9E-06 50.5 2.9 134 172-318 169-317 (320)
44 PRK03946 pdxA 4-hydroxythreoni 90.6 0.19 4.2E-06 50.0 2.8 134 172-319 157-302 (307)
45 PRK12862 malic enzyme; Reviewe 67.7 35 0.00076 38.3 10.1 100 172-271 607-720 (763)
46 TIGR00651 pta phosphate acetyl 63.0 47 0.001 33.1 9.1 98 175-272 157-269 (303)
47 PRK07232 bifunctional malic en 54.9 86 0.0019 35.2 10.2 99 175-273 602-714 (752)
48 PF03602 Cons_hypoth95: Conser 50.7 53 0.0012 30.0 6.7 68 186-258 57-124 (183)
49 PF12847 Methyltransf_18: Meth 50.0 39 0.00084 27.0 5.1 62 184-256 14-78 (112)
50 PRK09653 eutD phosphotransacet 49.9 1E+02 0.0023 30.7 9.1 98 175-273 173-285 (324)
51 PRK12475 thiamine/molybdopteri 49.6 1.4E+02 0.0029 30.1 10.0 75 186-266 40-137 (338)
52 PTZ00435 isocitrate dehydrogen 46.3 21 0.00046 37.1 3.6 24 142-165 127-150 (413)
53 cd06308 PBP1_sensor_kinase_lik 45.7 1.5E+02 0.0033 27.2 9.1 77 177-256 106-190 (270)
54 cd06323 PBP1_ribose_binding Pe 42.1 2E+02 0.0043 26.1 9.2 79 176-257 104-190 (268)
55 cd06322 PBP1_ABC_sugar_binding 41.8 2.3E+02 0.005 25.8 9.7 63 194-258 120-189 (267)
56 PRK15490 Vi polysaccharide bio 41.1 1E+02 0.0023 33.5 8.0 105 167-274 164-306 (578)
57 TIGR00853 pts-lac PTS system, 38.7 72 0.0016 26.1 5.0 57 42-108 2-59 (95)
58 cd06320 PBP1_allose_binding Pe 38.5 2.3E+02 0.0049 26.1 9.1 73 182-256 107-190 (275)
59 PF07820 TraC: TraC-like prote 38.2 42 0.00092 27.8 3.5 37 176-225 23-59 (92)
60 cd00293 USP_Like Usp: Universa 37.6 2E+02 0.0043 22.5 8.8 80 176-256 9-101 (130)
61 KOG1671|consensus 36.8 20 0.00044 33.7 1.6 36 268-304 151-186 (210)
62 PRK11041 DNA-binding transcrip 36.7 1.6E+02 0.0034 27.7 7.9 73 182-256 139-221 (309)
63 PRK10499 PTS system N,N'-diace 36.5 1E+02 0.0023 25.7 5.8 55 43-107 3-58 (106)
64 PRK07742 phosphate butyryltran 36.2 3.4E+02 0.0074 26.7 10.3 107 175-283 148-270 (299)
65 PF03358 FMN_red: NADPH-depend 35.7 1.3E+02 0.0028 25.7 6.5 62 44-107 1-78 (152)
66 PRK12861 malic enzyme; Reviewe 35.5 2.7E+02 0.0058 31.5 10.3 98 175-272 611-722 (764)
67 cd06270 PBP1_GalS_like Ligand 34.6 2E+02 0.0044 26.3 8.1 72 183-256 104-185 (268)
68 PF01515 PTA_PTB: Phosphate ac 33.0 1.8E+02 0.0038 29.2 7.7 96 177-272 175-285 (319)
69 TIGR02356 adenyl_thiF thiazole 32.7 3.9E+02 0.0085 24.5 9.9 64 186-255 37-118 (202)
70 cd07186 CofD_like LPPG:FO 2-ph 32.6 93 0.002 31.1 5.6 96 90-187 174-302 (303)
71 PRK05282 (alpha)-aspartyl dipe 31.8 1.2E+02 0.0026 29.0 6.1 67 25-107 18-87 (233)
72 cd06309 PBP1_YtfQ_like Peripla 31.6 2.8E+02 0.0061 25.5 8.5 78 180-258 107-195 (273)
73 TIGR02709 branched_ptb branche 31.5 5.2E+02 0.011 25.5 10.8 95 175-271 125-235 (271)
74 KOG1014|consensus 31.1 77 0.0017 31.8 4.7 45 184-237 64-108 (312)
75 PRK03743 pdxA 4-hydroxythreoni 30.9 38 0.00082 34.3 2.6 20 44-63 4-25 (332)
76 cd06313 PBP1_ABC_sugar_binding 30.4 4.4E+02 0.0095 24.4 9.7 79 176-258 106-193 (272)
77 cd06305 PBP1_methylthioribose_ 30.3 3.2E+02 0.0069 24.9 8.6 77 176-256 103-191 (273)
78 cd06294 PBP1_ycjW_transcriptio 30.0 3.4E+02 0.0073 24.6 8.7 75 181-256 108-191 (270)
79 TIGR02469 CbiT precorrin-6Y C5 29.6 2E+02 0.0043 22.9 6.3 67 184-260 32-100 (124)
80 PRK02746 pdxA 4-hydroxythreoni 29.4 45 0.00097 34.0 2.8 20 44-63 10-31 (345)
81 cd01537 PBP1_Repressors_Sugar_ 29.0 3.5E+02 0.0077 24.0 8.5 76 181-257 104-187 (264)
82 TIGR02069 cyanophycinase cyano 29.0 2.5E+02 0.0054 27.0 7.8 62 42-107 27-90 (250)
83 TIGR00127 nadp_idh_euk isocitr 28.7 28 0.00061 36.2 1.3 23 142-164 124-146 (409)
84 PRK05805 phosphate butyryltran 28.4 5.7E+02 0.012 25.2 10.4 105 175-284 149-272 (301)
85 PRK01909 pdxA 4-hydroxythreoni 28.2 46 0.001 33.6 2.7 20 44-63 6-27 (329)
86 cd05564 PTS_IIB_chitobiose_lic 27.7 1.1E+02 0.0025 24.8 4.5 54 45-108 1-55 (96)
87 PF00532 Peripla_BP_1: Peripla 27.7 1.6E+02 0.0035 28.2 6.3 75 182-256 105-188 (279)
88 cd06300 PBP1_ABC_sugar_binding 27.4 4.8E+02 0.01 23.8 9.3 75 183-258 111-195 (272)
89 COG1995 PdxA Pyridoxal phospha 27.1 70 0.0015 32.4 3.6 18 43-60 3-22 (332)
90 TIGR01819 F420_cofD LPPG:FO 2- 26.5 1.2E+02 0.0026 30.4 5.1 93 90-187 173-296 (297)
91 cd06273 PBP1_GntR_like_1 This 26.5 3.9E+02 0.0084 24.3 8.4 20 237-256 167-186 (268)
92 cd06311 PBP1_ABC_sugar_binding 26.2 4E+02 0.0086 24.5 8.5 70 184-257 114-194 (274)
93 KOG2666|consensus 25.5 7.1E+02 0.015 25.7 10.3 156 70-269 24-221 (481)
94 COG0280 Pta Phosphotransacetyl 25.4 4.9E+02 0.011 26.4 9.3 100 175-274 174-288 (327)
95 PF03469 XH: XH domain; Inter 25.2 2.1E+02 0.0045 25.3 5.8 44 325-368 73-128 (132)
96 KOG0189|consensus 25.0 1.7E+02 0.0037 28.1 5.6 59 187-249 62-122 (261)
97 cd06272 PBP1_hexuronate_repres 25.0 3.6E+02 0.0078 24.5 7.9 73 185-258 101-182 (261)
98 cd06287 PBP1_LacI_like_8 Ligan 24.6 4.7E+02 0.01 24.4 8.8 74 181-256 104-186 (269)
99 cd02975 PfPDO_like_N Pyrococcu 24.6 2.7E+02 0.0059 22.9 6.3 58 178-237 6-63 (113)
100 PRK06078 pyrimidine-nucleoside 24.3 4.7E+02 0.01 27.6 9.3 95 90-203 136-238 (434)
101 PRK03371 pdxA 4-hydroxythreoni 24.3 54 0.0012 33.1 2.3 20 44-63 3-24 (326)
102 cd06278 PBP1_LacI_like_2 Ligan 23.9 4.5E+02 0.0097 23.7 8.3 76 181-257 101-183 (266)
103 PRK00107 gidB 16S rRNA methylt 23.5 3.3E+02 0.0072 24.9 7.2 59 186-256 60-120 (187)
104 COG5309 Exo-beta-1,3-glucanase 23.4 1.2E+02 0.0025 30.2 4.3 98 10-111 69-177 (305)
105 PRK03946 pdxA 4-hydroxythreoni 23.0 55 0.0012 32.8 2.1 18 45-62 3-22 (307)
106 cd06280 PBP1_LacI_like_4 Ligan 22.9 2.5E+02 0.0055 25.6 6.5 76 180-258 100-182 (263)
107 cd06288 PBP1_sucrose_transcrip 22.4 4.9E+02 0.011 23.5 8.3 75 181-257 102-186 (269)
108 cd01545 PBP1_SalR Ligand-bindi 22.4 5.6E+02 0.012 23.1 8.7 75 181-256 104-187 (270)
109 PRK00232 pdxA 4-hydroxythreoni 22.3 66 0.0014 32.6 2.5 20 44-63 5-26 (332)
110 PRK09590 celB cellobiose phosp 21.9 2.1E+02 0.0044 24.0 5.0 56 44-107 2-58 (104)
111 PRK13606 LPPG:FO 2-phospho-L-l 21.9 2.8E+02 0.006 27.9 6.7 96 90-191 176-302 (303)
112 cd06303 PBP1_LuxPQ_Quorum_Sens 21.8 6.5E+02 0.014 23.3 9.4 62 193-256 129-198 (280)
113 cd01574 PBP1_LacI Ligand-bindi 20.4 5.7E+02 0.012 23.1 8.3 51 56-110 15-67 (264)
114 PRK10310 PTS system galactitol 20.3 2.4E+02 0.0051 22.9 5.0 54 44-107 3-58 (94)
115 PRK05312 pdxA 4-hydroxythreoni 20.3 75 0.0016 32.2 2.5 19 45-63 5-25 (336)
116 TIGR02706 P_butyryltrans phosp 20.2 8.3E+02 0.018 23.9 10.2 98 175-272 145-258 (294)
117 cd06293 PBP1_LacI_like_11 Liga 20.1 5.1E+02 0.011 23.6 7.9 19 238-256 167-185 (269)
118 PRK07688 thiamine/molybdopteri 20.1 8.1E+02 0.018 24.6 9.8 77 185-267 39-138 (339)
No 1
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-114 Score=842.96 Aligned_cols=324 Identities=40% Similarity=0.622 Sum_probs=307.3
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHcC---CCeeEEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCCCC-
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYAG---VPVDFETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSLD- 114 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~---~~ie~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~~~- 114 (376)
+.++|++|||||||||||+++++||++++ ++|+|+++++|..++++++ |+++++.|+++|++||||+++|.+.
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~ 81 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP 81 (348)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence 57999999999999999999999999986 8999999999998887654 9999999999999999999999442
Q ss_pred -----chhhHHHhhhhcccEee-----cccccccCC-CCccEEEEccCCcceeeccccc-ccCc-eEEEeEeecHHHHHH
Q psy559 115 -----SLWTLKLCRLILRVIAM-----MILSVRCRQ-QGIDIVIVRQNTEGEYAMLEHE-SVDG-VVESMKIITAANSYR 181 (376)
Q Consensus 115 -----~~~~~~LR~~~ldLyan-----~~pg~~~~~-~~iDivivREnteG~Y~g~e~~-~~~~-va~~~~~~Tr~~~eR 181 (376)
++.+++|| |+|||||| .+|+++++. +++|||||||||||+|+|.++. ..++ +++++++|||.++||
T Consensus 82 ~~~~~~~~ll~lR-k~l~lyANlRP~k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~eva~~~~~~Tr~~~eR 160 (348)
T COG0473 82 LPRPERGLLLALR-KELDLYANLRPAKSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGGEVAIDTKVITRKGSER 160 (348)
T ss_pred CCCcccchHHHHH-HhcCceeeeeecccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCCeEEEEEEeccHHHHHH
Confidence 34599999 99999999 789999877 6999999999999999999884 3344 899999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhh
Q psy559 182 LSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAI 261 (376)
Q Consensus 182 iar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDI 261 (376)
|+|+|||+|++|++||||+|||+|||++||+||+++|+||+++||||+++|+|||+++||||++|++||||||+||||||
T Consensus 161 I~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDI 240 (348)
T COG0473 161 IARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDI 240 (348)
T ss_pred HHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhhcCCCcchhHHhHHHHHHHHhhCccccCEEEEccchhHH
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhcCCcccccccccCCC--ceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Q psy559 262 TSNVICGLIGGAGLISGKNYGDH--YAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTIN 339 (376)
Q Consensus 262 LSDlaa~l~GglGl~psanig~~--~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~ 339 (376)
|||+||+++|||||+||+|+|++ ++|||| +|||||||||||||||+|+|||++|||+|+|..++|++|++||+++|+
T Consensus 241 LSD~aa~l~GslGl~PSAnig~~~~~~lfEP-vHGSAPDIAGkgiANPiA~IlS~aMML~~~g~~~~A~~Ie~Av~~vl~ 319 (348)
T COG0473 241 LSDEAAALTGSLGLAPSANLGDERGPALFEP-VHGSAPDIAGKGIANPIATILSAAMMLRHLGEKEAADAIENAVEKVLA 319 (348)
T ss_pred HHhHHHHhcCccccCccCccCCCCCCceeec-CCCCcccccCCCccChHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999997 999999 999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q psy559 340 EDKIHTPDLGGTATSIDVVQNIIKLVQT 367 (376)
Q Consensus 340 ~~~~~T~DlgG~~sT~e~~daV~~~l~~ 367 (376)
+++++|+||||+++|.||+|+|+++|+.
T Consensus 320 ~~g~~T~Dlgg~~~T~e~~d~I~~~l~~ 347 (348)
T COG0473 320 EGGIRTPDLGGNATTSEVGDAIAKALAS 347 (348)
T ss_pred cCCCCCcccCCCccHHHHHHHHHHHHhc
Confidence 7669999999999999999999999864
No 2
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=4.5e-110 Score=820.58 Aligned_cols=320 Identities=38% Similarity=0.607 Sum_probs=305.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCC--Cchhh
Q psy559 44 NAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSL--DSLWT 118 (376)
Q Consensus 44 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~--~~~~~ 118 (376)
++|++|||||||||||+++++||++++.+++|+++++|..+++++ .|++++++|+++|++||||+++|.+ .++.+
T Consensus 3 ~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~~~~~~~~ 82 (334)
T PRK08997 3 QTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVGEGFTSIN 82 (334)
T ss_pred cEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCCcCccchH
Confidence 689999999999999999999999999999999999999887654 3899999999999999999999953 25669
Q ss_pred HHHhhhhcccEee-----cccccccCCCCccEEEEccCCcceeecccccccC--ceEEEeEeecHHHHHHHHHHHHHHHH
Q psy559 119 LKLCRLILRVIAM-----MILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVD--GVVESMKIITAANSYRLSKYAFEYAK 191 (376)
Q Consensus 119 ~~LR~~~ldLyan-----~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~--~va~~~~~~Tr~~~eRiar~AFe~A~ 191 (376)
+.|| |+||||+| ++||++++++++|+|||||||||+|+|.+++..+ .+++++++|||++++||+|+||++|+
T Consensus 83 ~~LR-~~ldlyanvRP~k~~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~a~~~~~~Tr~~~eRi~r~Af~~A~ 161 (334)
T PRK08997 83 VTLR-KKFDLYANVRPVLSFPGTKARYDNIDIITVRENTEGMYSGEGQTVSEDGETAEATSIITRKGAERIVRFAYELAR 161 (334)
T ss_pred HHHH-HHcCCeEEEeecccCCCCCCccCCcCEEEEEeccCceecCccceecCCCceEEEEEEeeHHHHHHHHHHHHHHHH
Confidence 9999 99999999 7999999999999999999999999999865433 38999999999999999999999999
Q ss_pred hCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcC
Q psy559 192 KFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIG 271 (376)
Q Consensus 192 ~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~G 271 (376)
+|++||||++||+|||+.||+||+++|+||+++||+|+++++|||++|||||++|++||||||+|||||||||++|+++|
T Consensus 162 ~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~yP~V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~G 241 (334)
T PRK08997 162 KEGRKKVTAVHKANIMKSTSGLFLKVAREVALRYPDIEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVG 241 (334)
T ss_pred hcCCCeEEEEeCCCcchhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcC
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q psy559 272 GAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGT 351 (376)
Q Consensus 272 glGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~DlgG~ 351 (376)
|+||+||+|+|++++|||| +|||||||||||+|||+|+|||++|||+|||++++|++|++||++++++|+.+|+||||+
T Consensus 242 glGl~psanig~~~a~FEp-~HGSAPdIAGk~iANP~a~IlS~amML~~lG~~~~A~~i~~AV~~vl~~G~~~T~DlGG~ 320 (334)
T PRK08997 242 GLGMAPGANIGRDAAIFEA-VHGSAPDIAGKNLANPTSVILAAIQMLEYLGMPDKAERIRKAIVAVIEAGDRTTRDLGGT 320 (334)
T ss_pred CCCcCcceeECCCceEEEC-CCCchhhhCCCCccCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHcCCccCcccCCC
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999877789999999
Q ss_pred CCHHHHHHHHHHHH
Q psy559 352 ATSIDVVQNIIKLV 365 (376)
Q Consensus 352 ~sT~e~~daV~~~l 365 (376)
+||+||+|+|+++|
T Consensus 321 a~T~e~~~av~~~l 334 (334)
T PRK08997 321 HGTTDFTQAVIDRL 334 (334)
T ss_pred cCHHHHHHHHHhhC
Confidence 99999999999875
No 3
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=2.3e-109 Score=819.78 Aligned_cols=347 Identities=44% Similarity=0.671 Sum_probs=319.8
Q ss_pred hhhhhhhHhhhcccccccccchhcccccchhhhhhccCCCCeeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEcc
Q psy559 2 VSRMCSNFLAASKVYDKQSVRTMAFVMPKLKEVYTKAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQID 81 (376)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g 81 (376)
+.|+.||-|...+ . |-+-..+| .+++++.++|++|||||||||||+++++||++++++++|+++++|
T Consensus 2 ~~~~~~~~~~~~~-----~-~~~~~~~~-------~~~~~~~~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G 68 (360)
T PLN00123 2 LKRLLSNALGSKA-----Q-RRSVTYMP-------RPGDGAPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVH 68 (360)
T ss_pred hhhhhhhhhhhhh-----c-cCCcccCC-------cccCCCceEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 4577888775322 1 11123333 355667799999999999999999999999999999999999998
Q ss_pred ccCCCCCChHHHHHHHHhcCeEEEcccccCCC--CchhhHHHhhhhcccEee-----cccccccCCCCccEEEEccCCcc
Q psy559 82 PKSDSNDDLEYAITSIRRNGVAIKGNIETGSL--DSLWTLKLCRLILRVIAM-----MILSVRCRQQGIDIVIVRQNTEG 154 (376)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~dail~G~i~~p~~--~~~~~~~LR~~~ldLyan-----~~pg~~~~~~~iDivivREnteG 154 (376)
... ...|++++++|+++|++||||+++|.+ .++.++.|| ++|||||| ++||++++++++|+|||||||||
T Consensus 69 ~~~--~~lp~~~l~~~~~~da~L~Gavg~p~~~~~~s~~l~LR-~~ldLyaNvRP~k~~pg~~~~~~~iD~viVREnteG 145 (360)
T PLN00123 69 GDM--KKVPEEVLESIRRNKVCLKGGLATPVGGGVSSLNVQLR-KELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEG 145 (360)
T ss_pred CCC--ccCCHHHHHHHHHCCEEEEccccCCCCcCccchHHHHH-HHcCCEEEEEEeecCCCCCCccCCCCEEEEEeCCCc
Confidence 863 345999999999999999999999953 246699999 99999999 89999999999999999999999
Q ss_pred eeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeee
Q psy559 155 EYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMI 234 (376)
Q Consensus 155 ~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~ 234 (376)
+|+|.|++..+++++++++|||+++|||+|+||+||++|+|||||++||+|||+.|||||+++|+||+++||+|++++++
T Consensus 146 ~Y~g~~~~~~~g~~~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva~eyPdV~~~~~~ 225 (360)
T PLN00123 146 EYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPGIKYNEII 225 (360)
T ss_pred eeccceeecCCCceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHHhhCCCceEeeee
Confidence 99999987778899999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccCCC--Ccc--ccccCCCccchhHH
Q psy559 235 IDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTR--NTG--TAIAGKNIANPIAM 310 (376)
Q Consensus 235 vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~H--GsA--pdiaGk~iANP~a~ 310 (376)
||++|||||++|++||||||+|||||||||++|+++||+||+||+|||++++|||| +| ||| |||||||+|||+|+
T Consensus 226 VDa~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSanig~~~a~FEp-vh~hGSA~~PdIAGk~iANP~a~ 304 (360)
T PLN00123 226 VDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQ-GASAGNVGNEKLVEQKKANPVAL 304 (360)
T ss_pred HHHHHHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCccceEeeCCCceEEEe-cccCCCcCCccccCCCccChHHH
Confidence 99999999999999999999999999999999999999999999999999999999 76 999 99999999999999
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy559 311 LNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLV 365 (376)
Q Consensus 311 IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~DlgG~~sT~e~~daV~~~l 365 (376)
|||++|||+|||++++|++|++||.+++++|+++|+||||++||+||+|+|+++|
T Consensus 305 IlS~amML~~lG~~~~A~~I~~AV~~~l~~G~~~T~DlGG~~sT~e~~~ai~~~l 359 (360)
T PLN00123 305 LLSSAMMLRHLQFPSFADRLETAVKRVIAEGKYRTKDLGGSSTTQEVVDAVIANL 359 (360)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHcCCccCcccCCCcCHHHHHHHHHHhh
Confidence 9999999999999999999999999999987799999999999999999999987
No 4
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=9.6e-110 Score=826.21 Aligned_cols=322 Identities=46% Similarity=0.701 Sum_probs=308.7
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCC--Cch
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSL--DSL 116 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~--~~~ 116 (376)
..++|++|||||||||||+++++||++++++++|+++++|...++++ .|++++++|+++|++||||+++|.. .++
T Consensus 40 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~~~~~s 119 (372)
T PLN00118 40 TPITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIGKGHRS 119 (372)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCccccccC
Confidence 45899999999999999999999999999999999999999887654 3899999999999999999999942 356
Q ss_pred hhHHHhhhhcccEee-----cccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHH
Q psy559 117 WTLKLCRLILRVIAM-----MILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAK 191 (376)
Q Consensus 117 ~~~~LR~~~ldLyan-----~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~ 191 (376)
.++.|| |+|||||| ++||++++++++|+|||||||||+|+|.+++..+++++++++|||+++|||+|+||+||+
T Consensus 120 ~~~~LR-k~ldLyaNvRPvr~~pg~~~~~~~iD~vIVREnteG~Y~g~~~~~~~gv~~~~~v~Tr~~~eRIar~AF~~A~ 198 (372)
T PLN00118 120 LNLTLR-KELGLYANVRPCYSLPGYKTRYDDVDLVTIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAK 198 (372)
T ss_pred chHHHH-HHcCCeeeecccccCCCccCcccCceEEEEEecCCCcccceeeeccCCeEEEEEecCHHHHHHHHHHHHHHHH
Confidence 699999 99999999 789999999999999999999999999998877889999999999999999999999999
Q ss_pred hCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcC
Q psy559 192 KFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIG 271 (376)
Q Consensus 192 ~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~G 271 (376)
+|++||||++||+|||+.||+||+++|+||+++||+|++++++||++|||||++|++||||||+|||||||||++++++|
T Consensus 199 ~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~G 278 (372)
T PLN00118 199 THGRKRVSAIHKANIMKKTDGLFLKCCREVAEKYPEIVYEEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIG 278 (372)
T ss_pred HcCCCeEEEEECCccchhhhHHHHHHHHHHHhhCCCceEEeeeHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcC
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCC-ceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q psy559 272 GAGLISGKNYGDH-YAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGG 350 (376)
Q Consensus 272 glGl~psanig~~-~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~DlgG 350 (376)
|+||+||+|+|++ .+|||| +|||||||||||+|||+|+|||++|||+|||++++|++|++||.+++++|+++|+||||
T Consensus 279 glGlapSanig~~~~a~FEp-vHGSAPdIAGk~iANP~A~IlS~amML~~lG~~~~A~~I~~Av~~~l~~G~~~T~DlGG 357 (372)
T PLN00118 279 GLGLTPSCNIGENGLALAEA-VHGSAPDIAGKNLANPTALLLSAVMMLRHLKLNEQAEQIHNAILNTIAEGKYRTADLGG 357 (372)
T ss_pred CcccCcceeecCCCCeEEEC-CCCChhhhCCCCCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcCCccCcccCC
Confidence 9999999999987 799999 99999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy559 351 TATSIDVVQNIIKLV 365 (376)
Q Consensus 351 ~~sT~e~~daV~~~l 365 (376)
++||+||+|+|+++|
T Consensus 358 ~~sT~e~~dav~~~l 372 (372)
T PLN00118 358 SSTTTDFTKAICDHL 372 (372)
T ss_pred CcCHHHHHHHHHhhC
Confidence 999999999999875
No 5
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-109 Score=813.14 Aligned_cols=317 Identities=36% Similarity=0.577 Sum_probs=305.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCCCchhhHH
Q psy559 44 NAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSLDSLWTLK 120 (376)
Q Consensus 44 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~~~~~~~~ 120 (376)
++|++|||||||||||+++++||++++++++|+++++|.+++.++ .|++++++|+++|++||||+++|. .+.++.
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~--~~~~~~ 79 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA--ADVIVK 79 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc--cchHHH
Confidence 689999999999999999999999999999999999999887554 389999999999999999999983 466999
Q ss_pred HhhhhcccEee-----cccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhC--
Q psy559 121 LCRLILRVIAM-----MILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKF-- 193 (376)
Q Consensus 121 LR~~~ldLyan-----~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r-- 193 (376)
|| |+|||||| ++||++++++++|+|||||||||+|+|.+++..+++++++++|||++++||+|+||+||++|
T Consensus 80 LR-~~ldlyanvRP~r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~~ 158 (330)
T PRK14025 80 LR-RILDTYANVRPVKSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEIADGVTVATRVITRKASERIFRFAFEMAKRRKK 158 (330)
T ss_pred HH-HHcCCeEEEEEeecCCCCCCccCCcCEEEEEECCCceecCcccccCCCceEEeEeccHHHHHHHHHHHHHHHHhccc
Confidence 99 99999999 89999999999999999999999999999887788999999999999999999999999999
Q ss_pred --CCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcC
Q psy559 194 --GRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIG 271 (376)
Q Consensus 194 --~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~G 271 (376)
++|+||++||+|||+.||+||+++|+||+++||+|++++++||++|||||++|++||||||+|||||||||++|+++|
T Consensus 159 ~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva~~yp~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~G 238 (330)
T PRK14025 159 MGKEGKVTCAHKANVLKKTDGLFKKTFYEVAKEYPDIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLVG 238 (330)
T ss_pred cCCCCeEEEEECCCchhhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q psy559 272 GAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGT 351 (376)
Q Consensus 272 glGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~DlgG~ 351 (376)
|+||+||+|+|++++|||| +|||||||||||+|||+|+|||++|||+|||++++|++|++||++++++| ++|+||||+
T Consensus 239 glGl~psanig~~~a~FEp-~HGSAPdiAGk~iANP~a~IlS~ammL~~lG~~~~A~~I~~Av~~vl~~g-~~T~DlGG~ 316 (330)
T PRK14025 239 GLGLAPSANIGDKYGLFEP-VHGSAPDIAGKGIANPTATILTAVLMLRHLGENEEADKVEKALEEVLALG-LTTPDLGGN 316 (330)
T ss_pred CCCcccceeeCCCcceeEc-CCCCchhhCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CCCcccCCC
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999885 899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy559 352 ATSIDVVQNIIKLV 365 (376)
Q Consensus 352 ~sT~e~~daV~~~l 365 (376)
+||+||+|+|+++|
T Consensus 317 ~~T~e~~~av~~~~ 330 (330)
T PRK14025 317 LSTMEMAEEVAKRV 330 (330)
T ss_pred cCHHHHHHHHHHhC
Confidence 99999999999875
No 6
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-107 Score=806.75 Aligned_cols=322 Identities=28% Similarity=0.466 Sum_probs=300.6
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc-----CCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCC
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA-----GVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSL 113 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~-----~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~ 113 (376)
+.++|+||||||||||||+++++||+++ +++++|+++++|.++++++ .|+++++.|+++|++||||+++|.+
T Consensus 2 ~~~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~ 81 (352)
T PRK08194 2 KQFKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKL 81 (352)
T ss_pred CceEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCc
Confidence 3589999999999999999999999976 5799999999999887654 3899999999999999999999952
Q ss_pred ---Cchh---hHHHhhhhcccEee-----cccccccCC---CCccEEEEccCCcceeeccccccc---CceEEEeEeecH
Q psy559 114 ---DSLW---TLKLCRLILRVIAM-----MILSVRCRQ---QGIDIVIVRQNTEGEYAMLEHESV---DGVVESMKIITA 176 (376)
Q Consensus 114 ---~~~~---~~~LR~~~ldLyan-----~~pg~~~~~---~~iDivivREnteG~Y~g~e~~~~---~~va~~~~~~Tr 176 (376)
.++. ++.|| |+|||||| ++||++++. +++|+|||||||||+|+|.++... .++++++++|||
T Consensus 82 ~~~~~~~~~~~l~LR-~~ldLyaNvRP~k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~~g~~~~a~~~~~~Tr 160 (352)
T PRK08194 82 VPDHISLWGLLIKIR-REFEQVINIRPAKQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIHRGEDEIAIQNAVFTR 160 (352)
T ss_pred CCCCCCchhhHHHHH-HHcCCEEEEEeeecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCccccCCccceEEEEEEeeH
Confidence 1333 99999 99999999 789999886 799999999999999999875532 347899999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCC
Q psy559 177 ANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 177 ~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~N 256 (376)
+++|||+|+||++|++| +||||+|||+|||+.||+||+++|+||+++||+|+++++|||++|||||++|++||||||+|
T Consensus 161 ~~~eRI~r~Af~~A~~r-~~~Vt~v~KaNvl~~t~~lf~~~~~eva~~yp~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~N 239 (352)
T PRK08194 161 KGTERAMRYAFELAAKR-RKHVTSATKSNGIVHSMPFWDEVFQEVGKDYPEIETDSQHIDALAAFFVTRPEEFDVIVASN 239 (352)
T ss_pred HHHHHHHHHHHHHHHHc-CCcEEEEeCcchhhhhHHHHHHHHHHHHhhCCCceeeehhHHHHHHHHhhChhhCcEEEEcc
Confidence 99999999999999998 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhhhhhcCCcccccccccCCC--c-eeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHH
Q psy559 257 LYGAITSNVICGLIGGAGLISGKNYGDH--Y-AVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLA 333 (376)
Q Consensus 257 lfGDILSDlaa~l~GglGl~psanig~~--~-a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~A 333 (376)
||||||||++++++||+||+||+|||++ . +|||| +|||||||||||+|||+|+|||++|||+|||++++|++|++|
T Consensus 240 lfGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp-~HGSAPdiAGk~iANP~a~IlS~amML~~lg~~~~A~~i~~A 318 (352)
T PRK08194 240 LFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEP-VHGSAPDIAGKGIANPIGQIWTAKLMLDHFGEEELGSHLLDV 318 (352)
T ss_pred chHHHHhHHHHHhcCCccccceeeecCCCCcceEEEC-CCCCchhhCCCCcCCcHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 9999999999999999999999999954 4 99999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q psy559 334 IEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQT 367 (376)
Q Consensus 334 V~~~l~~~~~~T~DlgG~~sT~e~~daV~~~l~~ 367 (376)
|++++++| ++|+||||++||+||+++|+++|++
T Consensus 319 v~~~l~~g-~~T~DlGG~~~T~e~~~ai~~~l~~ 351 (352)
T PRK08194 319 IEDVTEDG-IKTPDIGGRATTDEVTDEIISRLKK 351 (352)
T ss_pred HHHHHHcC-CCcCcCCCCcCHHHHHHHHHHHHhh
Confidence 99999885 9999999999999999999999954
No 7
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=7.4e-107 Score=799.65 Aligned_cols=324 Identities=55% Similarity=0.875 Sum_probs=307.1
Q ss_pred CCeeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCC-CChHHHHHHHHhcCeEEEcccccCCC---Cch
Q psy559 41 GGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSN-DDLEYAITSIRRNGVAIKGNIETGSL---DSL 116 (376)
Q Consensus 41 ~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~-~~~~~~~~~~~~~dail~G~i~~p~~---~~~ 116 (376)
|++++|+||||||||||||+++++||++++++++|+++++|.+.... ..|++++++|+++|++||||+++|.. .++
T Consensus 1 ~g~~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~~~~~s 80 (333)
T TIGR00175 1 GGKYTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQTDGKTEIPDEAVESIKRNKVALKGPLETPIGKGGHRS 80 (333)
T ss_pred CCcEEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChhhccCCcCCHHHHHHHHHCCEEEEcccCCccccccccc
Confidence 45789999999999999999999999999999999999999875444 34999999999999999999999842 345
Q ss_pred hhHHHhhhhcccEee-----cccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHH
Q psy559 117 WTLKLCRLILRVIAM-----MILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAK 191 (376)
Q Consensus 117 ~~~~LR~~~ldLyan-----~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~ 191 (376)
.++.|| ++||||+| ++||++++++++|++||||||||+|+|.+++..+++++++++|||++++||+|+||+||+
T Consensus 81 ~~~~lR-~~ldlyanvRP~k~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~eRi~r~Af~~A~ 159 (333)
T TIGR00175 81 LNVALR-KELDLYANVVHCKSLPGFKTRHEDVDIVIIRENTEGEYSGLEHESVPGVVESLKVITRDKSERIARYAFEYAR 159 (333)
T ss_pred hhHHHH-HHcCCEEEeEEecCCCCCCCCCCCcCEEEEEEeCCCcccceeEeccCCeEEEEEecCHHHHHHHHHHHHHHHH
Confidence 699999 99999999 889999999999999999999999999998777889999999999999999999999999
Q ss_pred hCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcC
Q psy559 192 KFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIG 271 (376)
Q Consensus 192 ~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~G 271 (376)
+|++||||++||+|||+.||++|+++|+|++++||+|+++++|||+++|+||++|++||||||+|||||||||++++++|
T Consensus 160 ~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~yp~v~~~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~G 239 (333)
T TIGR00175 160 KNGRKKVTAVHKANIMKLADGLFLNVCREVAKEYPDITFESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVG 239 (333)
T ss_pred hcCCCeEEEEECCccchhhHHHHHHHHHHHHHHCCCCeeeeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhcC
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q psy559 272 GAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGT 351 (376)
Q Consensus 272 glGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~DlgG~ 351 (376)
|+||+||+|+|++++||||..|||||||||||+|||+|+|||++|||+|||++++|++|++||.+++++|+++|+||||+
T Consensus 240 slGl~pSanig~~~a~fEp~~hGSApdiaGk~iaNP~a~Ils~ammL~~lG~~~~a~~i~~Av~~~l~~G~~~T~DlGG~ 319 (333)
T TIGR00175 240 GPGLVPGANIGRDYAVFEPGVRHTGPDIAGQNIANPTALILSSVMMLNHLGLKEHADRIQKAVLSTIAEGKNRTKDLGGT 319 (333)
T ss_pred CcccCceeEEcCCCceEeccCCCCchhhCCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCccChhcCCC
Confidence 99999999999999999994459999999999999999999999999999999999999999999999877999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy559 352 ATSIDVVQNIIKLV 365 (376)
Q Consensus 352 ~sT~e~~daV~~~l 365 (376)
+||+||+|+|+++|
T Consensus 320 ~~T~e~~~ai~~~l 333 (333)
T TIGR00175 320 ATTSDFTEAVIKRL 333 (333)
T ss_pred cCHHHHHHHHHhhC
Confidence 99999999999875
No 8
>KOG0785|consensus
Probab=100.00 E-value=1.1e-107 Score=778.23 Aligned_cols=322 Identities=44% Similarity=0.730 Sum_probs=310.8
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCC--C-CChHHHHHHHHhcCeEEEcccccCCC--Cch
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDS--N-DDLEYAITSIRRNGVAIKGNIETGSL--DSL 116 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~--~-~~~~~~~~~~~~~dail~G~i~~p~~--~~~ 116 (376)
++++|++||||||||||++++++|++++.+||+|++++.+..... . ..|++++++++++++.||||+.+|.+ .++
T Consensus 34 ~~~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~kgh~S 113 (365)
T KOG0785|consen 34 KTITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIGKGHRS 113 (365)
T ss_pred CceEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCcccccccc
Confidence 678999999999999999999999999999999999998765432 2 24999999999999999999999976 378
Q ss_pred hhHHHhhhhcccEee-----cccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHH
Q psy559 117 WTLKLCRLILRVIAM-----MILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAK 191 (376)
Q Consensus 117 ~~~~LR~~~ldLyan-----~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~ 191 (376)
.|++|| |+|+|||| +++|.+++++++|+|+|||||||+|+|+||+..+||++++++||+.+++||++|||+||+
T Consensus 114 ~nl~LR-K~f~LyANVRPc~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~vvpGVvqsiK~IT~~AS~Ria~~AF~yAr 192 (365)
T KOG0785|consen 114 LNLALR-KEFGLYANVRPCKSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQVVPGVVQSIKLITEAASRRIAEYAFEYAR 192 (365)
T ss_pred HHHHHH-HHhchhccceecccccCCcCCCCCceEEEEecCCccccccceeeccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999 99999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcC
Q psy559 192 KFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIG 271 (376)
Q Consensus 192 ~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~G 271 (376)
+++|++||++||+|||+.|||||+++|+|++++||||.+|++|+|++|++|+++|..|||+|+||||||||||+||+|+|
T Consensus 193 ~~~R~~vtvvHKaNImr~tDGLFle~cre~a~~y~dI~~eE~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvG 272 (365)
T KOG0785|consen 193 QNGRKRVTVVHKANIMRMTDGLFLECCREVAKKYPDIKFEEQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSDLCAGLVG 272 (365)
T ss_pred HcCCCceEEEehhhhhhhcchHHHHHHHHHhhhCCccchhHHHHHHHHHHHhcCchhceEEeccchhHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q psy559 272 GAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGT 351 (376)
Q Consensus 272 glGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~DlgG~ 351 (376)
|||++||+|||++.++||| +||||||||||++|||+|++||++|||+|+|+.++|+.|++||.+++++|+++|+||||+
T Consensus 273 gLGltPS~NiG~g~~~~e~-vHGsAPDIAGkdlANPtAlllS~vmMLrhm~l~~~A~~I~~Av~~ti~eg~~rT~DLGGk 351 (365)
T KOG0785|consen 273 GLGLTPSANIGDGIVIFEA-VHGSAPDIAGKDLANPTALLLSAVMMLRHMGLNDQADQIESAVFKTIAEGKIRTPDLGGK 351 (365)
T ss_pred CcccCCCcccCCCeeeeec-ccCCCcccccCCcCCcHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhccCccCcccCCC
Confidence 9999999999998999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy559 352 ATSIDVVQNIIKLV 365 (376)
Q Consensus 352 ~sT~e~~daV~~~l 365 (376)
++|+||+++|+++|
T Consensus 352 a~~seft~aVc~~l 365 (365)
T KOG0785|consen 352 ATTSEFTDAVCDRL 365 (365)
T ss_pred ccchHHHHHHHhcC
Confidence 99999999999875
No 9
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=8.5e-107 Score=803.37 Aligned_cols=320 Identities=30% Similarity=0.449 Sum_probs=298.8
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc-----CCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCC
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA-----GVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSL 113 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~-----~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~ 113 (376)
+.++|++|||||||||||+++++||+++ +++|+|+++++|..+++++ .|++++++|+++|++||||+++|.+
T Consensus 2 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~ 81 (352)
T TIGR02089 2 KQYRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPAL 81 (352)
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCC
Confidence 4689999999999999999999999977 4899999999999887554 3899999999999999999999942
Q ss_pred C------chhhHHHhhhhcccEee-----cccccccCC-----CCccEEEEccCCcceeeccccccc----CceEEEeEe
Q psy559 114 D------SLWTLKLCRLILRVIAM-----MILSVRCRQ-----QGIDIVIVRQNTEGEYAMLEHESV----DGVVESMKI 173 (376)
Q Consensus 114 ~------~~~~~~LR~~~ldLyan-----~~pg~~~~~-----~~iDivivREnteG~Y~g~e~~~~----~~va~~~~~ 173 (376)
. ++.++.|| |+|||||| ++||+++++ +++|+|||||||||+|+|.+++.. ++.++++++
T Consensus 82 ~~~~~~~~~~~l~LR-k~ldLyaNvRP~~~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~~~~~~~~a~~~~~ 160 (352)
T TIGR02089 82 VPDHISLWGLLLKIR-REFDQYANVRPAKLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIHRGTDEEVATQNAI 160 (352)
T ss_pred CCCccCchhhHHHHH-HHcCCeEEEEEeecCCCCCCccccccCCCCCEEEEEecCCcccccccccccCCccceeEEEeEE
Confidence 1 23499999 99999999 789998876 689999999999999999875432 246889999
Q ss_pred ecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEe
Q psy559 174 ITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMV 253 (376)
Q Consensus 174 ~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV 253 (376)
|||+++|||+|+||+||++| |||||++||+|||+.||+||+++|+||+++||+|+++++|||++|||||++|++|||||
T Consensus 161 ~tr~~~eRi~r~Af~~A~~r-r~kVt~v~KaNvl~~t~~lf~~~~~eva~~yp~v~~~~~~vD~~~~~lv~~P~~fDViv 239 (352)
T TIGR02089 161 FTRKGVERIMRFAFELAQKR-RKHLTSATKSNGIRHSMPFWDEVFAEVAAEYPDVEWDSYHIDALAARFVLKPETFDVIV 239 (352)
T ss_pred ecHHHHHHHHHHHHHHHHHc-CCCEEEEeCCcchhhhhHHHHHHHHHHHhhCCCceEeeehHHHHHHHHhcChhhCcEEE
Confidence 99999999999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHhhhhhhhcCCcccccccccCCC---ceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHH
Q psy559 254 MPNLYGAITSNVICGLIGGAGLISGKNYGDH---YAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASII 330 (376)
Q Consensus 254 ~~NlfGDILSDlaa~l~GglGl~psanig~~---~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I 330 (376)
|+|||||||||++++++||+||+||+|||++ .+|||| +|||||||||||+|||+|+|||++|||+|||++++|++|
T Consensus 240 t~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp-~HGSAPdiAGk~iANP~a~Ils~amML~~lg~~~~A~~I 318 (352)
T TIGR02089 240 ASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEP-VHGSAPDIAGKGIANPIGAIWTAAMMLEHLGEKEAGAKI 318 (352)
T ss_pred ecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeec-CCCCchhhcCCCccCcHHHHHHHHHHHHHcCChhHHHHH
Confidence 9999999999999999999999999999864 389999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy559 331 KLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLV 365 (376)
Q Consensus 331 ~~AV~~~l~~~~~~T~DlgG~~sT~e~~daV~~~l 365 (376)
++||++++++| ++|+||||++||+||+|+|+++|
T Consensus 319 ~~Av~~~l~~g-~~T~DlGG~~sT~e~~~ai~~~l 352 (352)
T TIGR02089 319 MDAIERVTAAG-ILTPDVGGKATTSEVTEAVCNAL 352 (352)
T ss_pred HHHHHHHHHcC-CccCCCCCCcCHHHHHHHHHhhC
Confidence 99999999885 99999999999999999999875
No 10
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=2.5e-106 Score=821.34 Aligned_cols=323 Identities=38% Similarity=0.599 Sum_probs=308.4
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCC----ChHHHHHHHHhcCeEEEcccccCCC--Cc
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSND----DLEYAITSIRRNGVAIKGNIETGSL--DS 115 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~----~~~~~~~~~~~~dail~G~i~~p~~--~~ 115 (376)
.+++|+||||||||||||+++++||++++.+++|+++++|...+.++ .|++++++|+++|++||||+++|.. .+
T Consensus 3 ~~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~~~~~ 82 (482)
T PRK09222 3 EKTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQGGGYK 82 (482)
T ss_pred CcceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCccCcc
Confidence 45899999999999999999999999999999999999999887553 3899999999999999999999953 35
Q ss_pred hhhHHHhhhhcccEee-----cc-cccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHH
Q psy559 116 LWTLKLCRLILRVIAM-----MI-LSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEY 189 (376)
Q Consensus 116 ~~~~~LR~~~ldLyan-----~~-pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~ 189 (376)
+.++.|| ++|||||| ++ ||++++++++|+|||||||||+|+|.|++..+++++++++|||+++|||+|+||+|
T Consensus 83 s~~~~LR-k~ldLYaNvRP~r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~~~~~~~~~k~iTr~~~eRI~r~AFe~ 161 (482)
T PRK09222 83 SLNVTLR-KTLGLYANVRPCVSYHPFVETKHPNLDVVIIRENEEDLYAGIEHRQTPDVYQCLKLISRPGSEKIIRYAFEY 161 (482)
T ss_pred chHHHHH-HHcCCeEEeeeEEecCCCCCCCCCCcCEEEEEeccCCeeccceeecCCCeeeEeeccCHHHHHHHHHHHHHH
Confidence 6699999 99999999 77 99999999999999999999999999988778899999999999999999999999
Q ss_pred HHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhh
Q psy559 190 AKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGL 269 (376)
Q Consensus 190 A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l 269 (376)
|++|+|||||++||+|||+.|||||+++|+||+++||+|++++++||++||+||++|++||||||+|||||||||++|++
T Consensus 162 A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l 241 (482)
T PRK09222 162 ARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIAKEYPDIEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEI 241 (482)
T ss_pred HHhcCCCeEEEEECCCcccccchHHHHHHHHHHhhCCCceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHh
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCC
Q psy559 270 IGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLG 349 (376)
Q Consensus 270 ~GglGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~Dlg 349 (376)
+||+||+||+|||++++|||| +|||||||||||+|||+|+|||++|||+|||++++|++|++||.+++++| ++|+|||
T Consensus 242 ~GslGlapSanig~~~amFEp-vHGSAPdIAGk~iANP~a~IlSaamML~hlG~~~~A~~I~~Av~~tl~~G-~~T~Dl~ 319 (482)
T PRK09222 242 SGSVGLAGSANIGEEYAMFEA-VHGSAPDIAGKNIANPSGLLNAAVMMLVHIGQFDIAELIENAWLKTLEDG-IHTADIY 319 (482)
T ss_pred cCCcccccceecCCCceeeEC-CCCCchhhcCCCccCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcC-CCCcccC
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999886 9999995
Q ss_pred C------CCCHHHHHHHHHHHHhh
Q psy559 350 G------TATSIDVVQNIIKLVQT 367 (376)
Q Consensus 350 G------~~sT~e~~daV~~~l~~ 367 (376)
| ++||+||+|+|+++|.+
T Consensus 320 g~~~~~~~~~T~e~~~aVi~~l~~ 343 (482)
T PRK09222 320 NEGVSKKKVGTKEFAEAVIENLGQ 343 (482)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHhc
Confidence 5 58999999999999954
No 11
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=4e-106 Score=817.36 Aligned_cols=320 Identities=37% Similarity=0.567 Sum_probs=306.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCC----ChHHHHHHHHhcCeEEEcccccCCC--Cchhh
Q psy559 45 AVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSND----DLEYAITSIRRNGVAIKGNIETGSL--DSLWT 118 (376)
Q Consensus 45 ~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~----~~~~~~~~~~~~dail~G~i~~p~~--~~~~~ 118 (376)
+|+||||||||||||+++++||++++.+++|+++++|...+.++ .|++++++|+++|++||||+++|.+ .++.+
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~~~~~s~~ 81 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQGGGHKSLN 81 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCccCcccHH
Confidence 69999999999999999999999999999999999999887542 3899999999999999999999953 35679
Q ss_pred HHHhhhhcccEee-----cc-cccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHh
Q psy559 119 LKLCRLILRVIAM-----MI-LSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKK 192 (376)
Q Consensus 119 ~~LR~~~ldLyan-----~~-pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~ 192 (376)
+.|| |+|||||| ++ |+++++++++|+|||||||||+|+|.|++..+++++++++|||+++|||+|+||+||++
T Consensus 82 ~~LR-k~ldLYANvRPv~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~~~~~~~~kviTr~g~eRI~r~AFe~A~~ 160 (473)
T TIGR02924 82 VTLR-KTLGLYANIRPCVSYHPFIETKSPNLNIVIVRENEEDLYTGIEYRQTPDTYECTKLITRSGSEKICRYAFEYARK 160 (473)
T ss_pred HHHH-HHcCCeEEEEEeeccCCCCCCccCCcCEEEEEeccCceecCceeeccCChheEeEecCHHHHHHHHHHHHHHHHh
Confidence 9999 99999999 67 89999999999999999999999999988777889999999999999999999999999
Q ss_pred CCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCC
Q psy559 193 FGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGG 272 (376)
Q Consensus 193 r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~Gg 272 (376)
|+|||||++||+|||+.|||||+++|+||+++||+|++++++||++||+||++|++||||||+|||||||||++|+++||
T Consensus 161 r~rkkVT~v~KaNVmk~tdglf~e~~~eva~eyPdI~~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~Gs 240 (473)
T TIGR02924 161 HNRKKVTCLTKDNIMKMTDGIFHKIFDKIAAEYPDIESEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGS 240 (473)
T ss_pred cCCCeEEEEECCccccccchhHHHHHHHHHhhCCCcEEeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCC
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCC---
Q psy559 273 AGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLG--- 349 (376)
Q Consensus 273 lGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~Dlg--- 349 (376)
+||+||+|+|++++|||| +|||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+|||
T Consensus 241 lGlapSaNiG~~~amFEp-vHGSAPdIAGk~iANP~a~IlSaamML~hLG~~~~A~~I~~AV~~vl~~G-~~T~Dl~~~~ 318 (473)
T TIGR02924 241 VGLAGSANIGEEYAMFEA-VHGSAPDIAGQNIANPSGLLNAAIQMLVHIGQSDIAQLIYNAWLKTLEDG-VHTADIYNEK 318 (473)
T ss_pred cCcccceecCCCcceeec-CCCchhhhCCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcCccccccc
Confidence 999999999999999999 99999999999999999999999999999999999999999999999885 9999994
Q ss_pred ---CCCCHHHHHHHHHHHHhh
Q psy559 350 ---GTATSIDVVQNIIKLVQT 367 (376)
Q Consensus 350 ---G~~sT~e~~daV~~~l~~ 367 (376)
|++||+||+|+|+++|.+
T Consensus 319 ~~gg~~sT~e~~daVi~~l~~ 339 (473)
T TIGR02924 319 TSKQKVGTKEFAEAVTANLGK 339 (473)
T ss_pred cCCCCcCHHHHHHHHHHHhcc
Confidence 679999999999999954
No 12
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=2e-105 Score=790.88 Aligned_cols=316 Identities=28% Similarity=0.419 Sum_probs=296.0
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc---CCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCCC-
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA---GVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSLD- 114 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~---~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~~- 114 (376)
|+++|+||||||||||||+++++||+++ +++++|+++++|.++++++ .|++++++|+++|++||||+++|...
T Consensus 3 k~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~~ 82 (344)
T PRK03437 3 KTMKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVPS 82 (344)
T ss_pred ceEEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCCC
Confidence 5789999999999999999999999987 8999999999999887654 38999999999999999999999421
Q ss_pred ----chhhHHHhhhhcccEee-----cccccccCC---CCccEEEEccCCcceeecccccc----cCceEEEeEeecHHH
Q psy559 115 ----SLWTLKLCRLILRVIAM-----MILSVRCRQ---QGIDIVIVRQNTEGEYAMLEHES----VDGVVESMKIITAAN 178 (376)
Q Consensus 115 ----~~~~~~LR~~~ldLyan-----~~pg~~~~~---~~iDivivREnteG~Y~g~e~~~----~~~va~~~~~~Tr~~ 178 (376)
++.++.|| |+||||+| ++||+++|+ +++|++||||||||+|+|.++.. .+++++++++|||++
T Consensus 83 ~~~~~~~~~~LR-k~ldLyaNvRP~r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~~Tr~~ 161 (344)
T PRK03437 83 GVLERGLLLKLR-FALDHYVNLRPSKLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGALRVGTPHEVATEVSVNTAFG 161 (344)
T ss_pred CCcccchHHHHH-HHcCCeEEEEEeecCCCCCCcCCCCCCCCEEEEEECCCccccCCcccccCCCcceeEEEEEEecHHH
Confidence 34589999 99999999 889999886 79999999999999999987543 235788999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcc
Q psy559 179 SYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLY 258 (376)
Q Consensus 179 ~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~Nlf 258 (376)
++||+|+||+||++|++|+||++||+|||+.|++||+++|+||+++||+|+++++|||++|||||++|++||||||+|||
T Consensus 162 ~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~Nlf 241 (344)
T PRK03437 162 VERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVAAEYPDVTVDYQHVDAATIFMVTDPSRFDVIVTDNLF 241 (344)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHHhhCCCceEeehhHHHHHHHHhcCcccCcEEEEcccc
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhhhhhcCCcccccccccCCC---ceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHH
Q psy559 259 GAITSNVICGLIGGAGLISGKNYGDH---YAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIE 335 (376)
Q Consensus 259 GDILSDlaa~l~GglGl~psanig~~---~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~ 335 (376)
||||||++++++||+|++||+|+|++ ++|||| +|||||||||||+|||+|+|||++|||+|||++++|++|++||+
T Consensus 242 GDILSDlaa~l~GglGl~pSanig~~g~~~a~FEp-~HGSAPdiAGk~iANP~a~IlS~amML~~lg~~~~a~~I~~Av~ 320 (344)
T PRK03437 242 GDIITDLAAAVTGGIGLAASGNINPTGTNPSMFEP-VHGSAPDIAGQGIADPTAAILSVALLLDHLGEEDAAARIEAAVE 320 (344)
T ss_pred hhhhhHHHHHhcCCccccceeeecCCCCcceeEec-CCCCchhhcCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999864 399999 99999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy559 336 KTINEDKIHTPDLGGTATSIDVVQNIIKLV 365 (376)
Q Consensus 336 ~~l~~~~~~T~DlgG~~sT~e~~daV~~~l 365 (376)
+++++| +||++||+||+|+|+++|
T Consensus 321 ~~l~~g------~gg~~~T~e~~~ai~~~l 344 (344)
T PRK03437 321 ADLAER------GKMGRSTAEVGDRIAARL 344 (344)
T ss_pred HHHHhc------CCCCcCHHHHHHHHHhhC
Confidence 999875 589999999999999875
No 13
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=2.8e-105 Score=800.93 Aligned_cols=320 Identities=30% Similarity=0.463 Sum_probs=296.4
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCCC
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSLD 114 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~~ 114 (376)
..++|+||||||||||||+++++||+++ +++++|+++++|..++.++ .|+++++.|+++|++||||+++|.++
T Consensus 45 ~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~ 124 (409)
T PLN02329 45 KRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWD 124 (409)
T ss_pred ceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCC
Confidence 3589999999999999999999999976 5899999999999887554 38999999999999999999999431
Q ss_pred ---c-----hhhHHHhhhhcccEee-----ccccccc--C-----CCCccEEEEccCCcceeecccccc-----cCceEE
Q psy559 115 ---S-----LWTLKLCRLILRVIAM-----MILSVRC--R-----QQGIDIVIVRQNTEGEYAMLEHES-----VDGVVE 169 (376)
Q Consensus 115 ---~-----~~~~~LR~~~ldLyan-----~~pg~~~--~-----~~~iDivivREnteG~Y~g~e~~~-----~~~va~ 169 (376)
. +.++.|| |+|||||| ++||+++ + .+++|+|||||||||+|+|.++.. .+++++
T Consensus 125 ~~~~~~~~e~~ll~LR-k~ldLyaNvRPvr~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~~~~~~~~a~ 203 (409)
T PLN02329 125 KNEKHLRPEMALFYLR-RDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINENGEEVGV 203 (409)
T ss_pred CCcccccccccHHHHH-HHcCCeEeeeeeeccCCCCCcCcccccccCCceEEEEEECCCCeecCCCcceecccCCceeEE
Confidence 1 3499999 99999999 7899875 3 368999999999999999987432 235789
Q ss_pred EeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCc
Q psy559 170 SMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQF 249 (376)
Q Consensus 170 ~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~f 249 (376)
++++|||+++|||+|+||+||++|+ ||||+|||+|||+ +++||+++|+||+++||+|+++++|||++|||||++|++|
T Consensus 204 ~~~~iTr~~~eRI~r~AFe~A~~r~-~kVT~v~KaNVl~-t~~lf~~~~~evA~eyPdV~~~~~~VDa~a~~LV~~P~~F 281 (409)
T PLN02329 204 STEIYAAHEIDRIARVAFETARKRR-GKLCSVDKANVLD-ASILWRKRVTALASEYPDVELSHMYVDNAAMQLIRDPKQF 281 (409)
T ss_pred EeEEecHHHHHHHHHHHHHHHHHcC-CeEEEEECCCCcc-chHHHHHHHHHHHhhCCCcccchhHHHHHHHHHhcCchhC
Confidence 9999999999999999999999984 6999999999999 8999999999999999999999999999999999999999
Q ss_pred cEEecCCcchhhHhhhhhhhcCCcccccccccCCC-ceeeccCCCCccccccCCCccchhHHHHHHHHHHHH-cCcHHHH
Q psy559 250 DVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH-YAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH-LGHMKHA 327 (376)
Q Consensus 250 dViV~~NlfGDILSDlaa~l~GglGl~psanig~~-~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~-lg~~~~A 327 (376)
|||||+|||||||||++|+++|||||+||+|||++ ++|||| +|||||||||||+|||+|+|||++|||+| ||++++|
T Consensus 282 DVIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~~a~FEp-vHGSAPdIAGk~iANP~A~ILS~amML~~~Lg~~~~A 360 (409)
T PLN02329 282 DTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEP-IHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAA 360 (409)
T ss_pred CEEEEcCcccccccHHHHHhcCCcccCceeecCCCCceeeec-cCCCchhhcCCcccChHHHHHHHHHHHhhhCCCHHHH
Confidence 99999999999999999999999999999999986 699999 99999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCC---CCC-CCHHHHHHHHHHHHh
Q psy559 328 SIIKLAIEKTINEDKIHTPDL---GGT-ATSIDVVQNIIKLVQ 366 (376)
Q Consensus 328 ~~I~~AV~~~l~~~~~~T~Dl---gG~-~sT~e~~daV~~~l~ 366 (376)
++|++||.+++++| ++|+|| ||+ +||+||+|+|+++|+
T Consensus 361 ~~I~~AV~~vl~~g-~~T~Dl~~~Gg~~~~T~e~~daIi~~l~ 402 (409)
T PLN02329 361 KRIEDAVVDALNKG-FRTGDIYSPGNKLVGCKEMGEEVLKSVD 402 (409)
T ss_pred HHHHHHHHHHHHcC-CcCcccccCCCCccCHHHHHHHHHHHHH
Confidence 99999999999864 899999 776 899999999999993
No 14
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=3e-104 Score=784.39 Aligned_cols=316 Identities=32% Similarity=0.481 Sum_probs=293.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCCC---
Q psy559 45 AVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSLD--- 114 (376)
Q Consensus 45 ~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~~--- 114 (376)
+|++|||||||||||+++++||+++ +++++|+++++|...+.++ .|++++++|+++|++||||+++|...
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 5899999999999999999999976 6899999999999887554 48999999999999999999999431
Q ss_pred -----chhhHHHhhhhcccEee-----ccccccc--CC-----CCccEEEEccCCcceeeccccccc----CceEEEeEe
Q psy559 115 -----SLWTLKLCRLILRVIAM-----MILSVRC--RQ-----QGIDIVIVRQNTEGEYAMLEHESV----DGVVESMKI 173 (376)
Q Consensus 115 -----~~~~~~LR~~~ldLyan-----~~pg~~~--~~-----~~iDivivREnteG~Y~g~e~~~~----~~va~~~~~ 173 (376)
...++.|| |+|||||| ++||+++ +. +++|+|||||||||+|+|.++... +++++++++
T Consensus 81 ~~~~~~~~~~~LR-~~ldlyanvRP~r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~~~~ 159 (349)
T TIGR00169 81 RDQRPEQGLLKLR-KSLDLFANLRPAKVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGAGGEGEAWDTEV 159 (349)
T ss_pred ccccchhhHHHHH-HHcCCeEEEEEeeccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCCCCcceEEEEEE
Confidence 12299999 99999999 7899875 33 789999999999999999976322 368999999
Q ss_pred ecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEe
Q psy559 174 ITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMV 253 (376)
Q Consensus 174 ~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV 253 (376)
|||+++|||+|+||+||++|+ ++||+|||+|+|+ ++++|+++|+||+++||+|++++++||++|||||++|++|||||
T Consensus 160 ~Tr~~~eRI~r~AF~~A~~r~-~~Vt~v~KaNvlk-t~glf~~~~~eva~~yP~I~~~~~~vDa~~~~Lv~~P~~fDViv 237 (349)
T TIGR00169 160 YTKPEIERIARVAFEMARKRR-KKVTSVDKANVLE-SSRLWRKTVEEIAKEYPDVELEHQYIDNAAMQLVKSPTQFDVVV 237 (349)
T ss_pred eeHHHHHHHHHHHHHHHHHcC-CcEEEEECCcccc-hhHHHHHHHHHHHhhCCCceEEeeeHHHHHHHHHhCccCceEEE
Confidence 999999999999999999985 4999999999999 89999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHhhhhhhhcCCcccccccccCC-CceeeccCCCCccccccCCCccchhHHHHHHHHHHHH-cCcHHHHHHHH
Q psy559 254 MPNLYGAITSNVICGLIGGAGLISGKNYGD-HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH-LGHMKHASIIK 331 (376)
Q Consensus 254 ~~NlfGDILSDlaa~l~GglGl~psanig~-~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~-lg~~~~A~~I~ 331 (376)
|+|||||||||++++++||+||+||+|+|+ +++|||| +|||||||||||+|||+|+|||++|||+| ||++++|++|+
T Consensus 238 ~~NlfGDILSDlaa~l~GglGlapSanig~~~~a~FEp-~HGSAPdiAGk~iANP~a~IlS~amML~~~lg~~~~a~~i~ 316 (349)
T TIGR00169 238 TGNIFGDILSDEASVIPGSLGMLPSASLGSDGFGLFEP-VHGSAPDIAGKGIANPIAQILSAAMMLRYSFNLEEAADAIE 316 (349)
T ss_pred EcCcccchhhHHHHHhcCCCCCCceEEECCCCCEEEEC-CCCChhHhcCCCCCChHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999999999999999999999995 5899999 99999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy559 332 LAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLV 365 (376)
Q Consensus 332 ~AV~~~l~~~~~~T~DlgG~~sT~e~~daV~~~l 365 (376)
+||++++++| ++|+||||++||+||+++|++.|
T Consensus 317 ~Av~~~l~~g-~~T~DlgG~~~t~e~t~av~~~~ 349 (349)
T TIGR00169 317 AAVKKVLAEG-YRTPDLGSSATTEVGTAEMGEEL 349 (349)
T ss_pred HHHHHHHHcC-CCccccCCCcchHHHHHHHHhcC
Confidence 9999999875 99999999999999999999764
No 15
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=9e-103 Score=775.57 Aligned_cols=319 Identities=33% Similarity=0.497 Sum_probs=297.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCCC-
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSLD- 114 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~~- 114 (376)
+++|++|||||||||||+++++||+++ +++++|+++++|..++.++ .|++++++|+++|++||||+++|.+.
T Consensus 2 ~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~ 81 (358)
T PRK00772 2 TYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDN 81 (358)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCC
Confidence 378999999999999999999999977 6899999999999887554 39999999999999999999999421
Q ss_pred --------chhhHHHhhhhcccEee-----ccccccc--CC-----CCccEEEEccCCcceeeccccccc----CceEEE
Q psy559 115 --------SLWTLKLCRLILRVIAM-----MILSVRC--RQ-----QGIDIVIVRQNTEGEYAMLEHESV----DGVVES 170 (376)
Q Consensus 115 --------~~~~~~LR~~~ldLyan-----~~pg~~~--~~-----~~iDivivREnteG~Y~g~e~~~~----~~va~~ 170 (376)
++ ++.|| ++||||+| ++||+++ |. +++|+|||||||||+|+|.+++.. .+++++
T Consensus 82 ~~~~~~~~~~-~~~LR-~~ldlyanvRP~r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~ 159 (358)
T PRK00772 82 LPPDVRPERG-LLALR-KELGLFANLRPAKLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGREGLGGEERAFD 159 (358)
T ss_pred CCccCCChhh-HHHHH-HHcCCeEEEeEeecCCCCCCcCCCcccccCCccEEEEecccCCeecCCcccccCCCCceeEEE
Confidence 23 99999 99999999 8899986 43 389999999999999999976542 347889
Q ss_pred eEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCcc
Q psy559 171 MKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFD 250 (376)
Q Consensus 171 ~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fd 250 (376)
+++|||++++||+|+||+||++| +|+||++||+|+|+ ++++|+++|+||+++||+|++++++||++|||||++|++||
T Consensus 160 ~~~iTr~~~~Ri~r~Af~~A~~r-~~~Vt~v~KaNvl~-~~glf~~~~~eva~eyp~i~~~~~~vDa~~~~lv~~P~~fD 237 (358)
T PRK00772 160 TMVYTREEIERIARVAFELARKR-RKKVTSVDKANVLE-SSRLWREVVTEVAKEYPDVELSHMYVDNAAMQLVRNPKQFD 237 (358)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHc-CCcEEEEECccccc-cchHHHHHHHHHHhHCCCceEEEEeHHHHHHHHhhCcccCe
Confidence 99999999999999999999998 56999999999999 78999999999999999999999999999999999999999
Q ss_pred EEecCCcchhhHhhhhhhhcCCcccccccccCCC-ceeeccCCCCccccccCCCccchhHHHHHHHHHHHH-cCcHHHHH
Q psy559 251 VMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH-YAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH-LGHMKHAS 328 (376)
Q Consensus 251 ViV~~NlfGDILSDlaa~l~GglGl~psanig~~-~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~-lg~~~~A~ 328 (376)
||||+|||||||||++++++||+||+||+|||++ +++||| +|||||||||||+|||+|+|||++|||+| ||++++|+
T Consensus 238 Viv~~NlfGDIlSDlaa~l~GglGl~psanig~~~~a~FEp-~HGSApdiAGk~~aNP~a~Ils~ammL~~~lg~~~~a~ 316 (358)
T PRK00772 238 VIVTENLFGDILSDEAAMLTGSLGMLPSASLGESGPGLYEP-IHGSAPDIAGKGIANPIATILSAAMMLRYSLGLEEAAD 316 (358)
T ss_pred EEeecCcccccccHHHHHhcCCCCCCcceEeCCCCceeeec-CCCchhhhcCCCCcCCHHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999976 799999 99999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCCCCCCCC---CCCCCHHHHHHHHHHHHhh
Q psy559 329 IIKLAIEKTINEDKIHTPDL---GGTATSIDVVQNIIKLVQT 367 (376)
Q Consensus 329 ~I~~AV~~~l~~~~~~T~Dl---gG~~sT~e~~daV~~~l~~ 367 (376)
+|++||.+++++| ++|+|| ||++||+||+|+|+++|++
T Consensus 317 ~i~~Av~~~l~~g-~~T~Dl~~~gg~~~T~e~~~av~~~l~~ 357 (358)
T PRK00772 317 AIEAAVEKVLAQG-YRTADIAEGGGKVSTSEMGDAILAALAE 357 (358)
T ss_pred HHHHHHHHHHHcC-CcCcccccCCCCcCHHHHHHHHHHHhhc
Confidence 9999999999886 899999 8999999999999999854
No 16
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.1e-102 Score=785.05 Aligned_cols=320 Identities=29% Similarity=0.447 Sum_probs=297.1
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc---C----CCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccC
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA---G----VPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETG 111 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~---~----~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p 111 (376)
+.+ |++|||||||||||+++++||+++ + ++|+|+++++|.++++++ .|++++++|+++|++||||+++|
T Consensus 23 ~~~-I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP 101 (412)
T PRK06451 23 KPI-ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETP 101 (412)
T ss_pred CcE-EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCC
Confidence 335 999999999999999999999965 2 489999999999987654 39999999999999999999999
Q ss_pred CC--CchhhHHHhhhhcccEee-----cccccccCC---CCccEEEEccCCcceeecccccc------------------
Q psy559 112 SL--DSLWTLKLCRLILRVIAM-----MILSVRCRQ---QGIDIVIVRQNTEGEYAMLEHES------------------ 163 (376)
Q Consensus 112 ~~--~~~~~~~LR~~~ldLyan-----~~pg~~~~~---~~iDivivREnteG~Y~g~e~~~------------------ 163 (376)
.. .++.++.|| ++|||||| ++||+++++ +++|||||||||||+|+|.+++.
T Consensus 102 ~~~~~~s~~l~LR-k~ldLyaNvRPvk~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~~~~~~~ 180 (412)
T PRK06451 102 IGKGWKSINVAIR-LMLDLYANIRPVKYIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFLRKELGV 180 (412)
T ss_pred CCcCCcChhHHHH-HHcCCeEeeceeecCCCCCCcccCcCCccEEEEEeccCCeeecccccccccccccccccccccccc
Confidence 42 356699999 99999999 789999886 79999999999999999997421
Q ss_pred --cCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-hCCC-------------
Q psy559 164 --VDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-EYPE------------- 227 (376)
Q Consensus 164 --~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-eyP~------------- 227 (376)
..+.++++++||+.+++||+|+||+||++|++||||+|||+|||++||++|+++|+|+++ +||+
T Consensus 181 ~~~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~eypd~~~~~~~~~~~y~ 260 (412)
T PRK06451 181 EVEDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFRDYVVTEEEVTKNYN 260 (412)
T ss_pred ccccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhCCcccccccchhhccc
Confidence 123577999999999999999999999999889999999999999999999999999996 8995
Q ss_pred -------eeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccCCCCcccccc
Q psy559 228 -------IEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIA 300 (376)
Q Consensus 228 -------I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsApdia 300 (376)
|+++++|||++|||||++|++||||||+|||||||||++|+++||+||+||+|+|++.+|||| +||||||||
T Consensus 261 ~~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~~alFEp-vHGSAPdiA 339 (412)
T PRK06451 261 GVPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIGDTGGMFEA-IHGTAPKYA 339 (412)
T ss_pred cccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCCceeEC-CCCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCC----CCC-CCHHHHHHHHHHHH
Q psy559 301 GKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDL----GGT-ATSIDVVQNIIKLV 365 (376)
Q Consensus 301 Gk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~Dl----gG~-~sT~e~~daV~~~l 365 (376)
|||+|||+|+|||++|||+|||++++|++|++||.+++++| ++|+|| ||+ +||+||+|+|+++|
T Consensus 340 Gk~iANP~a~IlS~amML~~lg~~~~A~~I~~Av~~vl~~G-~~T~Dl~~~~gg~~~~T~e~~daI~~~l 408 (412)
T PRK06451 340 GKNVANPTGIIKGGELMLRFMGWDKAADLIDKAIMESIKQK-KVTQDLARFMGVRALSTTEYTDELISII 408 (412)
T ss_pred CCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcCccccccCCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886 899999 555 79999999999998
No 17
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=3.7e-102 Score=762.25 Aligned_cols=311 Identities=36% Similarity=0.554 Sum_probs=295.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCC--CchhhHH
Q psy559 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSL--DSLWTLK 120 (376)
Q Consensus 46 I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~--~~~~~~~ 120 (376)
|++|||||||||||+++++||++.+++++|+++++|..+++++ .|++++++|+++|++||||+++|.+ .++.++.
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~~~~~s~~~~ 80 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPANPGYKSVIVT 80 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCCCCccChHHH
Confidence 6899999999999999999999999999999999999887654 3899999999999999999999964 3566999
Q ss_pred HhhhhcccEee-----cccccccCCC-CccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCC
Q psy559 121 LCRLILRVIAM-----MILSVRCRQQ-GIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFG 194 (376)
Q Consensus 121 LR~~~ldLyan-----~~pg~~~~~~-~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~ 194 (376)
|| |+||||+| ++||++++++ ++|+|||||||||+|+|.++. .+++++++++|||+++|||+|+||+||++|+
T Consensus 81 LR-~~ldlyanvRP~r~~~g~~~~~~~~iD~vivREnteG~Y~g~~~~-~~~~a~~~~~~tr~~~eRi~r~AF~~A~~r~ 158 (322)
T TIGR02088 81 LR-KELDLYANVRPAKSLPGIPDLYPNGKDIVIVRENTEGLYAGFEFG-FSDRAIAIRVITREGSERIARFAFNLAKERN 158 (322)
T ss_pred HH-HHcCCEEEEEEeeccCCCCCCCCCCCCEEEEEeCcCCeeeccccc-cCcceEEEEEecHHHHHHHHHHHHHHHHHcC
Confidence 99 99999999 8899999886 999999999999999999864 3567899999999999999999999999985
Q ss_pred CCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcc
Q psy559 195 RKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAG 274 (376)
Q Consensus 195 rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglG 274 (376)
| |||++||+|||+.|+|||+++|+||+++|| |++++++||++|||||++|++||||||+|||||||||++|+++||+|
T Consensus 159 ~-~Vt~v~KaNvl~~t~glf~~~~~eva~~yp-v~~~~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglG 236 (322)
T TIGR02088 159 R-KVTCVHKANVLKGTDGLFREVCREIAKRYG-VEYRDMYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLG 236 (322)
T ss_pred C-cEEEEeCCcchhhhHHHHHHHHHHHHHhCC-eeeeeeeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCC
Confidence 4 599999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCH
Q psy559 275 LISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATS 354 (376)
Q Consensus 275 l~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~DlgG~~sT 354 (376)
|+||+|+|++++|||| .|||||||+|||+|||+|+|+|++|||+|||++++|++|++||++++++| ++|+||||++||
T Consensus 237 l~pSanig~~~a~fep-~hGsa~diaG~~~aNp~a~i~A~~~~l~~~g~~~~a~~i~~Av~~~l~~g-~~T~DlgG~~~T 314 (322)
T TIGR02088 237 LAPSANIGDRKALFEP-VHGSAPDIAGKGIANPTAAILSVAMMLDYLGELEKGKLVWEAVEYYIIEG-KKTPDLGGTAKT 314 (322)
T ss_pred CCceeEEcCCceEEec-CCCChhHhCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CCCcccCCCcCH
Confidence 9999999999999999 99999999999999999999999999999999999999999999999885 899999999999
Q ss_pred HHHHHHHH
Q psy559 355 IDVVQNII 362 (376)
Q Consensus 355 ~e~~daV~ 362 (376)
+||+|+|+
T Consensus 315 ~e~~~av~ 322 (322)
T TIGR02088 315 KEVGDEIA 322 (322)
T ss_pred HHHHHHhC
Confidence 99999985
No 18
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-101 Score=778.59 Aligned_cols=320 Identities=30% Similarity=0.406 Sum_probs=295.0
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc---C----CCeeEEEEEccccCCC---C--CChHHHHHHHHhcCeEEEcccc
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA---G----VPVDFETVQIDPKSDS---N--DDLEYAITSIRRNGVAIKGNIE 109 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~---~----~~ie~~~~~~g~~~~~---~--~~~~~~~~~~~~~dail~G~i~ 109 (376)
+++ |++|||||||||||+++++||+++ + .+|+|+++++|..+++ . ..|++++++|+++|++||||++
T Consensus 19 ~~~-I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~ 97 (409)
T PRK07006 19 NPI-IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLT 97 (409)
T ss_pred CcE-EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECccc
Confidence 335 999999999999999999999975 2 4899999999998764 3 3489999999999999999999
Q ss_pred cCCC--CchhhHHHhhhhcccEee-----cccccccCC---CCccEEEEccCCcceeecccccc----------------
Q psy559 110 TGSL--DSLWTLKLCRLILRVIAM-----MILSVRCRQ---QGIDIVIVRQNTEGEYAMLEHES---------------- 163 (376)
Q Consensus 110 ~p~~--~~~~~~~LR~~~ldLyan-----~~pg~~~~~---~~iDivivREnteG~Y~g~e~~~---------------- 163 (376)
+|.. .++.++.|| ++|||||| ++||+++++ +++|||||||||||+|+|.++..
T Consensus 98 tp~~~~~~s~~l~LR-~~ldLyaNvRPvk~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~ 176 (409)
T PRK07006 98 TPVGGGIRSLNVALR-QELDLYVCLRPVRYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIKFLQEEM 176 (409)
T ss_pred CCCCcCccChHHHHH-HHcCCEEEEEEEecCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeeecccccc
Confidence 9953 356699999 99999999 789999886 68999999999999999987421
Q ss_pred -------cCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-hC----------
Q psy559 164 -------VDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-EY---------- 225 (376)
Q Consensus 164 -------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-ey---------- 225 (376)
..+.++++++|||+++|||+|+||+||++|++||||++||+|||+.|||||++|+.||++ +|
T Consensus 177 ~~~~~~~~~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey~~~~~~~~~~ 256 (409)
T PRK07006 177 GVKKIRFPETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEFGDELIDGGPW 256 (409)
T ss_pred CcccccccccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHhhhhhhccccc
Confidence 123567999999999999999999999999888999999999999999999998889987 68
Q ss_pred ---------CCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccCCCCcc
Q psy559 226 ---------PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTG 296 (376)
Q Consensus 226 ---------P~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsA 296 (376)
|+|++++++||++|||||++|++||||||+|||||||||++|+++||+||+||+|+|++++|||| +||||
T Consensus 257 ~~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSanig~~~a~FEp-vHGSA 335 (409)
T PRK07006 257 DKIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDGHAIFEA-THGTA 335 (409)
T ss_pred cccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccceeCCCceEEEC-CCCcc
Confidence 89999999999999999999999999999999999999999999999999999999998999999 99999
Q ss_pred ccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCC-----CCC-CCHHHHHHHHHHHH
Q psy559 297 TAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDL-----GGT-ATSIDVVQNIIKLV 365 (376)
Q Consensus 297 pdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~Dl-----gG~-~sT~e~~daV~~~l 365 (376)
|||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+|| ||+ +||+||+|+|+++|
T Consensus 336 PdiAGk~iANP~a~IlS~amML~~lG~~~~A~~Ie~Av~~~l~~G-~~T~Dl~~~~~gg~~~~T~e~~daI~~~l 409 (409)
T PRK07006 336 PKYAGLDKVNPGSVILSAEMMLRHMGWTEAADLIIKSMEKTIASK-TVTYDFARLMEGATEVKCSEFGDALIKNM 409 (409)
T ss_pred hhhCCCCCcChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC-CccccccccCCCCcccCHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999875 899999 445 79999999999875
No 19
>KOG0784|consensus
Probab=100.00 E-value=1.5e-101 Score=744.36 Aligned_cols=344 Identities=57% Similarity=0.902 Sum_probs=322.7
Q ss_pred cccccchhcccccchhhhhhccCCCCeeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCC-CCChHHHHH
Q psy559 17 DKQSVRTMAFVMPKLKEVYTKAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDS-NDDLEYAIT 95 (376)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~-~~~~~~~~~ 95 (376)
.+..++..+.+..| +++|+++++|++|||||||||++.+..+|+++.++|++|+++++++..-. ...++++++
T Consensus 22 ~~~~~~~~~~~~~p------~~kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~~~~~~~~~~~e~v~ 95 (375)
T KOG0784|consen 22 AKSRARAAPVTVLP------PAKYGGRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSGSNKESSEDLDEAVE 95 (375)
T ss_pred hhhcccccccccCC------CcccCCcceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccCCccccchhHHHHHH
Confidence 33444555555566 78999999999999999999999999999999999999999999973212 234889999
Q ss_pred HHHhcCeEEEcccccCCCC---chhhHHHhhhhcccEee-----cccccccCCCCccEEEEccCCcceeecccccccCce
Q psy559 96 SIRRNGVAIKGNIETGSLD---SLWTLKLCRLILRVIAM-----MILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGV 167 (376)
Q Consensus 96 ~~~~~dail~G~i~~p~~~---~~~~~~LR~~~ldLyan-----~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~v 167 (376)
++++++++|||.+.+|... .+.+++|| ++|||||| ++||++++++++|++||||||||+|+|+||+++||+
T Consensus 96 Si~rNkValkG~i~t~~~~g~~~s~n~~LR-~~LDLyanvv~~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~VpGV 174 (375)
T KOG0784|consen 96 SIKRNKVALKGNIETPDLPGGAKSLNVKLR-KELDLYANVVHCKSLPGVKTRHENVDIVIIRENTEGEYSGLEHESVPGV 174 (375)
T ss_pred HHHhcceeEeecccCCCCccchhhhHHHHH-HhhhhhhheeeeeccCCcccccCCccEEEEecCCcccccccccccCcch
Confidence 9999999999999999322 45699999 99999999 899999999999999999999999999999999999
Q ss_pred EEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCC
Q psy559 168 VESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPK 247 (376)
Q Consensus 168 a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~ 247 (376)
+++++++|++.++||+|||||||.++||||||+|||||+||.+||||+++|+||++.||+|+++.|+||++|||||++|+
T Consensus 175 VEsLKVvT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva~~Yp~I~~e~miVDN~~MQlvs~P~ 254 (375)
T KOG0784|consen 175 VESLKVVTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVAKKYPDITFEEMIVDNACMQLVSRPQ 254 (375)
T ss_pred hheeeeehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHHhcCCCccHHHhhHHHhHHHhhcCch
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CccEEecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHH
Q psy559 248 QFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHA 327 (376)
Q Consensus 248 ~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A 327 (376)
+|||+|||||||+|+|.+|++++||.|+.|++|+|+++++|||+...+..+++||++|||+|+|||++|||+|||++..|
T Consensus 255 qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n~G~~yAVFE~g~r~~~~~~~g~~~aNPtA~llss~~MLrHL~l~~~A 334 (375)
T KOG0784|consen 255 QFDVMVMPNLYGNIISNIAAGLVGGAGLVSGANYGDDYAVFEPGARHTGTSIAGKNIANPTAMLLSSVDMLRHLGLPSHA 334 (375)
T ss_pred heeeEechHHHHHHHHHHHHHhcCCCCcccccccccceEEecccccccchhhhcccccCcHHHHHHHHHHHHHcCChHHH
Confidence 99999999999999999999999999999999999999999998656667899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q psy559 328 SIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQT 367 (376)
Q Consensus 328 ~~I~~AV~~~l~~~~~~T~DlgG~~sT~e~~daV~~~l~~ 367 (376)
++|++||.+++.+|+++|+||||+.||++|+++|+++|+.
T Consensus 335 d~i~~Av~~vi~egk~rT~DlGG~~Tt~dvi~avI~~l~~ 374 (375)
T KOG0784|consen 335 DRISTAVKRVIDEGKIRTKDLGGQSTTQDVIDAVIANLRC 374 (375)
T ss_pred HHHHHHHHHHHhcCcccccccCCCcchHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999874
No 20
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=5.6e-101 Score=776.12 Aligned_cols=317 Identities=31% Similarity=0.420 Sum_probs=293.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHcC-------CCeeEEEEEccccCCCCC-----ChHHHHHHHHhcCeEEEcccccCCC
Q psy559 46 VTMLPGGGIGPELMSYVKEVFRYAG-------VPVDFETVQIDPKSDSND-----DLEYAITSIRRNGVAIKGNIETGSL 113 (376)
Q Consensus 46 I~vipGDGIGpEV~~aa~~Vl~a~~-------~~ie~~~~~~g~~~~~~~-----~~~~~~~~~~~~dail~G~i~~p~~ 113 (376)
|+||||||||||||+++++||+++. .+|+|+++++|..+++++ .|++++++|+++|++||||+++|..
T Consensus 29 I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~ 108 (416)
T TIGR00183 29 IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG 108 (416)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 9999999999999999999999763 489999999999876433 3899999999999999999999943
Q ss_pred --CchhhHHHhhhhcccEee-----cccccccCC---CCccEEEEccCCcceeeccccc-----------------c---
Q psy559 114 --DSLWTLKLCRLILRVIAM-----MILSVRCRQ---QGIDIVIVRQNTEGEYAMLEHE-----------------S--- 163 (376)
Q Consensus 114 --~~~~~~~LR~~~ldLyan-----~~pg~~~~~---~~iDivivREnteG~Y~g~e~~-----------------~--- 163 (376)
.++.++.|| ++|||||| ++||+++++ +++|||||||||||+|+|.++. .
T Consensus 109 ~~~~s~~l~LR-~~ldLyaNvRP~k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~g~~~ 187 (416)
T TIGR00183 109 GGIRSLNVALR-QELDLYVCLRPVRYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIRFLQNELGVKK 187 (416)
T ss_pred ccccCcHHHHH-HHcCCEEEEeEeecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeecccccccCccc
Confidence 356699999 99999999 789999886 6999999999999999998732 1
Q ss_pred ---cCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-hC--------------
Q psy559 164 ---VDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-EY-------------- 225 (376)
Q Consensus 164 ---~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-ey-------------- 225 (376)
..+.++++++||+++++||+|+||+||++|++++||++||+|||+.|||+|++++.||++ +|
T Consensus 188 ~~~~~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ey~~~~~~~~lw~~~~ 267 (416)
T TIGR00183 188 IRFPEDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKEFGAECITWGLWDKYK 267 (416)
T ss_pred cccccccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHHHhHhhhhcccccccc
Confidence 124678999999999999999999999999888999999999999999999999999998 67
Q ss_pred -----CCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccCCCCcccccc
Q psy559 226 -----PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIA 300 (376)
Q Consensus 226 -----P~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsApdia 300 (376)
|+|+++|++||++|||||++|++||||||+|||||||||++|+++||+||+||+|||++++|||| +||||||||
T Consensus 268 ~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSanig~~~alFEp-~HGSAPdiA 346 (416)
T TIGR00183 268 NPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIGDEIGIFEA-THGTAPKYA 346 (416)
T ss_pred CcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCceEEEC-CCCCchhhc
Confidence 49999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCC----CC-C-CCHHHHHHHHHHHH
Q psy559 301 GKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDL----GG-T-ATSIDVVQNIIKLV 365 (376)
Q Consensus 301 Gk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~Dl----gG-~-~sT~e~~daV~~~l 365 (376)
|||+|||+|+|||++|||+|||++++|++|++||.+++++| ++|+|| || + +||+||+|+|+++|
T Consensus 347 Gk~iANP~a~IlS~amML~~lg~~~~A~~Ie~AV~~~l~~G-~~T~Dl~~~~gg~~~~~T~e~~daI~~~l 416 (416)
T TIGR00183 347 GQDKVNPGSIILSGEMMLEHMGWKEAADLIKKAMEKAIASK-IVTYDFARLMDGAKEVKCSEFAEAIIENM 416 (416)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcccccccccCCCcccCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999876 899999 55 4 79999999999875
No 21
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1e-100 Score=770.67 Aligned_cols=316 Identities=27% Similarity=0.395 Sum_probs=291.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHc---C----CCeeEEEEEccccCCCC-----CChHHHHHHHHhcCeEEEcccccCCC
Q psy559 46 VTMLPGGGIGPELMSYVKEVFRYA---G----VPVDFETVQIDPKSDSN-----DDLEYAITSIRRNGVAIKGNIETGSL 113 (376)
Q Consensus 46 I~vipGDGIGpEV~~aa~~Vl~a~---~----~~ie~~~~~~g~~~~~~-----~~~~~~~~~~~~~dail~G~i~~p~~ 113 (376)
|++|||||||||||+++++||+++ + .+|+|.++++|.+++++ ..|++++++|+++|++||||+++|.+
T Consensus 31 I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~ 110 (474)
T PRK07362 31 IPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIG 110 (474)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999999975 1 48999999999987643 24899999999999999999999954
Q ss_pred --CchhhHHHhhhhcccEee-----cccccccCC---CCccEEEEccCCcceeecccccc--------------------
Q psy559 114 --DSLWTLKLCRLILRVIAM-----MILSVRCRQ---QGIDIVIVRQNTEGEYAMLEHES-------------------- 163 (376)
Q Consensus 114 --~~~~~~~LR~~~ldLyan-----~~pg~~~~~---~~iDivivREnteG~Y~g~e~~~-------------------- 163 (376)
.++.++.|| |+||||+| ++||+++|+ +++|+|||||||||+|+|.+++.
T Consensus 111 ~g~~s~~l~LR-k~ldLyaNvRPvr~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (474)
T PRK07362 111 GGIRSLNVALR-QIFDLYSCVRPCRYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIKHLNEEVIPAS 189 (474)
T ss_pred cCccchHHHHH-HHcCCceeeeEeeccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhccccccccccccc
Confidence 367799999 99999999 889999987 68999999999999999987431
Q ss_pred --------cCceEEEeEeecHHHHHHHHHHHHHHHHhC--CCCcEEEEecCCccccchHHHHHHHHHHHh-h--------
Q psy559 164 --------VDGVVESMKIITAANSYRLSKYAFEYAKKF--GRKKVTTVHKANIMKISDGLFLEISRKVAK-E-------- 224 (376)
Q Consensus 164 --------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r--~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-e-------- 224 (376)
..+.++++++|||++++||+|+||+||++| +|||||+|||+|||++|+|+|++|+.|+++ +
T Consensus 190 ~~~~~~~~~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~~evA~~~~~~~~v~~ 269 (474)
T PRK07362 190 PELGKRQIPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWGYELATTEFRDECVTE 269 (474)
T ss_pred ccccccccccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHHHHHHHHhhhhhhhhh
Confidence 123578999999999999999999999998 478999999999999999999998889986 4
Q ss_pred -----------CCC------------------------------------------------eeeeeeeHHHHHHHHHhC
Q psy559 225 -----------YPE------------------------------------------------IEHNDMIIDNTCMQLVSN 245 (376)
Q Consensus 225 -----------yP~------------------------------------------------I~~e~~~vD~~~~~Lv~~ 245 (376)
||+ |++++++||++|||||++
T Consensus 270 ~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vDa~a~~lv~~ 349 (474)
T PRK07362 270 RESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLVDDRIADSIFQQIQTR 349 (474)
T ss_pred hhhhhhcccccCccccccccccccccccccccccccccccccccccccchhhccccccCCCcceeehHHHHHHHHHHHhC
Confidence 444 778999999999999999
Q ss_pred CCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHH
Q psy559 246 PKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMK 325 (376)
Q Consensus 246 P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~ 325 (376)
|++||||||+|||||||||++|+++|||||+||+|||++.+|||| +|||||||||||+|||+|+|||++|||+|||+++
T Consensus 350 P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~~a~FEp-vHGSAPdIAGk~iANP~A~ILS~aMML~~LG~~~ 428 (474)
T PRK07362 350 PQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDNAAIFEA-THGTAPKHAGLDRINPGSVILSGVMMLEYLGWQE 428 (474)
T ss_pred hhhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCCceeeec-CCCCchhhcCCCCcCcHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCC-------CCCCHHHHHHHHHHH
Q psy559 326 HASIIKLAIEKTINEDKIHTPDLG-------GTATSIDVVQNIIKL 364 (376)
Q Consensus 326 ~A~~I~~AV~~~l~~~~~~T~Dlg-------G~~sT~e~~daV~~~ 364 (376)
+|++|++||.+++++| .+|+||| |.+||+||+++|+++
T Consensus 429 ~A~~I~~AV~~vl~~g-~~T~Dlg~~~~~~~~~~sT~E~~~aIi~~ 473 (474)
T PRK07362 429 AADLITKGLSAAIANK-QVTYDLARLMEPPVDPLSCSEFAEAIISH 473 (474)
T ss_pred HHHHHHHHHHHHHHcC-CcccCCCCccccCCCCcCHHHHHHHHHhc
Confidence 9999999999999876 8999999 578999999999976
No 22
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=2.5e-100 Score=759.36 Aligned_cols=313 Identities=45% Similarity=0.690 Sum_probs=292.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHHHcC----CCeeEEEEEccccCCCC---CChHHHHHHHHhcCeEEEcccccCCCC--c
Q psy559 45 AVTMLPGGGIGPELMSYVKEVFRYAG----VPVDFETVQIDPKSDSN---DDLEYAITSIRRNGVAIKGNIETGSLD--S 115 (376)
Q Consensus 45 ~I~vipGDGIGpEV~~aa~~Vl~a~~----~~ie~~~~~~g~~~~~~---~~~~~~~~~~~~~dail~G~i~~p~~~--~ 115 (376)
||++|||||||||||+++++||+++. ++++|+++++|..++++ ..|++++++|+++|++||||+++|... +
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~~~~ 80 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPPGIR 80 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSSSHS
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEcccccccccccc
Confidence 79999999999999999999999985 88999999999988754 349999999999999999999999742 3
Q ss_pred hh--hHHHhhhhcccEee-----cc--cccccCCC-----CccEEEEccCCcceeecccccccCc-----eEEEeEeecH
Q psy559 116 LW--TLKLCRLILRVIAM-----MI--LSVRCRQQ-----GIDIVIVRQNTEGEYAMLEHESVDG-----VVESMKIITA 176 (376)
Q Consensus 116 ~~--~~~LR~~~ldLyan-----~~--pg~~~~~~-----~iDivivREnteG~Y~g~e~~~~~~-----va~~~~~~Tr 176 (376)
+. ++.|| ++||||+| ++ ++.+++.+ ++|++||||||||+|+|.+++..++ +++++++|||
T Consensus 81 ~~~~l~~lR-~~ldl~anvRp~~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~~~~~~~~a~~~~~~t~ 159 (348)
T PF00180_consen 81 SENGLLKLR-KELDLYANVRPVRSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGDGGTPDEVAIDTKVITR 159 (348)
T ss_dssp HHHHHHHHH-HHTTHHEEEEEEEEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECSEEEGSSEEEEEEEEEH
T ss_pred cHHHHHHHH-HhcccceeeEEEEEeccccccccccccccCcceEEEecccccCcccCCCCceeeccCCCceEEEeecccc
Confidence 44 58999 99999999 66 45566654 6999999999999999999887655 8999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-hCCCeeeeeeeHHHHHHHHHhCCCCccEEecC
Q psy559 177 ANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-EYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMP 255 (376)
Q Consensus 177 ~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~ 255 (376)
++++||+|+||++|++|+||+||++||+|+|+.++ +|+++|+||++ +||+|++++++||+++|+||++|++||||||+
T Consensus 160 ~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~yp~I~~~~~~vD~~~~~Lv~~P~~fdViv~~ 238 (348)
T PF00180_consen 160 EGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEYPDIEVEHMLVDAAAMQLVKNPEQFDVIVTP 238 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTHTTSEEEEEEHHHHHHHHHHSGGGESEEEEE
T ss_pred chhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhcceeEeeeeechhhhheeecCCcceeEEeec
Confidence 99999999999999999999999999999999998 99999999998 99999999999999999999999999999999
Q ss_pred CcchhhHhhhhhhhcCCcccccccccC-CCceeeccCCCCccccccCCCccchhHHHHHHHHHHHH-cCcHHHHHHHHHH
Q psy559 256 NLYGAITSNVICGLIGGAGLISGKNYG-DHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH-LGHMKHASIIKLA 333 (376)
Q Consensus 256 NlfGDILSDlaa~l~GglGl~psanig-~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~-lg~~~~A~~I~~A 333 (376)
|||||||||++++++||+||+||+||| +.+++||| +|||||||+|||+|||+|+|||++|||+| ||++++|++|++|
T Consensus 239 Nl~GDIlSDl~a~l~G~lGl~psanig~~~~a~fEp-~HGSApdiaGk~~aNP~a~Ils~a~mL~~~lg~~~~a~~i~~A 317 (348)
T PF00180_consen 239 NLFGDILSDLAAGLVGGLGLAPSANIGPDGHAMFEP-VHGSAPDIAGKGIANPIAMILSAAMMLEHSLGLPEAADAIEKA 317 (348)
T ss_dssp HHHHHHHHHHHHHHHTSGGGEEEEEEETSSEEEEEE-SSTTTGGGTTSSHS-THHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred chhHHHHHHHhhhcCCChhhhhhhccCccccccccc-cccccccccCCcccCcHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999999999999999999999999999 78999999 99999999999999999999999999999 9999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCC----CHHHHHHHH
Q psy559 334 IEKTINEDKIHTPDLGGTA----TSIDVVQNI 361 (376)
Q Consensus 334 V~~~l~~~~~~T~DlgG~~----sT~e~~daV 361 (376)
|.+++++ +++|+||||++ +|+||+|+|
T Consensus 318 v~~~l~~-g~~T~Dlgg~~~~~~~T~e~~daV 348 (348)
T PF00180_consen 318 VEKVLEE-GIRTPDLGGSATTAVSTEEFGDAV 348 (348)
T ss_dssp HHHHHHT-TEEBGGGHTTTCEEBHHHHHHHHH
T ss_pred HHHHHHc-CCCCccccCCCCCCCCHHHHHhhC
Confidence 9999988 69999999999 999999997
No 23
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=8.3e-93 Score=709.61 Aligned_cols=315 Identities=21% Similarity=0.228 Sum_probs=285.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCC------
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSL------ 113 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~------ 113 (376)
+.+|++||||||||||+++++.+|.+..++++|+++++|.+.+.++ .|++++++|+++|++||||+++|..
T Consensus 7 ~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~~~~~~~ 86 (402)
T PRK08299 7 KNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDEARVKEF 86 (402)
T ss_pred CCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCccccccc
Confidence 3478999999999999999999999999999999999999887554 3899999999999999999999942
Q ss_pred -----CchhhHHHhhhhcccEee---c--------ccccccCCCCccEEEEccCCcceeecccccc------------cC
Q psy559 114 -----DSLWTLKLCRLILRVIAM---M--------ILSVRCRQQGIDIVIVRQNTEGEYAMLEHES------------VD 165 (376)
Q Consensus 114 -----~~~~~~~LR~~~ldLyan---~--------~pg~~~~~~~iDivivREnteG~Y~g~e~~~------------~~ 165 (376)
.++.++.|| |+||||+| . +||++ .+++||||||||+|+|.++.. .+
T Consensus 87 ~~~~~~~s~n~~LR-k~ldLyaNiRPv~~k~i~~~~pg~~-----~~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~ 160 (402)
T PRK08299 87 NLKKMWKSPNGTIR-NILGGTVFREPIICKNVPRLVPGWT-----KPIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGED 160 (402)
T ss_pred CccccccCchHHHH-HHcCCeEEEEeeecccccccCCCCC-----CCEEEEecccCCcccceeEEeccCccceeeeecCC
Confidence 245699999 99999999 2 44443 259999999999999987654 12
Q ss_pred c------------eEEEeEe-ecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-hCC-----
Q psy559 166 G------------VVESMKI-ITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-EYP----- 226 (376)
Q Consensus 166 ~------------va~~~~~-~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-eyP----- 226 (376)
| .++++++ +||++++||+|+||+||++|+ +|||+|||+|||+.+||||+++|+||++ +||
T Consensus 161 g~~~e~~~~~~~~~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~-~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~~ 239 (402)
T PRK08299 161 GEPIEHEVHDFPGAGVAMGMYNLDESIRDFARASFNYGLDRK-YPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFEA 239 (402)
T ss_pred CccccceecccccCceeEEEeecHHHHHHHHHHHHHHHHHcC-CCEEEECCCCcchhhhHHHHHHHHHHHHHhCcccccc
Confidence 2 1335555 999999999999999999985 5799999999999999999999999995 899
Q ss_pred -CeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCc--eeeccCCCCcccc-----
Q psy559 227 -EIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHY--AVFEPGTRNTGTA----- 298 (376)
Q Consensus 227 -~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~~HGsApd----- 298 (376)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+|++||+|+|++. +|||| +||||||
T Consensus 240 ~~i~~~~~~vDa~~~~lv~~P~~f-Vivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp-~HGSAPD~~~~~ 317 (402)
T PRK08299 240 AGITYEHRLIDDMVASALKWEGGY-VWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEA-AHGTVTRHYRQH 317 (402)
T ss_pred CcEEEEEeeHHHHHHHHHhCcCCc-EEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEec-CCCCCccccccc
Confidence 59999999999999999999999 99999999999999999999999999999999874 89999 9999999
Q ss_pred ccCCCc-cchhHHHHHHHHHHHHcCc-------HHHHHHHHHHHHHHHHcCCCCCCCCC-------CCCCHHHHHHHHHH
Q psy559 299 IAGKNI-ANPIAMLNASVDMLEHLGH-------MKHASIIKLAIEKTINEDKIHTPDLG-------GTATSIDVVQNIIK 363 (376)
Q Consensus 299 iaGk~i-ANP~a~IlS~amML~~lg~-------~~~A~~I~~AV~~~l~~~~~~T~Dlg-------G~~sT~e~~daV~~ 363 (376)
|+|||+ |||+|||||++|||+|||+ .++|++|++||.+++++| ++|+||| |.+||+||+|+|++
T Consensus 318 IaGk~~~ANP~A~IlS~amML~~LG~~~~~~~l~~~a~~I~~Av~~~l~~g-~~T~Dlg~~~g~~~g~~tT~e~~daIi~ 396 (402)
T PRK08299 318 QKGEETSTNPIASIFAWTRGLAHRGKLDGNPELVKFADTLEKVCIETVESG-FMTKDLALLVGPDQKWLTTEEFLDAIDE 396 (402)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHcC-CcCccchhccCCCCCCcCHHHHHHHHHH
Confidence 999997 9999999999999999999 889999999999999885 8999995 45899999999999
Q ss_pred HHhh
Q psy559 364 LVQT 367 (376)
Q Consensus 364 ~l~~ 367 (376)
+|.+
T Consensus 397 ~l~~ 400 (402)
T PRK08299 397 NLEK 400 (402)
T ss_pred HHHh
Confidence 9954
No 24
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.5e-89 Score=687.54 Aligned_cols=316 Identities=16% Similarity=0.143 Sum_probs=285.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCC-------
Q psy559 44 NAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSL------- 113 (376)
Q Consensus 44 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~------- 113 (376)
-.+++|+|||||+|++++++++|.+..++++|+++++|.++++++ .|++++++|+++|++||||+++|..
T Consensus 10 ~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~~~~~~~~~ 89 (410)
T PLN00103 10 NPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFG 89 (410)
T ss_pred CCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCcccccccccC
Confidence 468999999999999999999999999999999999999887654 3899999999999999999999942
Q ss_pred ----CchhhHHHhhhhcccEee-------ccc----ccccCC---------------------CCccEEEEccCCcceee
Q psy559 114 ----DSLWTLKLCRLILRVIAM-------MIL----SVRCRQ---------------------QGIDIVIVRQNTEGEYA 157 (376)
Q Consensus 114 ----~~~~~~~LR~~~ldLyan-------~~p----g~~~~~---------------------~~iDivivREnteG~Y~ 157 (376)
.++.|++|| ++||||+| ++| |++++. +++|+|||||||||+|
T Consensus 90 ~~~~~~s~n~~lR-k~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivRENTEg~y- 167 (410)
T PLN00103 90 LKQMWKSPNGTIR-NILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGKDEKT- 167 (410)
T ss_pred ccccccCchHHHH-HHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEecCCCcee-
Confidence 145599999 99999999 344 777664 6789999999999999
Q ss_pred ccccccc---CceEEEeEee-cHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-----hCC--
Q psy559 158 MLEHESV---DGVVESMKII-TAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-----EYP-- 226 (376)
Q Consensus 158 g~e~~~~---~~va~~~~~~-Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-----eyP-- 226 (376)
+++.. ...+++++++ |+++++||+|+||++|++|+ ++||++||+|||+.+||+|+++|+||++ +||
T Consensus 168 --e~~~~~~~g~~~v~~~~~~T~~~~~Riar~AFe~A~~r~-~~vt~v~KaNVlk~~dglf~~~~~eva~~~~~~eyp~~ 244 (410)
T PLN00103 168 --ELEVYNFTGAGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAA 244 (410)
T ss_pred --EEEeeccCCCcceEEEEEcCHHHHHHHHHHHHHHHHhcC-CcEEEECCCCCchhhHHHHHHHHHHHHHhhhhhhCCCC
Confidence 22211 1235578887 99999999999999999985 5699999999999999999999999986 799
Q ss_pred CeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCc--eeeccCCCCcccc------
Q psy559 227 EIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHY--AVFEPGTRNTGTA------ 298 (376)
Q Consensus 227 ~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~~HGsApd------ 298 (376)
+|++++++||++||+||++|++| ||||+|||||||||++|+++|||||+||+|+|++. +|||| +||||||
T Consensus 245 ~I~~~~~lVDa~a~~lv~~P~~f-Viv~~NLfGDIlSDlaA~l~GslGlapSanig~~~~~~~FEp-~HGSApd~~~~~d 322 (410)
T PLN00103 245 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQ 322 (410)
T ss_pred ceEEEEeEHHHHHHHHhcCCCCC-EEEEcccchHHHHHHHHHhcCchhhhhccccCCCCCcEEEeC-CCCcCcccchhhh
Confidence 89999999999999999999999 99999999999999999999999999999999863 79999 9999998
Q ss_pred ccCCCccchhHHHHHHHHHHHHc-------CcHHHHHHHHHHHHHHHHcCCCCCCCC-----CCC------CCHHHHHHH
Q psy559 299 IAGKNIANPIAMLNASVDMLEHL-------GHMKHASIIKLAIEKTINEDKIHTPDL-----GGT------ATSIDVVQN 360 (376)
Q Consensus 299 iaGk~iANP~a~IlS~amML~~l-------g~~~~A~~I~~AV~~~l~~~~~~T~Dl-----gG~------~sT~e~~da 360 (376)
|+|||+|||+|+|||++|||+|| |+.++|++|++||.+++++| .+|+|| ||+ ++|+||+|+
T Consensus 323 iaGk~iANP~A~IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~l~~G-~~T~Dl~~~~~gg~~~~~~~~~T~e~~da 401 (410)
T PLN00103 323 KGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESG-KMTKDLALLIHGPKVSRDQYLNTEEFIDA 401 (410)
T ss_pred hcCCCccChHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHcC-CCCcccccccCCCcccCCCCcCHHHHHHH
Confidence 89999999999999999999999 89999999999999999886 899999 454 899999999
Q ss_pred HHHHHhh
Q psy559 361 IIKLVQT 367 (376)
Q Consensus 361 V~~~l~~ 367 (376)
|+++|+.
T Consensus 402 V~~~l~~ 408 (410)
T PLN00103 402 VAEELKA 408 (410)
T ss_pred HHHHHHh
Confidence 9999954
No 25
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=1.5e-84 Score=650.77 Aligned_cols=315 Identities=21% Similarity=0.216 Sum_probs=282.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHH-Hc---CCCeeEEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCCCC-
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFR-YA---GVPVDFETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSLD- 114 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~-a~---~~~ie~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~~~- 114 (376)
...+..+.|| |.++.+.+.++ .+ -++++|+++++|.+.+++++ |++++++|+++|++||||++||...
T Consensus 6 ~~p~v~~~g~----em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~~ 81 (409)
T TIGR00127 6 ANPVVEMDGD----EMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEAR 81 (409)
T ss_pred cCCeEEecCc----HHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCcccc
Confidence 3467899999 77666655444 33 57999999999999886653 8999999999999999999999642
Q ss_pred ----------chhhHHHhhhhcccEee-----------cccccccC-----------CCCccEEEEccCC-cceeecccc
Q psy559 115 ----------SLWTLKLCRLILRVIAM-----------MILSVRCR-----------QQGIDIVIVRQNT-EGEYAMLEH 161 (376)
Q Consensus 115 ----------~~~~~~LR~~~ldLyan-----------~~pg~~~~-----------~~~iDivivREnt-eG~Y~g~e~ 161 (376)
+++|++|| +.|||||| ++||++++ ++++|++|+|||| ||+|+|.++
T Consensus 82 ~~~~~l~k~~~S~n~~lR-~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~ 160 (409)
T TIGR00127 82 VEEFKLKKMWKSPNGTIR-NILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDG 160 (409)
T ss_pred ccccccccccCCccHHHH-HHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCC
Confidence 56799999 99999999 34676654 6899999999999 999999987
Q ss_pred cc------c-----CceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHH-hhCC---
Q psy559 162 ES------V-----DGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVA-KEYP--- 226 (376)
Q Consensus 162 ~~------~-----~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva-~eyP--- 226 (376)
.. . ++++.++ ++||++++||+|+||+||++|+ ++||++||+|||+.+||+|+++|+||+ ++||
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~-~~T~~~~eRIar~AF~~A~~~~-~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~ 238 (409)
T TIGR00127 161 TQKVTLKVYDFEEGGGVAMAM-YNTDESIEGFAHSSFQLALEKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKF 238 (409)
T ss_pred CcccceeeeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHcC-CCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccc
Confidence 33 1 4677766 8999999999999999999985 579999999999999999999999996 8999
Q ss_pred ---CeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCce--eeccCCCCccccc--
Q psy559 227 ---EIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYA--VFEPGTRNTGTAI-- 299 (376)
Q Consensus 227 ---~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~a--~FEp~~HGsApdi-- 299 (376)
+|++++++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++.+ +||| +|||||||
T Consensus 239 ~~~~I~~~~~lVDa~~m~lv~~P~~f-Viv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp-~HGSApdi~~ 316 (409)
T TIGR00127 239 EALGIWYEHRLIDDMVAQALKSEGGF-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEA-AHGTVTRHYR 316 (409)
T ss_pred cCCCEEEEEeeHHHHHHHHhhCCCCc-EEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEecc-ccCCCcccch
Confidence 89999999999999999999999 999999999999999999999999999999998765 6699 99999998
Q ss_pred ---cCC-CccchhHHHHHHHHHHHHcC-------cHHHHHHHHHHHHHHHHcCCCCCCCC----CCC-------CCHHHH
Q psy559 300 ---AGK-NIANPIAMLNASVDMLEHLG-------HMKHASIIKLAIEKTINEDKIHTPDL----GGT-------ATSIDV 357 (376)
Q Consensus 300 ---aGk-~iANP~a~IlS~amML~~lg-------~~~~A~~I~~AV~~~l~~~~~~T~Dl----gG~-------~sT~e~ 357 (376)
||| ++|||+|+|||++|||+|+| +.++|++|++||.+++++| ++|+|| ||+ ++|+||
T Consensus 317 ~~iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g-~~T~Dl~~~~GG~~~~~~~~~~T~e~ 395 (409)
T TIGR00127 317 MYQKGQETSTNSIASIFAWSRGLAHRAKLDNNPELSKFANILESACINTVEAG-IMTKDLALILGGSPVERSAYLNTEEF 395 (409)
T ss_pred hhhCCCCCccChHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcC-CcccccccccCCCcccCCCCcCHHHH
Confidence 896 89999999999999999986 6899999999999999885 999999 888 899999
Q ss_pred HHHHHHHHhh
Q psy559 358 VQNIIKLVQT 367 (376)
Q Consensus 358 ~daV~~~l~~ 367 (376)
+|+|+++|++
T Consensus 396 ~daV~~~L~~ 405 (409)
T TIGR00127 396 IDAVEERLKK 405 (409)
T ss_pred HHHHHHHHHH
Confidence 9999999954
No 26
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=6.6e-84 Score=646.69 Aligned_cols=315 Identities=20% Similarity=0.221 Sum_probs=281.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHH-Hc---CCCeeEEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCCC--
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFR-YA---GVPVDFETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSL-- 113 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~-a~---~~~ie~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~~-- 113 (376)
+.++..+.|| |.++.+-+.+. .+ -++++|+++++|...+++++ |++++++|+++|++||||++||..
T Consensus 9 ~~~~v~~~~~----em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~~~~ 84 (413)
T PTZ00435 9 KNPVVELDGD----EMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDEAR 84 (413)
T ss_pred cCCeEEeccc----HHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCcccc
Confidence 4568899999 66665555443 32 57999999999999886653 899999999999999999999964
Q ss_pred ---------CchhhHHHhhhhcccEee---c--------ccccccC-----------CCCccEEEEccCC-cceeecc-c
Q psy559 114 ---------DSLWTLKLCRLILRVIAM---M--------ILSVRCR-----------QQGIDIVIVRQNT-EGEYAML-E 160 (376)
Q Consensus 114 ---------~~~~~~~LR~~~ldLyan---~--------~pg~~~~-----------~~~iDivivREnt-eG~Y~g~-e 160 (376)
.+++|++|| +.|||||| . +||++++ ++++|++|+|||| ||+|.+. +
T Consensus 85 ~~~~~l~~~~~S~n~~LR-~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~~g 163 (413)
T PTZ00435 85 VKEFNLKKMWKSPNGTIR-NILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPADG 163 (413)
T ss_pred ccccccccccCCchHHHH-HHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecCCC
Confidence 246699999 99999999 2 5677654 6899999999999 9999998 4
Q ss_pred cc---------ccCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-hCC----
Q psy559 161 HE---------SVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-EYP---- 226 (376)
Q Consensus 161 ~~---------~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-eyP---- 226 (376)
+. ..++++.++ +|||++++||+|+||+||++|+ ++||++||+|||+.+||||+++|+||++ +||
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~-~~Tr~~~eRIar~AF~~A~~r~-~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~~ 241 (413)
T PTZ00435 164 SEPQRVDVFDFKGGGVAMGM-YNTDESIEGFARSCFQYALDRK-MPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFE 241 (413)
T ss_pred CcceeeeeeccCCCCeeEEE-EeCHHHHHHHHHHHHHHHHHcC-CCEEEECCCCcchhhHHHHHHHHHHHHHHhCccccc
Confidence 43 236777666 9999999999999999999985 4799999999999999999999999985 799
Q ss_pred --CeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCc--eeeccCCCCccccc---
Q psy559 227 --EIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHY--AVFEPGTRNTGTAI--- 299 (376)
Q Consensus 227 --~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~~HGsApdi--- 299 (376)
+|++++++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++. ++||| +|||||||
T Consensus 242 ~~~I~~~~~lVDa~~m~lv~~P~~f-ViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp-~HGSApdi~~~ 319 (413)
T PTZ00435 242 KAGLWYEHRLIDDMVAQAIKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEA-AHGTVTRHYRQ 319 (413)
T ss_pred cCCEEEEEeeHHHHHHHHhhCCCCe-EEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEc-CcCCccccchh
Confidence 99999999999999999999999 99999999999999999999999999999999874 99999 99999998
Q ss_pred --cCC-CccchhHHHHHHHHHHHHcCc-------HHHHHHHHHHHHHHHHcCCCCCCCCC----CC--------CCHHHH
Q psy559 300 --AGK-NIANPIAMLNASVDMLEHLGH-------MKHASIIKLAIEKTINEDKIHTPDLG----GT--------ATSIDV 357 (376)
Q Consensus 300 --aGk-~iANP~a~IlS~amML~~lg~-------~~~A~~I~~AV~~~l~~~~~~T~Dlg----G~--------~sT~e~ 357 (376)
+|| ++|||+|+|||++|||+|||+ .++|++|++||.+++++| ++|+||| |+ ++|+||
T Consensus 320 ~iaGk~~~ANP~A~Ils~ammL~~lg~~~~~~~~~~~A~~ie~Av~~~i~~g-~~T~Dlg~~~~G~~~~~~~~~~~T~e~ 398 (413)
T PTZ00435 320 HQKGKETSTNSIASIFAWTRGLAHRAKLDNNQELVKFCQALERSCIETIEAG-FMTKDLAICVHGSSKVTRSDYLNTEEF 398 (413)
T ss_pred hhcCCCCccChHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcC-CCccccccccCCCccccCCCCcCHHHH
Confidence 886 789999999999999999995 688999999999999885 8999997 75 899999
Q ss_pred HHHHHHHHhh
Q psy559 358 VQNIIKLVQT 367 (376)
Q Consensus 358 ~daV~~~l~~ 367 (376)
+|+|+++|++
T Consensus 399 ~daV~~~L~~ 408 (413)
T PTZ00435 399 IDKVAEKLKK 408 (413)
T ss_pred HHHHHHHHHH
Confidence 9999999965
No 27
>KOG0786|consensus
Probab=100.00 E-value=2.5e-83 Score=598.38 Aligned_cols=322 Identities=30% Similarity=0.439 Sum_probs=293.8
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCCC
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSLD 114 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~~ 114 (376)
++|+|+++|||||||||+..+++||+++ +++|+|++.++|+.+.+.. .|+|++++.+++|++|+|++|+|.|+
T Consensus 3 ~~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~ 82 (363)
T KOG0786|consen 3 KRYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWD 82 (363)
T ss_pred CcceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccC
Confidence 5789999999999999999999999998 5889999999999998764 38999999999999999999999774
Q ss_pred ----chh--hHHHhhhhcccEee-----cccccc-------cCCCCccEEEEccCCcceeecccccc-cCceEEEeEeec
Q psy559 115 ----SLW--TLKLCRLILRVIAM-----MILSVR-------CRQQGIDIVIVRQNTEGEYAMLEHES-VDGVVESMKIIT 175 (376)
Q Consensus 115 ----~~~--~~~LR~~~ldLyan-----~~pg~~-------~~~~~iDivivREnteG~Y~g~e~~~-~~~va~~~~~~T 175 (376)
+++ ++.|| +.|.+||| ..|.+. ...+++|++||||+|+|+|+|..... .+++++++.+|+
T Consensus 83 ~~~lrpe~gll~ir-~~lkvfanlrp~~~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~eng~gva~dte~Ya 161 (363)
T KOG0786|consen 83 KNHLRPEMGLLKIR-RDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRNENGEGVAFDTEIYA 161 (363)
T ss_pred cCCcChhhhHHHHH-HHHHHHhcCCcchhhHhhhccccccHHHhcCcceEEeeeecCceeecCcccCCCcceeecccccc
Confidence 344 89999 99999999 334331 13579999999999999999986543 367999999999
Q ss_pred HHHHHHHHHHHHHHHHhCC-CCcEEEEecCCccccchHHHHHHHHHH-HhhCCCeeeeeeeHHHHHHHHHhCCCCcc-EE
Q psy559 176 AANSYRLSKYAFEYAKKFG-RKKVTTVHKANIMKISDGLFLEISRKV-AKEYPEIEHNDMIIDNTCMQLVSNPKQFD-VM 252 (376)
Q Consensus 176 r~~~eRiar~AFe~A~~r~-rk~Vt~v~KaNvl~~sdglf~~~~~ev-a~eyP~I~~e~~~vD~~~~~Lv~~P~~fd-Vi 252 (376)
-+++.||+|.||+.|++|+ ..++|++||+||+. ++.|||+.+.+. +.|||++++.|++||+++|+||++|.+|| +|
T Consensus 162 ~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~k~EyP~l~l~hqliDsAAM~Lvk~P~~lng~i 240 (363)
T KOG0786|consen 162 AHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALKSEYPDLELSHQLIDSAAMQLVKDPKQLNGTI 240 (363)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHHHhhCCCcchhhhhhhHHHHHHhcCchhcCceE
Confidence 9999999999999999873 47999999999998 569999988865 89999999999999999999999999999 99
Q ss_pred ecCCcchhhHhhhhhhhcCCcccccccccC-----C-CceeeccCCCCccccccCCCccchhHHHHHHHHHHHH-cCcHH
Q psy559 253 VMPNLYGAITSNVICGLIGGAGLISGKNYG-----D-HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH-LGHMK 325 (376)
Q Consensus 253 V~~NlfGDILSDlaa~l~GglGl~psanig-----~-~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~-lg~~~ 325 (376)
||.|+|||||||+++.+.||+||.||++++ + .+++||| +|||||||+||+++||+|+|||++|||++ ||+++
T Consensus 241 vT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~~gL~EP-iHGSAPDiagk~kvNPlaTILSAamlLkygLn~pk 319 (363)
T KOG0786|consen 241 VTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESGPGLFEP-IHGSAPDIAGKDKVNPLATILSAAMLLKYGLNEPK 319 (363)
T ss_pred EeccchhhhhccccccccCccccccchhhcCCcccccCCccccc-CCCCCCCcCCCCccChHHHHHHHHHHHHhcCCChh
Confidence 999999999999999999999999999997 2 4799999 99999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q psy559 326 HASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQT 367 (376)
Q Consensus 326 ~A~~I~~AV~~~l~~~~~~T~DlgG~~sT~e~~daV~~~l~~ 367 (376)
+|++||+||.++|+. +++|.||||..||.+.+++|.+++.+
T Consensus 320 eakaIEdAV~kvLd~-G~rTgDlgg~~st~~~~kav~EEv~K 360 (363)
T KOG0786|consen 320 EAKAIEDAVVKVLDK-GFRTGDLGGPGSTLVGCKAVGEEVLK 360 (363)
T ss_pred hHHHHHHHHHHHHhc-cccccccCCCCcchhhHHHHHHHHHH
Confidence 999999999999976 49999999999999999999888765
No 28
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=4.7e-82 Score=640.40 Aligned_cols=317 Identities=18% Similarity=0.201 Sum_probs=285.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCCCC-----
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSLD----- 114 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~~~----- 114 (376)
+..|++|+|||||+||++..+++|....++++|+++++|.+.+++++ |.+++++++++|++||||++||...
T Consensus 77 ~~piv~~~GDem~r~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~ 156 (483)
T PLN03065 77 QNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 156 (483)
T ss_pred cCCeEEecCCcchHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCcccccccc
Confidence 45689999999999999999999999999999999999999887653 8999999999999999999999642
Q ss_pred ------chhhHHHhhhhcccEee-----------cccccccC-----------CCCccEEEE----------ccCCccee
Q psy559 115 ------SLWTLKLCRLILRVIAM-----------MILSVRCR-----------QQGIDIVIV----------RQNTEGEY 156 (376)
Q Consensus 115 ------~~~~~~LR~~~ldLyan-----------~~pg~~~~-----------~~~iDiviv----------REnteG~Y 156 (376)
+++|++|| +.||||+| ++||++.| ++++|++|+ |||||+
T Consensus 157 ~lk~~w~SpN~tiR-~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~-- 233 (483)
T PLN03065 157 GLKSMWRSPNGTIR-NILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNA-- 233 (483)
T ss_pred ccccccCCccHHHH-HHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCC--
Confidence 46699999 99999999 34565543 567888887 888876
Q ss_pred eccccc----ccCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHH-----hhCC-
Q psy559 157 AMLEHE----SVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVA-----KEYP- 226 (376)
Q Consensus 157 ~g~e~~----~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva-----~eyP- 226 (376)
+.++. ..++++.++ ++|+++++||+|+||+||++| +++||++||+||||.+||+|+++|+||+ ++||
T Consensus 234 -~~e~~v~~f~~~gva~~~-~nT~~sieriAr~AF~yA~~r-k~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~ 310 (483)
T PLN03065 234 -PVELDVYDFKGPGVALAM-YNVDESIRAFAESSMAMALQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEE 310 (483)
T ss_pred -cceeEeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHc-CCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCC
Confidence 44433 236788875 899999999999999999998 4579999999999999999999999998 4599
Q ss_pred -CeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCc--eeeccCCCCcccc-----
Q psy559 227 -EIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHY--AVFEPGTRNTGTA----- 298 (376)
Q Consensus 227 -~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~~HGsApd----- 298 (376)
+|+++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++. ++||| +||||||
T Consensus 311 ~~I~~e~~lIDa~~~~lvk~P~~F-Viv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa-~HGSapd~~~~~ 388 (483)
T PLN03065 311 HSIWYEHRLIDDMVAYAVKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEA-AHGTVTRHFRLH 388 (483)
T ss_pred CCceEEeeeHHHHHHHHHhCCCCc-EEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEec-CcCcCccccchh
Confidence 69999999999999999999999 99999999999999999999999999999999875 69999 9999999
Q ss_pred ccCCCc-cchhHHHHHHHHHHHHcCc-------HHHHHHHHHHHHHHHHcCCCCCCCCC----CC-------CCHHHHHH
Q psy559 299 IAGKNI-ANPIAMLNASVDMLEHLGH-------MKHASIIKLAIEKTINEDKIHTPDLG----GT-------ATSIDVVQ 359 (376)
Q Consensus 299 iaGk~i-ANP~a~IlS~amML~~lg~-------~~~A~~I~~AV~~~l~~~~~~T~Dlg----G~-------~sT~e~~d 359 (376)
++||++ |||+|+|+|++|||+|+|. .++|++|++||.+++++| ++|+||| |. ++|+||+|
T Consensus 389 iaGk~t~ANPiA~IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~G-~~T~DLg~~~~G~~~~~~~~~~T~ef~d 467 (483)
T PLN03065 389 QKGQETSTNSIASIFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVESG-KMTKDLAILIHGPKVSREFYLNTEEFID 467 (483)
T ss_pred ccCCCCCcChHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHcC-CcccccccccCCCcccCCCCcCHHHHHH
Confidence 899995 9999999999999999987 679999999999999876 8899996 63 89999999
Q ss_pred HHHHHHhhc
Q psy559 360 NIIKLVQTN 368 (376)
Q Consensus 360 aV~~~l~~~ 368 (376)
+|+++|++.
T Consensus 468 aV~~~L~~~ 476 (483)
T PLN03065 468 AVAQTLATK 476 (483)
T ss_pred HHHHHHHHH
Confidence 999999643
No 29
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2.2e-76 Score=577.93 Aligned_cols=321 Identities=32% Similarity=0.466 Sum_probs=297.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHHc-------CCCeeEEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCC
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRYA-------GVPVDFETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGS 112 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~-------~~~ie~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~ 112 (376)
+..|.+|.||||||||++++.+|++++ ..+|+|.++++|.++++.++ |.++++.++++.+.+|||++||.
T Consensus 18 ~piiP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPv 97 (407)
T COG0538 18 KPIIPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPV 97 (407)
T ss_pred CcccceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCcc
Confidence 567899999999999999999999986 37899999999999987654 99999999999999999999996
Q ss_pred CC--chhhHHHhhhhcccEee-----cccccccCCC---CccEEEEccCCcceeeccccccc------------------
Q psy559 113 LD--SLWTLKLCRLILRVIAM-----MILSVRCRQQ---GIDIVIVRQNTEGEYAMLEHESV------------------ 164 (376)
Q Consensus 113 ~~--~~~~~~LR~~~ldLyan-----~~pg~~~~~~---~iDivivREnteG~Y~g~e~~~~------------------ 164 (376)
.. +|.|++|| +.||||+| .+||+|+|.+ .+|+||+|||||+.|.|.|+...
T Consensus 98 g~g~rSlNvtlR-q~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~~e~~~~ 176 (407)
T COG0538 98 GKGWRSLNVTLR-QILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLEDEMGVK 176 (407)
T ss_pred cccccCchHHHH-HHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhhcccccc
Confidence 53 88899999 99999999 6679999754 69999999999999999886421
Q ss_pred -----CceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhh--C------------
Q psy559 165 -----DGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKE--Y------------ 225 (376)
Q Consensus 165 -----~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~e--y------------ 225 (376)
++..+.++.|+++++.|++|.||+||.+++|+.||++||-|+||.|+|-|++|+.||+++ |
T Consensus 177 ~i~~pe~~GIgikp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~~~~~~~~~~ 256 (407)
T COG0538 177 KIRFPEDSGIGIKPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDEVVTGKEKFE 256 (407)
T ss_pred eEecCCCCceEEEecCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhcccccccccchhhh
Confidence 234578999999999999999999999999999999999999999999999999999865 2
Q ss_pred -CC----eeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccCCCCcccccc
Q psy559 226 -PE----IEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIA 300 (376)
Q Consensus 226 -P~----I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsApdia 300 (376)
.+ |.++++++|+|.+|++++|..||||.|.||.||++||.+|+++||+||+||+|||+.+++||| +|||||+++
T Consensus 257 ~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~~~~~~fEA-~HGTapk~a 335 (407)
T COG0538 257 LKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIGDGTAEFEA-THGTAPKYA 335 (407)
T ss_pred ccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceecCceEEEEe-ccCcccccc
Confidence 24 999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCC----C---CCCHHHHHHHHHHHHh
Q psy559 301 GKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLG----G---TATSIDVVQNIIKLVQ 366 (376)
Q Consensus 301 Gk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~Dlg----G---~~sT~e~~daV~~~l~ 366 (376)
||+.+||+|.|||+.|||+|+|+.++|+.|++|+.+++++ +..|+||. | ..+|+||+|+|+++|+
T Consensus 336 G~~~~Np~a~Ils~~~ml~~~Gw~eaa~li~~a~~~ti~~-~~vT~DlArl~~~~~~~v~tsEF~d~ii~~l~ 407 (407)
T COG0538 336 GKDSTNPIASILSGTMMLRHRGWLEAADLIEKAVEDTIES-GKVTYDLARLMGGAKRYLSTSEFADAIIENLK 407 (407)
T ss_pred CcCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-CceeHHHHHhhCCCccceeHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999988 59999994 4 4699999999999874
No 30
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=3e-67 Score=520.65 Aligned_cols=307 Identities=19% Similarity=0.193 Sum_probs=260.0
Q ss_pred EEcCCCCCHHHHHHHHHHHHH----cCCCee-EEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCCCC-----
Q psy559 48 MLPGGGIGPELMSYVKEVFRY----AGVPVD-FETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSLD----- 114 (376)
Q Consensus 48 vipGDGIGpEV~~aa~~Vl~a----~~~~ie-~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~~~----- 114 (376)
.+.|| |.++..-+.++. .-++++ |+++++|-+..+.+. .-++.++++++.+.+|+|+.||...
T Consensus 3 ~~~gd----emtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~ 78 (393)
T PLN00096 3 YVAGE----EMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRL 78 (393)
T ss_pred eecch----HHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhh
Confidence 46677 776666665553 257885 999999999888764 6678899999999999999999642
Q ss_pred ------chhhHHHhhhhccc-Eee----cccccccCCCCccEEEEccCCcceeecccccc------------c-------
Q psy559 115 ------SLWTLKLCRLILRV-IAM----MILSVRCRQQGIDIVIVRQNTEGEYAMLEHES------------V------- 164 (376)
Q Consensus 115 ------~~~~~~LR~~~ldL-yan----~~pg~~~~~~~iDivivREnteG~Y~g~e~~~------------~------- 164 (376)
+|+|.+|| +.||- ... .+++++ +.=...++|-|..-+|.|.. +... .
T Consensus 79 ~lk~~w~sPNgtiR-~~l~G~tvfR~pi~~~~i~-~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~ 155 (393)
T PLN00096 79 GLKKAWGSPNGAMR-RGWNGITISRDTIHIDGVE-LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIV 155 (393)
T ss_pred chhhhcCCCcHHHH-hhcCCceEeeCCEecCCCC-CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceE
Confidence 47799999 99998 554 555554 22246778888888888865 3110 0
Q ss_pred ------C--ceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHH-hhC----------
Q psy559 165 ------D--GVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVA-KEY---------- 225 (376)
Q Consensus 165 ------~--~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva-~ey---------- 225 (376)
. +.+.-.+.+|.+.++||+|+||+||++|+ ++||++||+||||++++||+ +|+||+ ++|
T Consensus 156 ~~~~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r~-~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~ 233 (393)
T PLN00096 156 VDDRTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDAG-IVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVM 233 (393)
T ss_pred EEEEecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHhC-CcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccC
Confidence 1 12234579999999999999999999984 56999999999999999998 999996 888
Q ss_pred -CCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCC---c--eeeccCCCCccccc
Q psy559 226 -PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH---Y--AVFEPGTRNTGTAI 299 (376)
Q Consensus 226 -P~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~---~--a~FEp~~HGsApdi 299 (376)
|+|+++|++||+|+||||++|++||||||+|||||||||++|+++|||||+||+|+|++ . ++||| +|||||||
T Consensus 234 ~p~V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp-~HGSApdi 312 (393)
T PLN00096 234 KSGDELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEA-SHGTVTDM 312 (393)
T ss_pred CCceEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEc-CCCChHHh
Confidence 78999999999999999999999999999999999999999999999999999999943 3 89999 99999999
Q ss_pred c-----CC-CccchhHHHHHHHHHHHHc----Cc----HHHHHHHHHHHHHHHHcCCCCCCCCCC--CCCHHHHHHHHHH
Q psy559 300 A-----GK-NIANPIAMLNASVDMLEHL----GH----MKHASIIKLAIEKTINEDKIHTPDLGG--TATSIDVVQNIIK 363 (376)
Q Consensus 300 a-----Gk-~iANP~a~IlS~amML~~l----g~----~~~A~~I~~AV~~~l~~~~~~T~DlgG--~~sT~e~~daV~~ 363 (376)
+ || ++|||+|+|||++|||+|+ |+ .++|++|++||.+++++| ++|+||+| .++|+||+|+|++
T Consensus 313 ag~~~~Gk~~~ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie~G-~~T~DL~g~~~~tT~ef~daI~~ 391 (393)
T PLN00096 313 DEARLRGEETSLNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFREG-RGTRDLCGAGGLTTEQFIDAVAE 391 (393)
T ss_pred hhhhhcCCCCccChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHhcC-CcCcCCCCCCCCCHHHHHHHHHH
Confidence 9 89 5999999999999999998 66 569999999999999886 89999955 7899999999998
Q ss_pred HH
Q psy559 364 LV 365 (376)
Q Consensus 364 ~l 365 (376)
+|
T Consensus 392 ~L 393 (393)
T PLN00096 392 EL 393 (393)
T ss_pred hC
Confidence 75
No 31
>KOG1526|consensus
Probab=99.98 E-value=5.6e-31 Score=251.96 Aligned_cols=318 Identities=20% Similarity=0.203 Sum_probs=258.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHH----cCCCeeEEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCCCC-
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRY----AGVPVDFETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSLD- 114 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a----~~~~ie~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~~~- 114 (376)
...|.-+.|| |.++..-+.++. .-+++++.++++|-+..+.+. .-++.+++.++++.+|+++.+|.+.
T Consensus 18 ~~pvVemdGD----EmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITPDEaR 93 (422)
T KOG1526|consen 18 ANPVVEMDGD----EMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITPDEAR 93 (422)
T ss_pred cCCeEEeccc----HHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCCcHHH
Confidence 3457888998 666666665553 357899999999999887764 5577788999999999999999652
Q ss_pred ----------chhhHHHhhhhcccEee----cccccccCCC--CccEEEEccCCcceeeccccc------------c---
Q psy559 115 ----------SLWTLKLCRLILRVIAM----MILSVRCRQQ--GIDIVIVRQNTEGEYAMLEHE------------S--- 163 (376)
Q Consensus 115 ----------~~~~~~LR~~~ldLyan----~~pg~~~~~~--~iDivivREnteG~Y~g~e~~------------~--- 163 (376)
+++|.++| ..|+-.+. ..|++|...+ ...|+|=|..-++.|-..... +
T Consensus 94 v~Ef~LkkMWkSPNGTIR-NILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~dg 172 (422)
T KOG1526|consen 94 VEEFNLKKMWKSPNGTIR-NILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPSDG 172 (422)
T ss_pred HHHhhhHHHhcCCCcchh-hhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEecCCC
Confidence 46699999 99998777 3333332211 355666666666666432100 0
Q ss_pred ------------cCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHH-hhCC----
Q psy559 164 ------------VDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVA-KEYP---- 226 (376)
Q Consensus 164 ------------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva-~eyP---- 226 (376)
.+| ....+.+|.+.++-+|+..|++|.++ +-.+++.+|-.+||..||-|.++|+|+. ++|.
T Consensus 173 ~~~~~~~V~~f~~~G-~~~~m~~~dds~~~FAhssf~~Al~k-k~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kfe 250 (422)
T KOG1526|consen 173 TQKVTLKVYDFKGSG-VAAMMYNTDDSIRGFAHSSFQYALQK-KWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKFE 250 (422)
T ss_pred CcceeEEEEecCCCc-eeEEEeeccchhhHHHHHHHHHHHHh-cCceeeeccchHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 012 23457788888999999999999996 6799999999999999999999999995 5664
Q ss_pred --CeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccC-CCCcccccc---
Q psy559 227 --EIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPG-TRNTGTAIA--- 300 (376)
Q Consensus 227 --~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~-~HGsApdia--- 300 (376)
+|++||++||.|.+|++++-..| |+.|.|..||+-||+.||-.|||||+.|.-+.++.--||.. +|||.....
T Consensus 251 ~~~IwYEHRLIDDmVAqa~KS~GGf-vwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~h 329 (422)
T KOG1526|consen 251 ALGIWYEHRLIDDMVAQAMKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMH 329 (422)
T ss_pred hhcchhhhhhHHHHHHHHHhcCCce-EEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccccchhHHHHHH
Confidence 79999999999999999999999 99999999999999999999999999999999987777654 899999865
Q ss_pred --CC-CccchhHHHHHHHHHHHHcC-------cHHHHHHHHHHHHHHHHcCCCCCCCC----CCC------CCHHHHHHH
Q psy559 301 --GK-NIANPIAMLNASVDMLEHLG-------HMKHASIIKLAIEKTINEDKIHTPDL----GGT------ATSIDVVQN 360 (376)
Q Consensus 301 --Gk-~iANP~a~IlS~amML~~lg-------~~~~A~~I~~AV~~~l~~~~~~T~Dl----gG~------~sT~e~~da 360 (376)
|+ ...||||.|+||..-|.|-| +...|+.+|+|.-.++++| ..|.|| +|. .+|+||.|+
T Consensus 330 qkG~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G-~MTKDLal~i~g~~~r~~y~~T~eFida 408 (422)
T KOG1526|consen 330 QKGQETSTNSIASIFAWTRGLAHRAKLDNNEALAKFANALEKACIETVESG-KMTKDLALCIHGKVERSDYLNTEEFIDA 408 (422)
T ss_pred hcCCCccCcchHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhc-cchHhHHHHhcCCccccccccHHHHHHH
Confidence 54 78999999999999999943 4588999999999999885 899999 443 479999999
Q ss_pred HHHHHhhcc
Q psy559 361 IIKLVQTND 369 (376)
Q Consensus 361 V~~~l~~~~ 369 (376)
|..+|++.-
T Consensus 409 v~~~L~~~~ 417 (422)
T KOG1526|consen 409 VASNLKKKL 417 (422)
T ss_pred HHHHHHHHH
Confidence 999997653
No 32
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=97.13 E-value=0.0096 Score=63.11 Aligned_cols=188 Identities=19% Similarity=0.172 Sum_probs=110.4
Q ss_pred cccccCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhC--CCeeeeeee-HH
Q psy559 160 EHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY--PEIEHNDMI-ID 236 (376)
Q Consensus 160 e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~ey--P~I~~e~~~-vD 236 (376)
+|.+..|-.+..+-.-..-++-.++.|.+.||..|-.-|.-.|+.-. -|.-..+-+++.-++| .++++.-+- +|
T Consensus 443 eh~Ve~GDIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~RA---HDa~lI~kV~~yL~~hdt~gldi~Im~P~~ 519 (735)
T PF03971_consen 443 EHEVEAGDIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDENRA---HDAELIKKVEKYLKDHDTSGLDIRIMSPVE 519 (735)
T ss_dssp EEEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTSH---HHHHHHHHHHHHHTTS--TT--EEEE-HHH
T ss_pred EeeecCCcchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCCCc---cHHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 34444555666666667788999999999999987666666665432 2433333333333444 245555555 46
Q ss_pred HHHHHHHhCCCCcc-EEecCCcchhhHhhhhhhh-cC-CcccccccccCCCceeeccCCCCccccccC------CCccch
Q psy559 237 NTCMQLVSNPKQFD-VMVMPNLYGAITSNVICGL-IG-GAGLISGKNYGDHYAVFEPGTRNTGTAIAG------KNIANP 307 (376)
Q Consensus 237 ~~~~~Lv~~P~~fd-ViV~~NlfGDILSDlaa~l-~G-glGl~psanig~~~a~FEp~~HGsApdiaG------k~iANP 307 (376)
++-..|-+=-..-| +-||.|..=|.|+||.--| .| |.=|+.-.=+=.+.++||+++.||||..+- .=.=+-
T Consensus 520 A~~~sler~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~GGGLFETGAGGSAPKHVqQf~eEnhLRWDS 599 (735)
T PF03971_consen 520 ATRFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFVEENHLRWDS 599 (735)
T ss_dssp HHHHHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTTS-EEEES-SS---HHHHHHHCCCS-----T
T ss_pred HHHHHHHHHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhcccCCceeccCCCCCccHHHHHHHHcCcccccc
Confidence 66666644444555 7799999999999999876 33 222221111223468999999999999873 335567
Q ss_pred hHHHHHHHHHHHHcCcH-------HHHHHHHHHHHHHHHcCCCCCCCCCC
Q psy559 308 IAMLNASVDMLEHLGHM-------KHASIIKLAIEKTINEDKIHTPDLGG 350 (376)
Q Consensus 308 ~a~IlS~amML~~lg~~-------~~A~~I~~AV~~~l~~~~~~T~DlgG 350 (376)
+|-+|+.+-=|+||+.. -.|+.+.+|+.+.|++++.-.+-.|.
T Consensus 600 LGEFlALa~Sle~l~~~~~n~ka~vLa~tLd~At~~~L~n~ksPsRkvge 649 (735)
T PF03971_consen 600 LGEFLALAVSLEHLAQKTGNPKAKVLADTLDAATGKFLENNKSPSRKVGE 649 (735)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHTT-S--SSTTS
T ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 99999999999998642 45889999999999988766665553
No 33
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=96.84 E-value=0.02 Score=60.84 Aligned_cols=183 Identities=17% Similarity=0.180 Sum_probs=118.7
Q ss_pred ccccCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCC--Ceeeeeee-HHH
Q psy559 161 HESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYP--EIEHNDMI-IDN 237 (376)
Q Consensus 161 ~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP--~I~~e~~~-vD~ 237 (376)
|.+..|-.+..+---..-++-.++.|.+.||..|-.-|.-.|+.-. + |.-..+-++..-+++- ++++.-|- +++
T Consensus 448 h~Ve~GDIwRmcq~KD~pI~DWVkLAV~Rar~sg~pavFWLD~~Ra--H-Da~lI~kV~~yL~~hdt~gldi~Im~p~~A 524 (741)
T TIGR00178 448 QSVEAGDIWRMCQVKDAPIQDWVKLAVTRARATGTPAVFWLDPARA--H-DAQLIKKVETYLKDHDTEGLDIQILSPVEA 524 (741)
T ss_pred eeccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEEeCCCch--h-HHHHHHHHHHHHHhcCCCCCceEeeCHHHH
Confidence 3333343333333344568889999999999987666666665321 1 2222222222233442 44555554 455
Q ss_pred HHHHHHhCCCCcc-EEecCCcchhhHhhhhhhh-cCC----cccccccccCCCceeeccCCCCcccccc------CCCcc
Q psy559 238 TCMQLVSNPKQFD-VMVMPNLYGAITSNVICGL-IGG----AGLISGKNYGDHYAVFEPGTRNTGTAIA------GKNIA 305 (376)
Q Consensus 238 ~~~~Lv~~P~~fd-ViV~~NlfGDILSDlaa~l-~Gg----lGl~psanig~~~a~FEp~~HGsApdia------Gk~iA 305 (376)
+-..|=+=-..-| +-||.|..=|.|+||.--| .|. |-+.|=- .+.++||+++.||||..+ |.=.=
T Consensus 525 ~~~slerir~G~dTISVTGNVLRDYLTDLFPILElGTSAKMLSIVPLm---~GGGLFETGAGGSAPKHVqQf~eEnhLRW 601 (741)
T TIGR00178 525 TRFSLARIRRGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLM---AGGGLFETGAGGSAPKHVQQFLEENHLRW 601 (741)
T ss_pred HHHHHHHHHcCCCeEEEechhHHhhhcchhhhhhhccchhhhhhhhcc---cCCceecCCCCCCccHHHHHHHHcCcccc
Confidence 5555544444555 7799999999999998776 332 1122222 245899999999999987 33455
Q ss_pred chhHHHHHHHHHHHHcCcH-------HHHHHHHHHHHHHHHcCCCCCCCCC
Q psy559 306 NPIAMLNASVDMLEHLGHM-------KHASIIKLAIEKTINEDKIHTPDLG 349 (376)
Q Consensus 306 NP~a~IlS~amML~~lg~~-------~~A~~I~~AV~~~l~~~~~~T~Dlg 349 (376)
+-+|-+|+.+-=|+||+.. -.|+.+.+|+.+.|++++.-.+-.|
T Consensus 602 DSLGEFlALa~Sle~la~~~~n~ka~vLa~tLd~At~k~L~n~ksPsRkvg 652 (741)
T TIGR00178 602 DSLGEFLALAASLEHLGNATGNPKALVLADTLDAATGKLLDNNKSPSRKVG 652 (741)
T ss_pred cchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccC
Confidence 6789999999999998752 3388899999999988876555554
No 34
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=96.39 E-value=0.062 Score=56.18 Aligned_cols=202 Identities=17% Similarity=0.151 Sum_probs=122.4
Q ss_pred EEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhC--CCeeeeeee-HHHHHHHHHhC
Q psy559 169 ESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY--PEIEHNDMI-IDNTCMQLVSN 245 (376)
Q Consensus 169 ~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~ey--P~I~~e~~~-vD~~~~~Lv~~ 245 (376)
+..+......++-.++.|.+.||..+---|.-.|-.- -.|.-...-++..-+++ .+..+.-+- +.++-..|-+=
T Consensus 458 wR~cq~kdapi~dWVkLaV~RarlS~~pavFWLDp~R---ahd~~li~kV~~yLkdhdt~GldI~Ilsp~ea~~~sl~rl 534 (744)
T COG2838 458 WRMCQVKDAPIRDWVKLAVTRARLSGMPAVFWLDPYR---AHDKELIKKVEAYLKDHDTNGLDIQILSPVEAMRYSLERL 534 (744)
T ss_pred HHHHhcccchHHHHHHHHHHHHhhcCCceEEEeCcCc---cchHHHHHHHHHHhhhcCCCCcceEEecHHHHHHHHHHHH
Confidence 3345556677888999999999987644444444322 12333333333222332 123333332 45555555554
Q ss_pred CCCcc-EEecCCcchhhHhhhhhhhc-CC-cccccccccCCCceeeccCCCCccccccCC----C--ccchhHHHHHHHH
Q psy559 246 PKQFD-VMVMPNLYGAITSNVICGLI-GG-AGLISGKNYGDHYAVFEPGTRNTGTAIAGK----N--IANPIAMLNASVD 316 (376)
Q Consensus 246 P~~fd-ViV~~NlfGDILSDlaa~l~-Gg-lGl~psanig~~~a~FEp~~HGsApdiaGk----~--iANP~a~IlS~am 316 (376)
-..-| +-||.|..-|.|+|+.--+- |. .-|..-.-+=.+.+|||+++.||||...-| | .=+-+|-+|+.+.
T Consensus 535 ~~G~DtIsvTGNvLRDYlTDLFPIlELGTSAKMLSiVPlmaGGgmfETGAGGSAPKhVqQ~~eENhLRWDSLGEFLALa~ 614 (744)
T COG2838 535 RRGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQLVEENHLRWDSLGEFLALAA 614 (744)
T ss_pred HcCCceeEecchHHHHHHhhhhhHhhcccccchheeeeeccCCceeecCCCCCCcHHHHHHHHhcccchhhHHHHHHHHH
Confidence 45556 66999999999999987762 21 111111111124689999999999997732 2 3467899999999
Q ss_pred HHHHcCcH-------HHHHHHHHHHHHHHHcCCCCCCCCC---CCCC----HHHHHHHHHHHHhhcccccc
Q psy559 317 MLEHLGHM-------KHASIIKLAIEKTINEDKIHTPDLG---GTAT----SIDVVQNIIKLVQTNDLRHH 373 (376)
Q Consensus 317 ML~~lg~~-------~~A~~I~~AV~~~l~~~~~~T~Dlg---G~~s----T~e~~daV~~~l~~~~~~~~ 373 (376)
-|+|+|.. -.|+.+..|..+.|++.|.-.+..| ...| +--+++++.++-...+|..|
T Consensus 615 sle~~~~k~gn~kAkvLa~~LD~AtgklLdn~KsPsRkvgelDNRgShFyLa~ywAq~LAaQ~~D~~L~~~ 685 (744)
T COG2838 615 SLEHLGNKTGNAKAKVLAKALDAATGKLLDNNKSPSRKVGELDNRGSHFYLAMYWAQELAAQTEDAELAAH 685 (744)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHhcCCCcccccccccCCcchhhHHHHHHHHHHhcCccHHHHHH
Confidence 99998743 4478888888888987765544443 2222 44555555555444455444
No 35
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=94.41 E-value=0.048 Score=54.66 Aligned_cols=134 Identities=18% Similarity=0.163 Sum_probs=77.8
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCC--CcEEE-EecCCccccchHHH-HHHHHHH-------HhhCCCeee-eeeeHHHHH
Q psy559 172 KIITAANSYRLSKYAFEYAKKFGR--KKVTT-VHKANIMKISDGLF-LEISRKV-------AKEYPEIEH-NDMIIDNTC 239 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~r~r--k~Vt~-v~KaNvl~~sdglf-~~~~~ev-------a~eyP~I~~-e~~~vD~~~ 239 (376)
+.+|.+.+.+.++...+.-++.|. -|+-+ .=..+.-. .|+| +|..+.+ .++ ++++ -..--|++-
T Consensus 176 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAi~~~~~~--G~~v~GP~paDt~F 251 (326)
T PRK03371 176 DTLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGE--NGLFGDEEIRIVTPAIEAMRAK--GMDVYGPCPPDTVF 251 (326)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCcccCCCCchhhc
Confidence 468888888888887776654332 12322 11222221 3566 3333322 222 2332 233345554
Q ss_pred HHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCC--ceeeccCCCCccccccCCCccchhHHHHHHHHH
Q psy559 240 MQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH--YAVFEPGTRNTGTAIAGKNIANPIAMLNASVDM 317 (376)
Q Consensus 240 ~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~~HGsApdiaGk~iANP~a~IlS~amM 317 (376)
.+-.+ .+||++|+ || -|.+--=.-.+++--+.|+--+ .---.| -||||-||||||+|||.+|+-|.-+-
T Consensus 252 ~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~-DHGTAfDIAGkG~A~~~S~~~Ai~lA 322 (326)
T PRK03371 252 LQAYE--GQYDMVVA--MY----HDQGHIPLKLLGFYDGVNITAGLPFIRTSA-DHGTAFDIAWTGKAKSESMAVSIKLA 322 (326)
T ss_pred ccccc--cCCCEEEE--cc----ccccchhheecccccceEEecCCCeeEecC-CCCchhhhhcCCcCCHHHHHHHHHHH
Confidence 44333 57888877 33 3454444566677677776432 223456 79999999999999999998887664
Q ss_pred H
Q psy559 318 L 318 (376)
Q Consensus 318 L 318 (376)
.
T Consensus 323 ~ 323 (326)
T PRK03371 323 M 323 (326)
T ss_pred H
Confidence 3
No 36
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=94.17 E-value=0.056 Score=54.30 Aligned_cols=135 Identities=15% Similarity=0.114 Sum_probs=80.5
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCC--CcEEE-EecCCccccchHHH-HHHHH-------HHHhhCCCeee-eeeeHHHHH
Q psy559 172 KIITAANSYRLSKYAFEYAKKFGR--KKVTT-VHKANIMKISDGLF-LEISR-------KVAKEYPEIEH-NDMIIDNTC 239 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~r~r--k~Vt~-v~KaNvl~~sdglf-~~~~~-------eva~eyP~I~~-e~~~vD~~~ 239 (376)
+.+|.+.+.+.++.+.+.-+..|. -|+-+ .=-.+.-. .|+| +|.-+ +..+ .++++ -..--|++-
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~--~g~~v~GP~paDt~F 252 (332)
T PRK03743 177 DYVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSGE--HGLFGDEEVDEIIPAVEAAQE--MGINVEGPVPADSVF 252 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHH--CCCcccCCCCchhhc
Confidence 568899999999988887765332 23322 22222221 3455 33222 2222 23332 233356655
Q ss_pred HHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCC--ceeeccCCCCccccccCCCccchhHHHHHHHHH
Q psy559 240 MQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH--YAVFEPGTRNTGTAIAGKNIANPIAMLNASVDM 317 (376)
Q Consensus 240 ~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~~HGsApdiaGk~iANP~a~IlS~amM 317 (376)
.+-.+ .+||++|+ || -|.+---.-.+++--+.|+--+ .---.| -||||-||||||+|||.+|+-|.-+-
T Consensus 253 ~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~-DHGTAfDIAGkg~A~~~S~~~Ai~lA 323 (332)
T PRK03743 253 HLALQ--GRYDAVLS--LY----HDQGHIATKTLDFERTIAITNGLPFLRTSV-DHGTAFDIAGTGKASSVSMEEAILLA 323 (332)
T ss_pred ccccc--cCCCEEEE--cc----cccCChhheecccCCceEEecCCCeeEeCC-CCcchhhhhcCCCCCHHHHHHHHHHH
Confidence 44433 46888887 33 3454444556666677776432 223456 79999999999999999999888775
Q ss_pred HH
Q psy559 318 LE 319 (376)
Q Consensus 318 L~ 319 (376)
.+
T Consensus 324 ~~ 325 (332)
T PRK03743 324 AK 325 (332)
T ss_pred HH
Confidence 44
No 37
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=94.11 E-value=0.058 Score=54.44 Aligned_cols=139 Identities=18% Similarity=0.171 Sum_probs=83.4
Q ss_pred EeecHHHHHHHHHHHHHHHHh-CC--CCcEEEE-ecCCccccchHHH-HH-------HHHHHHhhCCCeeee-eeeHHHH
Q psy559 172 KIITAANSYRLSKYAFEYAKK-FG--RKKVTTV-HKANIMKISDGLF-LE-------ISRKVAKEYPEIEHN-DMIIDNT 238 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~-r~--rk~Vt~v-~KaNvl~~sdglf-~~-------~~~eva~eyP~I~~e-~~~vD~~ 238 (376)
+.+|.+.+.+-++.+.+.-++ .| +-||-+. =..+.-. .|+| +| ..++..++.+++++. ..--|++
T Consensus 179 ~~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAIe~~r~~g~g~~v~GP~paDt~ 256 (345)
T PRK02746 179 KTLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAGE--QGQLGTEEKDWLIPWLESWRQKNPDIQLLGPIPPDTC 256 (345)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCceeeCCCCchhh
Confidence 467888888888887776553 22 2233322 1122211 2444 22 333334443445543 4446777
Q ss_pred HHHHHhC------CCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCC--ceeeccCCCCccccccCCCccchhHH
Q psy559 239 CMQLVSN------PKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH--YAVFEPGTRNTGTAIAGKNIANPIAM 310 (376)
Q Consensus 239 ~~~Lv~~------P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~~HGsApdiaGk~iANP~a~ 310 (376)
-.+-.+. ...||++|+ || -|.+-.=.-.+++--+.|+--+ .---.| -||||-||||||+|||.+|
T Consensus 257 F~~~~~~~~~~~~~~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~-DHGTAfDIAGkg~A~~~S~ 329 (345)
T PRK02746 257 WVSPAQAWYGKGVAEAPDGYLA--LY----HDQGLIPVKLMAFDRAVNTTIGLPFIRTSP-DHGTAFDIAGKGIARPQSM 329 (345)
T ss_pred ccccccccccccccCCCCEEEE--Cc----ccCCChhheeeccCcceEEecCCCeeEeCC-CCcchhhhhcCCCCCHHHH
Confidence 7665542 257999887 33 3455444566677777776432 223446 7999999999999999999
Q ss_pred HHHHHHHHH
Q psy559 311 LNASVDMLE 319 (376)
Q Consensus 311 IlS~amML~ 319 (376)
+-|.-+-.+
T Consensus 330 ~~Ai~lA~~ 338 (345)
T PRK02746 330 KAAIKLAWE 338 (345)
T ss_pred HHHHHHHHH
Confidence 988776443
No 38
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=94.02 E-value=0.063 Score=53.87 Aligned_cols=135 Identities=13% Similarity=0.098 Sum_probs=80.9
Q ss_pred EeecHHHHHHHHHHHHHHHHh-CC--CCcEEEE-ecCCccccchHHH-HHHHHHH-------HhhCCCeee-eeeeHHHH
Q psy559 172 KIITAANSYRLSKYAFEYAKK-FG--RKKVTTV-HKANIMKISDGLF-LEISRKV-------AKEYPEIEH-NDMIIDNT 238 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~-r~--rk~Vt~v-~KaNvl~~sdglf-~~~~~ev-------a~eyP~I~~-e~~~vD~~ 238 (376)
+.+|.+.+.+.++...+.-++ .| +-|+-+. =..+.-. .|+| +|..+.+ .++ ++.+ -..--|++
T Consensus 172 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAi~~~~~~--Gi~v~GP~paDt~ 247 (329)
T PRK01909 172 AALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGE--NGYLGREEIDVIEPALARARAA--GIDARGPYPADTL 247 (329)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCCccCCCCchhh
Confidence 568899999999998887663 23 1233222 1122221 3566 3333222 222 2332 34445666
Q ss_pred HHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCC--ceeeccCCCCccccccCCCccchhHHHHHHHH
Q psy559 239 CMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH--YAVFEPGTRNTGTAIAGKNIANPIAMLNASVD 316 (376)
Q Consensus 239 ~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~~HGsApdiaGk~iANP~a~IlS~am 316 (376)
-.+-.+ ..||++|+ || -|.+---.-.+++--+.|+--+ .---.| -||||-||||||+|||.+|+-|.-+
T Consensus 248 F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTSv-DHGTAfDIAGkg~A~~~S~~~Ai~l 318 (329)
T PRK01909 248 FQPRYL--EDADCVLA--MF----HDQGLPVLKYATFGEGINVTLGLPIIRTSV-DHGTALDLAGTGRADPGSMIAAIDT 318 (329)
T ss_pred cccccc--cCCCEEEE--cc----ccccchhheecccCcceEEecCCCeeEeCC-CCcchhhhhcCCCCCHHHHHHHHHH
Confidence 555444 46888887 33 4555445566677777776432 223456 7999999999999999999988776
Q ss_pred HHH
Q psy559 317 MLE 319 (376)
Q Consensus 317 ML~ 319 (376)
-.+
T Consensus 319 A~~ 321 (329)
T PRK01909 319 AVT 321 (329)
T ss_pred HHH
Confidence 443
No 39
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=93.25 E-value=0.057 Score=53.51 Aligned_cols=133 Identities=25% Similarity=0.258 Sum_probs=71.1
Q ss_pred EeecHHHHHHHHHHHHHHHHh-CCC--CcEEEEecCCccccc--hHHHH-H----HHHHHH-hhCCCeeee-eeeHHHHH
Q psy559 172 KIITAANSYRLSKYAFEYAKK-FGR--KKVTTVHKANIMKIS--DGLFL-E----ISRKVA-KEYPEIEHN-DMIIDNTC 239 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~-r~r--k~Vt~v~KaNvl~~s--dglf~-~----~~~eva-~eyP~I~~e-~~~vD~~~ 239 (376)
+.+|++.+.+.++...+.-++ .|. -|+-+. =-| ++. .|+|= | +...+. .+-.+|.+. ..--|++-
T Consensus 150 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~-gLN--PHaGe~G~~G~EE~~~I~PAI~~~~~~gi~v~GP~paDt~F 226 (298)
T PF04166_consen 150 KLITKERILEKIRLLHKSLKRDFGIENPRIAVA-GLN--PHAGEGGLFGREEIEIIIPAIEEARAEGIDVFGPYPADTVF 226 (298)
T ss_dssp HH--HHHHHHHHHHHHHHHHHTTT-SS-EEEEE--SS--GGGGTTTTTBSHHHHTHHHHHHHHHHTTHEEEEEE-HHHHT
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcCCCCCcEEEE-EeC--CCCCCCCCCcHhHHHHHHHHHHHHHhCCCceECCCccHHhh
Confidence 467888888888887766655 332 233322 222 222 34442 1 222221 112455543 33356665
Q ss_pred HHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCC--CceeeccCCCCccccccCCCccchhHHHHHHHH
Q psy559 240 MQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGD--HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVD 316 (376)
Q Consensus 240 ~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~--~~a~FEp~~HGsApdiaGk~iANP~a~IlS~am 316 (376)
.+- .-.+||++|+ || -|.+-.=.-.+++--+.|+-- ..---.| -||||-||||||+|||.+|+-|.-+
T Consensus 227 ~~~--~~~~fD~vva--MY----HDQGlip~K~l~f~~gVnvTlGLP~iRTS~-DHGTAfDIAGkg~A~~~s~~~Ai~~ 296 (298)
T PF04166_consen 227 GKA--NRGKFDAVVA--MY----HDQGLIPFKLLGFDEGVNVTLGLPIIRTSP-DHGTAFDIAGKGIADPSSMIEAIKL 296 (298)
T ss_dssp SHH--HHTT-SEEEE--SS----HHHHHHHHHHHCTTTSEEEEESSSSEEEEE-SS-S-CCGTTTTTS-THHHHHHHHH
T ss_pred hcc--hhccCCEEEE--ee----cccCccceeecccccceEEecCCCeeeecC-CCCchhhhhCCCCCChHHHHHHHHH
Confidence 443 3468999887 44 455444445555556666532 2223456 7999999999999999999988754
No 40
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=91.55 E-value=0.14 Score=51.45 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=77.7
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCC--CcEEEEecCCccccc--hHHH-HHHHH-------HHHhhCCCeee-eeeeHHHH
Q psy559 172 KIITAANSYRLSKYAFEYAKKFGR--KKVTTVHKANIMKIS--DGLF-LEISR-------KVAKEYPEIEH-NDMIIDNT 238 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~r~r--k~Vt~v~KaNvl~~s--dglf-~~~~~-------eva~eyP~I~~-e~~~vD~~ 238 (376)
+.+|++.+.+.+|..-+.-++.|- -|+-+.- -| ++. .|+| +|.-+ +..++ ++++ -..--|++
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~g-LN--PHAGE~G~~G~EE~~iI~PAI~~~~~~--G~~v~GP~paDt~ 251 (332)
T PRK00232 177 DAITPERLEEVIRILHADLRRKGIAEPRIAVCG-LN--PHAGEGGHFGREEIDIIIPALEELRAE--GINLVGPLPADTL 251 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCcEEEEe-eC--CCCCCCCCCCHHHHHHHHHHHHHHHhC--CCCcCCCCCchhh
Confidence 568889898888888876664331 1332221 12 222 2455 33222 22222 2332 23334555
Q ss_pred HHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCC--ceeeccCCCCccccccCCCccchhHHHHHHHH
Q psy559 239 CMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH--YAVFEPGTRNTGTAIAGKNIANPIAMLNASVD 316 (376)
Q Consensus 239 ~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~~HGsApdiaGk~iANP~a~IlS~am 316 (376)
-.+-.+ .+||++|+ || -|.+--=.-.+++--+.|+--+ .---.| -||||-||||||+|||.+|+-|.-+
T Consensus 252 F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLPiiRTS~-DHGTAfDIAGkg~A~~~S~~~Ai~l 322 (332)
T PRK00232 252 FQPAYL--GDADAVLA--MY----HDQGLPVLKYLGFGRGVNITLGLPFIRTSV-DHGTALDLAGKGIADVGSFITALNL 322 (332)
T ss_pred cccccc--CCCCEEEE--Cc----ccccchhheecccCcceEEecCCCeeEeCC-CCcchhhhhcCCCCCHHHHHHHHHH
Confidence 544433 46888877 33 3444444556666667776432 222456 7999999999999999999988776
Q ss_pred HHH
Q psy559 317 MLE 319 (376)
Q Consensus 317 ML~ 319 (376)
-.+
T Consensus 323 A~~ 325 (332)
T PRK00232 323 AIR 325 (332)
T ss_pred HHH
Confidence 543
No 41
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=91.42 E-value=0.12 Score=51.52 Aligned_cols=62 Identities=23% Similarity=0.228 Sum_probs=42.4
Q ss_pred ccEEecCCcchhhHhhhhhhhcCCcccccccccCCC--ceeeccCCCCccccccCCCccchhHHHHHHHHH
Q psy559 249 FDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH--YAVFEPGTRNTGTAIAGKNIANPIAMLNASVDM 317 (376)
Q Consensus 249 fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~~HGsApdiaGk~iANP~a~IlS~amM 317 (376)
+|.+|+ || -|.+---.--+|+--+.|+.-+ +---.| -||||-||||||+|||.+++-|..+.
T Consensus 259 ~Davla--MY----HDQgliplK~l~Fd~~VNvtlGLPfiRTS~-DHGTAfDiAgkGiA~~~S~~~Ai~lA 322 (332)
T COG1995 259 YDAVLA--MY----HDQGLIPLKYLGFDRGVNVTLGLPFIRTSV-DHGTAFDIAGKGIADPGSLIAAIKLA 322 (332)
T ss_pred CCEEEE--ee----ccccchhhhhhccccceEEecCCCeeeecC-CccchhhhhcCCcCCchHHHHHHHHH
Confidence 466665 33 3444444555666677776432 233456 79999999999999999998887663
No 42
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=90.81 E-value=0.18 Score=50.87 Aligned_cols=135 Identities=17% Similarity=0.194 Sum_probs=78.2
Q ss_pred EeecHHHHHHHHHHHHHHHHh-CCC--CcEEEE-ecCCccccchHHH-HHHH-------HHHHhhCCCeee-eeeeHHHH
Q psy559 172 KIITAANSYRLSKYAFEYAKK-FGR--KKVTTV-HKANIMKISDGLF-LEIS-------RKVAKEYPEIEH-NDMIIDNT 238 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~-r~r--k~Vt~v-~KaNvl~~sdglf-~~~~-------~eva~eyP~I~~-e~~~vD~~ 238 (376)
+.+|.+.+.+.++.+.+.-++ .|. -|+-+. =-.+.-. .|+| +|.. ++..++ ++.+ -..--|++
T Consensus 181 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~--Gi~v~GP~paDt~ 256 (336)
T PRK05312 181 AALTPELIVATARITAADLRRRFGIASPRLAVAGLNPHAGE--GGALGREDIDIIAPAIEQLRAE--GIDARGPLPADTM 256 (336)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCCccCCCCchhh
Confidence 568899999999988887663 332 133322 1122211 3455 3322 222222 2322 23334555
Q ss_pred HHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCC--ceeeccCCCCccccccCCCccchhHHHHHHHH
Q psy559 239 CMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH--YAVFEPGTRNTGTAIAGKNIANPIAMLNASVD 316 (376)
Q Consensus 239 ~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~~HGsApdiaGk~iANP~a~IlS~am 316 (376)
-.+-.. .+||++|+ || -|.+-.-.-.+++--+.|+--+ .---.| -||||-||||||+|||.+|+-|.-+
T Consensus 257 F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTSv-DHGTAfDIAGkg~A~~~S~~~Ai~l 327 (336)
T PRK05312 257 FHAAAR--ATYDAAIC--MY----HDQALIPIKTLDFDGGVNVTLGLPFIRTSP-DHGTAFDIAGKGIARPDSLIAALRL 327 (336)
T ss_pred cccccc--cCCCEEEE--cc----cccCChhheecccCcceEEecCCCeeEeCC-CCcchhhhhcCCCCCHHHHHHHHHH
Confidence 444322 47888776 33 3454444556666667776432 222345 7999999999999999999988776
Q ss_pred HHH
Q psy559 317 MLE 319 (376)
Q Consensus 317 ML~ 319 (376)
-.+
T Consensus 328 A~~ 330 (336)
T PRK05312 328 AAQ 330 (336)
T ss_pred HHH
Confidence 544
No 43
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=90.79 E-value=0.18 Score=50.47 Aligned_cols=134 Identities=17% Similarity=0.185 Sum_probs=76.7
Q ss_pred EeecHHHHHHHHHHHHHHHHh-CC--CCcEEE-EecCCccccchHHH-HHH-------HHHHHhhCCCeee-eeeeHHHH
Q psy559 172 KIITAANSYRLSKYAFEYAKK-FG--RKKVTT-VHKANIMKISDGLF-LEI-------SRKVAKEYPEIEH-NDMIIDNT 238 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~-r~--rk~Vt~-v~KaNvl~~sdglf-~~~-------~~eva~eyP~I~~-e~~~vD~~ 238 (376)
+.+|++.+.+-++.+.+.-++ .| +-|+-+ .=-.+.-. .|+| +|. .++..++ ++.+ -..--|++
T Consensus 169 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~--G~~v~GP~paDt~ 244 (320)
T TIGR00557 169 AALTPELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAGE--GGHLGREEIDIIIPALEALRAE--GIDLIGPLPADTL 244 (320)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCcccCCCCchhh
Confidence 458899999988888887774 23 223322 21222221 2455 222 2222222 2322 23334555
Q ss_pred HHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCC--ceeeccCCCCccccccCCCccchhHHHHHHHH
Q psy559 239 CMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH--YAVFEPGTRNTGTAIAGKNIANPIAMLNASVD 316 (376)
Q Consensus 239 ~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~~HGsApdiaGk~iANP~a~IlS~am 316 (376)
-.+-.+ .+||++|+ || -|.+-.=.-.+++--+.|+--+ .---.| -||||-||||||+|||.+++-|.-+
T Consensus 245 F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLPiiRTS~-DHGTAfDIAGkg~A~~~S~~~Ai~~ 315 (320)
T TIGR00557 245 FHPAAL--AKYDAVLA--MY----HDQGLIPLKYLGFDEGVNVTLGLPFIRTSP-DHGTAFDIAGKGKADPGSLIAAIKL 315 (320)
T ss_pred cccccc--cCCCEEEE--Cc----ccccchhheecccCcceEEecCCCeeEeCC-CCcchhhhhcCCCCCHHHHHHHHHH
Confidence 444322 57888876 33 3454444556666667776432 222446 7999999999999999999887766
Q ss_pred HH
Q psy559 317 ML 318 (376)
Q Consensus 317 ML 318 (376)
..
T Consensus 316 A~ 317 (320)
T TIGR00557 316 AI 317 (320)
T ss_pred HH
Confidence 43
No 44
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=90.62 E-value=0.19 Score=50.01 Aligned_cols=134 Identities=18% Similarity=0.119 Sum_probs=77.0
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHH-HH------HHHHHHhhCCCeeee--eeeHHHHHHHH
Q psy559 172 KIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLF-LE------ISRKVAKEYPEIEHN--DMIIDNTCMQL 242 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf-~~------~~~eva~eyP~I~~e--~~~vD~~~~~L 242 (376)
+.+|.+.+.+-++...+.-+ ..|--|.-.. .+.-. .|+| +| ..++..++ -+++++ ..--|++-.+-
T Consensus 157 ~~it~~~i~~~i~~~~~~l~-~PrIaV~gLN-PHAGE--~G~~G~EE~iI~PAi~~~~~~-~g~~~~~GP~paDt~F~~~ 231 (307)
T PRK03946 157 QLIKVKKLVKFLLDFYKSTK-FKKIGVLGLN-PHAGD--NGVIGGEEEEIKKAIKKANQF-LGFEIFFGPLVPDSAFTPN 231 (307)
T ss_pred HHhCHHHHHHHHHHHHHHhc-CCCEEEEeeC-CCCCC--CCCCCcchHHHHHHHHHHHHh-cCCCcccCCcCchhhcccc
Confidence 46788888877777666433 3222233322 22211 2344 22 22332211 134433 55667766554
Q ss_pred HhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCC--ceeeccCCCCccccccCCC-ccchhHHHHHHHHHHH
Q psy559 243 VSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH--YAVFEPGTRNTGTAIAGKN-IANPIAMLNASVDMLE 319 (376)
Q Consensus 243 v~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~~HGsApdiaGk~-iANP~a~IlS~amML~ 319 (376)
.+ .+||++|+- | -|.+--=.-.+++--+.|+--+ .---.| -||||-|||||| +|||.+|+-|.-+-.+
T Consensus 232 ~~--~~~D~vlaM--Y----HDQGlip~K~l~F~~gVnvTlGLP~iRTSp-DHGTAfDIAGkg~~A~~~S~~~Ai~lA~~ 302 (307)
T PRK03946 232 KR--KKFNYYVAM--Y----HDQGLAPLKALYFDESINVSLNLPILRTSV-DHGTAFDIAYKNAKANTKSYLNAIKYAIN 302 (307)
T ss_pred cc--cCCCEEEEC--c----cccCchhheeeccCcceEEecCCCEeEecC-CCCchhhhcCCCCcCCHHHHHHHHHHHHH
Confidence 33 589988873 3 3444444556666667776432 222446 799999999999 9999999888766443
No 45
>PRK12862 malic enzyme; Reviewed
Probab=67.73 E-value=35 Score=38.30 Aligned_cols=100 Identities=23% Similarity=0.293 Sum_probs=69.0
Q ss_pred EeecHHHHHHHHHHHHHHHHhCC-CCcEEEEecCCcc---ccchHHHHHHHHHHHhhCCCeeee-eeeHHHHHHHHHhC-
Q psy559 172 KIITAANSYRLSKYAFEYAKKFG-RKKVTTVHKANIM---KISDGLFLEISRKVAKEYPEIEHN-DMIIDNTCMQLVSN- 245 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~r~-rk~Vt~v~KaNvl---~~sdglf~~~~~eva~eyP~I~~e-~~~vD~~~~~Lv~~- 245 (376)
.-.|.+...+|++.+-+++++-| .-||-+.--+|.- ..+...-++.++.+.+++|++.++ .+-.|++...=+..
T Consensus 607 ~~pt~e~La~ia~~aa~~ar~~GIePRVAvLshs~~Gs~~~ee~~~i~pAiellr~~~~g~~VdGPl~aDtAf~~~~~~~ 686 (763)
T PRK12862 607 EDPTAEELAEITILAAEEVRRFGIEPKVALLSHSNFGSSDSPSARKMREALEILRERAPDLEVDGEMHGDAALDEELRDR 686 (763)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcccccCCCCCchHHHHHHHHHHHHhcCCCcEEEcCCCHHHHcCHHHHhh
Confidence 45678888999999999999765 3356666222332 223345566777777789998875 45578886553332
Q ss_pred --C-----CCccEEecCCcc-hhhHhhhhhhhcC
Q psy559 246 --P-----KQFDVMVMPNLY-GAITSNVICGLIG 271 (376)
Q Consensus 246 --P-----~~fdViV~~Nlf-GDILSDlaa~l~G 271 (376)
| +.|||+|++|+. |+|.--+..-+.|
T Consensus 687 K~~~s~vaG~aDvLV~P~~DqGNI~~Kll~f~~g 720 (763)
T PRK12862 687 IFPDSRLEGEANLLVFPNLDAANIAYNLLKTAAG 720 (763)
T ss_pred cCCCCccCCCCCEEEecChhHhhHHHHHHHHhcc
Confidence 2 349999999999 9998877766654
No 46
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=62.98 E-value=47 Score=33.05 Aligned_cols=98 Identities=20% Similarity=0.279 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHHHHHhCC--CCcEEEEe---cCCccccchHHHHHHHHHHHhhCCCeeee-eeeHHHHHHH------H
Q psy559 175 TAANSYRLSKYAFEYAKKFG--RKKVTTVH---KANIMKISDGLFLEISRKVAKEYPEIEHN-DMIIDNTCMQ------L 242 (376)
Q Consensus 175 Tr~~~eRiar~AFe~A~~r~--rk~Vt~v~---KaNvl~~sdglf~~~~~eva~eyP~I~~e-~~~vD~~~~~------L 242 (376)
|.+..-.|+..|-++|+.-+ .-||-+.. |.|--..+-..-++.++-+.+++|++.++ ++.+|++.-. .
T Consensus 157 ~~e~l~~ia~~a~~~a~~lg~~~PkVAlLs~S~~gs~~~~~~~kv~eA~~l~~~~~~~~~vdG~l~~D~Al~~~~a~~K~ 236 (303)
T TIGR00651 157 NAEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGSGEDVEKVREATRIAKEKRPDLTIDGELQFDAAFVEKVAEKKA 236 (303)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCCCccHHHHHHHHHHhccCCCeEEEecCchhhhCCHHHHHhhC
Confidence 44555677888888998765 34555543 22322112234556665555678998875 4456776433 1
Q ss_pred HhCC--CCccEEecCCcc-hhhHhhhhhhhcCC
Q psy559 243 VSNP--KQFDVMVMPNLY-GAITSNVICGLIGG 272 (376)
Q Consensus 243 v~~P--~~fdViV~~Nlf-GDILSDlaa~l~Gg 272 (376)
..+| +.-||+|+||++ |+|+--+.-.+.|+
T Consensus 237 ~~s~v~G~AdvLV~Pnl~aGNi~~K~~~~~~~~ 269 (303)
T TIGR00651 237 PNSPVAGSANVFVFPDLDAGNIGYKIVQRLGDA 269 (303)
T ss_pred CCCccCCcCCEEEeCCchHHHHHHHHHHHhcCC
Confidence 2222 467899999999 99987777666554
No 47
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=54.94 E-value=86 Score=35.25 Aligned_cols=99 Identities=24% Similarity=0.274 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHHHHHhCC-CCcEEEE---ecCCccccchHHHHHHHHHHHhhCCCeeee-eeeHHHHHHHH------H
Q psy559 175 TAANSYRLSKYAFEYAKKFG-RKKVTTV---HKANIMKISDGLFLEISRKVAKEYPEIEHN-DMIIDNTCMQL------V 243 (376)
Q Consensus 175 Tr~~~eRiar~AFe~A~~r~-rk~Vt~v---~KaNvl~~sdglf~~~~~eva~eyP~I~~e-~~~vD~~~~~L------v 243 (376)
|.+..-.|+..|-++|+.-| .-||-+. ++.|.-..+...-++..+-+.+++|++.++ ++.+|++.-.- .
T Consensus 602 taeqLa~IA~~aa~~ar~lGiePRVALLS~Sn~Gse~~k~~~~vreA~~llk~~~~~l~~dGemq~D~Al~~~va~~K~p 681 (752)
T PRK07232 602 TAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELLRERAPDLEVDGEMHGDAALNEEIRKDLYP 681 (752)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeccccCCCCCCcHHHHHHHHHHHHhhCCCcEEEEechHHHhCCHHHHHhhCC
Confidence 45566677888888898765 2467777 665543223345666666666778998875 45577764322 2
Q ss_pred hCC--CCccEEecCCcc-hhhHhhhhhhhcCCc
Q psy559 244 SNP--KQFDVMVMPNLY-GAITSNVICGLIGGA 273 (376)
Q Consensus 244 ~~P--~~fdViV~~Nlf-GDILSDlaa~l~Ggl 273 (376)
.+| +.-||+|.||+- |+|+--+.--+.|+.
T Consensus 682 ~s~vaG~ANVLIfPdLeaGNI~yKllq~l~g~~ 714 (752)
T PRK07232 682 FSRLKGPANVLVMPNLEAANISYNLLKELGGGV 714 (752)
T ss_pred CCccCCcCCEEEeCCchhhHHHHHHHHHhcCCe
Confidence 223 356899999998 999999888776664
No 48
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=50.66 E-value=53 Score=30.03 Aligned_cols=68 Identities=21% Similarity=0.178 Sum_probs=40.3
Q ss_pred HHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcc
Q psy559 186 AFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLY 258 (376)
Q Consensus 186 AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~Nlf 258 (376)
++| |..||-++|++|+|..-. -...++-.+.+..+- .+.+-..-+-....++......||+|.+.==|
T Consensus 57 GlE-ALSRGA~~v~fVE~~~~a---~~~i~~N~~~l~~~~-~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY 124 (183)
T PF03602_consen 57 GLE-ALSRGAKSVVFVEKNRKA---IKIIKKNLEKLGLED-KIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPY 124 (183)
T ss_dssp HHH-HHHTT-SEEEEEES-HHH---HHHHHHHHHHHT-GG-GEEEEESSHHHHHHHHHHCTS-EEEEEE--ST
T ss_pred HHH-HHhcCCCeEEEEECCHHH---HHHHHHHHHHhCCCc-ceeeeccCHHHHHHhhcccCCCceEEEECCCc
Confidence 566 677889999999987543 346666666653221 34444444445566777789999988775444
No 49
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=50.02 E-value=39 Score=26.96 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHH-hh--CCCeeeeeeeHHHHHHHHHhCCCCccEEecCC
Q psy559 184 KYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVA-KE--YPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 184 r~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva-~e--yP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~N 256 (376)
+.++.+|+++...+|+.++.. .-+.+.+++-. +. -+.|.+.+. |. ......+++||+|++.+
T Consensus 14 ~~~~~l~~~~~~~~v~gvD~s-------~~~~~~a~~~~~~~~~~~~i~~~~~--d~--~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 14 RLSIALARLFPGARVVGVDIS-------PEMLEIARERAAEEGLSDRITFVQG--DA--EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp HHHHHHHHHHTTSEEEEEESS-------HHHHHHHHHHHHHTTTTTTEEEEES--CC--HGGTTTSSCEEEEEECS
T ss_pred HHHHHHHhcCCCCEEEEEeCC-------HHHHHHHHHHHHhcCCCCCeEEEEC--cc--ccCcccCCCCCEEEECC
Confidence 356677775556789999842 33444444443 22 245555443 33 55667788899999999
No 50
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=49.87 E-value=1e+02 Score=30.74 Aligned_cols=98 Identities=22% Similarity=0.259 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHHHHHHHhCCC-CcEEEE---ecCC-ccccchHHHHHHHHHHHhhCCCeeee-eeeHHHHHHH------H
Q psy559 175 TAANSYRLSKYAFEYAKKFGR-KKVTTV---HKAN-IMKISDGLFLEISRKVAKEYPEIEHN-DMIIDNTCMQ------L 242 (376)
Q Consensus 175 Tr~~~eRiar~AFe~A~~r~r-k~Vt~v---~KaN-vl~~sdglf~~~~~eva~eyP~I~~e-~~~vD~~~~~------L 242 (376)
|.+....|++.|-++|+.-|. -||-+. +|.+ -++ +...-++.++-+.+++|+..+| ++..|++.-. .
T Consensus 173 ~~e~l~~ia~~a~~~ar~lG~~PkVAlLs~s~~Gs~~~~-~~~~~~ea~~ll~~~~~~~~vdGel~~D~A~~~~~~~~k~ 251 (324)
T PRK09653 173 TAEQLAEIAINSAETAKAFGIDPKVAMLSFSTKGSAKGP-EVDKVQEATEIAKELAPDLKIDGELQFDAAFVPEVAAKKA 251 (324)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCC-cHHHHHHHHHHHHhhCCCCeEEecchHHHhCCHHHHHhhC
Confidence 455666778888899987653 244444 2233 223 3345666666666779998885 4557877422 1
Q ss_pred HhCC--CCccEEecCCcc-hhhHhhhhhhhcCCc
Q psy559 243 VSNP--KQFDVMVMPNLY-GAITSNVICGLIGGA 273 (376)
Q Consensus 243 v~~P--~~fdViV~~Nlf-GDILSDlaa~l~Ggl 273 (376)
..+| ++-||+|.||+- |+|+--+.--+.|+.
T Consensus 252 ~~s~v~G~AnvLi~P~l~agNi~yK~l~~~~~~~ 285 (324)
T PRK09653 252 PGSPVAGKANVFVFPSLEAGNIGYKIAQRLGGFE 285 (324)
T ss_pred CCCccCCcCCEEEcCChHHhHHHHHHHHHhcCCe
Confidence 2222 356899999999 999888877666543
No 51
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=49.59 E-value=1.4e+02 Score=30.14 Aligned_cols=75 Identities=21% Similarity=0.312 Sum_probs=40.3
Q ss_pred HHHHHHhCCCCcEEEEecC-----CccccchHHHHH------------HHHHHHhhCCCeeeeeeeHHH---HHHHHHhC
Q psy559 186 AFEYAKKFGRKKVTTVHKA-----NIMKISDGLFLE------------ISRKVAKEYPEIEHNDMIIDN---TCMQLVSN 245 (376)
Q Consensus 186 AFe~A~~r~rk~Vt~v~Ka-----Nvl~~sdglf~~------------~~~eva~eyP~I~~e~~~vD~---~~~~Lv~~ 245 (376)
|-.+|+. |-+++|++|.- |+-+. -||.+ ..+++.+-+|+++++....|. -...++
T Consensus 40 a~~La~a-Gvg~i~lvD~D~ve~sNL~RQ--~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~-- 114 (338)
T PRK12475 40 AEALVRA-GIGKLTIADRDYVEWSNLQRQ--QLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELV-- 114 (338)
T ss_pred HHHHHHc-CCCEEEEEcCCcccccccCcc--ccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh--
Confidence 3444544 67899999874 44442 13322 124445668999887765432 223443
Q ss_pred CCCccEEecC--Ccchhh-Hhhhh
Q psy559 246 PKQFDVMVMP--NLYGAI-TSNVI 266 (376)
Q Consensus 246 P~~fdViV~~--NlfGDI-LSDla 266 (376)
..||+||.. |.--.+ ++|++
T Consensus 115 -~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 115 -KEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred -cCCCEEEEcCCCHHHHHHHHHHH
Confidence 468965543 333322 45555
No 52
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=46.31 E-value=21 Score=37.14 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=20.0
Q ss_pred CccEEEEccCCcceeecccccccC
Q psy559 142 GIDIVIVRQNTEGEYAMLEHESVD 165 (376)
Q Consensus 142 ~iDivivREnteG~Y~g~e~~~~~ 165 (376)
..+++++||||||.|.+.+.....
T Consensus 127 ~~~i~i~Ren~e~~y~~id~vi~r 150 (413)
T PTZ00435 127 KKPIVIGRHAFGDQYKATDFVVDG 150 (413)
T ss_pred CCCeeeeccccCCCcCceEEEEec
Confidence 478999999999999998865543
No 53
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=45.75 E-value=1.5e+02 Score=27.25 Aligned_cols=77 Identities=10% Similarity=0.105 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeee-----eHH---HHHHHHHhCCCC
Q psy559 177 ANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDM-----IID---NTCMQLVSNPKQ 248 (376)
Q Consensus 177 ~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~-----~vD---~~~~~Lv~~P~~ 248 (376)
...+..+++..+.. +|.++|-++.=.+-. .+.....+-+++..+++|++++... ..+ ..+.++++....
T Consensus 106 ~~g~~~~~~l~~~~--~g~~~i~~l~~~~~~-~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (270)
T cd06308 106 EIGRQAGEYIANLL--PGKGNILEIWGLEGS-SPAIERHDGFKEALSKYPKIKIVAQQDGDWLKEKAEEKMEELLQANPD 182 (270)
T ss_pred HHHHHHHHHHHHHc--CCCceEEEEECCCCC-chHHHHHHHHHHHHHHCCCCEEEEecCCCccHHHHHHHHHHHHHhCCC
Confidence 33444444443322 366788777411111 1223445566666677887754321 112 245566655457
Q ss_pred ccEEecCC
Q psy559 249 FDVMVMPN 256 (376)
Q Consensus 249 fdViV~~N 256 (376)
+|.|++.|
T Consensus 183 ~~aI~~~~ 190 (270)
T cd06308 183 IDLVYAHN 190 (270)
T ss_pred CcEEEeCC
Confidence 89888865
No 54
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=42.06 E-value=2e+02 Score=26.14 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeee-----eeHH---HHHHHHHhCCC
Q psy559 176 AANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHND-----MIID---NTCMQLVSNPK 247 (376)
Q Consensus 176 r~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~-----~~vD---~~~~~Lv~~P~ 247 (376)
....+.++++..+.. .|++++.++.=..-.. +...+.+-+++..++|+++++.. ...+ ..+.++.+.+.
T Consensus 104 ~~~~~~~~~~l~~~~--~g~~~i~~l~~~~~~~-~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 180 (268)
T cd06323 104 VAGGKMAAEYLVKLL--GGKGKVVELQGIPGAS-AARERGKGFHEVVDKYPGLKVVASQPADFDRAKGLNVMENILQAHP 180 (268)
T ss_pred HHHHHHHHHHHHHHh--CCCceEEEEeCCCCCc-cHHHHHHHHHHHHHhCCCcEEEecccCCCCHHHHHHHHHHHHHHCC
Confidence 344455555554432 1567777774222122 23345566666656676665431 1122 23456666666
Q ss_pred CccEEecCCc
Q psy559 248 QFDVMVMPNL 257 (376)
Q Consensus 248 ~fdViV~~Nl 257 (376)
.+|.+++.|-
T Consensus 181 ~~~ai~~~~d 190 (268)
T cd06323 181 DIKGVFAQND 190 (268)
T ss_pred CcCEEEEcCC
Confidence 7898888763
No 55
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.77 E-value=2.3e+02 Score=25.82 Aligned_cols=63 Identities=11% Similarity=0.111 Sum_probs=35.7
Q ss_pred CCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeee----HHH---HHHHHHhCCCCccEEecCCcc
Q psy559 194 GRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMI----IDN---TCMQLVSNPKQFDVMVMPNLY 258 (376)
Q Consensus 194 ~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~----vD~---~~~~Lv~~P~~fdViV~~Nlf 258 (376)
|.+++.++.-. -.. +.....+-+++..+++|++++.... .+. .+..+++....+++|++.|--
T Consensus 120 g~~~i~~i~~~-~~~-~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 189 (267)
T cd06322 120 GKGQVAIIDYP-TVQ-SVVDRVRGFKEALADYPNIKIVAVQPGITRAEALTAAQNILQANPDLDGIFAFGDD 189 (267)
T ss_pred CCceEEEEecC-CCc-cHHHHHHHHHHHHHhCCCcEEEEecCCCChHHHHHHHHHHHHhCCCCCEEEEcCCc
Confidence 56788887632 222 2334556666666677777643211 122 234556554478999988743
No 56
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=41.10 E-value=1e+02 Score=33.51 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=71.6
Q ss_pred eEEEeEeecHHHHHH-HHHHHHHHHHhC--CCC--------cEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeee-
Q psy559 167 VVESMKIITAANSYR-LSKYAFEYAKKF--GRK--------KVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMI- 234 (376)
Q Consensus 167 va~~~~~~Tr~~~eR-iar~AFe~A~~r--~rk--------~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~- 234 (376)
++..+-..+-.|.|| +.|.|.+.|+.. ++| +|+++-.+=--+....+|.+.+++ .+-|..+++.+-
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 241 (578)
T PRK15490 164 LALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLE--EQVEVLEIAKITG 241 (578)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHh--cCCceEEeeccch
Confidence 677777788888865 889999999763 333 788887766666666799988887 333333332221
Q ss_pred ------------------------HHHHH--HHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcc
Q psy559 235 ------------------------IDNTC--MQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAG 274 (376)
Q Consensus 235 ------------------------vD~~~--~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglG 274 (376)
+++.. +.|+ .-.++|||-+.|....++.-++|-++|-.-
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i-r~~rpDIVHt~~~~a~l~g~laA~lagvpv 306 (578)
T PRK15490 242 NLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHL-CERKLDYLSVWQDGACLMIALAALIAGVPR 306 (578)
T ss_pred hhhhhccccchHHHHHHhcCChHHHHHHHHHHHHH-HHcCCCEEEEcCcccHHHHHHHHHhcCCCE
Confidence 22222 1222 447889999999888899989888887544
No 57
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=38.71 E-value=72 Score=26.06 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=37.8
Q ss_pred CeeeEEEEcCCCCCHHHHH-HHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHHhcCeEEEccc
Q psy559 42 GRNAVTMLPGGGIGPELMS-YVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNI 108 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~-aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~~dail~G~i 108 (376)
+.++|.++=|.|++..++. ...++++.-|++++++...++. .-+...++|++|.+|-
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~----------~~~~~~~~Dvill~pq 59 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGA----------AGEKLDDADVVLLAPQ 59 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHH----------HHhhcCCCCEEEECch
Confidence 4578999999999988543 3344444457787776655433 2223456899998883
No 58
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=38.54 E-value=2.3e+02 Score=26.08 Aligned_cols=73 Identities=14% Similarity=0.028 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhC--CCCcEEEEe-cCCccccchHHHHHHHHHHHhhCCCeeeeee-----eH---HHHHHHHHhCCCCcc
Q psy559 182 LSKYAFEYAKKF--GRKKVTTVH-KANIMKISDGLFLEISRKVAKEYPEIEHNDM-----II---DNTCMQLVSNPKQFD 250 (376)
Q Consensus 182 iar~AFe~A~~r--~rk~Vt~v~-KaNvl~~sdglf~~~~~eva~eyP~I~~e~~-----~v---D~~~~~Lv~~P~~fd 250 (376)
..+.+.++..+. |++++.++. ..+.. +.....+-+++..+++|++++... .. -....++++++.++|
T Consensus 107 ~g~~~~~~l~~~~~g~~~i~~l~~~~~~~--~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (275)
T cd06320 107 NGVRGAEWIIDKLAEGGKVAIIEGKAGAF--AAEQRTEGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLK 184 (275)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCCCCCc--cHHHHHHHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCcc
Confidence 334444444433 667777663 23322 112333556666566677654221 11 124446776666799
Q ss_pred EEecCC
Q psy559 251 VMVMPN 256 (376)
Q Consensus 251 ViV~~N 256 (376)
.|++.|
T Consensus 185 ai~~~~ 190 (275)
T cd06320 185 AIYCNN 190 (275)
T ss_pred EEEECC
Confidence 998886
No 59
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=38.20 E-value=42 Score=27.77 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhC
Q psy559 176 AANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY 225 (376)
Q Consensus 176 r~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~ey 225 (376)
....|||.|.|.+-=.-. |..+|.-|+.+|++++++|
T Consensus 23 ~keaERigr~AlKaGL~e-------------ieI~d~eL~~~FeeIa~RF 59 (92)
T PF07820_consen 23 TKEAERIGRIALKAGLGE-------------IEISDAELQAAFEEIAARF 59 (92)
T ss_pred HHHHHHHHHHHHHccccc-------------ccCCHHHHHHHHHHHHHHH
Confidence 567899999886533221 5568999999999999887
No 60
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=37.59 E-value=2e+02 Score=22.49 Aligned_cols=80 Identities=10% Similarity=0.199 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEecCCccc--------cchHHHHHHHHHHHhh--CCCeeeeeeeHHH-HHHHHH-
Q psy559 176 AANSYRLSKYAFEYAKKFGRKKVTTVHKANIMK--------ISDGLFLEISRKVAKE--YPEIEHNDMIIDN-TCMQLV- 243 (376)
Q Consensus 176 r~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~--------~sdglf~~~~~eva~e--yP~I~~e~~~vD~-~~~~Lv- 243 (376)
.....+++++|.++|..+ ..++|++|=..-.. ....-.++..++..+. ++++.+...+++. ....++
T Consensus 9 ~~~~~~~l~~a~~~a~~~-~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (130)
T cd00293 9 SEESERALRWAARLARRL-GAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILE 87 (130)
T ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHH
Confidence 456788999999999997 57888776321111 0112334444454433 4677766655422 122332
Q ss_pred -hCCCCccEEecCC
Q psy559 244 -SNPKQFDVMVMPN 256 (376)
Q Consensus 244 -~~P~~fdViV~~N 256 (376)
.+-..+|++|...
T Consensus 88 ~~~~~~~dlvvig~ 101 (130)
T cd00293 88 AAEELGADLIVMGS 101 (130)
T ss_pred HHHHcCCCEEEEcC
Confidence 2456678777754
No 61
>KOG1671|consensus
Probab=36.80 E-value=20 Score=33.71 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=30.3
Q ss_pred hhcCCcccccccccCCCceeeccCCCCccccccCCCc
Q psy559 268 GLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNI 304 (376)
Q Consensus 268 ~l~GglGl~psanig~~~a~FEp~~HGsApdiaGk~i 304 (376)
+++=-||..|-+|-|+..+.|-| +|||--|+-|+-.
T Consensus 151 gVCThLGCVp~~~AGd~gg~~CP-CHGSHYdasGRIr 186 (210)
T KOG1671|consen 151 GVCTHLGCVPIANAGDYGGYYCP-CHGSHYDASGRIR 186 (210)
T ss_pred eeeccccccccccccccCceecc-cccccccccCcee
Confidence 34446789999999999999999 9999999988633
No 62
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=36.69 E-value=1.6e+02 Score=27.75 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeee-------eeHH---HHHHHHHhCCCCccE
Q psy559 182 LSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHND-------MIID---NTCMQLVSNPKQFDV 251 (376)
Q Consensus 182 iar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~-------~~vD---~~~~~Lv~~P~~fdV 251 (376)
..+.|.++..++|.+++.++.-.+-.. +...+.+-|++..+++ +++++. .-.| .+..++++.+..+|.
T Consensus 139 ~g~~a~~~l~~~G~~~I~~l~~~~~~~-~~~~R~~Gf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 216 (309)
T PRK11041 139 AAFEAVNYLHELGHKRIACIAGPEEMP-LCHYRLQGYVQALRRC-GITVDPQYIARGDFTFEAGAKALKQLLDLPQPPTA 216 (309)
T ss_pred HHHHHHHHHHHcCCceEEEEeCCcccc-chHHHHHHHHHHHHHc-CCCCCHHHeEeCCCCHHHHHHHHHHHHcCCCCCCE
Confidence 334455555566778888875332222 2233445555554443 222111 1112 344567776667999
Q ss_pred EecCC
Q psy559 252 MVMPN 256 (376)
Q Consensus 252 iV~~N 256 (376)
|++.|
T Consensus 217 i~~~~ 221 (309)
T PRK11041 217 VFCHS 221 (309)
T ss_pred EEEcC
Confidence 99865
No 63
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=36.52 E-value=1e+02 Score=25.67 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=39.0
Q ss_pred eeeEEEEcCCCCCHHHHH-HHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHHhcCeEEEcc
Q psy559 43 RNAVTMLPGGGIGPELMS-YVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGN 107 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~-aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~~dail~G~ 107 (376)
.++|.++=|-|+|..++- ...+..+..+++++.+.+..+... +...++|++|.||
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~----------~~~~~~DviLl~P 58 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAG----------EKGQNADVVLLGP 58 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhh----------ccccCCCEEEECH
Confidence 358999999999999888 666666666888777654432211 1234689999998
No 64
>PRK07742 phosphate butyryltransferase; Validated
Probab=36.24 E-value=3.4e+02 Score=26.71 Aligned_cols=107 Identities=12% Similarity=0.213 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CcEEEEecCCccccchHHHHHHHH--HHHh--hCCCeeee-eeeHHHHHHH------
Q psy559 175 TAANSYRLSKYAFEYAKKFGR--KKVTTVHKANIMKISDGLFLEISR--KVAK--EYPEIEHN-DMIIDNTCMQ------ 241 (376)
Q Consensus 175 Tr~~~eRiar~AFe~A~~r~r--k~Vt~v~KaNvl~~sdglf~~~~~--eva~--eyP~I~~e-~~~vD~~~~~------ 241 (376)
|.+....|+..|-++|+.-|. -||-+..=.+--......-++..+ ++.+ ++|+..+| ++..|++.-.
T Consensus 148 ~~e~l~~ia~~a~~~a~~lGie~PkVAlLs~gee~~k~~~~~~eA~~l~~~~~~~~~~~~~vdG~l~~D~A~~~~~a~~k 227 (299)
T PRK07742 148 DLEQKAAIIQNAVEVARAIGIDLPKVAPLAAVEVVNPAMQATIDAAALTQMNRRGQIKNCVVDGPLALDNAVSQIAAEHK 227 (299)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEecccCCCCCCHHHHHHHHHHHHHhhCCCCCeEEeechHHHHhcCHHHHHHh
Confidence 455566778888899987653 355555322211112233343322 2222 46998884 4446766533
Q ss_pred HHhCC--CCccEEecCCcc-hhhHhhhhhhhcCCcccccccccCC
Q psy559 242 LVSNP--KQFDVMVMPNLY-GAITSNVICGLIGGAGLISGKNYGD 283 (376)
Q Consensus 242 Lv~~P--~~fdViV~~Nlf-GDILSDlaa~l~GglGl~psanig~ 283 (376)
-..+| ++-||+|.||+- |+|+--+..-+.|+ .+ .+.-+|.
T Consensus 228 ~~~s~v~G~Anvli~Pnl~agNi~~K~l~~~~~~-~~-g~il~G~ 270 (299)
T PRK07742 228 GIVSDVAGKADILLVPTIEAGNVLYKSLVYFADA-KV-GAMIAGA 270 (299)
T ss_pred CCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcCC-cE-eceeecc
Confidence 11222 366899999998 99988877777665 43 3333453
No 65
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=35.68 E-value=1.3e+02 Score=25.67 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=40.6
Q ss_pred eeEEEEcCC----CCCHHHHHHHHHHHHHcCCCeeEEEEEccccCC------------CCCChHHHHHHHHhcCeEEEcc
Q psy559 44 NAVTMLPGG----GIGPELMSYVKEVFRYAGVPVDFETVQIDPKSD------------SNDDLEYAITSIRRNGVAIKGN 107 (376)
Q Consensus 44 ~~I~vipGD----GIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~------------~~~~~~~~~~~~~~~dail~G~ 107 (376)
+||.+|-|- |....+++++.+.++..+ ++.+.+++..... ..+..++..+.++++|+++++.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee
Confidence 356666553 677788888888888775 4455556554310 0112566789999999998865
No 66
>PRK12861 malic enzyme; Reviewed
Probab=35.53 E-value=2.7e+02 Score=31.52 Aligned_cols=98 Identities=18% Similarity=0.184 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCC-CcEEEEecCCc---cccchHHHHHHHHHHHhhCCCeeee-eeeHHHHHHHHHh-----
Q psy559 175 TAANSYRLSKYAFEYAKKFGR-KKVTTVHKANI---MKISDGLFLEISRKVAKEYPEIEHN-DMIIDNTCMQLVS----- 244 (376)
Q Consensus 175 Tr~~~eRiar~AFe~A~~r~r-k~Vt~v~KaNv---l~~sdglf~~~~~eva~eyP~I~~e-~~~vD~~~~~Lv~----- 244 (376)
|-+....|+..|.++|+.-|- -||-+..=+|. -..+....++..+-+.+++|+++++ ++..|++.-.-+.
T Consensus 611 ~aeqla~Ia~~aa~~ak~lGiePkVAlLS~St~GS~~~~~~~km~eA~~l~~~~~pd~~vdGemq~DaAl~~e~a~~K~p 690 (764)
T PRK12861 611 DAEQIAEFTIAAARQMEWLNLTPKVALLSRSNFGSGSAASGVKMRRALEIVREQAPDLEADGEMHGDCALDEGLRARLLP 690 (764)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCchhHHHHHHHHHHhhCCCcEEEecCcHHHhCCHHHHHhcCC
Confidence 344455566777788877653 35655542222 1112345566666566779998875 5557866433221
Q ss_pred -C--CCCccEEecCCc-chhhHhhhhhhhcCC
Q psy559 245 -N--PKQFDVMVMPNL-YGAITSNVICGLIGG 272 (376)
Q Consensus 245 -~--P~~fdViV~~Nl-fGDILSDlaa~l~Gg 272 (376)
+ -+.-||+|+||+ =|+|+-.+.-.+.|+
T Consensus 691 ~s~vaG~ANVLVfPnLeAGNI~yKll~~l~g~ 722 (764)
T PRK12861 691 MSPLKGAANLLVCPNVDAGNIAYNLLKTEAGS 722 (764)
T ss_pred CCcCCCcCCEEEECCcchhhHHHHHHHHHcCC
Confidence 2 246789999999 699998888777653
No 67
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=34.60 E-value=2e+02 Score=26.32 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeee-------eeeeHH---HHHHHHHhCCCCccEE
Q psy559 183 SKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEH-------NDMIID---NTCMQLVSNPKQFDVM 252 (376)
Q Consensus 183 ar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~-------e~~~vD---~~~~~Lv~~P~~fdVi 252 (376)
++.+.++..+.|.+++.++.-..-. .....+.+-|++..+++ ++++ ...-.+ .++..+++.+..+|+|
T Consensus 104 ~~~~~~~l~~~g~~~i~~i~~~~~~-~~~~~R~~gf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 181 (268)
T cd06270 104 GYLATEHLIELGHRKIACITGPLTK-EDARLRLQGYRDALAEA-GIALDESLIIEGDFTEEGGYAAMQELLARGAPFTAV 181 (268)
T ss_pred HHHHHHHHHHCCCceEEEEeCCccc-ccHHHHHHHHHHHHHHc-CCCCCcceEEECCCCHHHHHHHHHHHHhCCCCCCEE
Confidence 4445555555577788777422111 12234444455544443 1111 111111 2334555555579999
Q ss_pred ecCC
Q psy559 253 VMPN 256 (376)
Q Consensus 253 V~~N 256 (376)
+++|
T Consensus 182 ~~~~ 185 (268)
T cd06270 182 FCAN 185 (268)
T ss_pred EEcC
Confidence 9998
No 68
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=33.00 E-value=1.8e+02 Score=29.18 Aligned_cols=96 Identities=22% Similarity=0.321 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhCC--CCcEEEEecCCccccch---HHHHHHHHHHHhhCCCeeee-eeeHHHHHHHHHh------
Q psy559 177 ANSYRLSKYAFEYAKKFG--RKKVTTVHKANIMKISD---GLFLEISRKVAKEYPEIEHN-DMIIDNTCMQLVS------ 244 (376)
Q Consensus 177 ~~~eRiar~AFe~A~~r~--rk~Vt~v~KaNvl~~sd---glf~~~~~eva~eyP~I~~e-~~~vD~~~~~Lv~------ 244 (376)
+..-.|+..|-+.|++-| .-||-++.=+|--.... .--++..+-+.+.+|+..+| ++.+|.+.-.=+.
T Consensus 175 e~la~Ia~~aa~~~~~~g~~~PkvA~LS~s~~gs~~~~s~~~~~~a~~~~~~~~~~~~vdGe~q~D~Al~~~~~~~k~~~ 254 (319)
T PF01515_consen 175 EQLAEIAENAAETARRFGIEEPKVALLSYSEFGSPKGPSTDKVREAVEIAREKQPDLIVDGEMQFDAALSPEVAAKKYPF 254 (319)
T ss_dssp HHHHHHHHHHHHHHHHTTSSS-EEEEE-SSSTTSSTSHHHHHHHHHHHHHHHHCTTSEEEEEE-HHHHH-HHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEEeCccCCCCCCchHHHHHHHHHHHHhhCCCceecCccccchhcCHHHHHHhCCC
Confidence 344456666777777766 23666665544432111 22333333345679998775 5668887643222
Q ss_pred CC--CCccEEecCCcc-hhhHhhhhhhhcCC
Q psy559 245 NP--KQFDVMVMPNLY-GAITSNVICGLIGG 272 (376)
Q Consensus 245 ~P--~~fdViV~~Nlf-GDILSDlaa~l~Gg 272 (376)
+| ++-||+|.||+- |+|+--+...+.|+
T Consensus 255 s~v~G~AnvLIfPnl~agNi~~K~l~~~~~~ 285 (319)
T PF01515_consen 255 SPVAGDANVLIFPNLEAGNIAYKLLQRLGGA 285 (319)
T ss_dssp SSTTTC-SEEE-SSHHHHHHHHHHHHHTTTE
T ss_pred CccCCcCCEEEeCChhHhHHHHHHHHHhhCc
Confidence 22 367899999998 99998888777764
No 69
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=32.74 E-value=3.9e+02 Score=24.48 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=35.0
Q ss_pred HHHHHHhCCCCcEEEEecCCccccchHHHHH---------------HHHHHHhhCCCeeeeee--eHHHH-HHHHHhCCC
Q psy559 186 AFEYAKKFGRKKVTTVHKANIMKISDGLFLE---------------ISRKVAKEYPEIEHNDM--IIDNT-CMQLVSNPK 247 (376)
Q Consensus 186 AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~---------------~~~eva~eyP~I~~e~~--~vD~~-~~~Lv~~P~ 247 (376)
|-.+|+. |-+++|++|...+-. ++ |-|+ ..+++.+-+|+++++.. .++.. ...++ .
T Consensus 37 a~~La~~-Gv~~i~lvD~d~ve~-sN-L~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~---~ 110 (202)
T TIGR02356 37 ALYLAGA-GVGTIVIVDDDHVDL-SN-LQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLI---N 110 (202)
T ss_pred HHHHHHc-CCCeEEEecCCEEcc-cc-hhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCHHHHHHHH---h
Confidence 3344444 778999999864422 21 3332 23445566888877643 33332 12233 4
Q ss_pred CccEEecC
Q psy559 248 QFDVMVMP 255 (376)
Q Consensus 248 ~fdViV~~ 255 (376)
+||+||..
T Consensus 111 ~~D~Vi~~ 118 (202)
T TIGR02356 111 NVDLVLDC 118 (202)
T ss_pred CCCEEEEC
Confidence 68977755
No 70
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=32.63 E-value=93 Score=31.15 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=53.6
Q ss_pred hHHHHHHHHhcCeEEEcccccCC------CC-chhhHHHhhhh--cccEee-cc-----c----------ccc-------
Q psy559 90 LEYAITSIRRNGVAIKGNIETGS------LD-SLWTLKLCRLI--LRVIAM-MI-----L----------SVR------- 137 (376)
Q Consensus 90 ~~~~~~~~~~~dail~G~i~~p~------~~-~~~~~~LR~~~--ldLyan-~~-----p----------g~~------- 137 (376)
.++++++|+++|.|++||- .|. -. +...-+|| +. .-.|.+ .+ . |++
T Consensus 174 ~p~vl~AI~~AD~IVlGPg-sp~TSI~P~LlVpgI~eAL~-~s~A~vV~Vspiig~~~v~Gpa~~~m~a~G~~~s~~gva 251 (303)
T cd07186 174 APEVLEAIEDADLVIIGPS-NPVTSIGPILALPGIREALR-DKKAPVVAVSPIIGGKAVSGPAAKLMAALGFEPSAAGVA 251 (303)
T ss_pred CHHHHHHHHhCCEEEECCC-ccHHHhhhhccchhHHHHHH-hCCCCEEEEcCCCCCCCCCchHHHHHHHcCCCCcHHHHH
Confidence 5789999999999999995 331 11 22233566 44 556655 11 1 111
Q ss_pred cCCCC-ccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHH
Q psy559 138 CRQQG-IDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAF 187 (376)
Q Consensus 138 ~~~~~-iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AF 187 (376)
..|++ +|..|+-+--.+.=...+.....=...++..-+.+..+|++|...
T Consensus 252 ~~Y~~~~d~~vid~~D~~~~~~~~~~g~~v~~~~t~m~~~~~~~~la~~~l 302 (303)
T cd07186 252 EIYGDLLDGFVIDEADRALADAIEALGIEVSRTDTLMTDEEDKIRLAREVL 302 (303)
T ss_pred HHhhccccEEEEcccccccchhcccCCceeEecCccCCCHHHHHHHHHHHh
Confidence 12455 488888653322111111111111345677778888899998865
No 71
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=31.76 E-value=1.2e+02 Score=29.01 Aligned_cols=67 Identities=18% Similarity=0.359 Sum_probs=45.9
Q ss_pred cccccchhhhhhccCCCCeeeEEEEcCCCCC---HHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHHhcC
Q psy559 25 AFVMPKLKEVYTKAKYGGRNAVTMLPGGGIG---PELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNG 101 (376)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~I~vipGDGIG---pEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~~d 101 (376)
++..|.++++++ +..+|++||=.+.. .+-++...++++.+|+.+.. ++. +++..+.+.++|
T Consensus 18 ~~~~~~~~~~~~-----~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~--l~~---------~~d~~~~l~~ad 81 (233)
T PRK05282 18 EHALPLIAELLA-----GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTG--IHR---------VADPVAAIENAE 81 (233)
T ss_pred HHHHHHHHHHHc-----CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEE--ecc---------chhhHHHHhcCC
Confidence 556666666664 46789999987754 45677888888888865443 322 124467888999
Q ss_pred eEEEcc
Q psy559 102 VAIKGN 107 (376)
Q Consensus 102 ail~G~ 107 (376)
+++.+=
T Consensus 82 ~I~v~G 87 (233)
T PRK05282 82 AIFVGG 87 (233)
T ss_pred EEEECC
Confidence 988753
No 72
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=31.58 E-value=2.8e+02 Score=25.48 Aligned_cols=78 Identities=13% Similarity=0.074 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhC--CCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeee-----eeHH---HHHHHHHh-CCCC
Q psy559 180 YRLSKYAFEYAKKF--GRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHND-----MIID---NTCMQLVS-NPKQ 248 (376)
Q Consensus 180 eRiar~AFe~A~~r--~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~-----~~vD---~~~~~Lv~-~P~~ 248 (376)
....+.+.++..++ |.+++.++.-..-.. ......+-+++..+++|+++... .-.+ .+..++++ +|..
T Consensus 107 ~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 185 (273)
T cd06309 107 VEEGRRAADWLAKATGGKGNIVELQGTVGSS-VAIDRKKGFAEVIKKYPNMKIVASQTGDFTRAKGKEVMEALLKAHGDD 185 (273)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeCCCCCc-hHHHHHHHHHHHHHHCCCCEEeeccCCcccHHHHHHHHHHHHHhCCCC
Confidence 34455555665554 677887775321111 22344455555555666554321 1122 23455664 5657
Q ss_pred ccEEecCCcc
Q psy559 249 FDVMVMPNLY 258 (376)
Q Consensus 249 fdViV~~Nlf 258 (376)
+|+|++.|-.
T Consensus 186 ~~aI~~~~d~ 195 (273)
T cd06309 186 IDAVYAHNDE 195 (273)
T ss_pred ccEEEECCcH
Confidence 9999998744
No 73
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=31.53 E-value=5.2e+02 Score=25.48 Aligned_cols=95 Identities=22% Similarity=0.203 Sum_probs=57.7
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CcEEEEe---cCCc-cccchHHHHHHHHHHHhhCCCeeeee-eeHHHHHH------H
Q psy559 175 TAANSYRLSKYAFEYAKKFGR--KKVTTVH---KANI-MKISDGLFLEISRKVAKEYPEIEHND-MIIDNTCM------Q 241 (376)
Q Consensus 175 Tr~~~eRiar~AFe~A~~r~r--k~Vt~v~---KaNv-l~~sdglf~~~~~eva~eyP~I~~e~-~~vD~~~~------~ 241 (376)
|-+.-..|++.|-+.|++-|. -||-++. |.|- ++.|. --++. .++.++-|+..++- +..|++.- +
T Consensus 125 ~~eqk~~I~~nA~~~ar~lGie~PkVAlLS~se~~s~~~~st~-~a~~l-~~~~~~~~~~~vdGpl~~D~Al~~e~a~~K 202 (271)
T TIGR02709 125 TQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKMPSSV-LAKEV-TAHFNDQQEATVFGPLSLDLATSEEAVAHK 202 (271)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCeEEEEecccCCCCCCchHH-HHHHH-HHHHHhCCCCEEEecCchhhhcCHHHHHhh
Confidence 566677889999999998764 3555443 3332 12221 22233 33443338887754 44676643 2
Q ss_pred HHhCC--CCccEEecCCcc-hhhHhhhhhhhcC
Q psy559 242 LVSNP--KQFDVMVMPNLY-GAITSNVICGLIG 271 (376)
Q Consensus 242 Lv~~P--~~fdViV~~Nlf-GDILSDlaa~l~G 271 (376)
-+.+| ++-||+|.||+- |+|+--+.--+.|
T Consensus 203 ~~~s~vaG~AniLI~PnleaGNi~yK~l~~~~~ 235 (271)
T TIGR02709 203 RYSGPIMGDADILVVPTIDVGNCLYKSLTLFGH 235 (271)
T ss_pred CCCCCCCCcCCEEEcCChHHHHHHHHHHHHhcC
Confidence 23344 577899999998 9998877665543
No 74
>KOG1014|consensus
Probab=31.11 E-value=77 Score=31.84 Aligned_cols=45 Identities=24% Similarity=0.434 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHH
Q psy559 184 KYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDN 237 (376)
Q Consensus 184 r~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~ 237 (376)
.||+|+|++ |- +|.++- + +..-...+.+|+.++|+ |++....+|=
T Consensus 64 ayA~eLAkr-G~-nvvLIs-----R-t~~KL~~v~kEI~~~~~-vev~~i~~Df 108 (312)
T KOG1014|consen 64 AYARELAKR-GF-NVVLIS-----R-TQEKLEAVAKEIEEKYK-VEVRIIAIDF 108 (312)
T ss_pred HHHHHHHHc-CC-EEEEEe-----C-CHHHHHHHHHHHHHHhC-cEEEEEEEec
Confidence 479999984 54 477763 4 56777889999999998 8777666653
No 75
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=30.87 E-value=38 Score=34.28 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=16.8
Q ss_pred eeEEEEcCC--CCCHHHHHHHH
Q psy559 44 NAVTMLPGG--GIGPELMSYVK 63 (376)
Q Consensus 44 ~~I~vipGD--GIGpEV~~aa~ 63 (376)
.+|++-.|| ||||||+-.++
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (332)
T PRK03743 4 PIIAIPIGDPAGIGPEIVVKTL 25 (332)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 479999998 89999987664
No 76
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.44 E-value=4.4e+02 Score=24.44 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEe-cCCccccchHHHHHHHHHHHhhCCCeeeeee-----eHH---HHHHHHHhCC
Q psy559 176 AANSYRLSKYAFEYAKKFGRKKVTTVH-KANIMKISDGLFLEISRKVAKEYPEIEHNDM-----IID---NTCMQLVSNP 246 (376)
Q Consensus 176 r~~~eRiar~AFe~A~~r~rk~Vt~v~-KaNvl~~sdglf~~~~~eva~eyP~I~~e~~-----~vD---~~~~~Lv~~P 246 (376)
..+.+..+++-.+.. .|.++|-++. ..+.. +.....+-+++..+++|++++... -.+ ....++++..
T Consensus 106 ~~~g~~~~~~l~~~~--~g~~~i~~l~g~~~~~--~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (272)
T cd06313 106 YFMGASVAQALCNAM--GGKGKIAMLQGALGHT--GAQGRAQGFNDVIKKYPDIEVVDEQPANWDVSKAARIWETWLTKY 181 (272)
T ss_pred HHHHHHHHHHHHHHc--CCCceEEEEECCCCCc--chhHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHHHHHhC
Confidence 344444444444332 1566777774 22222 223455556666566665443211 111 2333444433
Q ss_pred CCccEEecCCcc
Q psy559 247 KQFDVMVMPNLY 258 (376)
Q Consensus 247 ~~fdViV~~Nlf 258 (376)
..+|+|++.|=.
T Consensus 182 ~~~~ai~~~nd~ 193 (272)
T cd06313 182 PQLDGAFCHNDS 193 (272)
T ss_pred CCCCEEEECCCc
Confidence 358999998743
No 77
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=30.34 E-value=3.2e+02 Score=24.92 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeH-------H---HHHHHHHhC
Q psy559 176 AANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMII-------D---NTCMQLVSN 245 (376)
Q Consensus 176 r~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~v-------D---~~~~~Lv~~ 245 (376)
....+..+++..+.. .|+++|.+++=.+. . +...-.+-+++..+++|++.+...+. + ..+.++++.
T Consensus 103 ~~~g~~~~~~l~~~~--~g~~~i~~i~~~~~-~-~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (273)
T cd06305 103 YSLARLSLDQLVKDL--GGKGNVGYVNVAGF-P-PLDRRYDVWQAVLKAYPGIKEVAELGDVSNNTAQDAAAQVEAVLKK 178 (273)
T ss_pred HHHHHHHHHHHHHHh--CCCCCEEEEEccCC-c-hHHHHHHHHHHHHHHCCCcEEecccccccccchhHHHHHHHHHHHH
Confidence 344455555555543 35677777752211 1 12222335555556777554332221 1 233455554
Q ss_pred CCCc--cEEecCC
Q psy559 246 PKQF--DVMVMPN 256 (376)
Q Consensus 246 P~~f--dViV~~N 256 (376)
.... +.|++.|
T Consensus 179 ~~~~~~~ai~~~~ 191 (273)
T cd06305 179 YPKGGIDAIWAAW 191 (273)
T ss_pred CCCcccCeEEEcC
Confidence 4456 8888875
No 78
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.98 E-value=3.4e+02 Score=24.65 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCC---C--ee-eeeee---HHHHHHHHHhCCCCccE
Q psy559 181 RLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYP---E--IE-HNDMI---IDNTCMQLVSNPKQFDV 251 (376)
Q Consensus 181 Riar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP---~--I~-~e~~~---vD~~~~~Lv~~P~~fdV 251 (376)
+..+.|.++..++|.++|.++.= +--..+.....+-|++..+++. . .. ....- .-.+..++++....+|+
T Consensus 108 ~~g~~~~~~l~~~g~~~i~~i~~-~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 186 (270)
T cd06294 108 QAGYDATEYLIKLGHKKIAFVGG-DLDLEVTQDRLQGYKQALEDHGIPDRNEVIISLDFSEEGGYKALKKLLEQHPRPTA 186 (270)
T ss_pred HHHHHHHHHHHHcCCccEEEecC-CcccHHHHHHHHHHHHHHHHcCCCCCcceEEecCCchHHHHHHHHHHHhCCCCCCE
Confidence 44555556655667788888852 2111123344556666655542 1 11 11111 11233456665558999
Q ss_pred EecCC
Q psy559 252 MVMPN 256 (376)
Q Consensus 252 iV~~N 256 (376)
|++.|
T Consensus 187 i~~~~ 191 (270)
T cd06294 187 IVATD 191 (270)
T ss_pred EEECC
Confidence 99987
No 79
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=29.57 E-value=2e+02 Score=22.94 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhh--CCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchh
Q psy559 184 KYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKE--YPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGA 260 (376)
Q Consensus 184 r~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~e--yP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGD 260 (376)
..+..+|++.+..+|+.+|... -..+.+++-.++ .+.+++.. -|.. ..+-..+..||+|++.+-..+
T Consensus 32 ~~~~~l~~~~~~~~v~~vD~s~-------~~~~~a~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~D~v~~~~~~~~ 100 (124)
T TIGR02469 32 SITIEAARLVPNGRVYAIERNP-------EALRLIERNARRFGVSNIVIVE--GDAP-EALEDSLPEPDRVFIGGSGGL 100 (124)
T ss_pred HHHHHHHHHCCCceEEEEcCCH-------HHHHHHHHHHHHhCCCceEEEe--cccc-ccChhhcCCCCEEEECCcchh
Confidence 3456667665457899998433 223333333322 34443322 2211 112234568999998764433
No 80
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=29.36 E-value=45 Score=33.96 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=17.0
Q ss_pred eeEEEEcCC--CCCHHHHHHHH
Q psy559 44 NAVTMLPGG--GIGPELMSYVK 63 (376)
Q Consensus 44 ~~I~vipGD--GIGpEV~~aa~ 63 (376)
.+|++-.|| ||||||+-.++
T Consensus 10 p~IaIT~GDpaGIGPEii~ka~ 31 (345)
T PRK02746 10 PRLAITLGDPAGIGPEVILKAL 31 (345)
T ss_pred CcEEEeCCCCcchHHHHHHHHH
Confidence 479999998 89999987664
No 81
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=29.02 E-value=3.5e+02 Score=23.97 Aligned_cols=76 Identities=12% Similarity=-0.026 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeee----e-eHH---HHHHHHHhCCCCccEE
Q psy559 181 RLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHND----M-IID---NTCMQLVSNPKQFDVM 252 (376)
Q Consensus 181 Riar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~----~-~vD---~~~~~Lv~~P~~fdVi 252 (376)
...+.+.+++.+.+.++|.+++-.+-.. ....+.+-+++..+++++++... . -.+ ....+++..-.+.|++
T Consensus 104 ~~~~~~~~~l~~~g~~~i~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 182 (264)
T cd01537 104 QAGYLAGEHLAEKGHRRIALLAGPLGSS-TARERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAI 182 (264)
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCCCCC-cHHHHHHHHHHHHHHcCCcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 3556667777776778888886543322 22344455555444443221111 1 122 2344555543378988
Q ss_pred ecCCc
Q psy559 253 VMPNL 257 (376)
Q Consensus 253 V~~Nl 257 (376)
++.|-
T Consensus 183 ~~~~~ 187 (264)
T cd01537 183 FAAND 187 (264)
T ss_pred EEcCc
Confidence 88863
No 82
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=29.02 E-value=2.5e+02 Score=27.01 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=41.6
Q ss_pred CeeeEEEEcCCCCCH-HHHHHHHHHHHHcCCC-eeEEEEEccccCCCCCChHHHHHHHHhcCeEEEcc
Q psy559 42 GRNAVTMLPGGGIGP-ELMSYVKEVFRYAGVP-VDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGN 107 (376)
Q Consensus 42 ~~~~I~vipGDGIGp-EV~~aa~~Vl~a~~~~-ie~~~~~~g~~~~~~~~~~~~~~~~~~~dail~G~ 107 (376)
..-+|++||-.+-.| +..+...+.++.+|+. ++. +++... .....++.++.++++|+|+++-
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~--l~i~~r--~~a~~~~~~~~l~~ad~I~~~G 90 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKI--LDVRER--EDASDENAIALLSNATGIFFTG 90 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEE--EecCCh--HHccCHHHHHHHhhCCEEEEeC
Confidence 346999999665455 6678888899988874 443 333211 1112456778899999999864
No 83
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=28.67 E-value=28 Score=36.19 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=19.3
Q ss_pred CccEEEEccCCcceeeccccccc
Q psy559 142 GIDIVIVRQNTEGEYAMLEHESV 164 (376)
Q Consensus 142 ~iDivivREnteG~Y~g~e~~~~ 164 (376)
..+++|+||||||.|.+.+....
T Consensus 124 ~~~i~i~R~~~~~~y~~iD~viv 146 (409)
T TIGR00127 124 EKPIIIGRHAFGDQYRATDFVVP 146 (409)
T ss_pred CCCeeeeccccCCCcCceEEEEe
Confidence 37899999999999998876543
No 84
>PRK05805 phosphate butyryltransferase; Validated
Probab=28.43 E-value=5.7e+02 Score=25.24 Aligned_cols=105 Identities=16% Similarity=0.226 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CcEEEE---ecCCccccchHHHHH--HHHHHH--hhCCCeeee-eeeHHHHHHH---
Q psy559 175 TAANSYRLSKYAFEYAKKFGR--KKVTTV---HKANIMKISDGLFLE--ISRKVA--KEYPEIEHN-DMIIDNTCMQ--- 241 (376)
Q Consensus 175 Tr~~~eRiar~AFe~A~~r~r--k~Vt~v---~KaNvl~~sdglf~~--~~~eva--~eyP~I~~e-~~~vD~~~~~--- 241 (376)
|-+....|++.|-+.|++-|. -||-+. .|.|- ...-.++ ...++. .++|+..+| ++..|++.-.
T Consensus 149 ~~~q~~~I~~~a~~~~~~lG~e~PkVA~LS~s~~~~~---~~~~t~~a~~l~~~~~~~~~~~~~vdG~l~~D~A~~~~~a 225 (301)
T PRK05805 149 DLKEKIDIINNAVTVAHAIGIENPKVAPICAVEVVNP---KMPATLDAALLSKMSDRGQIKGCIVDGPLALDNALSEEAA 225 (301)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCeEEEEecccCCCC---CChHHHHHHHHHHHHhhCcCCCeEEEechHHHHhcCHHHH
Confidence 455666788888899988765 244443 33231 1122222 222222 246998884 5557877622
Q ss_pred ---HHhCC--CCccEEecCCcc-hhhHhhhhhhhcCCcccccccccCCC
Q psy559 242 ---LVSNP--KQFDVMVMPNLY-GAITSNVICGLIGGAGLISGKNYGDH 284 (376)
Q Consensus 242 ---Lv~~P--~~fdViV~~Nlf-GDILSDlaa~l~GglGl~psanig~~ 284 (376)
-+.+| ++.||+|.||+- |+|+--+..-+.| .-. .+.-.|-.
T Consensus 226 ~~k~~~s~v~G~Anvli~Pnl~agNi~yK~l~~~~~-~~~-~gil~G~~ 272 (301)
T PRK05805 226 KHKGIDGPVAGNADILLVPNIEAGNVMYKTLTYFAD-CKN-GGLLVGTS 272 (301)
T ss_pred HHhCCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcC-CeE-EeeeecCC
Confidence 22232 367899999987 9998877766654 223 33556644
No 85
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=28.18 E-value=46 Score=33.64 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=16.9
Q ss_pred eeEEEEcCC--CCCHHHHHHHH
Q psy559 44 NAVTMLPGG--GIGPELMSYVK 63 (376)
Q Consensus 44 ~~I~vipGD--GIGpEV~~aa~ 63 (376)
.+|++-.|| ||||||+-.++
T Consensus 6 p~iaIT~GDpaGIGpEii~kal 27 (329)
T PRK01909 6 LQIAITTGEPAGVGPELTVRAL 27 (329)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 379999998 89999987665
No 86
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=27.70 E-value=1.1e+02 Score=24.77 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=34.7
Q ss_pred eEEEEcCCCCCHHHHH-HHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHHhcCeEEEccc
Q psy559 45 AVTMLPGGGIGPELMS-YVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNI 108 (376)
Q Consensus 45 ~I~vipGDGIGpEV~~-aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~~dail~G~i 108 (376)
+|.++=|.|++..++. ...+.++.-+++++++...++.. -+...++|++|.+|-
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~----------~~~~~~~Diil~~Pq 55 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESEL----------EEYIDDADVVLLGPQ 55 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHH----------HHhcCCCCEEEEChh
Confidence 4788889999998663 23333444477777766554332 233457889888873
No 87
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=27.66 E-value=1.6e+02 Score=28.22 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCCc-EEEEec-CCccccchHH--HHHHHHHHHhhCCC--eeeeeeeHH---HHHHHHHhCCCCccEE
Q psy559 182 LSKYAFEYAKKFGRKK-VTTVHK-ANIMKISDGL--FLEISRKVAKEYPE--IEHNDMIID---NTCMQLVSNPKQFDVM 252 (376)
Q Consensus 182 iar~AFe~A~~r~rk~-Vt~v~K-aNvl~~sdgl--f~~~~~eva~eyP~--I~~e~~~vD---~~~~~Lv~~P~~fdVi 252 (376)
..+.|.++-.++|.++ +.++.- .+....-+++ |++.+++-.-..++ |.....-.. .++.+|+.++..||.|
T Consensus 105 a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai 184 (279)
T PF00532_consen 105 AGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAI 184 (279)
T ss_dssp HHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEE
T ss_pred HHHHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEE
Confidence 4456677777788888 666553 2332212222 44444432110011 111111122 4567888888889999
Q ss_pred ecCC
Q psy559 253 VMPN 256 (376)
Q Consensus 253 V~~N 256 (376)
+|.|
T Consensus 185 ~~~n 188 (279)
T PF00532_consen 185 FCAN 188 (279)
T ss_dssp EESS
T ss_pred EEeC
Confidence 9988
No 88
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=27.39 E-value=4.8e+02 Score=23.82 Aligned_cols=75 Identities=19% Similarity=0.148 Sum_probs=38.1
Q ss_pred HHHHHHHHHhC--CCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeee--------eHHHHHHHHHhCCCCccEE
Q psy559 183 SKYAFEYAKKF--GRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDM--------IIDNTCMQLVSNPKQFDVM 252 (376)
Q Consensus 183 ar~AFe~A~~r--~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~--------~vD~~~~~Lv~~P~~fdVi 252 (376)
.+.+.++..++ +.+++.++.=..-.. ....+.+-+++..++++++++... -.-.++.++++.....|+|
T Consensus 111 g~~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 189 (272)
T cd06300 111 GKQGAEWLVKELGGKGNVLVVRGLAGHP-VDEDRYAGAKEVLKEYPGIKIVGEVYGDWDQAVAQKAVADFLASNPDVDGI 189 (272)
T ss_pred HHHHHHHHHHHcCCCceEEEEECCCCCc-chHHHHHHHHHHHHHCCCcEEEeecCCCCCHHHHHHHHHHHHHhCCCcCEE
Confidence 44444444444 667777774211111 112334445555556664543211 1123555666544478999
Q ss_pred ecCCcc
Q psy559 253 VMPNLY 258 (376)
Q Consensus 253 V~~Nlf 258 (376)
++.|-.
T Consensus 190 ~~~~d~ 195 (272)
T cd06300 190 WTQGGD 195 (272)
T ss_pred EecCCC
Confidence 998765
No 89
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=27.05 E-value=70 Score=32.40 Aligned_cols=18 Identities=39% Similarity=0.842 Sum_probs=14.7
Q ss_pred eeeEEEEcCC--CCCHHHHH
Q psy559 43 RNAVTMLPGG--GIGPELMS 60 (376)
Q Consensus 43 ~~~I~vipGD--GIGpEV~~ 60 (376)
+.+|++-+|| ||||||+.
T Consensus 3 ~~~iAit~GDPaGIGPEi~~ 22 (332)
T COG1995 3 KPRIAITMGDPAGIGPELVA 22 (332)
T ss_pred CCceEecCCCcccCCHHHHH
Confidence 4578999998 99999943
No 90
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=26.50 E-value=1.2e+02 Score=30.36 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=53.8
Q ss_pred hHHHHHHHHhcCeEEEcccccCC------CC-chhhHHHhhhhcccEee-cccc---------------cc-------cC
Q psy559 90 LEYAITSIRRNGVAIKGNIETGS------LD-SLWTLKLCRLILRVIAM-MILS---------------VR-------CR 139 (376)
Q Consensus 90 ~~~~~~~~~~~dail~G~i~~p~------~~-~~~~~~LR~~~ldLyan-~~pg---------------~~-------~~ 139 (376)
.++++++|+++|+|++||- .|. -. +...-+|| +.-=.|.. .+-| ++ ..
T Consensus 173 ~peal~AI~~AD~IIlGPg-sp~TSI~P~LlVpgIreAL~-~a~vV~Vspiig~~~v~GpA~~~m~a~g~e~s~~gva~~ 250 (297)
T TIGR01819 173 APKVLEAIRKEDNILIGPS-NPITSIGPILSLPGIREALR-DKKVVAVSPIVGNAPVSGPAGKLMAAVGVEVSAAGVAEH 250 (297)
T ss_pred CHHHHHHHHhCCEEEECCC-ccHHHhhhhcCchhHHHHHH-cCCEEEEccCcCCCcCCChHHHHHHHcCCCccHHHHHHH
Confidence 5799999999999999994 331 11 22234577 65556655 1111 11 12
Q ss_pred CCCc-cEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHH
Q psy559 140 QQGI-DIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAF 187 (376)
Q Consensus 140 ~~~i-DivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AF 187 (376)
|+++ |..|+-+--...-... ...=.+.++..-+.+..+|++|.+.
T Consensus 251 Y~~~~d~~vid~~D~~~~~~~---g~~v~~~~t~m~~~~~~~~la~~~l 296 (297)
T TIGR01819 251 YGDFLDVFVVDEVDKADEDRF---GCHVRRTDTLMTTLEDTARLARAVV 296 (297)
T ss_pred hhccccEEEEecCchhhhccC---CceeEecCcccCCHHHHHHHHHHHh
Confidence 4554 8888865332211111 0011245677778888899998865
No 91
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=26.47 E-value=3.9e+02 Score=24.28 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=13.7
Q ss_pred HHHHHHHhCCCCccEEecCC
Q psy559 237 NTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 237 ~~~~~Lv~~P~~fdViV~~N 256 (376)
....++.+....+|+|++.|
T Consensus 167 ~~~~~~l~~~~~~~ai~~~~ 186 (268)
T cd06273 167 AALRQLLEQPPRPTAVICGN 186 (268)
T ss_pred HHHHHHHcCCCCCCEEEEcC
Confidence 34456666556789999976
No 92
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.22 E-value=4e+02 Score=24.49 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=36.5
Q ss_pred HHHHHHHHhC--CCCcEEEEe-cCCccccchHHHHHHHHHHHhhCCCeeeeee-e----HH---HHHHHHHhCCCCccEE
Q psy559 184 KYAFEYAKKF--GRKKVTTVH-KANIMKISDGLFLEISRKVAKEYPEIEHNDM-I----ID---NTCMQLVSNPKQFDVM 252 (376)
Q Consensus 184 r~AFe~A~~r--~rk~Vt~v~-KaNvl~~sdglf~~~~~eva~eyP~I~~e~~-~----vD---~~~~~Lv~~P~~fdVi 252 (376)
+.+.++..++ ++++|.++. -.+ . +.....+-+++..++|| +++... . .+ ....++++....+|+|
T Consensus 114 ~~aa~~l~~~~~g~~~i~~~~g~~~-~--~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 189 (274)
T cd06311 114 RVAGEYIATKLGGNGNIVVLRGIPT-P--IDNERVDAFDAAIAKYP-IKILDRQYANWNRDDAFSVMQDLLTKFPKIDAV 189 (274)
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCC-c--chhHHHHHHHHHHhhCC-cEEEeccCCCCcHHHHHHHHHHHHHhCCCcCEE
Confidence 3444444333 567887774 222 2 23445566777666777 543221 1 11 2233455443368999
Q ss_pred ecCCc
Q psy559 253 VMPNL 257 (376)
Q Consensus 253 V~~Nl 257 (376)
++.|=
T Consensus 190 ~~~~d 194 (274)
T cd06311 190 WAHDD 194 (274)
T ss_pred EECCC
Confidence 99873
No 93
>KOG2666|consensus
Probab=25.54 E-value=7.1e+02 Score=25.67 Aligned_cols=156 Identities=13% Similarity=0.175 Sum_probs=89.8
Q ss_pred CCCeeEEEEEccccCC---C-------CCChHHHHHHHHhcCeEEEcccccCCCCchhhHHHhhhhcccEeecccccccC
Q psy559 70 GVPVDFETVQIDPKSD---S-------NDDLEYAITSIRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRCR 139 (376)
Q Consensus 70 ~~~ie~~~~~~g~~~~---~-------~~~~~~~~~~~~~~dail~G~i~~p~~~~~~~~~LR~~~ldLyan~~pg~~~~ 139 (376)
.-+++..-++++.... . +++.++..++||.-...+--.+ .-.+
T Consensus 24 cp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdi---------ekai------------------ 76 (481)
T KOG2666|consen 24 CPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDI---------EKAI------------------ 76 (481)
T ss_pred CCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecch---------HHHh------------------
Confidence 3457777777765432 1 1235777777765554332222 1122
Q ss_pred CCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHH
Q psy559 140 QQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISR 219 (376)
Q Consensus 140 ~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~ 219 (376)
+.-|+|+|.-||--.-.|.+ .|.+-++++. +...++|+..+ . ..=.+|.|+.|--.+-.--..++
T Consensus 77 -~eadlvfisvntptkt~g~g----kg~aadlky~-es~ar~ia~~s----~----~~kivvekstvpv~aaesi~~il- 141 (481)
T KOG2666|consen 77 -KEADLVFISVNTPTKTYGLG----KGKAADLKYW-ESAARMIADVS----V----SDKIVVEKSTVPVKAAESIEKIL- 141 (481)
T ss_pred -hhcceEEEEecCCcccccCC----CCcccchhHH-HHHHHHHHHhc----c----CCeEEEeeccccchHHHHHHHHH-
Confidence 37899999998866555543 2345565543 44455555554 2 22356788888654433333333
Q ss_pred HHHhhCCCeeeeee-----eHHHHHHHHHhCCCCcc---------------------------EEecCCcchhhHhhhhh
Q psy559 220 KVAKEYPEIEHNDM-----IIDNTCMQLVSNPKQFD---------------------------VMVMPNLYGAITSNVIC 267 (376)
Q Consensus 220 eva~eyP~I~~e~~-----~vD~~~~~Lv~~P~~fd---------------------------ViV~~NlfGDILSDlaa 267 (376)
...-|+|++.-+ +..-.+++=+.||.+-= =|+|+|++-.=||-++|
T Consensus 142 --~~n~~~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaa 219 (481)
T KOG2666|consen 142 --NHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAA 219 (481)
T ss_pred --hcCCCCceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHH
Confidence 224567766432 23444555556665532 28999999999999986
Q ss_pred hh
Q psy559 268 GL 269 (376)
Q Consensus 268 ~l 269 (376)
.-
T Consensus 220 na 221 (481)
T KOG2666|consen 220 NA 221 (481)
T ss_pred HH
Confidence 53
No 94
>COG0280 Pta Phosphotransacetylase [Energy production and conversion]
Probab=25.38 E-value=4.9e+02 Score=26.40 Aligned_cols=100 Identities=24% Similarity=0.329 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHHHHHHhCCCC-cEEE---EecCCccccchHHHHHHHHHHHhhCC-Ceeee-eeeHHHHHHHHHh----
Q psy559 175 TAANSYRLSKYAFEYAKKFGRK-KVTT---VHKANIMKISDGLFLEISRKVAKEYP-EIEHN-DMIIDNTCMQLVS---- 244 (376)
Q Consensus 175 Tr~~~eRiar~AFe~A~~r~rk-~Vt~---v~KaNvl~~sdglf~~~~~eva~eyP-~I~~e-~~~vD~~~~~Lv~---- 244 (376)
|.++.-.|+..|.+.|++-|-. ||-+ .++.+.--.+-.--++..+-+.+..| |.+++ ++..|++.-.=+.
T Consensus 174 taeeladIa~~sa~~a~~fgi~PkVAlLS~St~gs~~~~~~~kv~ea~~i~~~~~~~dl~vDGelq~DaA~~~~va~~k~ 253 (327)
T COG0280 174 TAEELADIAENAAETARRFGIEPKVALLSYSTFGSGKGPSTDKVREATKILRERAPPDLEVDGELQFDAALVEKVAAKKA 253 (327)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCceEEEEeecCCCCCCccHHHHHHHHHHHHhcCCccceeccCcchhhhcCHHHHHhhC
Confidence 3455556777778888876632 3433 33433221111223333433345677 77764 5557777653322
Q ss_pred --CCC--CccEEecCCcc-hhhHhhhhhhhcCCcc
Q psy559 245 --NPK--QFDVMVMPNLY-GAITSNVICGLIGGAG 274 (376)
Q Consensus 245 --~P~--~fdViV~~Nlf-GDILSDlaa~l~GglG 274 (376)
+|- .=||+|.|||- |+|.--+.--+.|..-
T Consensus 254 p~s~vaG~ANvlVfP~LeagNI~yK~lq~~~~a~a 288 (327)
T COG0280 254 PDSPLAGSANVLVFPDLEAGNIGYKLLQRLGGALA 288 (327)
T ss_pred CCCCcCCCCCEEEcCCchHHHHHHHHHHHhcCCce
Confidence 333 45699999998 9999888877777644
No 95
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=25.17 E-value=2.1e+02 Score=25.28 Aligned_cols=44 Identities=32% Similarity=0.367 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHc-------CCCCCCCC-----CCCCCHHHHHHHHHHHHhhc
Q psy559 325 KHASIIKLAIEKTINE-------DKIHTPDL-----GGTATSIDVVQNIIKLVQTN 368 (376)
Q Consensus 325 ~~A~~I~~AV~~~l~~-------~~~~T~Dl-----gG~~sT~e~~daV~~~l~~~ 368 (376)
+.++-+.+||.++|.+ |++.++.| |-.+|..|+.+.|+.+++..
T Consensus 73 e~Geevy~aV~~Al~E~nEyN~sGry~v~eLWN~ke~RkAtl~E~v~~i~~q~k~~ 128 (132)
T PF03469_consen 73 EWGEEVYNAVTKALLEINEYNPSGRYPVPELWNFKEGRKATLKEVVQYILKQWKTL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCccCCccccccccCHHHHHHHHHHHHHHH
Confidence 4555666666666533 66777777 67899999999999998654
No 96
>KOG0189|consensus
Probab=25.00 E-value=1.7e+02 Score=28.08 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=43.4
Q ss_pred HHHHHhCCC-CcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHH-HHHhCCCCc
Q psy559 187 FEYAKKFGR-KKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCM-QLVSNPKQF 249 (376)
Q Consensus 187 Fe~A~~r~r-k~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~-~Lv~~P~~f 249 (376)
.+|+.+.++ -+|.++|--...+.|-.|| ++|.++|+.|.++.+.-|++.- .++.+-..|
T Consensus 62 id~~~~~~~~~~l~~idT~~~~PeT~~l~----d~VekkY~~i~I~~~~pd~~e~ea~~~~K~~~ 122 (261)
T KOG0189|consen 62 IDMLSKTGRPFRLFFIDTLHHFPETLRLF----DAVEKKYGNIRIHVYFPDAVEVEALFASKGGF 122 (261)
T ss_pred HHHHHHcCCCceeEEeeccccChHHHHHH----HHHHHhcCceEEEEEcchhHHHHHHHHhccch
Confidence 366766654 4788888777776665554 5677889999999999999875 566665555
No 97
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=24.98 E-value=3.6e+02 Score=24.50 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=35.0
Q ss_pred HHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCC-Cee-----eeeeeH---HHHHHHHHhCCCCccEEecC
Q psy559 185 YAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYP-EIE-----HNDMII---DNTCMQLVSNPKQFDVMVMP 255 (376)
Q Consensus 185 ~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP-~I~-----~e~~~v---D~~~~~Lv~~P~~fdViV~~ 255 (376)
.+.++..++|.++|-++.-..-.. +.....+-+++..+++. .+. ...... ..++.++++++.++|+|++.
T Consensus 101 ~~~~~l~~~g~~~i~~i~~~~~~~-~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 179 (261)
T cd06272 101 LAVLYLAEKGHKKIAYIGDLSLDR-RQRKRFKGFLETCDENGISISDSHIDVDGLSAEGGDNAAKKLLKESDLPTAIICG 179 (261)
T ss_pred HHHHHHHHcCchhEEEeecccccc-cHHHHHHHHHHHHHHcCCCCCHHHeeeCCCCHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 344444445777888885332211 22223334444433331 111 111111 13444566666679999998
Q ss_pred Ccc
Q psy559 256 NLY 258 (376)
Q Consensus 256 Nlf 258 (376)
|-.
T Consensus 180 ~d~ 182 (261)
T cd06272 180 SYD 182 (261)
T ss_pred CcH
Confidence 853
No 98
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.62 E-value=4.7e+02 Score=24.41 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCCcEEEEe-cCCccccchHHHHHHHHHHHhhC---CCee-ee-eeeHHH---HHHHHHhCCCCccE
Q psy559 181 RLSKYAFEYAKKFGRKKVTTVH-KANIMKISDGLFLEISRKVAKEY---PEIE-HN-DMIIDN---TCMQLVSNPKQFDV 251 (376)
Q Consensus 181 Riar~AFe~A~~r~rk~Vt~v~-KaNvl~~sdglf~~~~~eva~ey---P~I~-~e-~~~vD~---~~~~Lv~~P~~fdV 251 (376)
..++.|.++-.++|.+++-.+. ..+... . .-+.+-+++..+++ +.+. .. ..-.+. ...+++..+..+|+
T Consensus 104 ~~~~~a~~~L~~~G~~~I~~i~~~~~~~~-~-~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 181 (269)
T cd06287 104 ATARMLLEHLRAQGARQIALIVGSARRNS-Y-LEAEAAYRAFAAEHGMPPVVLRVDEAGGEEAGYAACAQLLAQHPDLDA 181 (269)
T ss_pred HHHHHHHHHHHHcCCCcEEEEeCCccccc-H-HHHHHHHHHHHHHcCCCcceeEecCCCChHHHHHHHHHHHhCCCCCCE
Confidence 4456666666777888887774 333221 1 12233344433333 1111 11 111222 33455555457899
Q ss_pred EecCC
Q psy559 252 MVMPN 256 (376)
Q Consensus 252 iV~~N 256 (376)
|+|.|
T Consensus 182 i~~~~ 186 (269)
T cd06287 182 LCVPV 186 (269)
T ss_pred EEEcC
Confidence 99885
No 99
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=24.59 E-value=2.7e+02 Score=22.93 Aligned_cols=58 Identities=10% Similarity=-0.039 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHH
Q psy559 178 NSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDN 237 (376)
Q Consensus 178 ~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~ 237 (376)
...+-.|-.|.-+.+++++-|...++.+-- .+.....++++++++|+.|++....+|.
T Consensus 6 ~~~~~~~~~~~~~l~~~~~vvv~f~a~wC~--~C~~~~~~l~~la~~~~~i~~~~vd~d~ 63 (113)
T cd02975 6 EDRKALKEEFFKEMKNPVDLVVFSSKEGCQ--YCEVTKQLLEELSELSDKLKLEIYDFDE 63 (113)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEeCCCCCC--ChHHHHHHHHHHHHhcCceEEEEEeCCc
Confidence 344555555555566533323333444432 3578888999999889888887776664
No 100
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=24.34 E-value=4.7e+02 Score=27.55 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=62.8
Q ss_pred hHHHHHHHHhcCeEEEcc--cccCCCCchhhHHHhhhhcccEeecccccc----c--CCCCccEEEEccCCcceeecccc
Q psy559 90 LEYAITSIRRNGVAIKGN--IETGSLDSLWTLKLCRLILRVIAMMILSVR----C--RQQGIDIVIVRQNTEGEYAMLEH 161 (376)
Q Consensus 90 ~~~~~~~~~~~dail~G~--i~~p~~~~~~~~~LR~~~ldLyan~~pg~~----~--~~~~iDivivREnteG~Y~g~e~ 161 (376)
+++..+.+++....+.+. .-.|. ...+..+| +.+.- .|++|-+. + ...+.|.+++ |.|.|.+.
T Consensus 136 ~e~~~~~l~~~G~~fl~~a~~~~PA--dk~v~~lR-~v~~t-~n~lPLi~~SImSKKlAag~~~~vl-----dV~~G~gA 206 (434)
T PRK06078 136 QEDFIKLVNENKVAVIGQSGNLTPA--DKKLYALR-DVTAT-VNSIPLIASSIMSKKIAAGADAIVL-----DVKTGAGA 206 (434)
T ss_pred HHHHHHHHHHhCcEEEccCCCcChh--hhhhHHHh-ccccc-cChHHhhhhHhhhhhhhcCCCeEEE-----eeecCCCC
Confidence 566777778888777763 33332 23477899 87764 45444331 1 1257788777 77777542
Q ss_pred cccCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEec
Q psy559 162 ESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHK 203 (376)
Q Consensus 162 ~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~K 203 (376)
..=|.+..+.+++.=-++.++.|++.+..++.
T Consensus 207 ----------fm~~~~~a~~lA~~l~~lG~~~g~~~~a~lt~ 238 (434)
T PRK06078 207 ----------FMKTVEDAEELAHAMVRIGNNVGRNTMAVISD 238 (434)
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 12367888999999888888888777777764
No 101
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=24.26 E-value=54 Score=33.13 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=16.4
Q ss_pred eeEEEEcCC--CCCHHHHHHHH
Q psy559 44 NAVTMLPGG--GIGPELMSYVK 63 (376)
Q Consensus 44 ~~I~vipGD--GIGpEV~~aa~ 63 (376)
++|++--|| ||||||+-.++
T Consensus 3 ~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 3 KIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CcEEEeCCCCcchHHHHHHHHh
Confidence 568888898 89999987664
No 102
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.89 E-value=4.5e+02 Score=23.71 Aligned_cols=76 Identities=11% Similarity=-0.029 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhC-CCe---ee---eeeeHHHHHHHHHhCCCCccEEe
Q psy559 181 RLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY-PEI---EH---NDMIIDNTCMQLVSNPKQFDVMV 253 (376)
Q Consensus 181 Riar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~ey-P~I---~~---e~~~vD~~~~~Lv~~P~~fdViV 253 (376)
+..+.+.++..++|.++|.++.-. --......+.+-+.+..+++ .++ .. +..-......+++++....|+|+
T Consensus 101 ~~g~~~~~~l~~~g~~~i~~i~~~-~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 179 (266)
T cd06278 101 EAGRLAAELLLAKGCRRIAFIGGP-ADTSTSRERERGFRDALAAAGVPVVVEEAGDYSYEGGYEAARRLLASRPRPDAIF 179 (266)
T ss_pred HHHHHHHHHHHHCCCceEEEEcCC-CcccchHHHHHHHHHHHHHcCCChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 455566677667788899888531 11112223334444433322 111 11 11112234455665444799999
Q ss_pred cCCc
Q psy559 254 MPNL 257 (376)
Q Consensus 254 ~~Nl 257 (376)
+.|-
T Consensus 180 ~~~~ 183 (266)
T cd06278 180 CAND 183 (266)
T ss_pred EcCc
Confidence 8863
No 103
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=23.53 E-value=3.3e+02 Score=24.86 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=32.2
Q ss_pred HHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhh--CCCeeeeeeeHHHHHHHHHhCCCCccEEecCC
Q psy559 186 AFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKE--YPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 186 AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~e--yP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~N 256 (376)
++.+|+.....+||.+|+.--+ .+.+++-.++ .+++++....+.. +-. ++.||+|++..
T Consensus 60 al~la~~~~~~~V~giD~s~~~-------l~~A~~~~~~~~l~~i~~~~~d~~~----~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 60 GIPLAIARPELKVTLVDSLGKK-------IAFLREVAAELGLKNVTVVHGRAEE----FGQ-EEKFDVVTSRA 120 (187)
T ss_pred HHHHHHHCCCCeEEEEeCcHHH-------HHHHHHHHHHcCCCCEEEEeccHhh----CCC-CCCccEEEEcc
Confidence 5556665556789999854433 2333333222 3445544443322 222 56899999854
No 104
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=23.43 E-value=1.2e+02 Score=30.22 Aligned_cols=98 Identities=21% Similarity=0.183 Sum_probs=59.7
Q ss_pred hhhcccccccccchhcccccchhhhhhccCCCC-eeeEEEEcCCCCCHHHHHHHHHHHHHcCC---CeeEEEEEccccCC
Q psy559 10 LAASKVYDKQSVRTMAFVMPKLKEVYTKAKYGG-RNAVTMLPGGGIGPELMSYVKEVFRYAGV---PVDFETVQIDPKSD 85 (376)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~vipGDGIGpEV~~aa~~Vl~a~~~---~ie~~~~~~g~~~~ 85 (376)
|..-+.|+. +-|.++.-|..|--+.--....+ +.-+++-|+|-+=-.+-. .++.+... -=.+..+.+|.+..
T Consensus 69 Le~l~~~t~-~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~---til~ay~~~~~~d~v~~v~VGnEal 144 (305)
T COG5309 69 LELLASYTH-SIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEK---TILSAYLPYNGWDDVTTVTVGNEAL 144 (305)
T ss_pred HHHhccCCc-eEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHH---HHHHHHhccCCCCceEEEEechhhh
Confidence 456677777 88889988888655542222223 677899999965443332 44444422 23345677888875
Q ss_pred CC-CC-hHHHHHHHHhcCeEEE-----cccccC
Q psy559 86 SN-DD-LEYAITSIRRNGVAIK-----GNIETG 111 (376)
Q Consensus 86 ~~-~~-~~~~~~~~~~~dail~-----G~i~~p 111 (376)
.+ .. +++..+-|...+..++ ||+++-
T Consensus 145 ~r~~~tasql~~~I~~vrsav~~agy~gpV~T~ 177 (305)
T COG5309 145 NRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTV 177 (305)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCCCCceeec
Confidence 43 33 4555666655555555 888764
No 105
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=22.95 E-value=55 Score=32.78 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.5
Q ss_pred eEEEEcCC--CCCHHHHHHH
Q psy559 45 AVTMLPGG--GIGPELMSYV 62 (376)
Q Consensus 45 ~I~vipGD--GIGpEV~~aa 62 (376)
+|++--|| ||||||+-.+
T Consensus 3 ~iaiT~GDpaGIGpEii~ka 22 (307)
T PRK03946 3 KIAISIGDINGIGLEIALKS 22 (307)
T ss_pred eEEEcCCCCcccHHHHHHHh
Confidence 68888888 8999998776
No 106
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.92 E-value=2.5e+02 Score=25.62 Aligned_cols=76 Identities=7% Similarity=0.028 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCee-------eeeeeHHHHHHHHHhCCCCccEE
Q psy559 180 YRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIE-------HNDMIIDNTCMQLVSNPKQFDVM 252 (376)
Q Consensus 180 eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~-------~e~~~vD~~~~~Lv~~P~~fdVi 252 (376)
.+..+.|.++-.++|.+++-++.... .. +.....+-+++..+++ ++. .+..-.-....++.+.+...++|
T Consensus 100 ~~~g~~a~~~L~~~g~~~i~~~~~~~-~~-~~~~R~~gf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 176 (263)
T cd06280 100 RAAARTLVEHLVAQGYRRIGGLFGNA-ST-TGAERRAGYEDAMRRH-GLAPDARFVAPTAEAAEAALAAWLAAPERPEAL 176 (263)
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCCC-CC-CHHHHHHHHHHHHHHc-CCCCChhhcccCHHHHHHHHHHHhcCCCCCcEE
Confidence 34666777777777878888764322 11 2222333344433322 111 11111122456666666678999
Q ss_pred ecCCcc
Q psy559 253 VMPNLY 258 (376)
Q Consensus 253 V~~Nlf 258 (376)
++.|-.
T Consensus 177 ~~~~d~ 182 (263)
T cd06280 177 VASNGL 182 (263)
T ss_pred EECCcH
Confidence 996643
No 107
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.45 E-value=4.9e+02 Score=23.52 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEe-cCCccccchHHHHHHHHHHHhhCC-Ceee-----eeeeHH---HHHHHHHhCCCCcc
Q psy559 181 RLSKYAFEYAKKFGRKKVTTVH-KANIMKISDGLFLEISRKVAKEYP-EIEH-----NDMIID---NTCMQLVSNPKQFD 250 (376)
Q Consensus 181 Riar~AFe~A~~r~rk~Vt~v~-KaNvl~~sdglf~~~~~eva~eyP-~I~~-----e~~~vD---~~~~~Lv~~P~~fd 250 (376)
..++.|.++..++|.++|-++. ..+.. ....+.+-+.+..+++. ++.. ...-.+ ....+++.+...+|
T Consensus 102 ~~~~~a~~~l~~~g~~~i~~l~~~~~~~--~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (269)
T cd06288 102 QGGYDATRHLLAAGHRRIAFINGEPWML--AAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPT 179 (269)
T ss_pred HHHHHHHHHHHHcCCceEEEEeCCccch--hHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCC
Confidence 4456666666666788888884 33321 22334455555555542 2111 111111 33345555444799
Q ss_pred EEecCCc
Q psy559 251 VMVMPNL 257 (376)
Q Consensus 251 ViV~~Nl 257 (376)
+|++.|-
T Consensus 180 ai~~~~d 186 (269)
T cd06288 180 AIFCGND 186 (269)
T ss_pred EEEEeCc
Confidence 9888763
No 108
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=22.36 E-value=5.6e+02 Score=23.15 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhC-CCe-----eeeeeeHH---HHHHHHHhCCCCccE
Q psy559 181 RLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY-PEI-----EHNDMIID---NTCMQLVSNPKQFDV 251 (376)
Q Consensus 181 Riar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~ey-P~I-----~~e~~~vD---~~~~~Lv~~P~~fdV 251 (376)
+..+.|.++..++|.+++.++.-..-. .+.....+-+++..+++ ..+ .......| ..+.+++.....+|+
T Consensus 104 ~~g~~a~~~l~~~g~~~i~~i~~~~~~-~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (270)
T cd01545 104 AAAREMTRHLIDLGHRRIAFIAGPPDH-RASAERLEGYRDALAEAGLPLDPELVAQGDFTFESGLEAAEALLALPDRPTA 182 (270)
T ss_pred HHHHHHHHHHHHCCCceEEEEeCCCCc-hhHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHhCCCCCCE
Confidence 445566666666778888888622211 11111122344443332 111 11111122 344566665557899
Q ss_pred EecCC
Q psy559 252 MVMPN 256 (376)
Q Consensus 252 iV~~N 256 (376)
|++.|
T Consensus 183 i~~~~ 187 (270)
T cd01545 183 IFASN 187 (270)
T ss_pred EEEcC
Confidence 99876
No 109
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=22.31 E-value=66 Score=32.61 Aligned_cols=20 Identities=40% Similarity=0.840 Sum_probs=16.6
Q ss_pred eeEEEEcCC--CCCHHHHHHHH
Q psy559 44 NAVTMLPGG--GIGPELMSYVK 63 (376)
Q Consensus 44 ~~I~vipGD--GIGpEV~~aa~ 63 (376)
.+|++--|| ||||||+-.++
T Consensus 5 p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 5 PRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CcEEEeCCCCcccHHHHHHHHH
Confidence 478888998 89999987664
No 110
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=21.88 E-value=2.1e+02 Score=23.96 Aligned_cols=56 Identities=7% Similarity=0.207 Sum_probs=35.6
Q ss_pred eeEEEEcCCCCCHHHHH-HHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHHhcCeEEEcc
Q psy559 44 NAVTMLPGGGIGPELMS-YVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGN 107 (376)
Q Consensus 44 ~~I~vipGDGIGpEV~~-aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~~dail~G~ 107 (376)
++|.++=|.|++..++. ...++++.-|++++++....+... ......++|++|.||
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~--------~~~~~~~~DvIll~P 58 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGE--------KAIAAAEYDLYLVSP 58 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHH--------HhhccCCCCEEEECh
Confidence 47899999999888554 345556666888777655543210 000113589999887
No 111
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=21.87 E-value=2.8e+02 Score=27.86 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=54.0
Q ss_pred hHHHHHHHHhcCeEEEcccccCCC------C-chhhHHHhhhhcccEee-ccccc---------------c-------cC
Q psy559 90 LEYAITSIRRNGVAIKGNIETGSL------D-SLWTLKLCRLILRVIAM-MILSV---------------R-------CR 139 (376)
Q Consensus 90 ~~~~~~~~~~~dail~G~i~~p~~------~-~~~~~~LR~~~ldLyan-~~pg~---------------~-------~~ 139 (376)
.++++++|+++|.|++||- .|.- . +...-+|+ +.-=.|.. .+-|. + ..
T Consensus 176 ~p~vl~AI~~AD~IiiGPg-np~TSI~P~L~v~gi~eAL~-~a~vV~Vsp~Ig~~~v~GPA~~lm~a~g~e~s~~gva~~ 253 (303)
T PRK13606 176 APGVLEAIEEADAVIIGPS-NPVTSIGPILAVPGIREALT-EAPVVAVSPIIGGAPVSGPAAKLMAAIGVEVSAAGVAEH 253 (303)
T ss_pred CHHHHHHHHhCCEEEECCC-ccHHhhchhccchhHHHHHh-CCCEEEEcCCCCCCcCCChhHHHHHHcCCcchHHHHHHh
Confidence 5789999999999999995 3311 0 11111233 44444443 11111 1 11
Q ss_pred CC-CccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHH
Q psy559 140 QQ-GIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAK 191 (376)
Q Consensus 140 ~~-~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~ 191 (376)
|+ =+|.+|+-+-.... +.....-...++..-+.+..+|+||+..+++.
T Consensus 254 Y~~~~D~~vid~~D~~~----~~~g~~v~~~~t~m~~~~~~~~la~~~l~~~~ 302 (303)
T PRK13606 254 YGDLLDGFVIDEADAAI----EVPGVEVLRTDTLMTDPEDTARLARAILELAG 302 (303)
T ss_pred ccccceEEEECCCcccc----ccCCceEEEeccCCCCHHHHHHHHHHHHHHhc
Confidence 32 36877775543322 00000113456777788999999999998874
No 112
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=21.82 E-value=6.5e+02 Score=23.34 Aligned_cols=62 Identities=5% Similarity=-0.093 Sum_probs=31.2
Q ss_pred CCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeee-----eHH---HHHHHHHhCCCCccEEecCC
Q psy559 193 FGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDM-----IID---NTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 193 r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~-----~vD---~~~~~Lv~~P~~fdViV~~N 256 (376)
+|.+++-++.-..-. +...-.+-+++..+++|+++.... -.+ ..+.++++...++|.|++.|
T Consensus 129 ~g~~~i~~l~~~~~~--~~~~R~~gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~n 198 (280)
T cd06303 129 PNHARYAMLYFSPGY--ISTARGDTFIDCVHARNNWTLTSEFYTDATRQKAYQATSDILSNNPDVDFIYACS 198 (280)
T ss_pred CCCcEEEEEECCCCc--chhHHHHHHHHHHHhCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 566777777422111 111122345555556666543221 111 23445666545789999877
No 113
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=20.40 E-value=5.7e+02 Score=23.10 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEccccc
Q psy559 56 PELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIET 110 (376)
Q Consensus 56 pEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~ 110 (376)
.++.....+.++..+..+.+.... . .+.....+.++.+ .+.|+++..+...
T Consensus 15 ~~~~~gi~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~~~~vdgiii~~~~~ 67 (264)
T cd01574 15 SSTLAAIESAAREAGYAVTLSMLA--E--ADEEALRAAVRRLLAQRVDGVIVNAPLD 67 (264)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCC--C--CchHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 456667777777666555543211 1 1111122334444 3588888766533
No 114
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=20.34 E-value=2.4e+02 Score=22.88 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=39.2
Q ss_pred eeEEEEcCCCCCHHHH--HHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHHhcCeEEEcc
Q psy559 44 NAVTMLPGGGIGPELM--SYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGN 107 (376)
Q Consensus 44 ~~I~vipGDGIGpEV~--~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~~dail~G~ 107 (376)
++|.+.=|.|+|-..+ ....++++.-|++++++..+++.. -..+.++|+++.++
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~----------~~~~~~~D~iv~t~ 58 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEI----------ETYMDGVHLICTTA 58 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHH----------hhhcCCCCEEEECC
Confidence 5799999999999987 455588888899888876555431 11235678887665
No 115
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=20.33 E-value=75 Score=32.24 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.0
Q ss_pred eEEEEcCC--CCCHHHHHHHH
Q psy559 45 AVTMLPGG--GIGPELMSYVK 63 (376)
Q Consensus 45 ~I~vipGD--GIGpEV~~aa~ 63 (376)
+|++-.|| ||||||+-.++
T Consensus 5 ~iaIT~GDpaGIGpEii~ka~ 25 (336)
T PRK05312 5 PLALSLGDPAGIGPEIALKAW 25 (336)
T ss_pred eEEEeCCCCcchHHHHHHHHH
Confidence 78899998 89999987654
No 116
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=20.18 E-value=8.3e+02 Score=23.95 Aligned_cols=98 Identities=10% Similarity=0.174 Sum_probs=55.8
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CcEEEEecCCccccchHHHHHHHHHH----HhhCCCeeee-eeeHHHHHHH------
Q psy559 175 TAANSYRLSKYAFEYAKKFGR--KKVTTVHKANIMKISDGLFLEISRKV----AKEYPEIEHN-DMIIDNTCMQ------ 241 (376)
Q Consensus 175 Tr~~~eRiar~AFe~A~~r~r--k~Vt~v~KaNvl~~sdglf~~~~~ev----a~eyP~I~~e-~~~vD~~~~~------ 241 (376)
|.+....|+..|-+||+.-|. -||-+..=.+--......-++.++-. ..++|+..+| ++..|++.-.
T Consensus 145 ~~e~l~~ia~~a~~~ar~lGie~PrVAlLs~g~e~~kg~~~~~eA~~L~~~~~~~~~~~~~vdG~l~~D~A~~~~~a~~k 224 (294)
T TIGR02706 145 ELKDKVQIINNAVKVAHAIGIDVPKVAPLAAVEVVNPKMPATVDAAALAKMSDRGQIKGCIVDGPLALDNAISEEAAKHK 224 (294)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCcccCCCCChHHHHHHHHHHHHhcCCCCCeEEEechHHHHhcCHHHHHHh
Confidence 445566777888899997653 35555422111111122333333221 2345787774 4557877322
Q ss_pred HHhCC--CCccEEecCCcc-hhhHhhhhhhhcCC
Q psy559 242 LVSNP--KQFDVMVMPNLY-GAITSNVICGLIGG 272 (376)
Q Consensus 242 Lv~~P--~~fdViV~~Nlf-GDILSDlaa~l~Gg 272 (376)
-..+| ++.||+|.||+- |+|+--+..-+.|+
T Consensus 225 ~~~s~v~g~Anvli~P~l~agNi~~K~~~~~~~~ 258 (294)
T TIGR02706 225 GIEGEVAGKADILLVPDIEAGNVLYKTLTYFAKS 258 (294)
T ss_pred CCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcCC
Confidence 22222 367899999998 99988777666543
No 117
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.14 E-value=5.1e+02 Score=23.61 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=13.1
Q ss_pred HHHHHHhCCCCccEEecCC
Q psy559 238 TCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 238 ~~~~Lv~~P~~fdViV~~N 256 (376)
.+.++++....+|.|++.|
T Consensus 167 ~~~~~l~~~~~~~ai~~~~ 185 (269)
T cd06293 167 AAAQLLARGDPPTAIFAAS 185 (269)
T ss_pred HHHHHHcCCCCCCEEEEcC
Confidence 3455655444699999997
No 118
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=20.14 E-value=8.1e+02 Score=24.56 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCCcEEEEecC-----CccccchHHHH------------HHHHHHHhhCCCeeeeeeeHH---HHHHHHHh
Q psy559 185 YAFEYAKKFGRKKVTTVHKA-----NIMKISDGLFL------------EISRKVAKEYPEIEHNDMIID---NTCMQLVS 244 (376)
Q Consensus 185 ~AFe~A~~r~rk~Vt~v~Ka-----Nvl~~sdglf~------------~~~~eva~eyP~I~~e~~~vD---~~~~~Lv~ 244 (376)
.|..+|+. |-++|+++|.- |+-+.. +|. ...+.+.+-.|+|+++....| .-...++
T Consensus 39 va~~La~a-Gvg~i~lvD~D~Ve~sNL~RQ~--l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~- 114 (339)
T PRK07688 39 NAEMLVRA-GVGKVTIVDRDYVEWSNLQRQQ--LYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEELEELV- 114 (339)
T ss_pred HHHHHHHc-CCCeEEEEeCCccCHHHcCccc--cccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHH-
Confidence 34455655 78899999984 333321 221 112334445688877665432 1223444
Q ss_pred CCCCccEEecC--Ccchh-hHhhhhh
Q psy559 245 NPKQFDVMVMP--NLYGA-ITSNVIC 267 (376)
Q Consensus 245 ~P~~fdViV~~--NlfGD-ILSDlaa 267 (376)
..||+||.. |.--- +|+|.|.
T Consensus 115 --~~~DlVid~~Dn~~~r~~ln~~~~ 138 (339)
T PRK07688 115 --TGVDLIIDATDNFETRFIVNDAAQ 138 (339)
T ss_pred --cCCCEEEEcCCCHHHHHHHHHHHH
Confidence 358966643 44322 3555553
Done!