Query psy559
Match_columns 376
No_of_seqs 150 out of 1336
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:25:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x0l_A Homoisocitrate dehydrog 100.0 9E-111 3E-115 825.6 30.4 320 43-367 1-332 (333)
2 3blx_A Isocitrate dehydrogenas 100.0 2E-110 5E-115 827.8 29.5 328 37-367 11-348 (349)
3 3blx_B Isocitrate dehydrogenas 100.0 5E-110 2E-114 825.9 29.2 325 38-365 16-354 (354)
4 3ty4_A Probable homoisocitrate 100.0 3E-109 1E-113 822.1 29.4 323 40-366 7-365 (366)
5 3flk_A Tartrate dehydrogenase/ 100.0 3E-109 9E-114 823.7 27.9 324 42-368 4-363 (364)
6 3udu_A 3-isopropylmalate dehyd 100.0 2E-108 6E-113 815.6 29.7 322 41-368 4-358 (361)
7 2y3z_A 3-isopropylmalate dehyd 100.0 2E-108 7E-113 815.5 28.3 326 43-374 3-356 (359)
8 3u1h_A 3-isopropylmalate dehyd 100.0 1E-107 4E-112 814.6 31.0 319 43-366 23-377 (390)
9 1vlc_A 3-isopropylmalate dehyd 100.0 1E-107 5E-112 810.5 26.8 320 42-367 11-364 (366)
10 1wpw_A 3-isopropylmalate dehyd 100.0 2E-107 8E-112 802.0 27.3 315 44-365 2-335 (336)
11 3vmk_A 3-isopropylmalate dehyd 100.0 6E-107 2E-111 808.3 28.2 322 41-367 11-373 (375)
12 2d1c_A Isocitrate dehydrogenas 100.0 2E-106 7E-111 824.0 30.8 324 42-367 18-357 (496)
13 1cnz_A IPMDH, IMDH, protein (3 100.0 2E-106 5E-111 803.9 27.8 321 42-367 3-361 (363)
14 3r8w_A 3-isopropylmalate dehyd 100.0 4E-106 1E-110 808.2 26.1 322 41-367 40-399 (405)
15 1w0d_A 3-isopropylmalate dehyd 100.0 8E-106 3E-110 791.9 27.7 312 44-365 2-337 (337)
16 3dms_A Isocitrate dehydrogenas 100.0 1E-105 5E-110 811.0 27.4 322 42-366 35-427 (427)
17 1a05_A IPMDH, IMDH, 3-isopropy 100.0 2E-105 5E-110 796.0 26.8 320 44-368 2-357 (358)
18 2e0c_A 409AA long hypothetical 100.0 3E-105 1E-109 805.5 27.9 322 42-366 23-407 (409)
19 2iv0_A Isocitrate dehydrogenas 100.0 3E-105 9E-110 806.0 27.1 322 42-366 26-410 (412)
20 1tyo_A Isocitrate dehydrogenas 100.0 2E-104 8E-109 803.3 27.2 327 42-372 34-428 (435)
21 2d4v_A Isocitrate dehydrogenas 100.0 8E-104 3E-108 798.1 29.0 321 42-365 25-429 (429)
22 1hqs_A Isocitrate dehydrogenas 100.0 5E-104 2E-108 798.9 25.3 322 42-366 18-423 (423)
23 3us8_A Isocitrate dehydrogenas 100.0 9.3E-99 3E-103 761.3 23.4 320 43-368 30-424 (427)
24 2uxq_A Isocitrate dehydrogenas 100.0 5.1E-98 2E-102 752.6 23.9 320 43-367 6-399 (402)
25 1lwd_A Isocitrate dehydrogenas 100.0 4E-96 1E-100 741.1 24.0 321 43-368 8-409 (413)
26 1zor_A Isocitrate dehydrogenas 100.0 2.6E-95 9E-100 732.7 25.5 320 43-367 7-397 (399)
27 4aoy_A Isocitrate dehydrogenas 100.0 1.6E-94 5.5E-99 725.5 22.9 321 43-368 7-401 (402)
28 2qfy_A Isocitrate dehydrogenas 100.0 1.8E-93 6E-98 724.1 20.8 319 43-367 22-421 (427)
29 2b0t_A NADP isocitrate dehydro 97.3 0.0074 2.5E-07 62.5 16.4 188 160-350 443-649 (738)
30 1itw_A Isocitrate dehydrogenas 97.3 0.0073 2.5E-07 62.6 16.3 188 160-350 447-653 (741)
31 3lxy_A 4-hydroxythreonine-4-ph 96.4 0.017 6E-07 56.6 11.1 133 172-318 178-326 (334)
32 2hi1_A 4-hydroxythreonine-4-ph 94.3 0.035 1.2E-06 54.3 4.8 133 172-318 180-327 (330)
33 4aty_A Terephthalate 1,2-CIS-d 92.4 0.072 2.4E-06 52.4 3.4 131 172-319 195-340 (349)
34 1yxo_A 4-hydroxythreonine-4-ph 92.1 0.078 2.7E-06 51.8 3.3 133 172-318 173-321 (328)
35 3tsn_A 4-hydroxythreonine-4-ph 89.7 0.19 6.6E-06 49.7 3.5 77 233-318 282-361 (367)
36 1vi1_A Fatty acid/phospholipid 87.1 4.1 0.00014 39.7 11.0 133 174-319 148-314 (345)
37 3cis_A Uncharacterized protein 83.3 27 0.00093 31.9 17.5 89 91-203 114-207 (309)
38 2af4_C Phosphate acetyltransfe 81.2 7.6 0.00026 37.4 10.0 98 173-270 177-289 (333)
39 1u7n_A Fatty acid/phospholipid 80.6 9.4 0.00032 36.9 10.4 133 174-319 150-317 (336)
40 1td9_A Phosphate acetyltransfe 77.8 11 0.00038 36.1 9.9 99 173-271 178-290 (329)
41 3l6u_A ABC-type sugar transpor 76.5 41 0.0014 29.9 15.7 183 41-257 6-204 (293)
42 1vmi_A Putative phosphate acet 76.0 13 0.00046 36.1 10.0 99 173-271 184-297 (355)
43 1r5j_A Putative phosphotransac 73.8 21 0.00072 34.2 10.7 100 173-272 182-295 (337)
44 1yco_A Branched-chain phosphot 70.3 39 0.0013 31.7 11.4 222 44-298 2-259 (279)
45 3m9w_A D-xylose-binding peripl 68.9 66 0.0023 28.9 15.7 177 42-256 1-196 (313)
46 3l49_A ABC sugar (ribose) tran 68.4 13 0.00044 33.2 7.4 175 42-256 4-199 (291)
47 1e2b_A Enzyme IIB-cellobiose; 65.9 27 0.00091 27.9 8.0 56 43-108 3-59 (106)
48 3uf6_A LMO1369 protein; struct 60.7 49 0.0017 31.3 10.1 199 40-271 15-252 (291)
49 3ksm_A ABC-type sugar transpor 57.4 36 0.0012 29.8 8.1 75 182-257 110-196 (276)
50 3gv0_A Transcriptional regulat 52.9 1.2E+02 0.0042 26.8 14.8 75 181-256 113-196 (288)
51 2rjo_A Twin-arginine transloca 47.5 65 0.0022 29.4 8.5 74 182-256 121-205 (332)
52 3nbm_A PTS system, lactose-spe 47.2 43 0.0015 26.9 6.2 58 41-108 4-62 (108)
53 4aty_A Terephthalate 1,2-CIS-d 45.5 11 0.00038 36.7 2.9 23 41-63 6-30 (349)
54 2fn9_A Ribose ABC transporter, 44.9 71 0.0024 28.2 8.1 80 175-256 107-199 (290)
55 4hc4_A Protein arginine N-meth 44.8 19 0.00065 35.3 4.5 59 190-262 101-162 (376)
56 2zqe_A MUTS2 protein; alpha/be 44.6 59 0.002 24.8 6.4 57 168-229 6-62 (83)
57 3miz_A Putative transcriptiona 43.6 80 0.0027 28.2 8.3 175 41-256 11-205 (301)
58 4e4r_A Phosphate acetyltransfe 41.5 83 0.0029 30.2 8.4 99 175-273 177-293 (331)
59 3o74_A Fructose transport syst 39.6 68 0.0023 27.9 7.0 173 43-256 2-188 (272)
60 2x7x_A Sensor protein; transfe 38.7 1E+02 0.0036 27.9 8.4 75 183-258 114-198 (325)
61 2q62_A ARSH; alpha/beta, flavo 38.4 1E+02 0.0035 28.0 8.2 66 40-107 31-106 (247)
62 2fhp_A Methylase, putative; al 36.5 1.4E+02 0.0048 24.3 8.2 64 188-259 61-127 (187)
63 4azs_A Methyltransferase WBDD; 36.3 70 0.0024 32.6 7.3 65 186-259 81-145 (569)
64 3olq_A Universal stress protei 35.8 2.4E+02 0.0083 25.3 12.6 102 70-203 86-201 (319)
65 3dlo_A Universal stress protei 35.0 40 0.0014 27.7 4.4 26 177-203 36-61 (155)
66 1tjy_A Sugar transport protein 34.5 2E+02 0.007 25.9 9.7 75 182-257 112-198 (316)
67 3d8u_A PURR transcriptional re 34.3 1.7E+02 0.0058 25.3 8.8 75 181-256 106-189 (275)
68 3mt0_A Uncharacterized protein 34.0 2.5E+02 0.0086 24.9 13.5 118 53-203 47-177 (290)
69 3tb6_A Arabinose metabolism tr 33.8 1.2E+02 0.0039 26.7 7.6 175 43-256 15-209 (298)
70 3quf_A Extracellular solute-bi 33.3 98 0.0034 29.0 7.4 58 195-257 29-92 (414)
71 3jy6_A Transcriptional regulat 32.8 63 0.0022 28.5 5.7 175 41-257 5-190 (276)
72 2ioy_A Periplasmic sugar-bindi 32.4 2.1E+02 0.0072 25.1 9.2 73 182-256 108-191 (283)
73 3k4h_A Putative transcriptiona 32.1 2.6E+02 0.0087 24.4 9.7 176 41-256 6-200 (292)
74 1gud_A ALBP, D-allose-binding 31.3 2E+02 0.007 25.3 8.9 72 183-256 118-201 (288)
75 3d02_A Putative LACI-type tran 31.2 1.3E+02 0.0044 26.6 7.6 74 181-256 111-197 (303)
76 1tvm_A PTS system, galactitol- 30.9 1.2E+02 0.004 24.2 6.4 59 40-108 18-78 (113)
77 2h3h_A Sugar ABC transporter, 30.7 2.3E+02 0.0079 25.2 9.3 74 182-257 108-191 (313)
78 3lxy_A 4-hydroxythreonine-4-ph 30.3 26 0.0009 34.0 2.8 21 42-62 7-29 (334)
79 3i3v_A Probable secreted solut 30.2 1.2E+02 0.0041 28.3 7.4 62 194-255 6-71 (405)
80 3k01_A Acarbose/maltose bindin 29.8 67 0.0023 30.3 5.6 60 195-256 27-92 (412)
81 3idf_A USP-like protein; unive 29.3 1.9E+02 0.0066 22.2 7.6 28 177-205 12-40 (138)
82 3egc_A Putative ribose operon 28.6 3E+02 0.01 24.1 17.1 175 41-256 6-194 (291)
83 1dbq_A Purine repressor; trans 27.6 2.7E+02 0.0094 24.2 9.1 74 182-256 113-195 (289)
84 3k9c_A Transcriptional regulat 26.8 2.5E+02 0.0084 24.8 8.6 171 41-256 10-193 (289)
85 3g1w_A Sugar ABC transporter; 26.1 2.5E+02 0.0086 24.7 8.6 179 42-258 3-197 (305)
86 3kuu_A Phosphoribosylaminoimid 25.5 2.2E+02 0.0077 25.0 7.6 65 40-110 9-78 (174)
87 3brs_A Periplasmic binding pro 25.4 1.8E+02 0.006 25.5 7.3 75 181-256 115-198 (289)
88 3qk7_A Transcriptional regulat 24.4 2.1E+02 0.0072 25.3 7.7 174 41-256 4-195 (294)
89 3tsn_A 4-hydroxythreonine-4-ph 24.4 39 0.0013 33.3 2.8 20 43-62 4-25 (367)
90 3brq_A HTH-type transcriptiona 24.3 3.5E+02 0.012 23.4 9.1 175 41-256 17-208 (296)
91 3uug_A Multiple sugar-binding 23.7 3.9E+02 0.013 23.7 16.2 182 42-256 2-212 (330)
92 3g85_A Transcriptional regulat 23.5 3.3E+02 0.011 23.7 8.8 174 41-257 9-197 (289)
93 3qd7_X Uncharacterized protein 23.4 2.5E+02 0.0084 23.4 7.3 62 168-229 49-111 (137)
94 3bvr_A NOTI restriction endonu 22.8 21 0.00072 34.4 0.5 32 244-275 71-105 (383)
95 3bbl_A Regulatory protein of L 22.8 2.6E+02 0.009 24.5 8.0 172 42-256 3-196 (287)
96 1elj_A Maltodextrin-binding pr 22.7 80 0.0027 29.4 4.6 44 212-255 20-66 (381)
97 3dbi_A Sugar-binding transcrip 22.7 3.1E+02 0.01 24.8 8.6 175 42-256 60-250 (338)
98 3uor_A ABC transporter sugar b 22.4 1.2E+02 0.004 29.3 5.9 58 195-256 29-91 (458)
99 3gyb_A Transcriptional regulat 22.0 2.8E+02 0.0096 24.0 7.9 73 181-256 104-184 (280)
100 3ab8_A Putative uncharacterize 21.8 3.9E+02 0.013 23.1 15.8 100 68-203 85-190 (268)
101 3cfx_A UPF0100 protein MA_0280 21.3 1.8E+02 0.0062 26.2 6.7 47 212-258 17-65 (296)
102 2fep_A Catabolite control prot 21.3 2.1E+02 0.0072 25.2 7.0 74 182-257 120-204 (289)
103 4b4k_A N5-carboxyaminoimidazol 21.2 2.3E+02 0.0079 25.0 6.9 61 44-110 23-88 (181)
104 3rot_A ABC sugar transporter, 21.1 4.2E+02 0.014 23.2 9.5 180 42-256 2-196 (297)
105 3cis_A Uncharacterized protein 21.0 3.2E+02 0.011 24.5 8.3 25 177-202 30-54 (309)
106 3lp6_A Phosphoribosylaminoimid 20.8 2.5E+02 0.0084 24.7 7.0 62 43-110 7-73 (174)
107 2hi1_A 4-hydroxythreonine-4-ph 20.8 49 0.0017 32.0 2.7 17 46-62 9-27 (330)
108 3kke_A LACI family transcripti 20.8 3.5E+02 0.012 23.9 8.4 173 41-256 13-205 (303)
109 2b3f_A Glucose-binding protein 20.8 1.2E+02 0.0042 28.3 5.6 45 211-255 14-66 (400)
110 3e3m_A Transcriptional regulat 20.6 2.8E+02 0.0096 25.4 8.0 175 42-256 69-258 (355)
111 3evi_A Phosducin-like protein 20.5 62 0.0021 25.8 2.9 53 197-256 24-76 (118)
112 1yxo_A 4-hydroxythreonine-4-ph 20.5 45 0.0016 32.3 2.3 18 45-62 4-23 (328)
113 2l2q_A PTS system, cellobiose- 20.3 2.4E+02 0.0081 22.0 6.3 56 43-108 4-60 (109)
114 3l4e_A Uncharacterized peptida 20.2 2.2E+02 0.0077 25.0 6.8 57 44-107 28-87 (206)
115 1taf_B TFIID TBP associated fa 20.1 70 0.0024 24.0 2.8 26 176-201 37-62 (70)
No 1
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=8.9e-111 Score=825.59 Aligned_cols=320 Identities=32% Similarity=0.497 Sum_probs=306.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCC---CChHHHHHHHHhcCeEEEcccccCCCC----c
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSN---DDLEYAITSIRRNGVAIKGNIETGSLD----S 115 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~---~~~~~~~~~~~~~dail~G~i~~p~~~----~ 115 (376)
.++|++|||||||||||+++++||++++++++|+++++|.+++++ ..|++++++|+++|++||||+++|.++ +
T Consensus 1 ~~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~~~~~ 80 (333)
T 1x0l_A 1 AYRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKVPGFF 80 (333)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCCTTCC
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCCcCcc
Confidence 379999999999999999999999999999999999999988754 349999999999999999999999632 4
Q ss_pred hhhHHHhhhhcccEee-----cccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHH
Q psy559 116 LWTLKLCRLILRVIAM-----MILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYA 190 (376)
Q Consensus 116 ~~~~~LR~~~ldLyan-----~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A 190 (376)
+.+++|| |+|||||| ++| ++++++++|+|||||||||+|+|.+++ .+++++++++|||+++|||+|+||+||
T Consensus 81 s~~l~lR-~~ldlyan~RP~~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~-~~~~a~~~~~~T~~~~eRiar~AF~~A 157 (333)
T 1x0l_A 81 GAIRYLR-RRLDLYANVRPAKSRP-VPGSRPGVDLVIVRENTEGLYVEQERR-YLDVAIADAVISKKASERIGRAALRIA 157 (333)
T ss_dssp CHHHHHH-HHTTCCEEEEEEECCS-STTCCSSCEEEEEEECGGGTCCCCEEE-ETTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ChhHHHH-HHcCCEEEEEEEeecc-CCCCCCCCCEEEEecCccceecccccc-CCCeEEEEEEecHHHHHHHHHHHHHHH
Confidence 5699999 99999999 789 999999999999999999999999877 578999999999999999999999999
Q ss_pred HhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhc
Q psy559 191 KKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLI 270 (376)
Q Consensus 191 ~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~ 270 (376)
++|+|||||+|||+|||++|||||+++|+||+++||+|+++|++||++|||||++|++||||||+|||||||||++|+++
T Consensus 158 ~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva~eyp~I~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~ 237 (333)
T 1x0l_A 158 EGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLV 237 (333)
T ss_dssp HTSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHT
T ss_pred HhcCCCeEEEEecCccchhhhHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhc
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q psy559 271 GGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGG 350 (376)
Q Consensus 271 GglGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~DlgG 350 (376)
||+||+||+|+|++.+|||| +|||||||||||+|||+|+|||++|||+|||++++|++|++||.+++++| ++|+||||
T Consensus 238 GslGl~psanig~~~a~fEp-~HGSAPdiaGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g-~~T~DlgG 315 (333)
T 1x0l_A 238 GGLGLAPSGNIGDTTAVFEP-VHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDLVLERG-PRTPDLGG 315 (333)
T ss_dssp TCSTTCEEEEECSSCEEEEE-SSCCCGGGTTSSCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-CCCGGGTC
T ss_pred CCcccceeeEECCCceEEeC-CCCChhhhcCCCCcCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcC-CccCccCC
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999987 99999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy559 351 TATSIDVVQNIIKLVQT 367 (376)
Q Consensus 351 ~~sT~e~~daV~~~l~~ 367 (376)
++||+||+|+|+++|+.
T Consensus 316 ~~~T~e~~daV~~~l~~ 332 (333)
T 1x0l_A 316 DATTEAFTEAVVEALKS 332 (333)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999999954
No 2
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=1.6e-110 Score=827.76 Aligned_cols=328 Identities=44% Similarity=0.756 Sum_probs=309.3
Q ss_pred ccCCCCeeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHHhcCeEEEcccccCCC---
Q psy559 37 KAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNIETGSL--- 113 (376)
Q Consensus 37 ~~~~~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~~dail~G~i~~p~~--- 113 (376)
+++|+++++|++|||||||||||+++++||++++++++|+++++|. ..+...|++++++|+++|++||||+++|..
T Consensus 11 ~~~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~-~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~~ 89 (349)
T 3blx_A 11 PKKYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQ-TDHKEGVYEAVESLKRNKIGLKGLWHTPADQTG 89 (349)
T ss_dssp --CCCCCEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSS-TTCHHHHHHHHHHHHHHSEEEEEECCSHHHHHT
T ss_pred ccccCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecCc-ccCCcCcHHHHHHHHHCCEEEECCccCCCCCCC
Confidence 5678999999999999999999999999999999999999999998 222223899999999999999999999843
Q ss_pred CchhhHHHhhhhcccEee-----cccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHH
Q psy559 114 DSLWTLKLCRLILRVIAM-----MILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFE 188 (376)
Q Consensus 114 ~~~~~~~LR~~~ldLyan-----~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe 188 (376)
.++.++.|| |+|||||| ++||++++++++|||||||||||+|+|.+++..+++++++++|||+++|||+|+||+
T Consensus 90 ~~s~~l~lR-~~ldlyan~RP~~~~pg~~~~~~~vD~vivREnteg~Y~g~e~~~~~gva~~~~~~T~~~~eRiar~AF~ 168 (349)
T 3blx_A 90 HGSLNVALR-KQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKTERIARFAFD 168 (349)
T ss_dssp CHHHHHHHH-HTSCEEEEEEEEECCTTCCCSSCSCEEEEEEECSSGGGGCEEEECSTTEEEEEEEEEHHHHHHHHHHHHH
T ss_pred ccCchHHHH-HHcCCEEEEEEEeccCCCCCCCCCcCEEEEecCCCCcEeCCceeccCCeEEEEEEeCHHHHHHHHHHHHH
Confidence 245699999 99999999 889999999999999999999999999998777889999999999999999999999
Q ss_pred HHHhCCCCcEEEEecCCccccchHHHHHHHHHHH-hhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhh
Q psy559 189 YAKKFGRKKVTTVHKANIMKISDGLFLEISRKVA-KEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVIC 267 (376)
Q Consensus 189 ~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva-~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa 267 (376)
||++|+|||||+|||+|||++|||||+++|+||+ ++||+|+++|+|||+++||||++|++||||||+|||||||||++|
T Consensus 169 ~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~eyp~i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGDIlSD~aa 248 (349)
T 3blx_A 169 FAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGA 248 (349)
T ss_dssp HHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHH
T ss_pred HHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhCCCeeEEEeeHHHHHHHHhhCcccccEEEECCcchHHHHHHHH
Confidence 9999988999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhcCCcccccccccCCCceeeccCCC-CccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCC
Q psy559 268 GLIGGAGLISGKNYGDHYAVFEPGTR-NTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTP 346 (376)
Q Consensus 268 ~l~GglGl~psanig~~~a~FEp~~H-GsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~ 346 (376)
+++||+||+||+|+|++.+|||| +| ||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++|+++|+
T Consensus 249 ~l~GslGl~pSanig~~~a~fEp-vH~GSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~G~~~T~ 327 (349)
T 3blx_A 249 ALIGGPGLVAGANFGRDYAVFEP-GSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRISKAVHETIAEGKHTTR 327 (349)
T ss_dssp HHHTCGGGCEEEEEESSCEEECC-TTTTSCC--CCTTCSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSSCBG
T ss_pred hhcCCcccceEEEECCCceeEcC-CCCCchhhhcCCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999 99 99999999999999999999999999999999999999999999999879999
Q ss_pred CCCCCCCHHHHHHHHHHHHhh
Q psy559 347 DLGGTATSIDVVQNIIKLVQT 367 (376)
Q Consensus 347 DlgG~~sT~e~~daV~~~l~~ 367 (376)
||||++||+||+|+|+++|++
T Consensus 328 Dlgg~~~T~e~~daI~~~l~~ 348 (349)
T 3blx_A 328 DIGGSSSTTDFTNEIINKLST 348 (349)
T ss_dssp GGTCCBCHHHHHHHHHHHHHT
T ss_pred CcCCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999964
No 3
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=4.6e-110 Score=825.85 Aligned_cols=325 Identities=38% Similarity=0.633 Sum_probs=310.6
Q ss_pred cCCCCeeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCCCC
Q psy559 38 AKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSLD 114 (376)
Q Consensus 38 ~~~~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~~~ 114 (376)
++|+++++|++|||||||||||+++++||++++++++|+++++|..+ ++++ |++++++|+++|++||||+++|.+.
T Consensus 16 ~~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~-~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~ 94 (354)
T 3blx_B 16 NPSTGKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIF-VNGLTTIPDPAVQSITKNLVALKGPLATPIGK 94 (354)
T ss_dssp CTTTSCEECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCCCEE-ETTEEECCHHHHHHHHHHSEEEECCCCCC---
T ss_pred hhcCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEEechhh-hhhCCCCCHHHHHHHHHCCEEEECCccCCCCc
Confidence 46778899999999999999999999999999999999999999987 6653 8999999999999999999999653
Q ss_pred --chhhHHHhhhhcccEee-----cccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHH
Q psy559 115 --SLWTLKLCRLILRVIAM-----MILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAF 187 (376)
Q Consensus 115 --~~~~~~LR~~~ldLyan-----~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AF 187 (376)
++.+++|| ++|||||| ++||++++++++|||||||||||+|+|.+++..+++++++++|||+++|||+|+||
T Consensus 95 ~~~s~~l~lR-~~ldlyan~RP~~~~pg~~s~~~~vD~vivREnteg~Y~g~e~~~~~~~a~~~~~~T~~~~eRiar~AF 173 (354)
T 3blx_B 95 GHRSLNLTLR-KTFGLFANVRPAKSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAF 173 (354)
T ss_dssp -CCCHHHHHH-HHHTEEEEEEEEECCTTCCCSSCSCEEEEEEECSSEEEEEEEEECSTTEEEEEEEEEHHHHHHHHHHHH
T ss_pred cccCchHHHH-HHcCCEEEEEEecccCCCCCCCCCccEEEEecCcCCcccCCcccccCCEEEEEEEEcHHHHHHHHHHHH
Confidence 56799999 99999999 88999999999999999999999999999877778999999999999999999999
Q ss_pred HHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCcc--EEecCCcchhhHhhh
Q psy559 188 EYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFD--VMVMPNLYGAITSNV 265 (376)
Q Consensus 188 e~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fd--ViV~~NlfGDILSDl 265 (376)
+||++|+|||||+|||+|||++|||||+++|+||+++||+|+++|+|||+++||||++|++|| ||||+|||||||||+
T Consensus 174 e~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~ 253 (354)
T 3blx_B 174 EYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDL 253 (354)
T ss_dssp HHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHH
Confidence 999999899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hhhh-cCCcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC-CC
Q psy559 266 ICGL-IGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINED-KI 343 (376)
Q Consensus 266 aa~l-~GglGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~-~~ 343 (376)
+|++ +||+||+||+|||++.+|||| +|||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++
T Consensus 254 aa~l~~GslGl~pSanig~~~a~fEp-~HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g~~~ 332 (354)
T 3blx_B 254 NSGLSAGSLGLTPSANIGHKISIFEA-VHGSAPDIAGQDKANPTALLLSSVMMLNHMGLTNHADQIQNAVLSTIASGPEN 332 (354)
T ss_dssp HHHHHTSSGGGCEEEEEESSCEEEEE-CSCCCGGGTTTTCCCTHHHHHHHHHHHHHHTCHHHHHHHHHTHHHHHTSSTTS
T ss_pred HHhhccCCccccceeEECCCceEEec-CCCChhhhcCCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCc
Confidence 9999 999999999999999999999 99999999999999999999999999999999999999999999999887 59
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH
Q psy559 344 HTPDLGGTATSIDVVQNIIKLV 365 (376)
Q Consensus 344 ~T~DlgG~~sT~e~~daV~~~l 365 (376)
+|+||||++||+||+|+|+++|
T Consensus 333 ~T~DlgG~~~T~e~~dav~~~l 354 (354)
T 3blx_B 333 RTGDLAGTATTSSFTEAVIKRL 354 (354)
T ss_dssp SCGGGTCCCCHHHHHHHHHHTC
T ss_pred cCCCcCCCCCHHHHHHHHHhhC
Confidence 9999999999999999999864
No 4
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=3.4e-109 Score=822.14 Aligned_cols=323 Identities=30% Similarity=0.487 Sum_probs=302.9
Q ss_pred CCCeeeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCC---CChHHHHHHHHh-cCeEEEcccccC
Q psy559 40 YGGRNAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSN---DDLEYAITSIRR-NGVAIKGNIETG 111 (376)
Q Consensus 40 ~~~~~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~---~~~~~~~~~~~~-~dail~G~i~~p 111 (376)
++++++|+||||||||||||+++++||+++ +++++|+++++|.+++++ ..|++++++|++ +|++||||+++|
T Consensus 7 ~~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~Gavg~P 86 (366)
T 3ty4_A 7 ATRRIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSP 86 (366)
T ss_dssp --CEEEEEEEEESTTHHHHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEEEECCCC
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEECCccCC
Confidence 457899999999999999999999999986 678999999999887754 349999999999 599999999999
Q ss_pred CCC----chhhHHHhhhhcccEee-----cccccccCCCCccEEEEccCCcceeecccccc----cCceEEEeEeecHHH
Q psy559 112 SLD----SLWTLKLCRLILRVIAM-----MILSVRCRQQGIDIVIVRQNTEGEYAMLEHES----VDGVVESMKIITAAN 178 (376)
Q Consensus 112 ~~~----~~~~~~LR~~~ldLyan-----~~pg~~~~~~~iDivivREnteG~Y~g~e~~~----~~~va~~~~~~Tr~~ 178 (376)
.+. ++.++.|| |+|||||| ++||++ ..++|||||||||||+|+|.+++. .+++++++++|||++
T Consensus 87 ~~~~~~~~s~~l~LR-k~ldlyaNvRP~~~~~g~~--~~~vD~vivREnTeG~Y~g~e~~~~~~~~~~~a~~~~~~Tr~~ 163 (366)
T 3ty4_A 87 THKVAGYSSPIVALR-KKMGLYANVRPVKSLDGAK--GKPVDLVIVRENTECLYVKEERMVQNTPGKRVAEAIRRISEEA 163 (366)
T ss_dssp SSCCTTCCCHHHHHH-HHTTCCEEEEEEECCTTCS--SSCCEEEEEEECSCBGGGCCEEEEECCTTCCEEEEEEEEEHHH
T ss_pred CCCCcccccchHHHH-HHhCCeEEEEEEeccCCCC--CCCCcEEEEeeCCCCEeecCcceeccCCCCceEEEEEEecHHH
Confidence 653 45699999 99999999 778873 357999999999999999998865 357999999999999
Q ss_pred HHHHHHHHHHHHHhC------------CCCcEEEEecCCccccchHHHHHHHHHH---HhhCCCeeeeeeeHHHHHHHHH
Q psy559 179 SYRLSKYAFEYAKKF------------GRKKVTTVHKANIMKISDGLFLEISRKV---AKEYPEIEHNDMIIDNTCMQLV 243 (376)
Q Consensus 179 ~eRiar~AFe~A~~r------------~rk~Vt~v~KaNvl~~sdglf~~~~~ev---a~eyP~I~~e~~~vD~~~~~Lv 243 (376)
+|||+|+||+||++| +|||||+|||+|||+.|||||+++|+|| +++||+|+++|+|||++|||||
T Consensus 164 ~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~ev~~~a~eypdV~~~~~~VD~~am~lv 243 (366)
T 3ty4_A 164 STKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLF 243 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHHHHGGGCGGGTTSEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHHHHHHhHhhCCCceEEeeeHHHHHHHHH
Confidence 999999999999998 6899999999999999999999999999 9999999999999999999999
Q ss_pred hCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCc
Q psy559 244 SNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGH 323 (376)
Q Consensus 244 ~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~ 323 (376)
++|++||||||+|||||||||++|+++||+||+||+|+|++++|||| +|||||||||||+|||+|+|||++|||+|||+
T Consensus 244 ~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~a~fEp-vHGSAPdIaGk~iANP~A~IlS~amML~~lg~ 322 (366)
T 3ty4_A 244 REPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDNFVMSEP-VHGSAPDIAGRGIANPVATFRSVALMLEFMGH 322 (366)
T ss_dssp HCGGGCSEEEECHHHHHHHHHHHHGGGSCGGGCCCEEECSSCEEECC-SSCCCTTTTTSSCCCCHHHHHHHHHHHHHTTC
T ss_pred hCcccCcEEEECccchHHHHHHHHHhcCchhhhcceeeCCCceEEec-CCCChhhcCCCCccCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy559 324 MKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQ 366 (376)
Q Consensus 324 ~~~A~~I~~AV~~~l~~~~~~T~DlgG~~sT~e~~daV~~~l~ 366 (376)
.++|++|++||.+++++|+++|+||||++||+||+|+|+++|+
T Consensus 323 ~~~A~~Ie~Av~~~l~~G~~~T~Dlgg~~~T~e~~daV~~~l~ 365 (366)
T 3ty4_A 323 QDAAADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDAVLANIH 365 (366)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCGGGTSCCCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHcCCccCcccCCCcCHHHHHHHHHHHhh
Confidence 9999999999999999988999999999999999999999884
No 5
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=2.5e-109 Score=823.68 Aligned_cols=324 Identities=30% Similarity=0.407 Sum_probs=304.8
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccc-cCCCC---CChHHHHHHHHhcCeEEEcccccCCC
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDP-KSDSN---DDLEYAITSIRRNGVAIKGNIETGSL 113 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~-~~~~~---~~~~~~~~~~~~~dail~G~i~~p~~ 113 (376)
.+++|+||||||||||||+++++||+++ +++++|+++++|. +++++ ..|++++++|+++|++||||+++|.+
T Consensus 4 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (364)
T 3flk_A 4 HSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDK 83 (364)
T ss_dssp -CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTT
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 4689999999999999999999999986 7999999999999 66644 34899999999999999999999963
Q ss_pred -C-----chhhHHHhhhhcccEee-----cccccccCC-----CCccEEEEccCCcceeeccccccc----CceEEEeEe
Q psy559 114 -D-----SLWTLKLCRLILRVIAM-----MILSVRCRQ-----QGIDIVIVRQNTEGEYAMLEHESV----DGVVESMKI 173 (376)
Q Consensus 114 -~-----~~~~~~LR~~~ldLyan-----~~pg~~~~~-----~~iDivivREnteG~Y~g~e~~~~----~~va~~~~~ 173 (376)
. ++.++.|| |+|||||| ++||+++|+ +++|||||||||||+|+|.+++.. +++++++++
T Consensus 84 ~~~~~~~~s~~l~LR-~~ldlyanvRP~~~~pg~~splk~~~~~~vD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~ 162 (364)
T 3flk_A 84 VPDHISLWGSLLKFR-REFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESI 162 (364)
T ss_dssp BCHHHHHHTTHHHHH-HHTTCCEEEEEEECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEESTTSTTCEEEEEEE
T ss_pred CCCCcCcccchHHHH-HHhCCeEEEEEEeccCCcccccccccCCCCCEEEEeeCCCceecCcCceeccCCCCCEEEEEEE
Confidence 2 24589999 99999999 789999886 689999999999999999987653 678999999
Q ss_pred ecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEe
Q psy559 174 ITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMV 253 (376)
Q Consensus 174 ~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV 253 (376)
|||+++|||+|+||+||++|++||||+|||+|||++|+|||+++|+||+++||+|+++|+|||++|||||++|++|||||
T Consensus 163 ~T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva~eypdv~~~~~~vD~~am~lv~~P~~FDViv 242 (364)
T 3flk_A 163 FTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVV 242 (364)
T ss_dssp EEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHHTTCTTCEEEEEEHHHHHHHHHHCGGGCSEEE
T ss_pred ECHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHHHHCCCceEEeeEHHHHHHHHHhCcccCcEEE
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHhhhhhhhcCCcccccccccCCCc---eeeccCCCCccccccCCCccchhHHHHHHHHHHHHcC-----cHH
Q psy559 254 MPNLYGAITSNVICGLIGGAGLISGKNYGDHY---AVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLG-----HMK 325 (376)
Q Consensus 254 ~~NlfGDILSDlaa~l~GglGl~psanig~~~---a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg-----~~~ 325 (376)
|+|||||||||++|+++||+||+||+|+|++. +|||| +|||||||||||+|||+|+|||++|||+||| +.+
T Consensus 243 t~NlfGDILSD~aa~l~GslGl~pSanig~~~~~~a~fEp-~HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~~~~~ 321 (364)
T 3flk_A 243 ASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEP-VHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQR 321 (364)
T ss_dssp ECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEE-SSCCCTTTTTSSCCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ecccchHHHHHHHHHhcCCcccccccccCCCCCcceEEec-CCCCchhhcCCCccCcHHHHHHHHHHHHHhCcccchhHH
Confidence 99999999999999999999999999999865 99999 9999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q psy559 326 HASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQTN 368 (376)
Q Consensus 326 ~A~~I~~AV~~~l~~~~~~T~DlgG~~sT~e~~daV~~~l~~~ 368 (376)
+|++|++||.+++++| ++|+||||++||+||+|+|+++|++.
T Consensus 322 ~A~~Ie~Av~~~l~~G-~~T~Dlgg~~~T~e~~~aV~~~l~~~ 363 (364)
T 3flk_A 322 AHDDMLNAIERVIADG-SVTPDMGGTLSTQQVGAAISDTLARL 363 (364)
T ss_dssp HHHHHHHHHHHHHHHT-CCCGGGTCCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcC-CCCcccCCCcCHHHHHHHHHHHHhhc
Confidence 9999999999999886 79999999999999999999999754
No 6
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=1.8e-108 Score=815.61 Aligned_cols=322 Identities=28% Similarity=0.400 Sum_probs=300.9
Q ss_pred CCeeeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCC---CChHHHHHHHHhcCeEEEcccccCCC
Q psy559 41 GGRNAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSN---DDLEYAITSIRRNGVAIKGNIETGSL 113 (376)
Q Consensus 41 ~~~~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~---~~~~~~~~~~~~~dail~G~i~~p~~ 113 (376)
.++++|++|||||||||||+++++||+++ +++|+|+++++|..++++ ..|++++++|+++|++||||+++|.+
T Consensus 4 m~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (361)
T 3udu_A 4 MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKW 83 (361)
T ss_dssp -CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGG
T ss_pred CcceeEEEECCCccCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCCc
Confidence 35689999999999999999999999987 799999999999988754 34999999999999999999999953
Q ss_pred C------chh---hHHHhhhhcccEee-----cccccc--cC------CCCccEEEEccCCcceeecccccccCceEEEe
Q psy559 114 D------SLW---TLKLCRLILRVIAM-----MILSVR--CR------QQGIDIVIVRQNTEGEYAMLEHESVDGVVESM 171 (376)
Q Consensus 114 ~------~~~---~~~LR~~~ldLyan-----~~pg~~--~~------~~~iDivivREnteG~Y~g~e~~~~~~va~~~ 171 (376)
+ +++ ++.|| |+|||||| ++||++ +| ++++|||||||||||+|+|.++.. +++++++
T Consensus 84 ~~~~~~~~~~~~~~l~LR-k~ldLyaNvRP~~~~pg~~~~splk~~~~~~~vD~vivREnTeG~Y~g~~~~~-~~~a~~~ 161 (361)
T 3udu_A 84 DNLPIDQRPERASLLPLR-KHFNLFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLG-KESAYDT 161 (361)
T ss_dssp TTSCGGGSHHHHHHHHHH-HHHTCCEEEEEEECCGGGGGGSSBCHHHHTTCCEEEEEEECSSGGGTSCEEEC-SSEEEEE
T ss_pred CCCCCCcCccccchHHHH-HHcCCEEEEEEeeccCCccccCCCccccccCCCcEEEEcccCCCeecCccCCc-CceEEEE
Confidence 2 222 88999 99999999 789985 44 568999999999999999987654 6789999
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccE
Q psy559 172 KIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDV 251 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdV 251 (376)
++|||+++|||+|+||+||++| |||||+|||+|||+ +++||+++|+||+++||+|+++|+|||++|||||++|++|||
T Consensus 162 ~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNvl~-t~glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~~FDV 239 (361)
T 3udu_A 162 EIYTKKEIERIARIAFESARIR-KKKVHLIDKANVLA-SSILWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFDV 239 (361)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT-TSEEEEEECTTTCH-HHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSE
T ss_pred EeccHHHHHHHHHHHHHHHHHc-CCcEEEEECchhhc-cchHHHHHHHHHHHHCCCCeEEeeeHHHHHHHHHhCcccCcE
Confidence 9999999999999999999998 89999999999996 899999999999999999999999999999999999999999
Q ss_pred EecCCcchhhHhhhhhhhcCCcccccccccCCC-ceeeccCCCCccccccCCCccchhHHHHHHHHHHHH-cCcHHHHHH
Q psy559 252 MVMPNLYGAITSNVICGLIGGAGLISGKNYGDH-YAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH-LGHMKHASI 329 (376)
Q Consensus 252 iV~~NlfGDILSDlaa~l~GglGl~psanig~~-~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~-lg~~~~A~~ 329 (376)
|||+|||||||||++|+++||+||+||+|||++ ++|||| +|||||||||||+|||+|+|||++|||+| ||++++|++
T Consensus 240 iVt~NlfGDILSD~aa~l~GslGl~pSanig~~~~a~fEp-vHGSAPdIAGk~iANP~A~IlS~amML~~~lg~~~~A~~ 318 (361)
T 3udu_A 240 MLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP-AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQD 318 (361)
T ss_dssp EEECHHHHHHHHHHHHHHHCCGGGCEEEEECTTSCEEEEE-SSCCCGGGTTSSCCCCHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred EEecchhHHHHHHHHHHhcCchhhcceeeeCCCCCeeeec-CCCChhhhcCCCccCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999986 699999 99999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCC--CCCHHHHHHHHHHHHhhc
Q psy559 330 IKLAIEKTINEDKIHTPDLGG--TATSIDVVQNIIKLVQTN 368 (376)
Q Consensus 330 I~~AV~~~l~~~~~~T~DlgG--~~sT~e~~daV~~~l~~~ 368 (376)
|++||.+++++| ++|+|||| ++||+||+|+|+++|++.
T Consensus 319 Ie~Av~~~l~~g-~~T~DlgG~~~~~T~e~~~aV~~~l~~~ 358 (361)
T 3udu_A 319 IENAISLALAQG-KMTKDLNAKSYLNTDEMGDCILEILKEN 358 (361)
T ss_dssp HHHHHHHHHHTT-CCCTTTCSSSCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC-CcCcCCCCCCccCHHHHHHHHHHHHHhh
Confidence 999999999886 89999999 899999999999999754
No 7
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=1.9e-108 Score=815.51 Aligned_cols=326 Identities=28% Similarity=0.441 Sum_probs=304.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCC---CChHHHHHHHHhcCeEEEcccccCCCC-
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSN---DDLEYAITSIRRNGVAIKGNIETGSLD- 114 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~---~~~~~~~~~~~~~dail~G~i~~p~~~- 114 (376)
+++|+||||||||||||+++++||+++ +++++|+++++|..++++ ..|++++++|+++|++||||+++|.+.
T Consensus 3 ~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~~ 82 (359)
T 2y3z_A 3 SMKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDG 82 (359)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGTT
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCcccc
Confidence 589999999999999999999999998 789999999999988754 349999999999999999999999532
Q ss_pred -----ch--hhHHHhhhhcccEee-----cccccc--cCC-----CCccEEEEccCCcceeecccccccCceEEEeEeec
Q psy559 115 -----SL--WTLKLCRLILRVIAM-----MILSVR--CRQ-----QGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIIT 175 (376)
Q Consensus 115 -----~~--~~~~LR~~~ldLyan-----~~pg~~--~~~-----~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~T 175 (376)
++ .++.|| |+|||||| ++||++ +|. +++|||||||||||+|+|.++...+++++++++||
T Consensus 83 ~~~~~~~~~~~l~LR-~~ldlyanvRP~~~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~~~~~~a~~~~~~T 161 (359)
T 2y3z_A 83 LPRKIRPETGLLSLR-KSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYS 161 (359)
T ss_dssp SCGGGCHHHHHHHHH-HHTTEEEEEEEEECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEECSSCEECCCCCC
T ss_pred CCcccccchhHHHHH-HHhCCEEEEEEeeccCCCCCCCCcccccCCCceEEEEecCccceEecCCCcCCCceEEEEEEEc
Confidence 11 189999 99999999 889984 553 57999999999999999998655567899999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecC
Q psy559 176 AANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMP 255 (376)
Q Consensus 176 r~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~ 255 (376)
|+++|||+|+||+||++| |||||+|||+|||+ +++||+++|+||+++||+|+++++|||++|||||++|++||||||+
T Consensus 162 ~~~~eRIar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~VD~~~mqlv~~P~~FDVivt~ 239 (359)
T 2y3z_A 162 KPEVERVARVAFEAARKR-RKHVVSVDKANVLE-VGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 239 (359)
T ss_dssp HHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHc-CCeEEEEECCcccc-ccHHHHHHHHHHHHHCCcEEEEeeEHHHHHHHHhhCcccccEEEEc
Confidence 999999999999999998 89999999999999 8899999999999999999999999999999999999999999999
Q ss_pred CcchhhHhhhhhhhcCCcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHH-cCcHHHHHHHHHHH
Q psy559 256 NLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH-LGHMKHASIIKLAI 334 (376)
Q Consensus 256 NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~-lg~~~~A~~I~~AV 334 (376)
|||||||||++|+++||+||+||+|||++.+|||| +|||||||||||+|||+|+|||++|||+| ||+.++|++|++||
T Consensus 240 NlfGDILSD~aa~l~GslGl~pSanig~~~~~fEp-vHGSAPdiAGk~iANP~A~IlS~ammL~~slg~~~~A~~Ie~Av 318 (359)
T 2y3z_A 240 NIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAV 318 (359)
T ss_dssp HHHHHHHHHHHHTTTSCGGGCEEEEEESSCCEEEE-SSCCCGGGTTSSCSCTHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHhcCcccccceeEeCCCCceeec-CCCChhhhCCCCCcCCHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99999999999999999999999999998889999 99999999999999999999999999999 99999999999999
Q ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHhhccccccC
Q psy559 335 EKTINEDKIHTPDLGGTATSIDVVQNIIKLVQTNDLRHHV 374 (376)
Q Consensus 335 ~~~l~~~~~~T~DlgG~~sT~e~~daV~~~l~~~~~~~~~ 374 (376)
.+++++| +|+||||++||+||+|+|+++|++..|.||-
T Consensus 319 ~~~l~~g--~T~Dlgg~~~T~e~~daV~~~l~~~~~~~~~ 356 (359)
T 2y3z_A 319 AKALLET--PPPDLGGSAGTEAFTATVLRHLAAAALEHHH 356 (359)
T ss_dssp HHHHHHS--CCGGGTCCCCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHcC--CCCccCCCCCHHHHHHHHHHHHhhhhhhhcc
Confidence 9999886 9999999999999999999999998888874
No 8
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=1.3e-107 Score=814.63 Aligned_cols=319 Identities=31% Similarity=0.475 Sum_probs=295.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCCC-
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSLD- 114 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~~- 114 (376)
+++|++|||||||||||+++++||+++ +++|+|+++++|..+++++ .|++++++|+++|++||||+++|.++
T Consensus 23 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg~P~~~~ 102 (390)
T 3u1h_A 23 KKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVGGPKWDQ 102 (390)
T ss_dssp -CEEEEEEESTTHHHHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECCCSTTTS
T ss_pred cceEEEECCCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCcCC
Confidence 489999999999999999999999998 8999999999999887654 39999999999999999999999642
Q ss_pred -----c--hhhHHHhhhhcccEee-----cccccc--cCC-----CCccEEEEccCCcceeeccccccc---CceEEEeE
Q psy559 115 -----S--LWTLKLCRLILRVIAM-----MILSVR--CRQ-----QGIDIVIVRQNTEGEYAMLEHESV---DGVVESMK 172 (376)
Q Consensus 115 -----~--~~~~~LR~~~ldLyan-----~~pg~~--~~~-----~~iDivivREnteG~Y~g~e~~~~---~~va~~~~ 172 (376)
+ +.++.|| |+|||||| ++||++ +|. +++|||||||||||+|+|.+++.. .+++++++
T Consensus 103 ~~~~~~~~~~ll~LR-k~ldLyANvRP~k~~pg~~~~splk~~~~~~vD~vIVREnTeG~Y~g~~~~~~~~g~~~a~~~~ 181 (390)
T 3u1h_A 103 NPSELRPEKGLLGIR-KGLDLFANLRPVKVYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEEGEEAAVDTL 181 (390)
T ss_dssp SCCSSSSSCCHHHHH-HHTTEEEEEEEEECCGGGTTSSSBCHHHHSSCEEEEEEECSSBSCC-------CTTCSEEEEEE
T ss_pred CCcccCccchHHHHH-HHhCCeEEEEEeeccCCccccCCcccccccCCcEEEEeeCCCCeecCccccccCCCCceEEEEE
Confidence 2 4489999 99999999 889997 665 689999999999999999987752 35799999
Q ss_pred eecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEE
Q psy559 173 IITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVM 252 (376)
Q Consensus 173 ~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdVi 252 (376)
+|||+++|||+|+||+||++| |||||+|||+||| .||+||+++|+||+++||+|+++++|||++|||||++|++||||
T Consensus 182 ~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNVl-~t~glfr~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~FDVi 259 (390)
T 3u1h_A 182 LYTREEIERIIRKAFELALTR-KKKVTSVDKANVL-ESSRLWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQFDVI 259 (390)
T ss_dssp EEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTC-HHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEE
T ss_pred EecHHHHhHHHHHHHHHHHHc-CCceEEEECCccc-ccchHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhCcccCcEE
Confidence 999999999999999999998 8999999999999 68999999999999999999999999999999999999999999
Q ss_pred ecCCcchhhHhhhhhhhcCCcccccccccCCC-ceeeccCCCCccccccCCCccchhHHHHHHHHHHHH-cCcHHHHHHH
Q psy559 253 VMPNLYGAITSNVICGLIGGAGLISGKNYGDH-YAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH-LGHMKHASII 330 (376)
Q Consensus 253 V~~NlfGDILSDlaa~l~GglGl~psanig~~-~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~-lg~~~~A~~I 330 (376)
||+|||||||||++|+++||+||+||+|+|++ ++|||| +|||||||||||+|||+|+|||++|||+| ||+.++|++|
T Consensus 260 Vt~NlfGDILSD~aA~l~GslGl~pSanig~~~~a~fEp-vHGSAPDIAGk~iANP~A~IlS~amML~~~lg~~~~A~~I 338 (390)
T 3u1h_A 260 VTENMFGDILSDEASMITGSLGMLPSASLSTDGLGLYEP-VHGSAPDIAGKGIANPLATILSAAMMLRYSFGLEEEAKAI 338 (390)
T ss_dssp EECHHHHHHHHHHHHHHHSCTTTCEEEEEETTSCEEEEE-SSCCCTTTTTSSCSCTHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred EecccchHHHHHHHHHhcCchhhcceeeecCCCCeeEec-CCCChhhhcCCCcCCcHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999984 899999 99999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHcCCCCCCCC--CC--CCCHHHHHHHHHHHHh
Q psy559 331 KLAIEKTINEDKIHTPDL--GG--TATSIDVVQNIIKLVQ 366 (376)
Q Consensus 331 ~~AV~~~l~~~~~~T~Dl--gG--~~sT~e~~daV~~~l~ 366 (376)
++||.+++++| ++|+|| || .+||+||+|+|+++|+
T Consensus 339 e~AV~~vl~~G-~~T~Dl~~gG~~~~~T~e~~daV~~~l~ 377 (390)
T 3u1h_A 339 EKAVEKVLAEG-YRTADIAKPGGKYVSTTEMTDEVKAAVV 377 (390)
T ss_dssp HHHHHHHHHHT-CCBTTTSCSSCCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CcChhhccCCCCccCHHHHHHHHHHHHh
Confidence 99999999886 999999 66 7999999999999997
No 9
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=1.5e-107 Score=810.45 Aligned_cols=320 Identities=30% Similarity=0.428 Sum_probs=302.4
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCC---CChHHHHHHHHhcCeEEEcccccCCCC
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSN---DDLEYAITSIRRNGVAIKGNIETGSLD 114 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~---~~~~~~~~~~~~~dail~G~i~~p~~~ 114 (376)
..++|++|||||||||||+++++||+++ +++++|+++++|.+++++ ..|++++++|+++|++||||+++|.+.
T Consensus 11 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~ 90 (366)
T 1vlc_A 11 HHMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWD 90 (366)
T ss_dssp SEEEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGT
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCccc
Confidence 5789999999999999999999999998 899999999999988754 349999999999999999999999532
Q ss_pred ------c--hh-hHHHhhhhcccEee-----cccccc--cCC------CCccEEEEccCCcceeecccccccCceEEEeE
Q psy559 115 ------S--LW-TLKLCRLILRVIAM-----MILSVR--CRQ------QGIDIVIVRQNTEGEYAMLEHESVDGVVESMK 172 (376)
Q Consensus 115 ------~--~~-~~~LR~~~ldLyan-----~~pg~~--~~~------~~iDivivREnteG~Y~g~e~~~~~~va~~~~ 172 (376)
+ +. ++.|| |+|||||| ++||++ ++. +++|||||||||||+|+|.++...++++++++
T Consensus 91 ~~~~~~r~~~~~~l~LR-k~ldlyaN~RP~~~~pgl~~~splk~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~a~~~~ 169 (366)
T 1vlc_A 91 DLPPEKRPEIGGLLALR-KMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTM 169 (366)
T ss_dssp TSCSTTSHHHHTHHHHH-HHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEECSSCEEEEC
T ss_pred cCCcccCcccchhHHHH-HHhCCEEEEEEccccCCCCCcCCCcccccCCCceEEEEEeCCCCeecCCccccCCCeEEEEE
Confidence 1 33 89999 99999999 789997 465 67999999999999999999877778999999
Q ss_pred eecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEE
Q psy559 173 IITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVM 252 (376)
Q Consensus 173 ~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdVi 252 (376)
+|||++++||+|+||+||++| |||||+|||+|||+ +++||+++|+||+++||+|++++++||++|||||++|++||||
T Consensus 170 ~~Tr~~~eRIar~AFe~A~~r-rkkVt~v~KaNvlk-t~glf~~~~~eva~eypdV~~~~~~VD~~~mqlv~~P~~FDVi 247 (366)
T 1vlc_A 170 IYDRKTVERIARTAFEIAKNR-RKKVTSVDKANVLY-SSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDVI 247 (366)
T ss_dssp CCCHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEE
T ss_pred EEcHHHHHHHHHHHHHHHHHc-CCeEEEEECCcccc-cchHHHHHHHHHHHHCCCceEEeeeHHHHHHHHhhCcccceEE
Confidence 999999999999999999998 89999999999999 8999999999999999999999999999999999999999999
Q ss_pred ecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHH-cCcHHHHHHHH
Q psy559 253 VMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH-LGHMKHASIIK 331 (376)
Q Consensus 253 V~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~-lg~~~~A~~I~ 331 (376)
||+|||||||||++|+++||+||+||+|+| +.+|||| +|||||||||||+|||+|+|||++|||+| ||+.++|++|+
T Consensus 248 vt~NlfGDILSD~aa~l~GslGl~pSanig-~~alfEp-vHGSAPdIAGk~iANP~A~IlS~ammL~~slg~~~~A~~Ie 325 (366)
T 1vlc_A 248 LTTNMFGDILSDESAALPGSLGLLPSASFG-DKNLYEP-AGGSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKIE 325 (366)
T ss_dssp EECHHHHHHHHHHHTTSSSCGGGCEEEEES-SSEEEEE-SSCCCTTTTTTTCSCCHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred EEcchhHHHHHHHHHHhcCccccccEeeeC-Cceeeec-CCCchhhcCCCCccCcHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 999999999999999999999999999999 8899999 99999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHcCCCCCCCCC---CC-CCHHHHHHHHHHHHhh
Q psy559 332 LAIEKTINEDKIHTPDLG---GT-ATSIDVVQNIIKLVQT 367 (376)
Q Consensus 332 ~AV~~~l~~~~~~T~Dlg---G~-~sT~e~~daV~~~l~~ 367 (376)
+||.+++++| ++|+||| |+ +||+||+|+|+++|++
T Consensus 326 ~Av~~~l~~g-~~T~Dlg~~gg~~~~T~e~~daV~~~l~~ 364 (366)
T 1vlc_A 326 RAVELVIEEG-YRTRDIAEDPEKAVSTSQMGDLICKKLEE 364 (366)
T ss_dssp HHHHHHHHTT-CCCGGGCSSGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CcccccccCCCCCcCHHHHHHHHHHHHHh
Confidence 9999999887 9999998 67 8999999999999953
No 10
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=2.4e-107 Score=802.02 Aligned_cols=315 Identities=36% Similarity=0.540 Sum_probs=303.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCCCch
Q psy559 44 NAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSLDSL 116 (376)
Q Consensus 44 ~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~~~~ 116 (376)
++|++|||||||||||+++++||+++ +++++|+++++|..+++++ .|++++++|+++|++||||+++|.+ .
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~~--~ 79 (336)
T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESAA--D 79 (336)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTHH--H
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc--c
Confidence 68999999999999999999999998 8999999999999877544 4999999999999999999999953 2
Q ss_pred hhHHHhhhhcccEee-----cccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHH
Q psy559 117 WTLKLCRLILRVIAM-----MILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAK 191 (376)
Q Consensus 117 ~~~~LR~~~ldLyan-----~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~ 191 (376)
.++.|| |+|||||| ++||++++++++|+|||||||||+|+|.+++..+++++++++|||++++||+|+||+||+
T Consensus 80 ~~l~lR-~~ldlyan~RP~~~~pg~~~~~~~~D~vivREnteg~Y~g~~~~~~~~va~~~~~~T~~~~eRiar~AF~~A~ 158 (336)
T 1wpw_A 80 VVVKLR-QIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFAL 158 (336)
T ss_dssp HHHHHH-HTTTCCEEEEEEECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHhCCEEEEEEEeccCCCCCCCCCCcEEEEecCccCeEcCCccccCCCeEEEEEEecHHHHHHHHHHHHHHHH
Confidence 699999 99999999 889999999999999999999999999988777889999999999999999999999999
Q ss_pred hCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcC
Q psy559 192 KFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIG 271 (376)
Q Consensus 192 ~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~G 271 (376)
+| |||||+|||+|||++|||||+++|+||+++ +|+++|+|||+++||||++|++||||||+|||||||||++|+++|
T Consensus 159 ~r-rkkvt~v~KaNvlk~t~glf~~~~~eva~~--~I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~G 235 (336)
T 1wpw_A 159 RR-RKKVTCVHKANVMRITDGLFAEACRSVLKG--KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAG 235 (336)
T ss_dssp TT-TSEEEEEECTTTCTTHHHHHHHHHHHHHTT--TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHT
T ss_pred Hh-CCeEEEEECCcchhhhhHHHHHHHHHHHHh--CceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhcC
Confidence 98 899999999999999999999999999988 999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCc-------HHHHHHHHHHHHHHHHcCCCC
Q psy559 272 GAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGH-------MKHASIIKLAIEKTINEDKIH 344 (376)
Q Consensus 272 glGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~-------~~~A~~I~~AV~~~l~~~~~~ 344 (376)
|+||+||+|+|++.+|||| +|||||||||||+|||+|+|||++|||+|||+ .++|++|++||.+++++|+++
T Consensus 236 slGl~pSanig~~~a~fEp-~HGSApdiaGk~iANP~A~IlS~ammL~~lg~~d~~~~~~~~A~~Ie~Av~~~l~~g~~~ 314 (336)
T 1wpw_A 236 SLGIAPSANIGDKKALFEP-VHGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKAL 314 (336)
T ss_dssp CGGGCEEEEECSSCEEEEE-SSCCCTTTTTSSCCCTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CccccceEEECCCCceEeC-CCCCchhhCCCCCcCcHHHHHHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999 99999999999999999999999999999999 999999999999999998799
Q ss_pred CCCCCCCCCHHHHHHHHHHHH
Q psy559 345 TPDLGGTATSIDVVQNIIKLV 365 (376)
Q Consensus 345 T~DlgG~~sT~e~~daV~~~l 365 (376)
|+||||++||+||+|+|+++|
T Consensus 315 T~DlgG~~~T~e~~dav~~~l 335 (336)
T 1wpw_A 315 TPDVGGNATTDDLINEIYNKL 335 (336)
T ss_dssp CGGGTCCCCHHHHHHHHHHSC
T ss_pred CCccCCCCCHHHHHHHHHHhh
Confidence 999999999999999999876
No 11
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=5.9e-107 Score=808.32 Aligned_cols=322 Identities=27% Similarity=0.416 Sum_probs=299.4
Q ss_pred CCeeeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCC---CChHHHHHHHHhcCeEEEcccccCCC
Q psy559 41 GGRNAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSN---DDLEYAITSIRRNGVAIKGNIETGSL 113 (376)
Q Consensus 41 ~~~~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~---~~~~~~~~~~~~~dail~G~i~~p~~ 113 (376)
+..|+|++|||||||||||+++++||+++ +++|+|+++++|..++++ ..|++++++|+++|++||||+++|.+
T Consensus 11 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~~ 90 (375)
T 3vmk_A 11 GSSYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPKW 90 (375)
T ss_dssp TSCEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGG
T ss_pred CCcceEEEECCCcccHHHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCCc
Confidence 45799999999999999999999999987 689999999999988754 34999999999999999999999953
Q ss_pred C------chh---hHHHhhhhcccEee-----cccccc--cC------CCCccEEEEccCCcceeecccccc----cCce
Q psy559 114 D------SLW---TLKLCRLILRVIAM-----MILSVR--CR------QQGIDIVIVRQNTEGEYAMLEHES----VDGV 167 (376)
Q Consensus 114 ~------~~~---~~~LR~~~ldLyan-----~~pg~~--~~------~~~iDivivREnteG~Y~g~e~~~----~~~v 167 (376)
. +++ ++.|| |+|||||| ++||++ +| ++++|||||||||||+|+|.++.. .+++
T Consensus 91 ~~~~~~~~~~~~~~l~LR-k~ldLyaNvRP~~~~pg~~~~splk~~~~~~~vD~vIvREnTeG~Y~g~~~~~~~~~~~~~ 169 (375)
T 3vmk_A 91 EHLPPNDQPERGALLPLR-GHFELFCNMRPAKLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGEGENEE 169 (375)
T ss_dssp TTSCSTTSHHHHHHHHHH-HHTTCCEEEEEEECCTTCGGGSSBCHHHHTTCCEEEEEEECSSBTTTCSSCEEECCGGGCE
T ss_pred cCCCccccccccchHHHH-HHcCCeEEEEEEeccCCCcccCCCCcccccCCCCEEEEeeCCCCEecCCccccccCCCCce
Confidence 2 232 79999 99999999 789985 44 478999999999999999987654 2468
Q ss_pred EEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCC
Q psy559 168 VESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPK 247 (376)
Q Consensus 168 a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~ 247 (376)
++++++|||+++|||+|+||+||++| |||||+|||+|||+ +++||+++|+||+++||+|+++++|||++|||||++|+
T Consensus 170 a~~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNvl~-~~glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~ 247 (375)
T 3vmk_A 170 AFDTMRYSRKEIRRIAKIAFESAQGR-RKKVTSVDKANVLA-CSVLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPN 247 (375)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGG
T ss_pred EEEEEEEcHHHHHHHHHHHHHHHHHc-CCcEEEEECchhhh-hhhHHHHHHHHHHHHCCCceEeeeeHHHHHHHHHhCcc
Confidence 99999999999999999999999998 89999999999998 46999999999999999999999999999999999999
Q ss_pred CccEEecCCcchhhHhhhhhhhcCCcccccccccCCCc-eeeccCCCCccccccCCCccchhHHHHHHHHHHHH-cCcHH
Q psy559 248 QFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHY-AVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH-LGHMK 325 (376)
Q Consensus 248 ~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~-a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~-lg~~~ 325 (376)
+||||||+|||||||||++|+++||+||+||+|||++. +|||| +|||||||||||+|||+|+|||++|||+| ||+.+
T Consensus 248 ~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~~a~fEp-vHGSAPdIAGk~iANP~A~IlS~amML~~~lg~~~ 326 (375)
T 3vmk_A 248 EFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEP-AGGSAPDIAGQGIANPVAQILSAALLLRHSLKLED 326 (375)
T ss_dssp GCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEE-SSCCCTTTTTSSCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred cCcEEEECchhHHHHHHHHHHhcCCccccceeeeCCCCceEEec-CCCCchhccCCCccCcHHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999874 99999 99999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCC-C---C--CCCHHHHHHHHHHHHhh
Q psy559 326 HASIIKLAIEKTINEDKIHTPDL-G---G--TATSIDVVQNIIKLVQT 367 (376)
Q Consensus 326 ~A~~I~~AV~~~l~~~~~~T~Dl-g---G--~~sT~e~~daV~~~l~~ 367 (376)
+|++|++||.++|++| ++|+|| | | .+||+||+|+|+++|+.
T Consensus 327 ~A~~Ie~AV~~~l~~G-~~T~Dl~g~~~G~~~~~T~e~~~aV~~~l~~ 373 (375)
T 3vmk_A 327 AALAIEAAVSKALSDG-YLTCELLPASERSQAKSTSQMGDYIAQAIAE 373 (375)
T ss_dssp HHHHHHHHHHHHHHTT-CCCGGGSCGGGGGGCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC-CCCchhccCCCCCCccCHHHHHHHHHHHHhh
Confidence 9999999999999886 899999 5 6 89999999999999853
No 12
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-106 Score=823.97 Aligned_cols=324 Identities=35% Similarity=0.538 Sum_probs=310.8
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCC----ChHHHHHHHHhcCeEEEcccccCCCC--c
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSND----DLEYAITSIRRNGVAIKGNIETGSLD--S 115 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~----~~~~~~~~~~~~dail~G~i~~p~~~--~ 115 (376)
++++|++|||||||||||+++++||++++++++|+++++|.++++++ .|++++++|+++|++||||+++|.+. +
T Consensus 18 g~~~IavipGDGIGpEV~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkGavgtP~~~~~~ 97 (496)
T 2d1c_A 18 GRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPVGYGEK 97 (496)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCCCCCSSSSSC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEECCccCCCccccc
Confidence 37999999999999999999999999999999999999999877543 38999999999999999999999643 5
Q ss_pred hhhHHHhhhhcccEee-----cccccccCC--CCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHH
Q psy559 116 LWTLKLCRLILRVIAM-----MILSVRCRQ--QGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFE 188 (376)
Q Consensus 116 ~~~~~LR~~~ldLyan-----~~pg~~~~~--~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe 188 (376)
+.|++|| ++|||||| ++||+++++ +++|+|||||||||+|+|.+++..+++++++++|||+++|||+|+||+
T Consensus 98 s~~l~LR-k~LdLyaNlRP~k~~pgl~splk~~~vD~vIVREnTEG~Y~G~e~~~~~~va~~~~v~Tr~~ieRIar~AFe 176 (496)
T 2d1c_A 98 SANVTLR-KLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFE 176 (496)
T ss_dssp CHHHHHH-HHTTCCEEEEEEECBTTBCCTTTTSCCEEEEEEECSSBGGGCCEEEEETTEEEEEEEEEHHHHHHHHHHHHH
T ss_pred ChHHHHH-HHhCCEEEEEEEeecCCCCccccCCCccEEEEeeCcCceEeceeEecCCCeEEEEEEecHHHHHHHHHHHHH
Confidence 6799999 99999999 789999988 799999999999999999998877899999999999999999999999
Q ss_pred HHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhh
Q psy559 189 YAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICG 268 (376)
Q Consensus 189 ~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~ 268 (376)
||++|+|||||+|||+|||+.|||||+++|+||+++||+|+++|+|||+++||||++|++||||||+|||||||||++|+
T Consensus 177 ~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa~eYPdI~~e~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSDlaA~ 256 (496)
T 2d1c_A 177 LARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSG 256 (496)
T ss_dssp HHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHT
T ss_pred HHHhcCCCcEEEEECCCchhhHHHHHHHHHHHHHHHCCCceEEEEeHHHHHHHHhhCcCcceEEEECCcchHHHHHHHHH
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCC
Q psy559 269 LIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDL 348 (376)
Q Consensus 269 l~GglGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~Dl 348 (376)
++||+||+||+|||++.+|||| +|||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++|+++|+||
T Consensus 257 l~GslGlapSanig~~~a~FEp-vHGSAPDIAGk~iANP~A~IlSaamML~hlG~~~~A~~Ie~AV~~vl~~G~~~T~DL 335 (496)
T 2d1c_A 257 LIGGLGFAPSANIGNEVAIFEA-VHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEGRVLTGDV 335 (496)
T ss_dssp TTTCGGGCEEEEECSSCEEEEE-SSCCCTTTTTSSCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSSCBHHH
T ss_pred hcCCcccCcEEEECCCCceeeC-CCCchhhhcCCCccCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcCCeecccc
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999988999999
Q ss_pred CC---CCCHHHHHHHHHHHHhh
Q psy559 349 GG---TATSIDVVQNIIKLVQT 367 (376)
Q Consensus 349 gG---~~sT~e~~daV~~~l~~ 367 (376)
|| ++||+||+|+|+++|++
T Consensus 336 gg~~~~~sT~e~~daV~~~L~~ 357 (496)
T 2d1c_A 336 VGYDRGAKTTEYTEAIIQNLGK 357 (496)
T ss_dssp HCTTTCBCHHHHHHHHHHTTTC
T ss_pred CCCCCCcCHHHHHHHHHHHHhh
Confidence 98 89999999999999954
No 13
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=1.6e-106 Score=803.86 Aligned_cols=321 Identities=28% Similarity=0.436 Sum_probs=298.3
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCCC
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSLD 114 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~~ 114 (376)
++++|+||||||||||||+++++||+++ +++++|+++++|..+++++ .|++++++|+++|++||||+++|.+.
T Consensus 3 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~~~ 82 (363)
T 1cnz_A 3 KNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWE 82 (363)
T ss_dssp CCEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGT
T ss_pred CccEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCccc
Confidence 4689999999999999999999999998 7999999999999887543 49999999999999999999999531
Q ss_pred ---------chhhHHHhhhhcccEee-----cccccc--cCC------CCccEEEEccCCcceeecccccc----cCceE
Q psy559 115 ---------SLWTLKLCRLILRVIAM-----MILSVR--CRQ------QGIDIVIVRQNTEGEYAMLEHES----VDGVV 168 (376)
Q Consensus 115 ---------~~~~~~LR~~~ldLyan-----~~pg~~--~~~------~~iDivivREnteG~Y~g~e~~~----~~~va 168 (376)
++.+++|| |+|||||| ++||++ ++. +++|||||||||||+|+|.++.. .++++
T Consensus 83 ~~~~~~~~e~~~~l~LR-~~ldlyanvRP~~~~pgl~~~splk~~~~~~~vDivivREnteg~Y~g~~~~~~~~~~~~~a 161 (363)
T 1cnz_A 83 NLPPESQPERGALLPLR-KHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKA 161 (363)
T ss_dssp TSCGGGSTTHHHHHHHH-HHHTCCEEEEEEECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEECCGGGCEE
T ss_pred cCCcccCcccchHHHHH-HHcCCEEEEEEEEecCCccCCCCCcccccCCCCCEEEEecccCCeecCCcCccccCCCCceE
Confidence 13489999 99999999 789984 454 57999999999999999986432 24679
Q ss_pred EEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCC
Q psy559 169 ESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQ 248 (376)
Q Consensus 169 ~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~ 248 (376)
+++++|||++++||+|+||+||++| |||||+|||+|||+ +++||+++|+||+++||+|+++|+|||++|||||++|++
T Consensus 162 ~~~~~~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~ 239 (363)
T 1cnz_A 162 FDTEVYHRFEIERIARIAFESARKR-RRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQ 239 (363)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGG
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHhc-CCeEEEEECCcccc-cchhHHHHHHHHHHHCCCceEeeeeHHHHHHHHhhCccc
Confidence 9999999999999999999999998 89999999999999 799999999999999999999999999999999999999
Q ss_pred ccEEecCCcchhhHhhhhhhhcCCcccccccccCCCc-eeeccCCCCccccccCCCccchhHHHHHHHHHHHH-cCcHHH
Q psy559 249 FDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHY-AVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH-LGHMKH 326 (376)
Q Consensus 249 fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~-a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~-lg~~~~ 326 (376)
||||||+|||||||||++|+++||+||+||+|+|++. +|||| +|||||||||||+|||+|+|||++|||+| ||+.++
T Consensus 240 FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~~a~fEp-vHGSAPdiAGk~iANP~A~IlS~ammL~~~lg~~~~ 318 (363)
T 1cnz_A 240 FDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEP-AGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDA 318 (363)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEE-SSCCCGGGTTTTCSCCHHHHHHHHHHHHHHSSCHHH
T ss_pred ceEEEECCcchHHHHHHHHHhcCCCcccccceeCCCCCeEEEc-CCCChhhhcCCCccCcHHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999875 99999 99999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCC-CC-C-CCHHHHHHHHHHHHhh
Q psy559 327 ASIIKLAIEKTINEDKIHTPDL-GG-T-ATSIDVVQNIIKLVQT 367 (376)
Q Consensus 327 A~~I~~AV~~~l~~~~~~T~Dl-gG-~-~sT~e~~daV~~~l~~ 367 (376)
|++|++||.+++++| ++|+|| || + +||+||+|+|+++|++
T Consensus 319 A~~Ie~Av~~~l~~g-~~T~Dl~gG~~~~~T~e~~daV~~~l~~ 361 (363)
T 1cnz_A 319 ATAIEQAINRALEEG-VRTGDLARGAAAVSTDEMGDIIARYVAE 361 (363)
T ss_dssp HHHHHHHHHHHHHTT-CCCGGGTTTTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC-CcCcccCCCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999886 999999 78 6 8999999999999953
No 14
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=3.6e-106 Score=808.18 Aligned_cols=322 Identities=31% Similarity=0.472 Sum_probs=298.3
Q ss_pred CCeeeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCC---CChHHHHHHHHhcCeEEEcccccCCC
Q psy559 41 GGRNAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSN---DDLEYAITSIRRNGVAIKGNIETGSL 113 (376)
Q Consensus 41 ~~~~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~---~~~~~~~~~~~~~dail~G~i~~p~~ 113 (376)
.++++|++|||||||||||+++++||+++ +++|+|+++++|..++++ ..|++++++|+++|++||||+++|.+
T Consensus 40 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~ 119 (405)
T 3r8w_A 40 KKRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKW 119 (405)
T ss_dssp -CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGG
T ss_pred CCCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCc
Confidence 46799999999999999999999999997 689999999999988754 34999999999999999999999954
Q ss_pred C------c--hhhHHHhhhhcccEee-----ccccc--ccC-----CCCccEEEEccCCcceeeccccccc-----CceE
Q psy559 114 D------S--LWTLKLCRLILRVIAM-----MILSV--RCR-----QQGIDIVIVRQNTEGEYAMLEHESV-----DGVV 168 (376)
Q Consensus 114 ~------~--~~~~~LR~~~ldLyan-----~~pg~--~~~-----~~~iDivivREnteG~Y~g~e~~~~-----~~va 168 (376)
+ + +.++.|| |+|||||| ++||+ ++| ++++|||||||||||+|+|.++... ++++
T Consensus 120 ~~~~~~~~p~~~ll~LR-k~ldLyaNlRP~k~~~gl~~~splk~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~~~~~~~a 198 (405)
T 3r8w_A 120 DNNEKHLRPEKGLLQIR-AALKVFANLRPATVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVG 198 (405)
T ss_dssp TTSCGGGSHHHHHHHHH-HHHTCCEEEEEEECCGGGGGGSSBCHHHHTTCEEEEEEECSCSTTTCSSCEEEECSSSCEEE
T ss_pred cCCccccCcccchHHHH-HHhCCeEEEEEeeccCCccccCccccccCCCceEEEEeeCCCCeecCCccccccCCCCceEE
Confidence 2 1 2389999 99999999 78998 344 3689999999999999999987542 3478
Q ss_pred EEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCC
Q psy559 169 ESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQ 248 (376)
Q Consensus 169 ~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~ 248 (376)
+++++|||+++|||+|+||+||++| |||||+|||+|||+.+ +||+++|+||+++||||+++|+|||++|||||++|++
T Consensus 199 ~~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNVlk~s-glf~~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~ 276 (405)
T 3r8w_A 199 FNTEVYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLEAS-ILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQ 276 (405)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCHHH-HHHHHHHHHHGGGSTTSEEEEEEHHHHHHHHHHCGGG
T ss_pred EEEEEecHHHHHHHHHHHHHHHHHc-CCeEEEEECchhhccc-cHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhChhh
Confidence 9999999999999999999999976 7999999999999966 9999999999999999999999999999999999999
Q ss_pred ccEEecCCcchhhHhhhhhhhcCCcccccccccCCC-ceeeccCCCCccccccCCCccchhHHHHHHHHHHHH-cCcHHH
Q psy559 249 FDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH-YAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH-LGHMKH 326 (376)
Q Consensus 249 fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~-~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~-lg~~~~ 326 (376)
||||||+|||||||||++|+++||+||+||+|||++ ++|||| +|||||||||||+|||+|+|||++|||+| ||+.++
T Consensus 277 FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~~a~fEp-vHGSAPDIAGk~iANP~A~IlS~amML~~slg~~~~ 355 (405)
T 3r8w_A 277 FDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEP-IHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKA 355 (405)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHSCGGGCEEEEECSSSCCEEEE-SSCCCGGGTTTTCCCCHHHHHHHHHHHHHTTCCTTH
T ss_pred CcEEeecchhhHHHHHHHHHhcCcccccceeeecCCCCeEEec-CCCChhhhCCCCCCCcHHHHHHHHHHHHhhCccHHH
Confidence 999999999999999999999999999999999976 699999 99999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCC--CCC--CCHHHHHHHHHHHHhh
Q psy559 327 ASIIKLAIEKTINEDKIHTPDL--GGT--ATSIDVVQNIIKLVQT 367 (376)
Q Consensus 327 A~~I~~AV~~~l~~~~~~T~Dl--gG~--~sT~e~~daV~~~l~~ 367 (376)
|++|++||.+++++| ++|+|| ||+ +||+||+|+|+++|++
T Consensus 356 A~~Ie~AV~~~l~~G-~~T~Dl~~gG~~~~~T~e~~~aV~~~l~~ 399 (405)
T 3r8w_A 356 AKRIEDAVLVALNNG-FRTGDIYSAGTKLVGCKEMGEEVLKSVDS 399 (405)
T ss_dssp HHHHHHHHHHHHHTT-EECGGGCCTTSEECCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcC-CcCccccCCCCcccCHHHHHHHHHHHHHH
Confidence 999999999999875 999999 999 9999999999999964
No 15
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=8.3e-106 Score=791.89 Aligned_cols=312 Identities=27% Similarity=0.430 Sum_probs=294.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCC---CChHHHHHHHHhcCeEEEcccccCCCC-----c
Q psy559 44 NAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSN---DDLEYAITSIRRNGVAIKGNIETGSLD-----S 115 (376)
Q Consensus 44 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~---~~~~~~~~~~~~~dail~G~i~~p~~~-----~ 115 (376)
++|+||||||||||||+++++||++++.+++|+++++|..++++ ..|++++++|+++|++||||+++|... +
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~~~~~~~~~ 81 (337)
T 1w0d_A 2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPSGVLER 81 (337)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCTTHHHH
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHhcCCcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCCCCCccccc
Confidence 68999999999999999999999999778999999999988754 349999999999999999999999432 3
Q ss_pred hhhHHHhhhhcccEee-----cccccccCCCC---ccEEEEccCCcceeeccccccc----CceEEEeEeecHHHHHHHH
Q psy559 116 LWTLKLCRLILRVIAM-----MILSVRCRQQG---IDIVIVRQNTEGEYAMLEHESV----DGVVESMKIITAANSYRLS 183 (376)
Q Consensus 116 ~~~~~LR~~~ldLyan-----~~pg~~~~~~~---iDivivREnteG~Y~g~e~~~~----~~va~~~~~~Tr~~~eRia 183 (376)
+.++.|| |+|||||| ++||+++++++ +|||||||||||+|+|.+++.. +++++++++|||++++||+
T Consensus 82 s~~l~lR-~~ldlyan~RP~~~~pg~~s~l~~~~~~DivivREnteg~Y~g~e~~~~~g~~~~~a~~~~~~T~~~~eRia 160 (337)
T 1w0d_A 82 GLLLRLR-FELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVV 160 (337)
T ss_dssp HTHHHHH-HHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEESTTSTTCEEEEEEEEEHHHHHHHH
T ss_pred chHHHHH-HHcCCEEEEEEeecCCCCCCcccCCCCCcEEEEecCCCCeecCCcceecCCCCCCeEEEEEEEcHHHHHHHH
Confidence 4599999 99999999 78999988865 9999999999999999987742 4589999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHh
Q psy559 184 KYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITS 263 (376)
Q Consensus 184 r~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILS 263 (376)
|+||+||++| |||||+|||+|||++|||||+++|+||+++||+|+++|+|||++|||||++|++||||||+||||||||
T Consensus 161 r~AFe~A~~r-rkkVt~v~KaNvlk~s~glf~~~~~eva~eyp~i~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlS 239 (337)
T 1w0d_A 161 ADAFERARRR-RKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIIT 239 (337)
T ss_dssp HHHHHHHHHT-TSEEEEEECTTTSHHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHH
T ss_pred HHHHHHHHHc-CCeEEEEECCccchhhhHHHHHHHHHHHHHCCceEEEEEEHHHHHHHHhhCcccccEEEECcchhHHHH
Confidence 9999999998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCcccccccccCC---CceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Q psy559 264 NVICGLIGGAGLISGKNYGD---HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINE 340 (376)
Q Consensus 264 Dlaa~l~GglGl~psanig~---~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~ 340 (376)
|++|+++||+||+||+|+|+ +++|||| +|||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++
T Consensus 240 D~aa~l~GslGl~psanig~~~~~~a~fEp-~HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~ 318 (337)
T 1w0d_A 240 DLAAAVCGGIGLAASGNIDATRANPSMFEP-VHGSAPDIAGQGIADPTAAIMSVALLLSHLGEHDAAARVDRAVEAHLAT 318 (337)
T ss_dssp HHHHHHTTCGGGCEEEEECTTCSSCEEEEE-SSCCCGGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcCCcccCceeEeCCCCCCceEEec-CCCChhhhCCCCCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHc
Confidence 99999999999999999998 5689999 9999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCC-CCCHHHHHHHHHHHH
Q psy559 341 DKIHTPDLGG-TATSIDVVQNIIKLV 365 (376)
Q Consensus 341 ~~~~T~DlgG-~~sT~e~~daV~~~l 365 (376)
| || ++||+||+|+|+++|
T Consensus 319 g-------gg~~~~T~e~~~av~~~l 337 (337)
T 1w0d_A 319 R-------GSERLATSDVGERIAAAL 337 (337)
T ss_dssp C-------TTCCCCHHHHHHHHHHTC
T ss_pred C-------CCCCcCHHHHHHHHHhhC
Confidence 6 77 899999999999864
No 16
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=1.4e-105 Score=811.04 Aligned_cols=322 Identities=27% Similarity=0.366 Sum_probs=299.6
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc-------CCCeeEEEEEccccCCC---C--CChHHHHHHHHhcCeEEEcccc
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA-------GVPVDFETVQIDPKSDS---N--DDLEYAITSIRRNGVAIKGNIE 109 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~-------~~~ie~~~~~~g~~~~~---~--~~~~~~~~~~~~~dail~G~i~ 109 (376)
.+++|+||||||||||||+++++||+++ +++|+|+++++|..+++ . ..|++++++|+++|++||||++
T Consensus 35 ~~~~I~vipGDGIGpEV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~l~G~~~ 114 (427)
T 3dms_A 35 DQPIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLT 114 (427)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCC
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEEEECCCC
Confidence 4789999999999999999999999985 27999999999998763 3 4599999999999999999999
Q ss_pred cCCCC--chhhHHHhhhhcccEee-----cccccccCC---CCccEEEEccCCcceeeccccccc---------------
Q psy559 110 TGSLD--SLWTLKLCRLILRVIAM-----MILSVRCRQ---QGIDIVIVRQNTEGEYAMLEHESV--------------- 164 (376)
Q Consensus 110 ~p~~~--~~~~~~LR~~~ldLyan-----~~pg~~~~~---~~iDivivREnteG~Y~g~e~~~~--------------- 164 (376)
+|.+. ++.|+.|| |+|||||| ++||+++|. +++|||||||||||+|+|.|++..
T Consensus 115 tP~~~~~~s~~l~LR-k~LdLyaNlRPv~~~pg~~splk~~~~vDivIvREnTeG~Y~G~e~~~~~~~~~~~~~~~~~~~ 193 (427)
T 3dms_A 115 TPVGGGIRSLNVALR-QELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIKFLQEEM 193 (427)
T ss_dssp CCC----CCHHHHHH-HHTTCCEEEEEECCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECTTCHHHHHHHHHHHHTS
T ss_pred CCCCcccCChhHHHH-HHhCCeEEEEEeecCCCCCCCCCCCCCceEEEEEECCCCEecCcccccCCcccccccccccccc
Confidence 99653 67799999 99999999 789999886 489999999999999999876431
Q ss_pred --------CceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-hCCC--------
Q psy559 165 --------DGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-EYPE-------- 227 (376)
Q Consensus 165 --------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-eyP~-------- 227 (376)
+++++++++|||+++|||+|+||+||++|+|||||+|||+|||+.|||||+++|+||++ +||+
T Consensus 194 g~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglfr~~~~eva~~eypdv~~~~~~~ 273 (427)
T 3dms_A 194 GVKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPW 273 (427)
T ss_dssp CCCCCSCGGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHCCEESTTSSC
T ss_pred cccccccCCcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCCccccccccc
Confidence 34688999999999999999999999999899999999999999999999999999996 7985
Q ss_pred -----------eeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccCCCCcc
Q psy559 228 -----------IEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTG 296 (376)
Q Consensus 228 -----------I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsA 296 (376)
|+++|+|||++|||||++|++||||||+|||||||||++|+++||+||+||+|||++++|||| +||||
T Consensus 274 ~~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~a~fEp-vHGSA 352 (427)
T 3dms_A 274 MKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFEA-THGTA 352 (427)
T ss_dssp EEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECSSCEEEEE-CSCCC
T ss_pred cccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHHHHHHhcCCccccceeeeCCCcceEEe-ccCCh
Confidence 888999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCCC------CCCHHHHHHHHHHHHh
Q psy559 297 TAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGG------TATSIDVVQNIIKLVQ 366 (376)
Q Consensus 297 pdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~DlgG------~~sT~e~~daV~~~l~ 366 (376)
|||||||+|||+|+|||++|||+|||+.++|++|++||.++|++| ++|+|||| .+||+||+|+|+++|+
T Consensus 353 PdIAGk~iANP~A~IlS~amML~~lg~~~~A~~Ie~AV~~vl~~G-~~T~Dlgg~~~g~~~~~T~e~~daV~~~l~ 427 (427)
T 3dms_A 353 PKYAGKDYVNPGSEILSAEMMLRHLGWTEAADVIISAMEKSIKQK-RVTYDFARLMEGATQVSCSGFGQVLIENME 427 (427)
T ss_dssp GGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-EECHHHHTTSSSCEECCHHHHHHHHHHTTC
T ss_pred hhhcCCCcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC-CcchhhccccCCCCccCHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999886 79999976 5899999999999873
No 17
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=1.5e-105 Score=796.00 Aligned_cols=320 Identities=23% Similarity=0.377 Sum_probs=296.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCCC--
Q psy559 44 NAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSLD-- 114 (376)
Q Consensus 44 ~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~~-- 114 (376)
++|+||||||||||||+++++||+++ +++++|+++++|.++++++ .|++++++|+++|++||||+++|.+.
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~ 81 (358)
T 1a05_A 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAY 81 (358)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccC
Confidence 79999999999999999999999998 7899999999999887543 49999999999999999999999532
Q ss_pred ----ch--hhHHHhhhhcccEee-----cccccc--cCC-----CCccEEEEccCCcceeecccccc----cCceEEEeE
Q psy559 115 ----SL--WTLKLCRLILRVIAM-----MILSVR--CRQ-----QGIDIVIVRQNTEGEYAMLEHES----VDGVVESMK 172 (376)
Q Consensus 115 ----~~--~~~~LR~~~ldLyan-----~~pg~~--~~~-----~~iDivivREnteG~Y~g~e~~~----~~~va~~~~ 172 (376)
++ .+++|| |+|||||| ++||+. ++. +++|||||||||||+|+|.++.. .++++++++
T Consensus 82 ~~~~~~e~~ll~lR-k~ldlyanvRP~~~~pgl~~~splk~~~~~~vDivIvREnteg~Y~g~~~~~~~~~~~~~a~~~~ 160 (358)
T 1a05_A 82 PPAKRPEQGLLRLR-KGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTM 160 (358)
T ss_dssp CGGGSHHHHHHHHH-HHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEEETTEEEEEEEE
T ss_pred CccccchhhHHHHH-HHcCCEEEEEEEEecCCccCCCCCccccCCCceEEEEEecCCCcccCCcCccccCCCCceEEEEE
Confidence 11 289999 99999999 789984 553 57999999999999999986432 135788999
Q ss_pred eecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEE
Q psy559 173 IITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVM 252 (376)
Q Consensus 173 ~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdVi 252 (376)
+|||++++||+|+||+||++| |||||+|||+|||+ +++||+++|+||+++||+|+++|+|||+++||||++|++||||
T Consensus 161 ~~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~vD~~~mqlv~~P~~FDVi 238 (358)
T 1a05_A 161 VYDEDEIRRIAHVAFRAAQGR-RKQLCSVDKANVLE-TTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVL 238 (358)
T ss_dssp EEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSEE
T ss_pred EEcHHHHHHHHHHHHHHHHhc-CCeEEEEECCcccc-cchhHHHHHHHHHHHCCCceEEeeeHHHHHHHHHhCCCcccEE
Confidence 999999999999999999998 89999999999999 7899999999999999999999999999999999999999999
Q ss_pred ecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHH-cCcHHHHHHHH
Q psy559 253 VMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEH-LGHMKHASIIK 331 (376)
Q Consensus 253 V~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~-lg~~~~A~~I~ 331 (376)
||+|||||||||++|+++||+||+||+|+|++++|||| +|||||||||||+|||+|+|||++|||+| ||+.++|++|+
T Consensus 239 vt~NlfGDIlSD~aa~l~GslGl~pSanig~~~~~fEp-vHGSAPdiAGk~iANP~A~IlS~ammL~~~lg~~~~A~~Ie 317 (358)
T 1a05_A 239 LTGNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEP-IHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVE 317 (358)
T ss_dssp EECHHHHHHHHHHHHHTTSCGGGCEEEEECSSCEEEEE-SSCCCGGGTTTTCSCCHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred EecCcccHhHHHHHHhhcCCccccceeeeCCCceeeec-CCCChhHhcCCCccCcHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999988899999 99999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHcCCCCCCCCCC---C-CCHHHHHHHHHHHHhhc
Q psy559 332 LAIEKTINEDKIHTPDLGG---T-ATSIDVVQNIIKLVQTN 368 (376)
Q Consensus 332 ~AV~~~l~~~~~~T~DlgG---~-~sT~e~~daV~~~l~~~ 368 (376)
+||.+++++| ++|+||+| + +||+||+|+|+++|++.
T Consensus 318 ~Av~~~l~~g-~~T~Dl~g~g~~~~~T~e~~daV~~~l~~~ 357 (358)
T 1a05_A 318 AAVQRVLDQG-LRTADIAAPGTPVIGTKAMGAAVVNALNLK 357 (358)
T ss_dssp HHHHHHHHTT-CCCGGGCCTTSCCCCHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHcC-CcCcccccCCCCCcCHHHHHHHHHHHhhcc
Confidence 9999999886 89999943 6 89999999999999653
No 18
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=2.9e-105 Score=805.50 Aligned_cols=322 Identities=29% Similarity=0.447 Sum_probs=299.1
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc-------CCCeeEEEEEccccCCCC---CChHHHHHHHHhcCeEEEcccccC
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA-------GVPVDFETVQIDPKSDSN---DDLEYAITSIRRNGVAIKGNIETG 111 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~-------~~~ie~~~~~~g~~~~~~---~~~~~~~~~~~~~dail~G~i~~p 111 (376)
.+++|++|||||||||||+++++||+++ +++|+|+++++|.+++++ ..|++++++|+++|++||||+++|
T Consensus 23 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP 102 (409)
T 2e0c_A 23 NKPVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLKGPLETP 102 (409)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCC--
T ss_pred CCceEeeCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCC
Confidence 4679999999999999999999999987 389999999999988754 349999999999999999999999
Q ss_pred CC--CchhhHHHhhhhcccEee-----cccccccCCC---CccEEEEccCCcceeecccccc------------------
Q psy559 112 SL--DSLWTLKLCRLILRVIAM-----MILSVRCRQQ---GIDIVIVRQNTEGEYAMLEHES------------------ 163 (376)
Q Consensus 112 ~~--~~~~~~~LR~~~ldLyan-----~~pg~~~~~~---~iDivivREnteG~Y~g~e~~~------------------ 163 (376)
.. .++.|++|| ++|||||| ++||++++.+ ++|||||||||||+|+|.+++.
T Consensus 103 ~~~~~~s~~l~LR-~~LdlyanvRPv~~~~g~~splk~~~~vDivIvREnteg~Y~g~e~~~~~~~~~~v~~f~~~~~~~ 181 (409)
T 2e0c_A 103 IGKGWKSVNVAIR-LMLDLYANIRPVKYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEEAKKIRDFLRKELKV 181 (409)
T ss_dssp ------CHHHHHH-HHTTCCEEEEEEECCTTCCCSBSCCTTCEEEEEEECSSGGGGCCEECTTSHHHHHHHHHHHHHSCC
T ss_pred CcccccChhHHHH-HHcCCEEEEEEEeccCCCCCCCCCccCCcEEEEEcCCCCEeCCcccccCCCcccchhhccchhccc
Confidence 54 256799999 99999999 7899998864 6999999999999999998753
Q ss_pred --cCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-hCCC-------------
Q psy559 164 --VDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-EYPE------------- 227 (376)
Q Consensus 164 --~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-eyP~------------- 227 (376)
.+++++++++||+++++||+|+||+||++|+|||||+|||+|||++|||||+++|+||++ +||+
T Consensus 182 ~~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~~~~~~~~ 261 (409)
T 2e0c_A 182 EIEDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGKP 261 (409)
T ss_dssp CCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHTTTCC
T ss_pred cCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHHHHHHHHHHHHhCCCccccccccccccc
Confidence 236899999999999999999999999999889999999999999999999999999997 9999
Q ss_pred ----eeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccCCCCccccccCCC
Q psy559 228 ----IEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKN 303 (376)
Q Consensus 228 ----I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsApdiaGk~ 303 (376)
|+++|+|||+++||||++|++||||||+|||||||||++|+++||+||+||+|+|++++|||| +|||||||||||
T Consensus 262 ~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~a~fEp-~HGSAPdiAGk~ 340 (409)
T 2e0c_A 262 DQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANIGDEGGMFEA-IHGTAPKYAGKN 340 (409)
T ss_dssp CTTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEETTEEEEEE-SSCCCGGGTTTT
T ss_pred cCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcccCceEEECCCceEEec-CCCChhhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCCC-----CCCHHHHHHHHHHHHh
Q psy559 304 IANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGG-----TATSIDVVQNIIKLVQ 366 (376)
Q Consensus 304 iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~DlgG-----~~sT~e~~daV~~~l~ 366 (376)
+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+|||| .+||+||+|+|+++|+
T Consensus 341 iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~g~~g~~~~~T~e~~daV~~~l~ 407 (409)
T 2e0c_A 341 VANPTGIIKAGELMLRWMGWNEAADLIEKAINMAIRDK-KVTQDIARFMGVKALGTKEYADELIKIMD 407 (409)
T ss_dssp CSCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT-CCCHHHHHHHTSCCCCHHHHHHHHHHHHT
T ss_pred ccCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-CccccccccCCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999886 79999964 6799999999999995
No 19
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.6e-105 Score=805.98 Aligned_cols=322 Identities=30% Similarity=0.429 Sum_probs=303.7
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCC---CChHHHHHHHHhcCeEEEcccccCCC-
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSN---DDLEYAITSIRRNGVAIKGNIETGSL- 113 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~---~~~~~~~~~~~~~dail~G~i~~p~~- 113 (376)
.+++|++|||||||||||+++++||+++ +++|+|+++++|.+++++ ..|++++++|+++|++||||+++|..
T Consensus 26 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~~ 105 (412)
T 2iv0_A 26 DNPIIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVGG 105 (412)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSSS
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCCc
Confidence 3688999999999999999999999998 899999999999988754 34999999999999999999999954
Q ss_pred -CchhhHHHhhhhcccEee-----cccccccCCC---CccEEEEccCCcceeecccccc--------------------c
Q psy559 114 -DSLWTLKLCRLILRVIAM-----MILSVRCRQQ---GIDIVIVRQNTEGEYAMLEHES--------------------V 164 (376)
Q Consensus 114 -~~~~~~~LR~~~ldLyan-----~~pg~~~~~~---~iDivivREnteG~Y~g~e~~~--------------------~ 164 (376)
.++.|++|| ++|||||| ++||++++.+ ++|||||||||||+|+|.++.. .
T Consensus 106 ~~~s~~l~LR-~~Ldlyan~RPv~~~~g~~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~~~~~ 184 (412)
T 2iv0_A 106 GYRSLNVTIR-QVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFLKNEFGVTIR 184 (412)
T ss_dssp SSSHHHHHHH-HHTTCCEEEEEEECCTTSCCSBSCGGGCEEEEEEECSSSGGGCCEECTTCHHHHHHHHHHHHHHCCCCC
T ss_pred cccChhHHHH-HHcCCeEEEEEEEecCCCCCCCCCcCCCCEEEEecCCCCEeCCcccccCCccccchhhcccccccccCC
Confidence 267799999 99999999 7899998875 6999999999999999998653 2
Q ss_pred CceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-hCCC----------------
Q psy559 165 DGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-EYPE---------------- 227 (376)
Q Consensus 165 ~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-eyP~---------------- 227 (376)
+++++++++||+++++||+|+||+||++|+|||||+|||+|||++|+|||+++|+||++ +||+
T Consensus 185 ~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~ 264 (412)
T 2iv0_A 185 EDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQ 264 (412)
T ss_dssp TTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHHHHHHHSTTTEECHHHHHHHHTTCC
T ss_pred CceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhHHHHHHHHHHHHHhCCCccccccchhhhccccc
Confidence 36899999999999999999999999999889999999999999999999999999997 9999
Q ss_pred ----eeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccCCCCccccccCCC
Q psy559 228 ----IEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKN 303 (376)
Q Consensus 228 ----I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsApdiaGk~ 303 (376)
|+++|+|||+++||||++|++||||||+|||||||||++|+++||+||+||+|+|++++|||| +|||||||||||
T Consensus 265 ~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapsanig~~~a~fEp-~HGSAPdiAGk~ 343 (412)
T 2iv0_A 265 PEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIGDGIGVFEP-VHGSAPKYAGQN 343 (412)
T ss_dssp CTTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEEEEETTEEEEEE-SSCCCSTTTTSS
T ss_pred cCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCccccceEEECCCceEEeC-CCCChhhcCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCC---C--CCCHHHHHHHHHHHHh
Q psy559 304 IANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLG---G--TATSIDVVQNIIKLVQ 366 (376)
Q Consensus 304 iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~Dlg---G--~~sT~e~~daV~~~l~ 366 (376)
+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+||| | .+||+||+|+|+++|+
T Consensus 344 iANP~A~IlS~amML~~lg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~~~~G~~~~~T~e~~daV~~~l~ 410 (412)
T 2iv0_A 344 KVNPTAEILTGALMFEYIGWKDASEMIKKAVEMTISSG-IVTYDIHRHMGGTKVGTREFAEAVVENLQ 410 (412)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-EECHHHHHHHCSEECCHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-CcccccccccCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999886 7999996 5 5799999999999996
No 20
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=2.2e-104 Score=803.33 Aligned_cols=327 Identities=29% Similarity=0.419 Sum_probs=306.3
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc-------CCCeeEEEEEccccCCCC---CChHHHHHHHHhcCeEEEcccccC
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA-------GVPVDFETVQIDPKSDSN---DDLEYAITSIRRNGVAIKGNIETG 111 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~-------~~~ie~~~~~~g~~~~~~---~~~~~~~~~~~~~dail~G~i~~p 111 (376)
.+++|++|||||||||||+++++||+++ +++|+|+++++|..++++ ..|++++++|+++|++||||+++|
T Consensus 34 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP 113 (435)
T 1tyo_A 34 DNPVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETP 113 (435)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEECCCCCC
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHHHHHhhcCCCcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEECCccCC
Confidence 5689999999999999999999999987 389999999999988754 349999999999999999999999
Q ss_pred CC--CchhhHHHhhhhcccEee-----cccccccCCC---CccEEEEccCCcceeecccccc------------------
Q psy559 112 SL--DSLWTLKLCRLILRVIAM-----MILSVRCRQQ---GIDIVIVRQNTEGEYAMLEHES------------------ 163 (376)
Q Consensus 112 ~~--~~~~~~~LR~~~ldLyan-----~~pg~~~~~~---~iDivivREnteG~Y~g~e~~~------------------ 163 (376)
.. .++.|++|| ++|||||| ++ |++++.+ ++|||||||||||+|+|.+++.
T Consensus 114 ~~~~~~s~~l~LR-k~LdlyanlRPv~~~-gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~~ 191 (435)
T 1tyo_A 114 VGTGYRSLNVAIR-QALDLYANIRPVRYY-GQPAPHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGI 191 (435)
T ss_dssp TTSCTTHHHHHHH-HHHTCCEEEEEEECC-SCCCSBTTGGGCEEEEEEECSSSGGGCCEECTTSHHHHHHHHHHHHHHCC
T ss_pred CcccccChhHHHH-HHcCCEEEeEEEEec-CCCCCCCCcCCCcEEEEecCCCCeecccccccCCccccceeccchhhccc
Confidence 54 267799999 99999999 67 9988875 6999999999999999998743
Q ss_pred --cCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-hCCC-------------
Q psy559 164 --VDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-EYPE------------- 227 (376)
Q Consensus 164 --~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-eyP~------------- 227 (376)
.+++++++++||+++++||+|+||+||++|+||+||+|||+|||++|||||+++|+||++ +||+
T Consensus 192 ~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~e~~~~~~~~ 271 (435)
T 1tyo_A 192 SIREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYG 271 (435)
T ss_dssp CCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSGGGEEEHHHHHHHST
T ss_pred cCCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCccccccccccccc
Confidence 246899999999999999999999999999889999999999999999999999999997 9999
Q ss_pred -------eeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCceeeccCCCCcccccc
Q psy559 228 -------IEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIA 300 (376)
Q Consensus 228 -------I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsApdia 300 (376)
|+++|+|||+++||||++|++||||||+|||||||||++|+++||+||+||+|||++++|||| +||||||||
T Consensus 272 ~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapSanig~~~a~fEp-vHGSAPdiA 350 (435)
T 1tyo_A 272 GVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMGDGIAVAEP-VHGTAPKYA 350 (435)
T ss_dssp TCCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECSSCEEEEE-SSCCCGGGT
T ss_pred ccccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHHHHHHHhhcCCcccCceeeECCCceeeec-CCCChHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCccchhHHHHHHHHHH-HHcCcHHHHHHHHHHHHHHHHcCCCCCCCCCC------CCCHHHHHHHHHHHHhhccccc
Q psy559 301 GKNIANPIAMLNASVDML-EHLGHMKHASIIKLAIEKTINEDKIHTPDLGG------TATSIDVVQNIIKLVQTNDLRH 372 (376)
Q Consensus 301 Gk~iANP~a~IlS~amML-~~lg~~~~A~~I~~AV~~~l~~~~~~T~DlgG------~~sT~e~~daV~~~l~~~~~~~ 372 (376)
|||+|||+|+|||++||| +|||+.++|++|++||.+++++| .+|+|||| .+||+||+|+|+++|++.+|++
T Consensus 351 Gk~iANP~A~IlS~amML~~hlg~~~~A~~Ie~Av~~~l~~g-~~T~Dlgg~~~g~~~~~T~e~~daV~~~l~~~~~~~ 428 (435)
T 1tyo_A 351 GKDLINPSAEILSASLLIGEFMGWREVKSIVEYAIRKAVQSK-KVTQDLARHMPGVQPLRTSEYTETLIAYIDEADLNE 428 (435)
T ss_dssp TSSCSCCHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHTT-CCBHHHHTTSTTCCCBCHHHHHHHHHHHHHHCCHHH
T ss_pred CCCCcCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcCccccccCCCCCCcCHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999 99999999999999999999886 79999976 5799999999999998776654
No 21
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=7.8e-104 Score=798.13 Aligned_cols=321 Identities=28% Similarity=0.407 Sum_probs=300.6
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc-------CCCeeEEEEEccccCCC---C--CChHHHHHHHHhcCeEEEcccc
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA-------GVPVDFETVQIDPKSDS---N--DDLEYAITSIRRNGVAIKGNIE 109 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~-------~~~ie~~~~~~g~~~~~---~--~~~~~~~~~~~~~dail~G~i~ 109 (376)
.+++|++|||||||||||+++++||+++ +++|+|+++++|..+++ . ..|++++++|+++|++||||++
T Consensus 25 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~lkGav~ 104 (429)
T 2d4v_A 25 DQPIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLE 104 (429)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEEEECCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEEEECCcc
Confidence 4688999999999999999999999987 38999999999988763 3 4589999999999999999999
Q ss_pred cCCC--CchhhHHHhhhhcccEee-----cccccccCCC---CccEEEEccCCcceeecccccc----------------
Q psy559 110 TGSL--DSLWTLKLCRLILRVIAM-----MILSVRCRQQ---GIDIVIVRQNTEGEYAMLEHES---------------- 163 (376)
Q Consensus 110 ~p~~--~~~~~~~LR~~~ldLyan-----~~pg~~~~~~---~iDivivREnteG~Y~g~e~~~---------------- 163 (376)
+|.. .++.|+.|| ++|||||| ++||++++.+ ++|||||||||||+|+|.++..
T Consensus 105 tP~~~~~~s~~l~LR-k~LdLyanvRPv~~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~ 183 (429)
T 2d4v_A 105 TPVGGGIRSLNVAMR-QDLDLYVCLRPVRYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKIIRFLREEM 183 (429)
T ss_dssp CCSSSSSCCHHHHHH-HHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHHHHHTS
T ss_pred CCCcccccChhHHHH-HHcCCEEEEEEEEecCCCCCCCCCcCCCCEEEEEeCCCCeecCcccccCCcccccceecccccc
Confidence 9954 267799999 99999999 7899998864 6999999999999999998653
Q ss_pred -------cCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-hCCC--------
Q psy559 164 -------VDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-EYPE-------- 227 (376)
Q Consensus 164 -------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-eyP~-------- 227 (376)
.+++++++++|||++++||+|+||+||++|+|||||+|||+|||++|||||+++|+||++ +||+
T Consensus 184 ~~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~~~~~ 263 (429)
T 2d4v_A 184 GVTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQK 263 (429)
T ss_dssp CCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHH
T ss_pred ccccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccccccc
Confidence 235899999999999999999999999999889999999999999999999999999997 9999
Q ss_pred ------------------------eeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCC
Q psy559 228 ------------------------IEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGD 283 (376)
Q Consensus 228 ------------------------I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~ 283 (376)
|+++|+|||+++||||++|++||||||+|||||||||++|+++||+||+||+|||+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~NlfGDILSD~aA~l~GslGl~pSanig~ 343 (429)
T 2d4v_A 264 AAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGANLSD 343 (429)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCCCEEECS
T ss_pred ccccccccccccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCcccHHHHHHHHHhcCCHhhcCeeEECC
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCCC------CCCHHHH
Q psy559 284 HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGG------TATSIDV 357 (376)
Q Consensus 284 ~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~DlgG------~~sT~e~ 357 (376)
+++|||| +|||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| .+|+|||| .+||+||
T Consensus 344 ~~a~fEp-vHGSAPdiAGk~iANP~A~IlS~amML~hlg~~~~A~~Ie~Av~~~l~~g-~~T~Dlg~~~~g~~~~~T~e~ 421 (429)
T 2d4v_A 344 THAIFEA-THGTAPDIAGQGKANPSSLILSAVMMLEHLGWGEAAQAIVAAMNATIAAG-EVTGDLAALRGDVPALSTTEF 421 (429)
T ss_dssp SCEEEEC-SCCCCTTTTTTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CEEHHHHTTCTTCCEECHHHH
T ss_pred CceEEec-CCCChhHhcCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CccccccccCCCCCCcCHHHH
Confidence 9999999 99999999999999999999999999999999999999999999999886 79999974 4799999
Q ss_pred HHHHHHHH
Q psy559 358 VQNIIKLV 365 (376)
Q Consensus 358 ~daV~~~l 365 (376)
+|+|+++|
T Consensus 422 ~daV~~~l 429 (429)
T 2d4v_A 422 TAALIRRF 429 (429)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhhC
Confidence 99999764
No 22
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=5e-104 Score=798.89 Aligned_cols=322 Identities=29% Similarity=0.408 Sum_probs=302.0
Q ss_pred CeeeEEEEcCCCCCHHHHHHHHHHHHHc-------CCCeeEEEEEccccCCCC---CChHHHHHHHHhcCeEEEcccccC
Q psy559 42 GRNAVTMLPGGGIGPELMSYVKEVFRYA-------GVPVDFETVQIDPKSDSN---DDLEYAITSIRRNGVAIKGNIETG 111 (376)
Q Consensus 42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~-------~~~ie~~~~~~g~~~~~~---~~~~~~~~~~~~~dail~G~i~~p 111 (376)
.+++|++|||||||||||+++++||+++ +++|+|+++++|..++++ ..|++++++|+++|++||||+++|
T Consensus 18 ~~~~I~vipGDGIGpEI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lkGav~tP 97 (423)
T 1hqs_A 18 NNPIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTP 97 (423)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCC
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEECCccCC
Confidence 3689999999999999999999999987 289999999999988754 349999999999999999999999
Q ss_pred CC--CchhhHHHhhhhcccEee-----cccccccCCC---CccEEEEccCCcceeecccccc------------------
Q psy559 112 SL--DSLWTLKLCRLILRVIAM-----MILSVRCRQQ---GIDIVIVRQNTEGEYAMLEHES------------------ 163 (376)
Q Consensus 112 ~~--~~~~~~~LR~~~ldLyan-----~~pg~~~~~~---~iDivivREnteG~Y~g~e~~~------------------ 163 (376)
.. .++.|+.|| ++|||||| ++||++++.+ ++|||||||||||+|+|.++..
T Consensus 98 ~~~~~~s~nl~LR-k~LdlyanvRPv~~~pg~~splk~~~~vDivIvREnteg~Y~G~e~~~g~~~~~~v~~~~~~~~~~ 176 (423)
T 1hqs_A 98 VGGGIRSLNVALR-QELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNV 176 (423)
T ss_dssp SSSSSCCHHHHHH-HHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHHHHHHSCC
T ss_pred CCcCcCChhHHHH-HHcCCEEEEEEEeccCCCCCCCCCCCCCcEEEEecCCCCeecccccccCCccccceeccccccccc
Confidence 54 267799999 99999999 7899998864 6999999999999999998652
Q ss_pred -----cCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-hCCC----------
Q psy559 164 -----VDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-EYPE---------- 227 (376)
Q Consensus 164 -----~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-eyP~---------- 227 (376)
.+++++++++||+++++||+|+||+||++|+||+||+|||+|||++|+|+|+++|+||++ +||+
T Consensus 177 ~~~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~ 256 (423)
T 1hqs_A 177 NKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDR 256 (423)
T ss_dssp CCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHGGGEEEHHHHHH
T ss_pred cccccCCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccchhhhcc
Confidence 236899999999999999999999999999899999999999999999999999999997 9999
Q ss_pred ----------------------eeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccC--C
Q psy559 228 ----------------------IEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYG--D 283 (376)
Q Consensus 228 ----------------------I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig--~ 283 (376)
|+++|+|||+++||||++|++||||||+|||||||||++|+++||+||+||+||| +
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGl~pSanigp~~ 336 (423)
T 1hqs_A 257 IAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYET 336 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECTTT
T ss_pred ccccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEEEECCcchHHHHHHHHhhcCCcccCccceecCCC
Confidence 8899999999999999999999999999999999999999999999999999999 7
Q ss_pred CceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCCC------CCCHHHH
Q psy559 284 HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGG------TATSIDV 357 (376)
Q Consensus 284 ~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~DlgG------~~sT~e~ 357 (376)
+++|||| +|||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+|||| .+||+||
T Consensus 337 ~~alfEp-~HGSAPdiAGk~iANP~A~IlS~amML~hlg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~g~~~g~~~~~T~e~ 414 (423)
T 1hqs_A 337 GHAIFEA-THGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNEAADLVIKSMEKTIASK-VVTYDFARLMDGATEVKCSEF 414 (423)
T ss_dssp CCEEEEE-SCCCCGGGTTTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT-EECHHHHTTSSSCEECCHHHH
T ss_pred CceEEec-CCCChhhhCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCHHHH
Confidence 7899999 99999999999999999999999999999999999999999999999886 89999976 6899999
Q ss_pred HHHHHHHHh
Q psy559 358 VQNIIKLVQ 366 (376)
Q Consensus 358 ~daV~~~l~ 366 (376)
+|+|+++|+
T Consensus 415 ~daV~~~l~ 423 (423)
T 1hqs_A 415 GEELIKNMD 423 (423)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHhhC
Confidence 999999873
No 23
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=9.3e-99 Score=761.26 Aligned_cols=320 Identities=19% Similarity=0.201 Sum_probs=294.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCCC------
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSL------ 113 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~~------ 113 (376)
+++|++|||||||||||+++++||++.+++|+|+++++|.+++++++ |++++++|+++|++||||+++|.+
T Consensus 30 ~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e~ 109 (427)
T 3us8_A 30 ANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDEGRVEEF 109 (427)
T ss_dssp CSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHH
T ss_pred cceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCccccccc
Confidence 57899999999999999999999999999999999999998876654 899999999999999999999964
Q ss_pred -----CchhhHHHhhhhcccEee----cccccccCCC--CccEEEEccCCcceeeccccccc------------------
Q psy559 114 -----DSLWTLKLCRLILRVIAM----MILSVRCRQQ--GIDIVIVRQNTEGEYAMLEHESV------------------ 164 (376)
Q Consensus 114 -----~~~~~~~LR~~~ldLyan----~~pg~~~~~~--~iDivivREnteG~Y~g~e~~~~------------------ 164 (376)
.+++|++|| ++|||||| ++++++++.+ ++|+|||||||||+|+|.|+...
T Consensus 110 ~l~~~~~s~n~~LR-k~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~~G~~~~ 188 (427)
T 3us8_A 110 KLKKMWKSPNGTIR-NILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGEDGQTIE 188 (427)
T ss_dssp TCSSCCCCHHHHHH-HHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTSCEEE
T ss_pred cccccccCchHHHH-HHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeecccccccc
Confidence 146699999 99999999 3578876543 59999999999999999876542
Q ss_pred --------CceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-hCC------Cee
Q psy559 165 --------DGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-EYP------EIE 229 (376)
Q Consensus 165 --------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-eyP------~I~ 229 (376)
++++ +..+||+++++||+|+||+||++| +||||+|||+|||+.|||||+++|+||++ +|| +|+
T Consensus 189 ~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r-~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~~~~I~ 266 (427)
T 3us8_A 189 HDVYDAPGAGVA-LAMYNLDESITEFARASFNYGLQR-KVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAEKLW 266 (427)
T ss_dssp EEEEEESSCEEE-EEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHTTCC
T ss_pred ccccccCCCcEE-EEEeeCHHHHHHHHHHHHHHHHHc-CCcEEEEECcccchhhhhHHHHHHHHHHHHhCccccCCCCeE
Confidence 2344 567889999999999999999998 58899999999999999999999999998 996 999
Q ss_pred eeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCc--eeeccCCCCcccc-----ccCC
Q psy559 230 HNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHY--AVFEPGTRNTGTA-----IAGK 302 (376)
Q Consensus 230 ~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~~HGsApd-----iaGk 302 (376)
++|++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|||++. ++||| +|||||| ||||
T Consensus 267 ~~~~~VD~~~mqlv~~P~~F-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp-~HGSAPd~~~~~iAGk 344 (427)
T 3us8_A 267 YEHRLIDDMVASALKWSGGY-VWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEA-AHGTVTRHYRQHQKGE 344 (427)
T ss_dssp EEEEEHHHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEEC-CSCCCHHHHHHHHTTC
T ss_pred EEEEEHHHHHHHHhhCCCCc-EEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeC-CCCCcCCccchhcCCC
Confidence 99999999999999999999 99999999999999999999999999999999865 99999 9999999 9999
Q ss_pred Cc-cchhHHHHHHHHHHHHcCc-------HHHHHHHHHHHHHHHHcCCCCCCCCCC-------CCCHHHHHHHHHHHHhh
Q psy559 303 NI-ANPIAMLNASVDMLEHLGH-------MKHASIIKLAIEKTINEDKIHTPDLGG-------TATSIDVVQNIIKLVQT 367 (376)
Q Consensus 303 ~i-ANP~a~IlS~amML~~lg~-------~~~A~~I~~AV~~~l~~~~~~T~DlgG-------~~sT~e~~daV~~~l~~ 367 (376)
|+ |||+|+|||++|||+|||+ .++|++|++||.+++++| ++|+|||| .+||+||+|+|+++|++
T Consensus 345 ~i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g-~~T~Dlgg~~~~~~~~~~T~e~~daV~~~l~~ 423 (427)
T 3us8_A 345 ETSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESG-FMTKDLALLIGPDQPWLSTTGFLDKIDENLRK 423 (427)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-CCBHHHHHHHCTTCCCBCHHHHHHHHHHHHHH
T ss_pred CceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHcC-CcCcccccccccCCcccCHHHHHHHHHHHHHH
Confidence 98 9999999999999999997 789999999999999876 89999988 68999999999999964
Q ss_pred c
Q psy559 368 N 368 (376)
Q Consensus 368 ~ 368 (376)
.
T Consensus 424 ~ 424 (427)
T 3us8_A 424 A 424 (427)
T ss_dssp H
T ss_pred H
Confidence 3
No 24
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=5.1e-98 Score=752.64 Aligned_cols=320 Identities=18% Similarity=0.195 Sum_probs=292.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCCC------
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSL------ 113 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~~------ 113 (376)
+++|++||||||||||+++++++|++++++++|+++++|.+++++++ |++++++|+++|++||||+++|.+
T Consensus 6 ~~~i~~i~GDgig~ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~~~~~ 85 (402)
T 2uxq_A 6 KTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEEY 85 (402)
T ss_dssp SSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHH
T ss_pred ecceEEecCCCccHHHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCcccCccc
Confidence 47899999999999999999999999999999999999998886654 899999999999999999999962
Q ss_pred -----CchhhHHHhhhhcccEee----cccccccCC--CCccEEEEccCCcceeeccccccc------------------
Q psy559 114 -----DSLWTLKLCRLILRVIAM----MILSVRCRQ--QGIDIVIVRQNTEGEYAMLEHESV------------------ 164 (376)
Q Consensus 114 -----~~~~~~~LR~~~ldLyan----~~pg~~~~~--~~iDivivREnteG~Y~g~e~~~~------------------ 164 (376)
.++.|++|| ++|||||| .+|+++++. .++|||||||||||+|+|.++...
T Consensus 86 ~~~~~~~s~~l~LR-~~ldlyan~RPv~~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~ 164 (402)
T 2uxq_A 86 GLKEQWKSPNATVR-AMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGKETR 164 (402)
T ss_dssp TCSSCCCCHHHHHH-HHHCCEEEEEECCCTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTSCEEE
T ss_pred cccccccCchHHHH-HHhCCeEEEEEEEcCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeeccCCcccc
Confidence 145699999 99999999 367887765 359999999999999998765430
Q ss_pred -------CceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHH-hhCCC------eee
Q psy559 165 -------DGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVA-KEYPE------IEH 230 (376)
Q Consensus 165 -------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva-~eyP~------I~~ 230 (376)
...+....++|+++++||+|+||+||++| ++|||+|||+|||+.|||||+++|+||+ ++||+ |++
T Consensus 165 ~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~I~~ 243 (402)
T 2uxq_A 165 QTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQ-KIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGIEY 243 (402)
T ss_dssp EEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHTCCE
T ss_pred ccccccCCCceEEEEEECHHHHHHHHHHHHHHHHHc-CCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCCeEEE
Confidence 12345556799999999999999999998 6789999999999999999999999999 79999 999
Q ss_pred eeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCc-eeeccCCCCccccc-----cCCCc
Q psy559 231 NDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHY-AVFEPGTRNTGTAI-----AGKNI 304 (376)
Q Consensus 231 e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~-a~FEp~~HGsApdi-----aGk~i 304 (376)
+|+|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. +|||| +||||||| ||||+
T Consensus 244 ~~~~vD~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~lfEp-vHGSAPdi~~~~~aGk~~ 321 (402)
T 2uxq_A 244 FYTLIDDVVARMMKTEGGM-LWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYGYFEYEA-AHGTVQRHYYQHLKGERT 321 (402)
T ss_dssp EEEEHHHHHHHHTTCCCCS-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCEEEEC-CSCCCHHHHHHHHTTCCC
T ss_pred EEEEHHHHHHHHccCCCce-EEEEcccchHHHHHHHHHhcCCccccccceecCCCCeEEeC-CCCChhhhhhhhhcCCCc
Confidence 9999999999999999999 99999999999999999999999999999999876 89999 99999998 89996
Q ss_pred -cchhHHHHHHHHHHHHcCcHH-------HHHHHHHHHHHHHHcCCCCCCCCCC--------CCCHHHHHHHHHHHHhh
Q psy559 305 -ANPIAMLNASVDMLEHLGHMK-------HASIIKLAIEKTINEDKIHTPDLGG--------TATSIDVVQNIIKLVQT 367 (376)
Q Consensus 305 -ANP~a~IlS~amML~~lg~~~-------~A~~I~~AV~~~l~~~~~~T~DlgG--------~~sT~e~~daV~~~l~~ 367 (376)
|||+|+|||++|||+|||+.+ +|++|++||.+++++| ++|+|||| .+||+||+|+|+++|++
T Consensus 322 ~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G-~~T~Dlgg~~~g~~~~~~~T~e~~daI~~~l~~ 399 (402)
T 2uxq_A 322 STNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESG-YMTGDLARICEPAAIKVLDSIEFIDELGKRLQQ 399 (402)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-EECHHHHTTCSSCCSEECCHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcC-CcCccccccCCCCCCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999999765 7999999999999886 89999976 58999999999999954
No 25
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=4e-96 Score=741.09 Aligned_cols=321 Identities=20% Similarity=0.205 Sum_probs=291.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCCC------
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSL------ 113 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~~------ 113 (376)
+++|++|||||||||||++++++|.+.+++++|+++++|.+++++++ |++++++|+++|++||||+++|.+
T Consensus 8 ~~~i~~l~GDgiGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~~~~~~~~ 87 (413)
T 1lwd_A 8 AKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEF 87 (413)
T ss_dssp SSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHH
T ss_pred cccEEEecCCChhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCCcccCccc
Confidence 36799999999999999999999998899999999999998886654 899999999999999999999963
Q ss_pred -----CchhhHHHhhhhcccEee----cccccccCC--CCccEEEEccCCcceeeccccccc------------------
Q psy559 114 -----DSLWTLKLCRLILRVIAM----MILSVRCRQ--QGIDIVIVRQNTEGEYAMLEHESV------------------ 164 (376)
Q Consensus 114 -----~~~~~~~LR~~~ldLyan----~~pg~~~~~--~~iDivivREnteG~Y~g~e~~~~------------------ 164 (376)
.++.|+.|| ++|||||| .+|+++++. ..+|++|+||||||+|+|.++...
T Consensus 88 ~~~~~~~s~~l~LR-~~ldlyan~RPv~~~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~~g~~~~ 166 (413)
T 1lwd_A 88 KLKKMWKSPNGTIR-NILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAK 166 (413)
T ss_dssp TCSSCCCCHHHHHH-HHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTCCCCE
T ss_pred cccccccCccHHHH-HhcCCEEEEeeeeccCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEeccCCcccc
Confidence 135699999 99999999 246776554 369999999999999997643320
Q ss_pred --------CceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHH-hhCCC------ee
Q psy559 165 --------DGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVA-KEYPE------IE 229 (376)
Q Consensus 165 --------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva-~eyP~------I~ 229 (376)
.+.+....+||+++++||+|+||+||++| ++|||+|||+|||++|||||+++|+||+ ++||+ |+
T Consensus 167 ~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~I~ 245 (413)
T 1lwd_A 167 QWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQK-KWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIW 245 (413)
T ss_dssp EEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHTTCC
T ss_pred cccccccCCCcEEEEEEEcHHHHHHHHHHHHHHHHHh-CCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcccCCeEE
Confidence 13456667999999999999999999998 6889999999999999999999999999 79999 99
Q ss_pred eeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCc--eeeccCCCCccccc-----cCC
Q psy559 230 HNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHY--AVFEPGTRNTGTAI-----AGK 302 (376)
Q Consensus 230 ~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~~HGsApdi-----aGk 302 (376)
++|+|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|||++. +|||| +||||||| |||
T Consensus 246 ~~~~~VD~~~mqlv~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEp-vHGSAPdi~~~~~aGk 323 (413)
T 1lwd_A 246 YEHRLIDDMVAQVLKSSGGF-VWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEA-AHGTVTRHYREHQKGR 323 (413)
T ss_dssp EEEEEHHHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEEC-CSCCCHHHHHHHHTTC
T ss_pred EEEEEHHHHHHHHhcCCCce-EEEecccccchHHHHHHhhcCCccccccceeCCCCCceEEeC-CCCChhhhhhhhhcCC
Confidence 99999999999999999999 99999999999999999999999999999999865 89999 99999999 999
Q ss_pred Cc-cchhHHHHHHHHHHHHcCcHH-------HHHHHHHHHHHHHHcCCCCCCCCC----C---------CCCHHHHHHHH
Q psy559 303 NI-ANPIAMLNASVDMLEHLGHMK-------HASIIKLAIEKTINEDKIHTPDLG----G---------TATSIDVVQNI 361 (376)
Q Consensus 303 ~i-ANP~a~IlS~amML~~lg~~~-------~A~~I~~AV~~~l~~~~~~T~Dlg----G---------~~sT~e~~daV 361 (376)
|+ |||+|+|||++|||+|||+.+ +|++|++||.+++++| ++|+||| | .+||+||+|+|
T Consensus 324 ~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~~~~T~e~~daV 402 (413)
T 1lwd_A 324 PTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESG-AMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTI 402 (413)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHCTTSCCBTTTBCCHHHHHHHH
T ss_pred CCccChHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHHcC-CcCcccccccCCcccccccCCCCCHHHHHHHH
Confidence 97 999999999999999999874 8999999999999886 8999996 5 57999999999
Q ss_pred HHHHhhc
Q psy559 362 IKLVQTN 368 (376)
Q Consensus 362 ~~~l~~~ 368 (376)
+++|++.
T Consensus 403 ~~~l~~~ 409 (413)
T 1lwd_A 403 KSNLDRA 409 (413)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999643
No 26
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-95 Score=732.73 Aligned_cols=320 Identities=19% Similarity=0.210 Sum_probs=290.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCCC------
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSL------ 113 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~~------ 113 (376)
+++|++||||||||||+++++++|++++++++|+++++|.+++++++ |++++++|+++|++||||+++|.+
T Consensus 7 ~~~I~~l~GDgiG~ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~~~~~~~ 86 (399)
T 1zor_A 7 KNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAERVKEY 86 (399)
T ss_dssp CSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHH
T ss_pred cccEEEecCCcccHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCcccCccc
Confidence 45799999999999999999999999999999999999998886654 899999999999999999999962
Q ss_pred -----CchhhHHHhhhhcccEee----cccccccCCC--CccEEEEccCCcceeecccccc----------c--------
Q psy559 114 -----DSLWTLKLCRLILRVIAM----MILSVRCRQQ--GIDIVIVRQNTEGEYAMLEHES----------V-------- 164 (376)
Q Consensus 114 -----~~~~~~~LR~~~ldLyan----~~pg~~~~~~--~iDivivREnteG~Y~g~e~~~----------~-------- 164 (376)
.++.|++|| ++||||+| .+|+++++.+ .+|++|+||||||+|+|.++.. .
T Consensus 87 ~~~~~~~s~~l~LR-~~ldlyan~RPv~~~~~~~~~~~~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y~~e~~~~~~ 165 (399)
T 1zor_A 87 NLKKAWKSPNATIR-AYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKENKTLL 165 (399)
T ss_dssp TCSSCCCCHHHHHH-HHHTCEEEEEECCBTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESSSCEEEE
T ss_pred cccccccCchHHHH-HHhCCEEEEEEeecCCCCCcccCcCccceeeecccCCCcCCceeEecCCCcceeeEeccccccce
Confidence 145699999 99999999 4678776543 5999999999999999876311 0
Q ss_pred -----CceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh----hCCC--eeeeee
Q psy559 165 -----DGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK----EYPE--IEHNDM 233 (376)
Q Consensus 165 -----~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~----eyP~--I~~e~~ 233 (376)
.+.+....++|+++++||+|+||+||++| ++|||+|||+|||++|||||+++|+||++ +||+ |+++|+
T Consensus 166 ~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNvlk~sdglf~~~~~eva~~~~~~yp~~~I~~~~~ 244 (399)
T 1zor_A 166 VHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISE-KVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEELEKAGVNYRYM 244 (399)
T ss_dssp EEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHHHHHTTCCEEEE
T ss_pred eeccCCceEEEEEEecHHHHHHHHHHHHHHHHHh-CCeEEEEECcccHHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEE
Confidence 12455556899999999999999999998 57899999999999999999999999987 9995 999999
Q ss_pred eHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCc-eeeccCCCCcccc-----ccCCCc-cc
Q psy559 234 IIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHY-AVFEPGTRNTGTA-----IAGKNI-AN 306 (376)
Q Consensus 234 ~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~-a~FEp~~HGsApd-----iaGk~i-AN 306 (376)
|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|||++. +|||| +|||||| |||||+ ||
T Consensus 245 ~vD~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~~fEp-vHGSAPdi~~~~iaGk~~~AN 322 (399)
T 1zor_A 245 LIDDAAAQILRSEGGM-LWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDGVYEFEA-AHGTVRRHYYRYLKGEKTSTN 322 (399)
T ss_dssp EHHHHHHHHHHSCCCS-EEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTCCEEEEE-SSCCCHHHHHHHTTTCCCCCC
T ss_pred EHHHHHHHhccCCCce-EEEEccchHHHHHHHHHHhcCCccccceeEecCCCCeEEeC-CCCcccccchhhhcCCCCccC
Confidence 9999999999999999 99999999999999999999999999999999876 89999 9999999 799996 99
Q ss_pred hhHHHHHHHHHHHHcCcH-------HHHHHHHHHHHHHHHcCCCCCCCCCC--------CCCHHHHHHHHHHHHhh
Q psy559 307 PIAMLNASVDMLEHLGHM-------KHASIIKLAIEKTINEDKIHTPDLGG--------TATSIDVVQNIIKLVQT 367 (376)
Q Consensus 307 P~a~IlS~amML~~lg~~-------~~A~~I~~AV~~~l~~~~~~T~DlgG--------~~sT~e~~daV~~~l~~ 367 (376)
|+|+|||++|||+|||+. ++|++|++||.+++++| ++|+|||| .+||+||+|+|+++|++
T Consensus 323 P~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~g-~~T~Dlgg~~~g~~~~~~~T~e~~daV~~~l~~ 397 (399)
T 1zor_A 323 PTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESG-VITKDLQPFTEPPIDKYVTLEEFIDEVKKNLEK 397 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-CCCGGGGGGCSSCCCCCCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHcC-CcCccccccCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999965 57999999999999886 89999975 38999999999999953
No 27
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=1.6e-94 Score=725.51 Aligned_cols=321 Identities=18% Similarity=0.199 Sum_probs=277.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCCC------
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSL------ 113 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~~------ 113 (376)
+++|++|||||||||++++.++++++.+++++|+++++|.+++++++ |++++++|+++|++||||+++|.+
T Consensus 7 ~~~i~~i~GDei~~e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~~~~~~~ 86 (402)
T 4aoy_A 7 KVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQRVEEY 86 (402)
T ss_dssp SSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHT
T ss_pred cCcEEEECCCchHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCccccccc
Confidence 47899999999999999999999999999999999999998876543 899999999999999999999963
Q ss_pred -----CchhhHHHhhhhcccEee----cccccccCCC--CccEEEEccCCcceeeccccccc------------------
Q psy559 114 -----DSLWTLKLCRLILRVIAM----MILSVRCRQQ--GIDIVIVRQNTEGEYAMLEHESV------------------ 164 (376)
Q Consensus 114 -----~~~~~~~LR~~~ldLyan----~~pg~~~~~~--~iDivivREnteG~Y~g~e~~~~------------------ 164 (376)
.+++|++|| +.||||+| ++||++++.+ ++|||||||||||+|+|.|++..
T Consensus 87 ~l~~~~~s~n~~LR-~~Ldlyan~rPv~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~g~~~~ 165 (402)
T 4aoy_A 87 NLKKMWKSPNGTIR-AILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENGEVSR 165 (402)
T ss_dssp TCSSCCCCHHHHHH-HHHTCEEEEEECCCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETTSCEEE
T ss_pred cccccccChHHHHH-HHhCCeEEeeeEeccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccCCcccc
Confidence 256799999 99999999 6799988765 69999999999999999987642
Q ss_pred -------CceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHh-hCC------Ceee
Q psy559 165 -------DGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAK-EYP------EIEH 230 (376)
Q Consensus 165 -------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~-eyP------~I~~ 230 (376)
...+.+...+|+++++||+|+||+||++|+ ++||+|||+|||+.|||+|+++|+||++ +|| +|++
T Consensus 166 ~~~~~~~~~gv~~~~~~t~~~~eRiar~AF~~A~~~~-~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~~~~i~~ 244 (402)
T 4aoy_A 166 QTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMN-QDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAKNLQY 244 (402)
T ss_dssp EEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHT-CCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHHHTTCCE
T ss_pred cccccccCCeeEEEEEecHHHHHHHHHHHHHHHHHcC-CcEEEEECCccchhhhhHHHHHHHHHHHHhCcccccCCCeEE
Confidence 112455677889999999999999999984 8999999999999999999999999987 998 9999
Q ss_pred eeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCC-ceeeccCCCCcccc-----ccCCCc
Q psy559 231 NDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH-YAVFEPGTRNTGTA-----IAGKNI 304 (376)
Q Consensus 231 e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~-~a~FEp~~HGsApd-----iaGk~i 304 (376)
+|++||+++||||++|++| ||||+|||||||||++|+++||+||+||+|+|++ .++||| +|||||| |+||++
T Consensus 245 ~~~~vD~~~~~lv~~P~~f-Vivt~Nl~GDIlSD~~A~l~GslGl~psanig~~~~~~fEp-~HGSApd~~~~~iaGk~~ 322 (402)
T 4aoy_A 245 FYTLIDDAVARIIRSEGGM-VWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGKYEFEA-AHGTVTRHYYKHLKGEET 322 (402)
T ss_dssp EEEEHHHHHHHHHTSCBCS-EEECCC-CHHHHHHHHHHHHSCTTSEEEEEECTTCCEEEEC------------------C
T ss_pred EEEEHHHHHHHHhhCCCCc-EEEECCcchHHHHHHHHHhcCchhhccccccCCCCceEEee-ccCCccccchhhccCCCc
Confidence 9999999999999999999 9999999999999999999999999999999975 699999 9999999 899998
Q ss_pred -cchhHHHHHHHHHHHHcCc-------HHHHHHHHHHHHHHHHcCCCCCCCCCCCC--------CHHHHHHHHHHHHhhc
Q psy559 305 -ANPIAMLNASVDMLEHLGH-------MKHASIIKLAIEKTINEDKIHTPDLGGTA--------TSIDVVQNIIKLVQTN 368 (376)
Q Consensus 305 -ANP~a~IlS~amML~~lg~-------~~~A~~I~~AV~~~l~~~~~~T~DlgG~~--------sT~e~~daV~~~l~~~ 368 (376)
|||+|+|||++|||+|+|+ .++|++|++||.+++++| ++|+||||.+ ||+||+|+|+++|++.
T Consensus 323 ~aNP~A~Ils~a~mL~~~g~~~~~~~l~~~A~~ie~Av~~~l~~g-~~T~Dlgg~~~~~~~~~~~T~ef~~av~~~l~~~ 401 (402)
T 4aoy_A 323 STNSMATIFAWTGALKKRGELDGIKELVDFATKLEQASVQTIENG-VMTKDLASLSEVPEKKIVNTEDFLKEIRKTFEGM 401 (402)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT-EEEHHHHTTCCCSCCEEECHHHHHHHHHHHHTTC
T ss_pred CcCcHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHcC-CCCcccccccccCCCCCcCHHHHHHHHHHHHhhh
Confidence 9999999999999999986 589999999999999876 8999999876 9999999999999753
No 28
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=1.8e-93 Score=724.06 Aligned_cols=319 Identities=21% Similarity=0.205 Sum_probs=285.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCCC------
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSL------ 113 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~~------ 113 (376)
+++|++||||||||||++++.+.+...+++|+|+++++|.+++++++ |++++++|+++|++||||+++|..
T Consensus 22 ~~~I~~l~GDgig~evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP~~~~~~e~ 101 (427)
T 2qfy_A 22 KQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEARVKEF 101 (427)
T ss_dssp SSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHT
T ss_pred eeeEEEecCCCHHHHHHHHHHHHhccCCCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCCCCcccchh
Confidence 47899999999999999999988776688999999999999887654 899999999999999999999952
Q ss_pred -----CchhhHHHhhhhcccEee-------ccc----ccccC-----------CCCccEEEEccCCcceee------ccc
Q psy559 114 -----DSLWTLKLCRLILRVIAM-------MIL----SVRCR-----------QQGIDIVIVRQNTEGEYA------MLE 160 (376)
Q Consensus 114 -----~~~~~~~LR~~~ldLyan-------~~p----g~~~~-----------~~~iDivivREnteG~Y~------g~e 160 (376)
.++.|+.|| +.||||+| .+| |++++ ++++|++||||||||+|+ |.+
T Consensus 102 ~l~~~~~s~~~~lR-~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnteg~Y~~~e~teG~~ 180 (427)
T 2qfy_A 102 NLHKMWKSPNGTIR-NILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQ 180 (427)
T ss_dssp TCSSCCCCHHHHHH-HHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEEEEEEEEESCTTTSC
T ss_pred hhcccccchHHHHH-HhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCccceeeeccccCCcc
Confidence 234589999 99999999 154 43433 367999999999999999 421
Q ss_pred ---ccc----cCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHH-hhCCC-----
Q psy559 161 ---HES----VDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVA-KEYPE----- 227 (376)
Q Consensus 161 ---~~~----~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva-~eyP~----- 227 (376)
+.. .++++.. .++|+++++||+|+||+||++| ++|||+|||+|||+.|||||+++|+||+ ++||+
T Consensus 181 ~~~~~~~~~~~~~v~~~-~~~T~~~ieRIar~AFe~A~~r-~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd~~~~~ 258 (427)
T 2qfy_A 181 PQTLKVYDYKGSGVAMA-MYNTDESIEGFAHSSFKLAIDK-KLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQL 258 (427)
T ss_dssp CEEEEEEEESSCEEEEE-EEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccccccCCCceEEEE-EEEcHHHHHHHHHHHHHHHHHh-CCceEEEECCccchhhhHHHHHHHHHHHHHhCCCcccCC
Confidence 111 1334443 5899999999999999999998 6789999999999999999999999998 89999
Q ss_pred -eeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCCc--eeeccCCCCccc-----cc
Q psy559 228 -IEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHY--AVFEPGTRNTGT-----AI 299 (376)
Q Consensus 228 -I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~~HGsAp-----di 299 (376)
|+++|+|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|||++. ++||| +||||| ||
T Consensus 259 ~I~~e~~~VD~~amqlV~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEp-vHGSAPdi~~~di 336 (427)
T 2qfy_A 259 GIHYEHRLIDDMVAQMIKSKGGF-IMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEA-AHGTVTRHYRKYQ 336 (427)
T ss_dssp TCCEEEEEHHHHHHHHHHSCEEE-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEEC-CSCCCHHHHHHHH
T ss_pred eEEEEEEEHHHHHHHHHhCCCce-EEEECccchHHHHHHHHHhcCcccccceeEeCCCCceeEecC-CCCCcccccchhh
Confidence 9999999999999999999999 99999999999999999999999999999999876 89999 999999 78
Q ss_pred cCCCc-cchhHHHHHHHHHHHHcCcH-------HHHHHHHHHHHHHHH-cCCCCCCCCCC---------CCCHHHHHHHH
Q psy559 300 AGKNI-ANPIAMLNASVDMLEHLGHM-------KHASIIKLAIEKTIN-EDKIHTPDLGG---------TATSIDVVQNI 361 (376)
Q Consensus 300 aGk~i-ANP~a~IlS~amML~~lg~~-------~~A~~I~~AV~~~l~-~~~~~T~DlgG---------~~sT~e~~daV 361 (376)
||||+ |||+|+|||++|||+|||+. ++|++|++||.++++ +| ++|+|||| .+||+||+|+|
T Consensus 337 AGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~~G-~~T~Dlgg~~g~~~~~~~~~T~e~~daV 415 (427)
T 2qfy_A 337 KGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDG-IMTKDLALACGNNERSAYVTTEEFLDAV 415 (427)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHTTCCSGGGCCCHHHHHHHH
T ss_pred cCCCCccCcHHHHHHHHHHHHHhCcccCcchhHHHHHHHHHHHHHHHHhCC-CccccccccCCccccCCCCCHHHHHHHH
Confidence 99995 99999999999999999976 899999999999998 76 89999974 47999999999
Q ss_pred HHHHhh
Q psy559 362 IKLVQT 367 (376)
Q Consensus 362 ~~~l~~ 367 (376)
+++|++
T Consensus 416 ~~~l~~ 421 (427)
T 2qfy_A 416 EKRLQK 421 (427)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999954
No 29
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=97.26 E-value=0.0074 Score=62.54 Aligned_cols=188 Identities=16% Similarity=0.134 Sum_probs=130.0
Q ss_pred cccccCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCC--Ceeeeeee-HH
Q psy559 160 EHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYP--EIEHNDMI-ID 236 (376)
Q Consensus 160 e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP--~I~~e~~~-vD 236 (376)
+|.+..|-.+..+-.-..-++-.++.|.+.||..|-.-|.-.|+.-. -|.-..+-+++.-++|- +.++.-+- ++
T Consensus 443 eh~Ve~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HDa~lI~kV~~yL~~hdt~GLdi~Im~p~~ 519 (738)
T 2b0t_A 443 EHDVEANDIWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDPERA---HDRNLASLVEKYLADHDTEGLDIQILSPVE 519 (738)
T ss_dssp EEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCTTCH---HHHHHHHHHHHHHTTSCCTTCCEEEECHHH
T ss_pred eccccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc---cHHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 45555566677777778889999999999999987666666654322 24333333343344553 44454444 56
Q ss_pred HHHHHHHhCCCCcc-EEecCCcchhhHhhhhhhh-cC-CcccccccccCCCceeeccCCCCcccccc------CCCccch
Q psy559 237 NTCMQLVSNPKQFD-VMVMPNLYGAITSNVICGL-IG-GAGLISGKNYGDHYAVFEPGTRNTGTAIA------GKNIANP 307 (376)
Q Consensus 237 ~~~~~Lv~~P~~fd-ViV~~NlfGDILSDlaa~l-~G-glGl~psanig~~~a~FEp~~HGsApdia------Gk~iANP 307 (376)
++-..|-+=-..-| +-||.|..=|.|+||.--| .| |.=|+.-.=+=.+.+|||+++.||||..+ |.=.=+-
T Consensus 520 A~~~slerir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GGGLfETGAGGSAPKHVqQ~~eEnhLRWDS 599 (738)
T 2b0t_A 520 ATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETGAGGSAPKHVQQVQEENHLRWDS 599 (738)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBTTSCEEEECCSSCCCHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCCccccCCCCcCchHHHHHHHHcCccchhh
Confidence 66666644344445 7899999999999999865 23 22222211122346899999999999987 3345677
Q ss_pred hHHHHHHHHHHHHcCcH-------HHHHHHHHHHHHHHHcCCCCCCCCCC
Q psy559 308 IAMLNASVDMLEHLGHM-------KHASIIKLAIEKTINEDKIHTPDLGG 350 (376)
Q Consensus 308 ~a~IlS~amML~~lg~~-------~~A~~I~~AV~~~l~~~~~~T~DlgG 350 (376)
+|-+|+.+-=|+||+.. -.|+.+.+|..+.|++++.-.+-.|.
T Consensus 600 LGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRkvGe 649 (738)
T 2b0t_A 600 LGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEKSPSRKVGE 649 (738)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCSCCSSTTS
T ss_pred HHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccCC
Confidence 99999999999998752 34899999999999998877777765
No 30
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=97.25 E-value=0.0073 Score=62.61 Aligned_cols=188 Identities=19% Similarity=0.190 Sum_probs=129.8
Q ss_pred cccccCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCC--Ceeeeeee-HH
Q psy559 160 EHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYP--EIEHNDMI-ID 236 (376)
Q Consensus 160 e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP--~I~~e~~~-vD 236 (376)
+|.+..|-.+..+-.-..-++-.++.|.+.||..|-.-|.-.|+.-. -|.-..+-+++.-++|- +.++.-+- ++
T Consensus 447 eh~Ve~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HDa~lI~kV~~yL~~hdt~GLdi~Im~p~~ 523 (741)
T 1itw_A 447 EQSVEAGDIWRMCQAKDAPIQDWVKLAVNRARATNTPAVFWLDPARA---HDAQVIAKVERYLKDYDTSGLDIRILSPVE 523 (741)
T ss_dssp EEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCCEEEECCTTSH---HHHHHHHHHHHHHTTSCCTTCCEEEECHHH
T ss_pred EccccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc---cHHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 45555566677777778889999999999999987666666654322 24333333343344553 44454444 56
Q ss_pred HHHHHHHhCCCCcc-EEecCCcchhhHhhhhhhh-cC-CcccccccccCCCceeeccCCCCcccccc------CCCccch
Q psy559 237 NTCMQLVSNPKQFD-VMVMPNLYGAITSNVICGL-IG-GAGLISGKNYGDHYAVFEPGTRNTGTAIA------GKNIANP 307 (376)
Q Consensus 237 ~~~~~Lv~~P~~fd-ViV~~NlfGDILSDlaa~l-~G-glGl~psanig~~~a~FEp~~HGsApdia------Gk~iANP 307 (376)
++-..|-+=-..-| +-||.|..=|.|+||.--| .| |.=|+.-.=+=.+.+|||+++.||||..+ |.=.=+-
T Consensus 524 A~~~sleRir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GGGLfETGAGGSAPKHVqQ~~eEnhLRWDS 603 (741)
T 1itw_A 524 ATRFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETGAGGSAPKHVQQFLEEGYLRWDS 603 (741)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSSEEEEEBTTSCEEEESCSSCCCHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCCccccCCCCcCchHHHHHHHHcCccchhh
Confidence 66666644344445 7899999999999999865 23 22222211122346899999999999987 3345677
Q ss_pred hHHHHHHHHHHHHcCcH-------HHHHHHHHHHHHHHHcCCCCCCCCCC
Q psy559 308 IAMLNASVDMLEHLGHM-------KHASIIKLAIEKTINEDKIHTPDLGG 350 (376)
Q Consensus 308 ~a~IlS~amML~~lg~~-------~~A~~I~~AV~~~l~~~~~~T~DlgG 350 (376)
+|-+|+.+-=|+||+.. -.|+.+.+|..+.|++++.-.+-.|.
T Consensus 604 LGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRkvGe 653 (741)
T 1itw_A 604 LGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNKSPARKVGE 653 (741)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCSCCSSSSS
T ss_pred HHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccCC
Confidence 99999999999998752 34899999999999998877777665
No 31
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=96.44 E-value=0.017 Score=56.57 Aligned_cols=133 Identities=13% Similarity=0.049 Sum_probs=85.1
Q ss_pred EeecHHHHHHHHHHHHHHHHh-CC--CCcEEEEecCCccccc--hHH--------HHHHHHHHHhhCCCeee-eeeeHHH
Q psy559 172 KIITAANSYRLSKYAFEYAKK-FG--RKKVTTVHKANIMKIS--DGL--------FLEISRKVAKEYPEIEH-NDMIIDN 237 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~-r~--rk~Vt~v~KaNvl~~s--dgl--------f~~~~~eva~eyP~I~~-e~~~vD~ 237 (376)
..+|.+.+.+.++.+.+--++ -| +-||-+.- -| +++ .|+ -+-..++..++ ++++ -.+--|+
T Consensus 178 ~~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~g-LN--PHAGE~G~~G~EE~~iI~PAi~~lr~~--Gi~~~GP~paDt 252 (334)
T 3lxy_A 178 GAITQASLHEVITILDNDLKTKFGITQPQIYVCG-LN--PHAGEGGHMGHEEIDTIIPALNTLRQQ--GINLIGPLPADT 252 (334)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEEC-SS--GGGGGGGTTCSHHHHTHHHHHHHHHHT--TCCEEEEECHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe-cC--CCCCCCCCCCchhHHHHHHHHHHHHHC--CCceeCCCChHH
Confidence 457899999999998887665 34 23565552 01 111 223 34445555454 6655 4566788
Q ss_pred HHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCC--ceeeccCCCCccccccCCCccchhHHHHHHH
Q psy559 238 TCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH--YAVFEPGTRNTGTAIAGKNIANPIAMLNASV 315 (376)
Q Consensus 238 ~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~~HGsApdiaGk~iANP~a~IlS~a 315 (376)
+-.+-.+ .+||++|+.... .+---.--+++--+.|+--+ .---.| -||||-||||||+|||.+++-|.-
T Consensus 253 ~F~~~~~--~~~D~vlaMYHD------QGlip~K~l~F~~gVNvTlGLP~iRTS~-DHGTAfDIAGkG~A~~~S~~~Ai~ 323 (334)
T 3lxy_A 253 LFQPKYL--QHADAVLAMYHD------QGLPVLKYQGFGRAVNITLGLPFIRTSV-DHGTALELAATGTADVGSFITALN 323 (334)
T ss_dssp HTSHHHH--TTCSEEEESSHH------HHHHHHHHHHTTCCEEEEESSSSCEEEE-SSCCCGGGTTTTCSCCHHHHHHHH
T ss_pred hcChhhh--ccCCEEEEcccc------hhhHhHHhcccCccEEEecCCCeeeecC-CCCcchhhccCCCCChHHHHHHHH
Confidence 8766555 799999998765 33333334445555665321 222346 799999999999999999988876
Q ss_pred HHH
Q psy559 316 DML 318 (376)
Q Consensus 316 mML 318 (376)
+-.
T Consensus 324 ~A~ 326 (334)
T 3lxy_A 324 LAI 326 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 32
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=94.34 E-value=0.035 Score=54.30 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=86.2
Q ss_pred EeecHHHHHHHHHHHHHHHHhCC--CCcEEEEecCCccccc--hHHH--------HHHHHHHHhhCCCeee-eeeeHHHH
Q psy559 172 KIITAANSYRLSKYAFEYAKKFG--RKKVTTVHKANIMKIS--DGLF--------LEISRKVAKEYPEIEH-NDMIIDNT 238 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~r~--rk~Vt~v~KaNvl~~s--dglf--------~~~~~eva~eyP~I~~-e~~~vD~~ 238 (376)
+.+|++.+.+.+|...++-++.| +-|+-+. ==| ++. .|+| .-..++..++ ++.+ -..--|++
T Consensus 180 ~~it~e~i~~~i~~~~~L~~~fgi~~PrIaV~-GLN--PHAGE~G~~G~EE~~iI~PAi~~~r~~--Gi~~~GP~paDT~ 254 (330)
T 2hi1_A 180 DTLSTARVETVIGIADTFLKRVGYVKPRIAVA-GVN--PHAGENGLFGDEETRILTPAITDARAK--GMDVYGPCPPDTV 254 (330)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTCSSCEEEEE-CSS--GGGSSTTSCCHHHHHTHHHHHHHHHTT--TCEEEEEECHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCCCCCCEEEE-ecC--CCCCCCCCCCHhHHHHHHHHHHHHHHC--CCceeCCCCchhh
Confidence 45899999999999999333334 2344332 222 222 2333 2233333333 6665 55667888
Q ss_pred HHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCC--CceeeccCCCCccccccCCCccchhHHHHHHHH
Q psy559 239 CMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGD--HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVD 316 (376)
Q Consensus 239 ~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~--~~a~FEp~~HGsApdiaGk~iANP~a~IlS~am 316 (376)
-.+-.+ .+||++|+ || -|.+---.--+|+--+.|+-- ..---.| -||||-||||||+|||.+++-|.-+
T Consensus 255 F~~~~~--~~~D~vla--MY----HDQGlip~K~l~F~~gVNvTlGLP~iRTSv-DHGTAfDIAGkG~A~~~Sl~~Ai~~ 325 (330)
T 2hi1_A 255 FLQAYE--GQYDMVVA--MY----HDQGHIPLKLLGFYDGVNITAGLPFIRTSA-DHGTAFDIAWTGKAKSESMAVSIKL 325 (330)
T ss_dssp HHHHHT--TSCSEEEE--SS----HHHHHHHHHHCC-CCSEEEEETSSSEEEEE-SCCCCTTTTTTTCCCCHHHHHHHHH
T ss_pred cccccc--ccCCEEEE--cc----cccccHhHhhcccCcceEEecCCCEEEecC-CCCccccccCCCCCChHHHHHHHHH
Confidence 766554 69999986 44 467666677777777888642 2233456 7999999999999999999988766
Q ss_pred HH
Q psy559 317 ML 318 (376)
Q Consensus 317 ML 318 (376)
-.
T Consensus 326 A~ 327 (330)
T 2hi1_A 326 AM 327 (330)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 33
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=92.41 E-value=0.072 Score=52.37 Aligned_cols=131 Identities=18% Similarity=0.140 Sum_probs=76.9
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCCC--cEEEEecCCccccc--hHHH-H-------HHHHHHHhhCCCeee-eeeeHHHH
Q psy559 172 KIITAANSYRLSKYAFEYAKKFGRK--KVTTVHKANIMKIS--DGLF-L-------EISRKVAKEYPEIEH-NDMIIDNT 238 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~r~rk--~Vt~v~KaNvl~~s--dglf-~-------~~~~eva~eyP~I~~-e~~~vD~~ 238 (376)
+.+|++.+.+.++...+.-++.+.+ |+-+.- =| +|. +|+| + =+.++..++ ++.+ -..--|.+
T Consensus 195 ~~It~~~I~~~i~~~~~~l~~fgi~~PrIaV~G-LN--PHaGE~G~~G~EE~~iI~Pai~~l~~~--gi~v~GP~paDt~ 269 (349)
T 4aty_A 195 ARLDQRHVERAARAAVQALQLMGIAHPVVGLMG-IN--PHAGEGGLFGRDDIDITEPVARKLRDD--GMTVIGPQGADLL 269 (349)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTC-CCCCEEEEC-SS--GGGGTTTTTCSHHHHTHHHHHHHHHHC---CCEEEEECHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCCceEEEe-cC--CCCCccccccchHHHHHHHHHHHHHHC--CCeEeCCCchhhh
Confidence 4678888888888777766665422 333321 12 222 2333 1 133333333 4443 34556776
Q ss_pred HHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCC--CceeeccCCCCccccccCCCccchhHHHHHHHH
Q psy559 239 CMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGD--HYAVFEPGTRNTGTAIAGKNIANPIAMLNASVD 316 (376)
Q Consensus 239 ~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~--~~a~FEp~~HGsApdiaGk~iANP~a~IlS~am 316 (376)
- .+.+||++|+ || -|.+-.-.-.++.--+.|+-- ..---.| -||||-||||||+|||.+++-|.-|
T Consensus 270 F-----~~~~~D~vla--MY----HDQgl~p~K~l~f~~~vnitlGLp~iRtS~-dHGta~diagkg~a~~~s~~~Ai~~ 337 (349)
T 4aty_A 270 L-----TNPDIDVFVA--MY----HDQGHIPVKLRAGRHSAALSIGAGVLFSSV-GHGSGFDIAGTLLADPAPLLGAIRL 337 (349)
T ss_dssp T-----TCTTCSEEEE--SS----HHHHHHHHHHHHTTSEEEEEESSSSEEEEC-CSCCCTTSTTTTCCCCHHHHHHHHH
T ss_pred h-----ccCCCCEEEE--cc----cccchHHHHhcccCCcEEEecCCCeeEeCC-CCChhhhhccCCCCChHHHHHHHHH
Confidence 5 3468999987 55 344433344445555556532 2222456 7999999999999999999888776
Q ss_pred HHH
Q psy559 317 MLE 319 (376)
Q Consensus 317 ML~ 319 (376)
...
T Consensus 338 a~~ 340 (349)
T 4aty_A 338 VTT 340 (349)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 34
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=92.12 E-value=0.078 Score=51.83 Aligned_cols=133 Identities=12% Similarity=0.112 Sum_probs=85.7
Q ss_pred EeecHHHHHHHHHHHHHHHHh-CC--CCcEEEEecCCccccc--hHHH--------HHHHHHHHhhCCCeee-eeeeHHH
Q psy559 172 KIITAANSYRLSKYAFEYAKK-FG--RKKVTTVHKANIMKIS--DGLF--------LEISRKVAKEYPEIEH-NDMIIDN 237 (376)
Q Consensus 172 ~~~Tr~~~eRiar~AFe~A~~-r~--rk~Vt~v~KaNvl~~s--dglf--------~~~~~eva~eyP~I~~-e~~~vD~ 237 (376)
+.+|++.+.+.+|...+--++ .| +-|+-+. ==| ++. .|+| .-..++..++ ++.+ -..--|+
T Consensus 173 ~~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~-GLN--PHAGE~G~~G~EE~~iI~Pai~~~r~~--Gi~~~GP~paDT 247 (328)
T 1yxo_A 173 DAISDERLTRVARILHADLRDKFGIAHPRILVC-GLN--PHAGEGGHLGREEIEVIEPCLERLRGE--GLDLIGPLPADT 247 (328)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEE-CSS--GGGGTTTTTCSHHHHTHHHHHHHHHTT--TCEEEEEECHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEE-ecC--CCCCCCCCCCHhHHHHHHHHHHHHHHC--CCceeCCCCchh
Confidence 458999999999988885554 33 2244332 222 222 2333 2233333333 5665 4556788
Q ss_pred HHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCC--CceeeccCCCCccccccCCCccchhHHHHHHH
Q psy559 238 TCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGD--HYAVFEPGTRNTGTAIAGKNIANPIAMLNASV 315 (376)
Q Consensus 238 ~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~--~~a~FEp~~HGsApdiaGk~iANP~a~IlS~a 315 (376)
+-.+-.+ .+||++|+ || -|.+---.--+|+--+.|+-- ..---.| -||||-||||||+|||.+++-|.-
T Consensus 248 ~F~~~~~--~~~D~vla--MY----HDQGlip~K~l~F~~gVNvTlGLP~iRTSv-DHGTAfDIAGkG~A~~~Sl~~Ai~ 318 (328)
T 1yxo_A 248 LFTPKHL--EHCDAVLA--MY----HDQGLPVLKYKGFGAAVNVTLGLPIIRTSV-DHGTALDLAGSGRIDSGSLQVALE 318 (328)
T ss_dssp HTSHHHH--TTCSEEEE--SS----HHHHHHHHHHHHTTSCEEEEESSSSCEEEE-CSCCCGGGTTTCCCCCHHHHHHHH
T ss_pred hcccccc--cCCCEEEE--cc----cccccHhHhhcccCcceEEecCCCEEEecC-CCCccccccCCCCCChHHHHHHHH
Confidence 8766544 69999886 44 466666666677777777632 2223456 799999999999999999988876
Q ss_pred HHH
Q psy559 316 DML 318 (376)
Q Consensus 316 mML 318 (376)
+-.
T Consensus 319 ~A~ 321 (328)
T 1yxo_A 319 TAY 321 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 35
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=89.74 E-value=0.19 Score=49.72 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=51.1
Q ss_pred eeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcCCcccccccccCCC--ceeeccCCCCccccccCCC-ccchhH
Q psy559 233 MIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDH--YAVFEPGTRNTGTAIAGKN-IANPIA 309 (376)
Q Consensus 233 ~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~~HGsApdiaGk~-iANP~a 309 (376)
.--|++-.+-.+ .+||++|+ || -|.+-.-.--+|+--+.|+--+ .---.| -||||-|||||| +|||.+
T Consensus 282 ~paDT~F~~~~~--~~~D~vlA--MY----HDQGliplK~l~F~~gVNvTlGLP~IRTSv-DHGTAfDIAGkG~~Ad~~S 352 (367)
T 3tsn_A 282 LVADTAFTKTGL--KNCNRLVA--MY----HDLALAPLKALYFDKSINVSLNLPIIRVSV-DHGTAFDKAYKNAKINTKS 352 (367)
T ss_dssp BCHHHHTSHHHH--HHCCEEEE--SS----HHHHHHHHHHHCTTTCEEEEESSSSCEEEC-CCCSCTTSCSSCCCCCCHH
T ss_pred cCchhhhccchh--cCCCEEEE--cc----ccCcchhhhhcccCccEEEecCCCeeeecC-CCCcchhhcCCCCcCChHH
Confidence 334555443322 57888887 34 4555555556666667776322 222446 799999999999 999999
Q ss_pred HHHHHHHHH
Q psy559 310 MLNASVDML 318 (376)
Q Consensus 310 ~IlS~amML 318 (376)
++-|.-+-.
T Consensus 353 l~~Ai~~A~ 361 (367)
T 3tsn_A 353 YFEAAKFAI 361 (367)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988876644
No 36
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=87.08 E-value=4.1 Score=39.67 Aligned_cols=133 Identities=13% Similarity=0.121 Sum_probs=78.1
Q ss_pred ecHHHHHHHHHHHHHHHHh-CCC--CcEEEEecCCccc---cchHHHHHHHHHHHhhCCCeeee-eeeHHHHHHHHHhCC
Q psy559 174 ITAANSYRLSKYAFEYAKK-FGR--KKVTTVHKANIMK---ISDGLFLEISRKVAKEYPEIEHN-DMIIDNTCMQLVSNP 246 (376)
Q Consensus 174 ~Tr~~~eRiar~AFe~A~~-r~r--k~Vt~v~KaNvl~---~sdglf~~~~~eva~eyP~I~~e-~~~vD~~~~~Lv~~P 246 (376)
.|.+...++++.+-++|++ .|. -||-+. |+-. .....-++.++...++ |++.++ .+--|....
T Consensus 148 ~~~e~L~~~a~~~~~~a~~~~Gi~~PrValL---N~Ge~~~~g~e~i~~A~~ll~~~-~~i~~~G~ve~d~~~~------ 217 (345)
T 1vi1_A 148 AKPEHLVQYAIMGSVYSQQVRGVTSPRVGLL---NVGTEDKKGNELTKQTFQILKET-ANINFIGNVEARDLLD------ 217 (345)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCCSSCEEEEE---ESSSSTTCSCHHHHHHHHHHHSC-TTSEEEEEEEGGGGGG------
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEEEE---eCCCCCCCCCHHHHHHHHHHhcC-CCCeEEeccCCCcccc------
Confidence 5788889999999999998 553 467776 3311 1234455666555544 777763 344454432
Q ss_pred CCccEEecCCcc-hhhHhhhh----------------hhhcCCcccc---cccccCCCceeeccCCCCccc-------cc
Q psy559 247 KQFDVMVMPNLY-GAITSNVI----------------CGLIGGAGLI---SGKNYGDHYAVFEPGTRNTGT-------AI 299 (376)
Q Consensus 247 ~~fdViV~~Nlf-GDILSDla----------------a~l~GglGl~---psanig~~~a~FEp~~HGsAp-------di 299 (376)
..+||+|| +.| |+|.-=.. +++.+.+|+. |... .-..-+.|..||+|+ ++
T Consensus 218 G~aDVvV~-d~~~GNI~lK~~eg~~~~~~~~~k~~f~~~~~~~lg~~l~~P~l~--~~~~~~d~~~~gga~llG~~~pvi 294 (345)
T 1vi1_A 218 DVADVVVT-DGFTGNVTLKTLEGSALSIFKMMRDVMTSTLTSKLAAAVLKPKLK--EMKMKMEYSNYGGASLFGLKAPVI 294 (345)
T ss_dssp TSCSEEEC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-------CCHHHHH--HHHHHHCGGGSCCEEEETBSSCEE
T ss_pred CCCCEEEe-CchhhhHHHHHHHhhhhhhHHHHHHHhhcchhhhhhhhhccchHH--HHHhcCCccccccceeecCCccEE
Confidence 78999997 666 88854443 2222333321 2110 000001121377777 89
Q ss_pred cCCCccchhHHHHHHHHHHH
Q psy559 300 AGKNIANPIAMLNASVDMLE 319 (376)
Q Consensus 300 aGk~iANP~a~IlS~amML~ 319 (376)
++++.+|+-+++.|..+-..
T Consensus 295 ~~~g~a~~~~i~~ai~~A~~ 314 (345)
T 1vi1_A 295 KAHGSSDSNAVFRAIRQARE 314 (345)
T ss_dssp ECCTTCCHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHH
Confidence 99999999999888876544
No 37
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=83.27 E-value=27 Score=31.92 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCeEEEcccccCCCC----chh-hHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccC
Q psy559 91 EYAITSIRRNGVAIKGNIETGSLD----SLW-TLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVD 165 (376)
Q Consensus 91 ~~~~~~~~~~dail~G~i~~p~~~----~~~-~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~ 165 (376)
+..++.++++|.+++|.-+..... .+. .-.+| .-+.+++|||...... ......
T Consensus 114 ~~I~~~a~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~-----------------~~~~PVlvv~~~~~~~----~~~~~~ 172 (309)
T 3cis_A 114 PTLVDMSKDAVLMVVGCLGSGRWPGRLLGSVSSGLLR-----------------HAHCPVVIIHDEDSVM----PHPQQA 172 (309)
T ss_dssp HHHHHHGGGEEEEEEESSCTTCCTTCCSCHHHHHHHH-----------------HCSSCEEEECTTCCCS----CSSCCC
T ss_pred HHHHHHhcCCCEEEECCCCCccccccccCcHHHHHHH-----------------hCCCCEEEEcCCcccC----CCCCCC
Confidence 345566678999999987643211 111 11223 1368899999765320 000111
Q ss_pred ceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEec
Q psy559 166 GVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHK 203 (376)
Q Consensus 166 ~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~K 203 (376)
.+.+.+. -...+++.+++|+++|+..+ .+|+++|=
T Consensus 173 ~Ilv~~D--~s~~s~~al~~a~~la~~~~-a~l~ll~v 207 (309)
T 3cis_A 173 PVLVGVD--GSSASELATAIAFDEASRRN-VDLVALHA 207 (309)
T ss_dssp CEEEECC--SSHHHHHHHHHHHHHHHHTT-CCEEEEEE
T ss_pred eEEEEeC--CChHHHHHHHHHHHHHHhcC-CEEEEEEE
Confidence 2333322 13567899999999999863 57888873
No 38
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C*
Probab=81.19 E-value=7.6 Score=37.40 Aligned_cols=98 Identities=13% Similarity=0.211 Sum_probs=66.5
Q ss_pred eecHHHHHHHHHHHHHHHHh-CC-CCcEEEEec---CCccccchHHHHHHHHHHHhhCCCeeee-eeeHHHHHHHHHh--
Q psy559 173 IITAANSYRLSKYAFEYAKK-FG-RKKVTTVHK---ANIMKISDGLFLEISRKVAKEYPEIEHN-DMIIDNTCMQLVS-- 244 (376)
Q Consensus 173 ~~Tr~~~eRiar~AFe~A~~-r~-rk~Vt~v~K---aNvl~~sdglf~~~~~eva~eyP~I~~e-~~~vD~~~~~Lv~-- 244 (376)
-.|.+...+|++.+-++|++ -| .-||-+..= .+.-......-++.++...+++|++.++ ++-.|++...=+.
T Consensus 177 ~pt~e~l~~ia~~~~~~~~~~~Gi~PrVAlLs~ge~g~~~~~~~~~v~~A~~ll~~~~~~~~v~Gpl~~D~a~~~~~~~~ 256 (333)
T 2af4_C 177 MPSVEDVANIAVISAKTFELLVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQELAPDIAIDGELQVDAAIVPKVAAS 256 (333)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHCSCCEEEEECSCSTTSCCSHHHHHHHHHHHHHHHHCTTSEEEEEECHHHHHCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCCcHHHHHHHHHHhccCCCcEEEecCcHHHhcCHHHHHh
Confidence 35788888999999999988 44 345666542 1211011234566666666778998874 6668887755555
Q ss_pred ----CC--CCccEEecCCcc-hhhHhhhhhhhc
Q psy559 245 ----NP--KQFDVMVMPNLY-GAITSNVICGLI 270 (376)
Q Consensus 245 ----~P--~~fdViV~~Nlf-GDILSDlaa~l~ 270 (376)
+| ..+||+|+||+| |+|.-=+..-+.
T Consensus 257 k~~~s~~~G~aDvlV~pd~d~GNI~~K~l~~~~ 289 (333)
T 2af4_C 257 KAPGSPVAGKANVFIFPDLNCGNIAYKIAQRLA 289 (333)
T ss_dssp HSTTCSSTTSCCEEECSSHHHHHHHHHHHHHTS
T ss_pred cCCCCccCCcCCEEEECCchHHHHHHHHHHHcc
Confidence 44 689999999999 999877655443
No 39
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4
Probab=80.60 E-value=9.4 Score=36.86 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=73.8
Q ss_pred ecHHHHHHHHHHHHHHHHh-CCC--CcEEEEecCCccc---cchHHHHHHHHHHHhhCCCeeee-eeeHHHHHHHHHhCC
Q psy559 174 ITAANSYRLSKYAFEYAKK-FGR--KKVTTVHKANIMK---ISDGLFLEISRKVAKEYPEIEHN-DMIIDNTCMQLVSNP 246 (376)
Q Consensus 174 ~Tr~~~eRiar~AFe~A~~-r~r--k~Vt~v~KaNvl~---~sdglf~~~~~eva~eyP~I~~e-~~~vD~~~~~Lv~~P 246 (376)
.|.+...++++.+-++|++ .|. -||-+. |+-. .....-++..+...++ |++.++ .+--|....
T Consensus 150 ~~~e~L~~~a~~~~~~a~~~~Gi~~PrValL---N~Ge~~~~g~e~v~~A~~ll~~~-~~i~~~G~ve~d~~~~------ 219 (336)
T 1u7n_A 150 NKPEHLVQYAVLGSFYAEKVRNVQNPRVGLL---NNGTEETKGSELTKKAFELLAAD-ETINFVGNVEARELLN------ 219 (336)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCSSCCEEEE---CSCC----CCHHHHHHHHHHHHC-TTSCEEEEECGGGGGG------
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEEEE---eCcCCCCCCCHHHHHHHHHHhcC-CCCeEEeccCCCcccc------
Confidence 4566677777777799998 553 467776 4421 1223345555554444 777663 333454332
Q ss_pred CCccEEecCCcc-hhhHhhhhh-----------------hhcCCcccc---cccccCCCceeeccCCCCccc-------c
Q psy559 247 KQFDVMVMPNLY-GAITSNVIC-----------------GLIGGAGLI---SGKNYGDHYAVFEPGTRNTGT-------A 298 (376)
Q Consensus 247 ~~fdViV~~Nlf-GDILSDlaa-----------------~l~GglGl~---psanig~~~a~FEp~~HGsAp-------d 298 (376)
..+||+|| +.| |+|.-=..- ++.+.+|+. |+-. .-..-+.|..||+|+ +
T Consensus 220 g~~DvvV~-d~~~GNi~lK~~eg~~~~~~~~~k~~f~~~~~~~~lg~~li~~~l~--~l~~~~d~~~~gga~llG~~~pv 296 (336)
T 1u7n_A 220 GVADVVVT-DGFTGNAVLKSIEGTAMNMMSLLKTAILSEGVKGKMGALLLKNALH--GMKDEMDYSKHGGAVLFGLKAPV 296 (336)
T ss_dssp CSCSEEEC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHH--HHHHHTCGGGGCCEEEETBSSCE
T ss_pred CCCCEEEe-CcchhhHHHHHHHhhHHHHHHHHHHHhccCCchhhhhhhhhhhhHH--HHHhccCccccccceeecCcCcE
Confidence 78999997 666 888654441 222222321 1100 000000111377777 8
Q ss_pred ccCCCccchhHHHHHHHHHHH
Q psy559 299 IAGKNIANPIAMLNASVDMLE 319 (376)
Q Consensus 299 iaGk~iANP~a~IlS~amML~ 319 (376)
+++++.+|+-+++.|..+..+
T Consensus 297 i~~~g~a~~~~i~~ai~~A~~ 317 (336)
T 1u7n_A 297 IKTHGATGPDAVRYTIRQIHT 317 (336)
T ss_dssp EECCTTCCHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHH
Confidence 999999999999888876543
No 40
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Probab=77.84 E-value=11 Score=36.13 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=67.3
Q ss_pred eecHHHHHHHHHHHHHHHHhCC-CCcEEEEecCC-cc-c-cchHHHHHHHHHHHhhCCCeeee-eeeHHHHHHHHHh---
Q psy559 173 IITAANSYRLSKYAFEYAKKFG-RKKVTTVHKAN-IM-K-ISDGLFLEISRKVAKEYPEIEHN-DMIIDNTCMQLVS--- 244 (376)
Q Consensus 173 ~~Tr~~~eRiar~AFe~A~~r~-rk~Vt~v~KaN-vl-~-~sdglf~~~~~eva~eyP~I~~e-~~~vD~~~~~Lv~--- 244 (376)
-.|.+...++++.+-+++++-| .-||-+..=.+ .. . .....-++.++...+++|++.++ .+-.|++...=+.
T Consensus 178 ~pt~e~l~~ia~~~~~~~~~~Gi~PrVAlLs~ge~G~~~~~~~~~i~~A~~ll~~~~~~~~v~Gpl~~D~a~~~~~~~~k 257 (329)
T 1td9_A 178 APDSQDLAEIAIESANTAKMFDIEPRVAMLSFSTKGSAKSDETEKVADAVKIAKEKAPELTLDGEFQFDAAFVPSVAEKK 257 (329)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTTCCCCEEEECSSSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEECHHHHHCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCchHHHHHHHHHHHhhCCCCEEEeCCcHHHHcCHHHHHhh
Confidence 4578889999999999998855 34666665211 11 1 11124566666666778998874 6668887765554
Q ss_pred ---CC--CCccEEecCCcc-hhhHhhhhhhhcC
Q psy559 245 ---NP--KQFDVMVMPNLY-GAITSNVICGLIG 271 (376)
Q Consensus 245 ---~P--~~fdViV~~Nlf-GDILSDlaa~l~G 271 (376)
+| .++||+|++|+| |+|.-=+..-+.|
T Consensus 258 ~~~s~~~G~aDvlV~pd~d~GNI~~K~l~~~~~ 290 (329)
T 1td9_A 258 APDSEIKGDANVFVFPSLEAGNIGYKIAQRLGN 290 (329)
T ss_dssp CTTSSCSSCCSEEECSSHHHHHHHHHHHHHTTT
T ss_pred CCCCccCCCCCEEEECChhHHHHHHHHHHHhcC
Confidence 33 589999999999 9998777655443
No 41
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=76.50 E-value=41 Score=29.85 Aligned_cols=183 Identities=11% Similarity=0.024 Sum_probs=90.8
Q ss_pred CCeeeEEEEcCCCCCH---HHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCCCc
Q psy559 41 GGRNAVTMLPGGGIGP---ELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSLDS 115 (376)
Q Consensus 41 ~~~~~I~vipGDGIGp---EV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~~~ 115 (376)
++.++|+++-.+--.| ++.....+.++..|..+.+. ..... .....+.++.+ ++.|+++..+...+. ..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~---~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~ 79 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVA--TSQNS---RISEREQILEFVHLKVDAIFITTLDDVY-IG 79 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEE--ECSSC---HHHHHHHHHHHHHTTCSEEEEECSCTTT-TH
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEE--CCCCC---HHHHHHHHHHHHHcCCCEEEEecCChHH-HH
Confidence 4568899887664443 45555555555556555442 22110 00012334444 458888887653321 01
Q ss_pred hhhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHH--HHh-
Q psy559 116 LWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEY--AKK- 192 (376)
Q Consensus 116 ~~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~--A~~- 192 (376)
...-.++ ..++.+|++-...++. + ....+..-...+.+..+++..+. -.+
T Consensus 80 ~~~~~~~-----------------~~~iPvV~~~~~~~~~---------~-~~~~V~~D~~~~g~~~~~~l~~~~~g~~~ 132 (293)
T 3l6u_A 80 SAIEEAK-----------------KAGIPVFAIDRMIRSD---------A-VVSSITSNNQMIGEQLASYIKNELIKQTG 132 (293)
T ss_dssp HHHHHHH-----------------HTTCCEEEESSCCCCT---------T-CSEEEEECHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHH-----------------HcCCCEEEecCCCCCC---------c-ceeEEecCHHHHHHHHHHHHHHHhccCCC
Confidence 1122222 1356677763322210 0 01122233345555666665553 222
Q ss_pred CCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeee-----H---HHHHHHHHhCCCCccEEecCCc
Q psy559 193 FGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMI-----I---DNTCMQLVSNPKQFDVMVMPNL 257 (376)
Q Consensus 193 r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~-----v---D~~~~~Lv~~P~~fdViV~~Nl 257 (376)
+..++|-++.-..-. .+.....+-+++..+++|++++.... . -.++.++++...++|.|++.|=
T Consensus 133 ~~~~~i~~i~g~~~~-~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 204 (293)
T 3l6u_A 133 RSTGRIVEITGTANV-YTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQVIDSGIPFDAVYCHND 204 (293)
T ss_dssp CSCEEEEEEECSTTC-HHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHTTCCCSEEEESSH
T ss_pred CCCceEEEEECCCCC-chHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 111377777532211 13345566777777888998875432 1 2345677777678999999873
No 42
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura genomics, JCSG, protein structure initiative, PSI, joint CE structural genomics; 2.32A {Escherichia coli} SCOP: c.77.1.5
Probab=76.02 E-value=13 Score=36.11 Aligned_cols=99 Identities=20% Similarity=0.229 Sum_probs=66.5
Q ss_pred eecHHHHHHHHHHHHHHHHhC-CC-CcEEEEecCC---ccccchHHHHHHHHHHHhhCCCeee-eeeeHHHHHHHHHh--
Q psy559 173 IITAANSYRLSKYAFEYAKKF-GR-KKVTTVHKAN---IMKISDGLFLEISRKVAKEYPEIEH-NDMIIDNTCMQLVS-- 244 (376)
Q Consensus 173 ~~Tr~~~eRiar~AFe~A~~r-~r-k~Vt~v~KaN---vl~~sdglf~~~~~eva~eyP~I~~-e~~~vD~~~~~Lv~-- 244 (376)
-.|.+...+|++.+-++|++- |- -||-+..=.+ .-......-++.++...+++|++.+ -++-.|++...=+.
T Consensus 184 ~pt~e~l~~ia~~a~~~a~~~~Gi~PrVAlLs~ge~Gs~~~~~~~~i~~A~~llk~~~~~~~v~Gpl~~D~A~~~~~~~~ 263 (355)
T 1vmi_A 184 QPTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANVQQATEIVRERAPKLVVDGELQFDAAFVPEVAAQ 263 (355)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECSCSTTSSCSHHHHHHHHHHHHHHHHCTTSEEEEEECHHHHHCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCCCCCccHHHHHHHHHHHhccCCCCEEEeCCChHHhhCHHHHhh
Confidence 346888889999999999885 53 4666665222 1111222446666666678899887 45668877755444
Q ss_pred ----CC--CCccEEecCCcc-hhhHhhhhhhhcC
Q psy559 245 ----NP--KQFDVMVMPNLY-GAITSNVICGLIG 271 (376)
Q Consensus 245 ----~P--~~fdViV~~Nlf-GDILSDlaa~l~G 271 (376)
+| ..+||+|+||+| |+|.-=+..-+.|
T Consensus 264 k~~~s~~~G~aDvlV~Pd~d~GNI~~K~l~~~~~ 297 (355)
T 1vmi_A 264 KAPASPLQGKANVMVFPSLEAGNIGYKIAQRLGG 297 (355)
T ss_dssp HCTTCTTTTCCSEEECSSHHHHHHHHHHHHHHHC
T ss_pred cCCCCccCCCCCEEEECChhHHhHHHHHHHHccC
Confidence 44 589999999999 9998777554433
No 43
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=73.79 E-value=21 Score=34.20 Aligned_cols=100 Identities=17% Similarity=0.125 Sum_probs=67.7
Q ss_pred eecHHHHHHHHHHHHHHHHhCC-CCcEEEEecCCccccch---HHHHHHHHHHHhhCCCeeee-eeeHHHHHHHHHh---
Q psy559 173 IITAANSYRLSKYAFEYAKKFG-RKKVTTVHKANIMKISD---GLFLEISRKVAKEYPEIEHN-DMIIDNTCMQLVS--- 244 (376)
Q Consensus 173 ~~Tr~~~eRiar~AFe~A~~r~-rk~Vt~v~KaNvl~~sd---glf~~~~~eva~eyP~I~~e-~~~vD~~~~~Lv~--- 244 (376)
-.|.+...++++.+-+++++-| .-||-+..=.+.-.... ..-++.++...+++|++.++ .+-.|++...=+.
T Consensus 182 ~~t~e~l~~ia~~~~~~~~~~Gi~PrVAlLs~~~~G~e~~~~~~~i~~A~~llk~~~~~~~v~Gpl~~D~a~~~~~~~~k 261 (337)
T 1r5j_A 182 DPTAQELAEIAVNTAETAKIFDIDPKIAMLSFSTKGSGKAPQVDKVREATEIATGLNPDLALDGELQFDAAFVPETAAIK 261 (337)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCCCEEEECSCSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEECHHHHHCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeEEEEecCccCCCCCCCcHHHHHHHHHHhccCCCcEEEecCcHHHhcCHHHHHhh
Confidence 3578899999999999999855 23566554322221111 12566777677789998774 5558888644443
Q ss_pred ---CC--CCccEEecCCcc-hhhHhhhhhhhcCC
Q psy559 245 ---NP--KQFDVMVMPNLY-GAITSNVICGLIGG 272 (376)
Q Consensus 245 ---~P--~~fdViV~~Nlf-GDILSDlaa~l~Gg 272 (376)
+| .++||+|++|++ |+|.-=+..-+.|.
T Consensus 262 ~~~s~~~G~aDvlv~p~~d~GnI~~K~l~~~~~~ 295 (337)
T 1r5j_A 262 APDSAVAGQANTFVFPDLQSGNIGYKIAQRLGMF 295 (337)
T ss_dssp SCSCSSTTCCCEEECSSHHHHHHHHHHHHHTTCC
T ss_pred CCCCccCCCCCEEEECChHHHHHHHHHHHHhcCC
Confidence 22 689999999999 99987776655444
No 44
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=70.25 E-value=39 Score=31.71 Aligned_cols=222 Identities=16% Similarity=0.174 Sum_probs=114.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCC----------CCCC-hHH---HHHHHH--hcCeEEEcc
Q psy559 44 NAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSD----------SNDD-LEY---AITSIR--RNGVAIKGN 107 (376)
Q Consensus 44 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~----------~~~~-~~~---~~~~~~--~~dail~G~ 107 (376)
+||++..|+ -+++++++.++++. ..+- .+.+.+|.... +... |.. ..+.++ ++|+.++|.
T Consensus 2 kriv~~e~~--d~~vl~aa~~a~~~-~~~~-~~~iLvG~~~~l~~~~~~~Iv~~~~~~~~a~~a~~lV~~G~aDa~vsG~ 77 (279)
T 1yco_A 2 ITVSIAGGS--QPEILQLVKKALKE-AEQP-LQFIVFDTNENLDTENLWKYVHCSDEAAVAQEAVSLVATGQAQILLKGI 77 (279)
T ss_dssp EEEEEETCC--SHHHHHHHHHHHHH-CCSC-EEEEEEESSCCCCSSCCSEEEECSSHHHHHHHHHHHHHSTTCSEEEECS
T ss_pred cEEEEecCC--CHHHHHHHHHHHHh-CCCC-CeEEEEECHHHcCCCCCeEEEcCCCCHHHHHHHHHHHHCCCCCEEEeCC
Confidence 578888885 48999999999997 3200 12344444321 0111 222 233443 599999999
Q ss_pred cccCCCCchhhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEe---ecHHHHHHHHH
Q psy559 108 IETGSLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKI---ITAANSYRLSK 184 (376)
Q Consensus 108 i~~p~~~~~~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~---~Tr~~~eRiar 184 (376)
++++.- ....++ +.+++ .|| . +...+=++.... .+.+. ..|+-+ -|.+..-.|+.
T Consensus 78 ~~t~~~---l~~~l~-~~ig~----~~g-~-r~s~~~~~~~p~--~~~~~----------l~D~g~N~~p~~e~l~~ia~ 135 (279)
T 1yco_A 78 IQTHTL---LKEMLK-SEHQL----KNK-P-ILSHVAMVELPA--GKTFL----------LTDCAMNIAPTQATLIEIVE 135 (279)
T ss_dssp SCHHHH---HHHHTC-TTTCC----BCS-S-SCEEEEEEECSS--SCEEE----------EECSSSCSSCCHHHHHHHHH
T ss_pred CChHHH---HHHHHH-HhcCC----CCC-C-eEEEEEEEEecC--CCEEE----------EEeCCCCCCCCHHHHHHHHH
Confidence 875210 000122 22221 122 1 000111111111 22111 011111 24567778888
Q ss_pred HHHHHHHhCCC--CcEEEEe---cCCccccchHHHHHHHHHH--HhhCCCeee-eeeeHHHHHHHHHh------CC--CC
Q psy559 185 YAFEYAKKFGR--KKVTTVH---KANIMKISDGLFLEISRKV--AKEYPEIEH-NDMIIDNTCMQLVS------NP--KQ 248 (376)
Q Consensus 185 ~AFe~A~~r~r--k~Vt~v~---KaNvl~~sdglf~~~~~ev--a~eyP~I~~-e~~~vD~~~~~Lv~------~P--~~ 248 (376)
.+-++|++-|- -||-+.. |.|- ....-++..+-+ .++.|++.+ -++..|++.-.=++ ++ ..
T Consensus 136 ~a~~~a~~lGi~~PkVAlLs~~~~g~~---~~~~~~~a~~l~k~l~~~~~~~~dG~i~~D~A~~~~~~~~k~~~s~~~G~ 212 (279)
T 1yco_A 136 NAKEVAQKLGLHHPKIALLSAAENFNP---KMPSSVLAKEVTAHFNDQQEATVFGPLSLDLATSEEAVAHKRYSGPIMGD 212 (279)
T ss_dssp HHHHHHHHTTCSSCEEEEECSCSSCCT---TCHHHHHHHHHHHHHSSCSSCEEEEEECHHHHHCHHHHHHTTCCSSCSSC
T ss_pred HHHHHHHHhCCCCCeEEEEeccccCCC---CChHHHHHHHHHHHHHhCCCCEEEeeCcHHhhcCHHHHHhcCCCCccCCC
Confidence 99999998764 3566653 4442 112333333321 223488776 45667876544444 44 46
Q ss_pred ccEEecCCcc-hhhHhhhhhhhcCCcccccccccCCCceeeccCCCCcccc
Q psy559 249 FDVMVMPNLY-GAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTA 298 (376)
Q Consensus 249 fdViV~~Nlf-GDILSDlaa~l~GglGl~psanig~~~a~FEp~~HGsApd 298 (376)
-||+|+||+| |+|+-=+.-.+.|+ -..| .-+|-+..+.- .|+++..
T Consensus 213 adVlV~Pd~~aGNi~~K~~~~~~~~-~~gg-illG~~~pV~~--~sr~~~~ 259 (279)
T 1yco_A 213 ADILVVPTIDVGNCLYKSLTLFGHA-KVGG-TIVGTKVPVVL--TSRSDST 259 (279)
T ss_dssp CSEEECSSHHHHHHHHHHHHHHSCC-EEEE-EEESBSSCEEE--CCTTSCH
T ss_pred CCEEEECCchHHHHHHHHHHHhCCC-eEee-eeecCCccEEE--CCCCCCH
Confidence 7999999998 99988887766554 2223 34454332332 4666643
No 45
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=68.89 E-value=66 Score=28.95 Aligned_cols=177 Identities=11% Similarity=0.041 Sum_probs=86.9
Q ss_pred CeeeEEEEcCC---CCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCCCch
Q psy559 42 GRNAVTMLPGG---GIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSLDSL 116 (376)
Q Consensus 42 ~~~~I~vipGD---GIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~~~~ 116 (376)
++++|+++--+ ---.++.....+.++..|..+.+.. ... +.....+.++.+ ++.|+++..+..... ...
T Consensus 1 k~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~---~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-~~~ 74 (313)
T 3m9w_A 1 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQS--ANG---NEETQMSQIENMINRGVDVLVIIPYNGQV-LSN 74 (313)
T ss_dssp --CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEE--CTT---CHHHHHHHHHHHHHTTCSEEEEECSSTTS-CHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCC---CHHHHHHHHHHHHHcCCCEEEEeCCChhh-hHH
Confidence 35678876543 3456777777777777776655532 111 000112344444 458898887764321 111
Q ss_pred hhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHH-hCCC
Q psy559 117 WTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAK-KFGR 195 (376)
Q Consensus 117 ~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~-~r~r 195 (376)
..-.++ ..++.+|++-...++. +....+..-.. ...+.|.++.. +.|.
T Consensus 75 ~~~~~~-----------------~~~iPvV~~~~~~~~~----------~~~~~V~~D~~----~~g~~a~~~L~~~~G~ 123 (313)
T 3m9w_A 75 VVKEAK-----------------QEGIKVLAYDRMINDA----------DIDFYISFDNE----KVGELQAKALVDIVPQ 123 (313)
T ss_dssp HHHHHH-----------------TTTCEEEEESSCCTTS----------CCSEEEEECHH----HHHHHHHHHHHHHCSS
T ss_pred HHHHHH-----------------HCCCeEEEECCcCCCC----------CceEEEecCHH----HHHHHHHHHHHHhCCC
Confidence 122233 1356677764333220 00001111222 34445555554 5777
Q ss_pred CcEEEEecCCccccchHHHHHHHHHHHhhC---CCeeeee-e-----eHH---HHHHHHHhC-CCCccEEecCC
Q psy559 196 KKVTTVHKANIMKISDGLFLEISRKVAKEY---PEIEHND-M-----IID---NTCMQLVSN-PKQFDVMVMPN 256 (376)
Q Consensus 196 k~Vt~v~KaNvl~~sdglf~~~~~eva~ey---P~I~~e~-~-----~vD---~~~~~Lv~~-P~~fdViV~~N 256 (376)
++|-++.-..-.. +.....+-+++..+++ |++++.. . ..+ .++.++++. |..+|.|++.|
T Consensus 124 ~~i~~i~g~~~~~-~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~ 196 (313)
T 3m9w_A 124 GNYFLMGGSPVDN-NAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVASN 196 (313)
T ss_dssp EEEEEEESCTTCH-HHHHHHHHHHHHHHHHHHTTSEEEEEEEECGGGCHHHHHHHHHHHHHHTTTCCCEEEESS
T ss_pred CcEEEEECCCCCc-cHHHHHHHHHHHHHhhccCCCEEEEeeccCCCcCHHHHHHHHHHHHHhCCCCeeEEEECC
Confidence 8888885322111 2233344455544444 6777632 1 122 234455554 37899999987
No 46
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=68.39 E-value=13 Score=33.23 Aligned_cols=175 Identities=9% Similarity=0.061 Sum_probs=88.5
Q ss_pred CeeeEEEEcCCCCC---HHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCCCch
Q psy559 42 GRNAVTMLPGGGIG---PELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSLDSL 116 (376)
Q Consensus 42 ~~~~I~vipGDGIG---pEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~~~~ 116 (376)
+.++|+++--+--. .++.....+.++..|..+.+. ..... .....+.++.+ ++.|+++..|..... ...
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~---~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 77 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIAL--DAGRN---DQTQVSQIQTLIAQKPDAIIEQLGNLDV-LNP 77 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEE--ECTTC---HHHHHHHHHHHHHHCCSEEEEESSCHHH-HHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEE--cCCCC---HHHHHHHHHHHHHcCCCEEEEeCCChhh-hHH
Confidence 45788877554333 356666666666667655553 22110 00012334444 458898887763210 001
Q ss_pred hhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHh--CC
Q psy559 117 WTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKK--FG 194 (376)
Q Consensus 117 ~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~--r~ 194 (376)
..-.++ ..++.+|++-...++. .-.+..-.. ...+.|.++..+ +|
T Consensus 78 ~~~~~~-----------------~~~iPvV~~~~~~~~~------------~~~V~~D~~----~~g~~~~~~l~~~~~g 124 (291)
T 3l49_A 78 WLQKIN-----------------DAGIPLFTVDTATPHA------------INNTTSNNY----SIGAELALQMVADLGG 124 (291)
T ss_dssp HHHHHH-----------------HTTCCEEEESCCCTTC------------SEEEEECHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHH-----------------HCCCcEEEecCCCCCc------------CceEecChH----HHHHHHHHHHHHHcCC
Confidence 111222 1356677764322210 011122222 344455555555 67
Q ss_pred CCcEEEEecCCccccchHHHHHHHHHHHhhCCCee-eeeee-------HH---HHHHHHHh-CCC--CccEEecCC
Q psy559 195 RKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIE-HNDMI-------ID---NTCMQLVS-NPK--QFDVMVMPN 256 (376)
Q Consensus 195 rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~-~e~~~-------vD---~~~~~Lv~-~P~--~fdViV~~N 256 (376)
.+||.++.-..-.. +.....+-+++..+++|+++ ++..+ .+ .++.++++ +|. ++|.|++.|
T Consensus 125 ~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~ 199 (291)
T 3l49_A 125 KGNVLVFNGFYSVP-VCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIWACW 199 (291)
T ss_dssp CEEEEEECSCTTSH-HHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEEESS
T ss_pred CceEEEEeCCCCCc-hHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEEECC
Confidence 88898885332221 23445566777777888887 34322 12 23445555 453 899999987
No 47
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=65.92 E-value=27 Score=27.88 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=41.3
Q ss_pred eeeEEEEcCCCCCHHHH-HHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHHhcCeEEEccc
Q psy559 43 RNAVTMLPGGGIGPELM-SYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNI 108 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~-~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~~dail~G~i 108 (376)
.++|.+.=|.|++..++ ....++++..|++++.+.+.++... +.+.++|++|.||-
T Consensus 3 mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~----------~~~~~~Dvil~~pq 59 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAG----------EKGQNADVVLLGPQ 59 (106)
T ss_dssp CEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTT----------HHHHHCSEEEECTT
T ss_pred CcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHH----------hhccCCCEEEEccc
Confidence 46899999999998854 4455666666889888777765531 23567999999884
No 48
>3uf6_A LMO1369 protein; structural genomics, the center for structural genomics of I diseases, csgid, unknown function, transferase; HET: COD; 1.80A {Listeria monocytogenes} PDB: 3tng_A* 3u9e_A*
Probab=60.67 E-value=49 Score=31.28 Aligned_cols=199 Identities=14% Similarity=0.197 Sum_probs=107.0
Q ss_pred CCCeeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCC------C------CCChHH----HHHHHH--hcC
Q psy559 40 YGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSD------S------NDDLEY----AITSIR--RNG 101 (376)
Q Consensus 40 ~~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~------~------~~~~~~----~~~~~~--~~d 101 (376)
...++||++-.|+ -++|++++.++++. +. .+.+.+|.... . ....++ ....++ ++|
T Consensus 15 ~~~~kriv~~e~~--d~~vl~Aa~~a~~e-g~---~~~ILvG~~~~I~~~~~~~~eIid~~~~~~aar~a~~mV~~G~AD 88 (291)
T 3uf6_A 15 ETSSFVFAVAGAD--DEVVLETIRLALKQ-KL---GKFLLFGKKEDKTLTANESVTWIQTDTAEAAAQGAILAVKNKEAD 88 (291)
T ss_dssp CCCCCEEEEETCC--SHHHHHHHHHHHHT-TC---CEEEEEESSCCHHHHTSTTEEEEECCSHHHHHHHHHHHHHTTSCS
T ss_pred hcCCCeEEEeCCC--CHHHHHHHHHHHHc-CC---ceEEEEcCHHHHhhhccCCCEEECCCChHHHHHHHHHHHHCCCCC
Confidence 3456789888765 58999999999885 21 12344443221 0 111222 233333 489
Q ss_pred eEEEcccccCCCCchhhHHHhhhhcccEeecccccccC--CCCccEEEEccCCcceeecccccccCceEEEeEe---ecH
Q psy559 102 VAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRCR--QQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKI---ITA 176 (376)
Q Consensus 102 ail~G~i~~p~~~~~~~~~LR~~~ldLyan~~pg~~~~--~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~---~Tr 176 (376)
+.++|.++|. -.|| ..|+ ..+|++.. ...+-++++ ....|.+. ..|+-+ -|.
T Consensus 89 a~vsG~~~t~-------~~lr-~~l~----~~~G~r~~~~vs~~~~~~~-p~~~~~~~----------~~D~gvN~~P~~ 145 (291)
T 3uf6_A 89 ILVKGFIPTA-------TLMH-HVLK----KENGLRTDQLLSQIAIFDI-PTYHKPLL----------ITDCAMNVAPKT 145 (291)
T ss_dssp EEEECSSCHH-------HHHH-HHTC----GGGSCCCSSCCEEEEEEEC-TTSSSCEE----------EECSSSCSSCCH
T ss_pred EEEECCCChH-------HHHH-HHhc----cccCCCCCceeeEEEEEEE-cCCCCcEE----------EeeceeecCCCH
Confidence 9999987542 1233 2221 12333110 001112222 21122211 111111 256
Q ss_pred HHHHHHHHHHHHHHHhCCCC--cEEEE---ecCCccccchHHHHHHHHHHHhh-CCCeeeee-eeHHHHHHHHH------
Q psy559 177 ANSYRLSKYAFEYAKKFGRK--KVTTV---HKANIMKISDGLFLEISRKVAKE-YPEIEHND-MIIDNTCMQLV------ 243 (376)
Q Consensus 177 ~~~eRiar~AFe~A~~r~rk--~Vt~v---~KaNvl~~sdglf~~~~~eva~e-yP~I~~e~-~~vD~~~~~Lv------ 243 (376)
+..-.|+..+-++|++-|-. ||-+. +|.|-. ...-++.. ++.++ .|++.++- +..|++...=+
T Consensus 146 e~la~ia~~aa~~ar~~Gie~PkVAlLS~s~~gs~~---~~~~~~A~-~llk~~~~~~~vdGel~~D~Al~~~~~~~k~p 221 (291)
T 3uf6_A 146 KEKIAITENALAVAHQIGITNPKIALLSAVEEVTAK---MPSTLEAQ-EVVQHFGNQISVSGPLALDVAISKEAALHKGI 221 (291)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCCEEEECSCSSCCTT---SHHHHHHH-HHHHHHTTTSCEEEEECHHHHHCHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEeCCccCCcC---chHHHHHH-HHHHhhCCCCEEEecchHHHhcCHHHHHhhCC
Confidence 77778888889999986643 66554 444421 11223333 34444 49988864 55888754322
Q ss_pred hCC--CCccEEecCCcc-hhhHhhhhhhhcC
Q psy559 244 SNP--KQFDVMVMPNLY-GAITSNVICGLIG 271 (376)
Q Consensus 244 ~~P--~~fdViV~~Nlf-GDILSDlaa~l~G 271 (376)
.+| ++.||+|+||+. |+|+--+..-+.|
T Consensus 222 ~s~vaG~Anvli~P~l~agNi~yK~l~~~~~ 252 (291)
T 3uf6_A 222 TDSSAGEADILIAPNIETGNALYKSLVYFAG 252 (291)
T ss_dssp CCTTTTCCSEEECSSHHHHHHHHHHHHHHSC
T ss_pred CCccCCCCCEEEECChHHHHHHHHHHHHhcC
Confidence 233 478999999995 9999888776654
No 49
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=57.39 E-value=36 Score=29.80 Aligned_cols=75 Identities=11% Similarity=-0.001 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhC----CCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeee-----H---HHHHHHHHhCCCCc
Q psy559 182 LSKYAFEYAKKF----GRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMI-----I---DNTCMQLVSNPKQF 249 (376)
Q Consensus 182 iar~AFe~A~~r----~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~-----v---D~~~~~Lv~~P~~f 249 (376)
..+.+.++..++ |.+||-++.-..-.. +.....+-+++..+++|++++.... . -..+.++++...++
T Consensus 110 ~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (276)
T 3ksm_A 110 AGQLAARALLATLDLSKERNIALLRLRAGNA-STDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETPTI 188 (276)
T ss_dssp HHHHHHHHHHHHSCTTSCEEEEECBCCTTCH-HHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHhcCcCCCceEEEEEcCCCch-hHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCCCc
Confidence 344455555554 788888886432221 3345666777777888988764322 1 23445666655678
Q ss_pred cEEecCCc
Q psy559 250 DVMVMPNL 257 (376)
Q Consensus 250 dViV~~Nl 257 (376)
|.|++.|=
T Consensus 189 ~ai~~~~d 196 (276)
T 3ksm_A 189 DGLFTPNE 196 (276)
T ss_dssp CEEECCSH
T ss_pred eEEEECCc
Confidence 99999873
No 50
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=52.89 E-value=1.2e+02 Score=26.77 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCC-Ceeee--------eeeHHHHHHHHHhCCCCccE
Q psy559 181 RLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYP-EIEHN--------DMIIDNTCMQLVSNPKQFDV 251 (376)
Q Consensus 181 Riar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP-~I~~e--------~~~vD~~~~~Lv~~P~~fdV 251 (376)
...+.|.++-.++|.+|+-++.-..-.. +.....+-+++..+++. .+... ..-.-.++.++++...++|.
T Consensus 113 ~~g~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 191 (288)
T 3gv0_A 113 AYAYEAVERLAQCGRKRIAVIVPPSRFS-FHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDG 191 (288)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCTTSH-HHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcCCcccc-hHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcE
Confidence 4555666676777888988885332221 12233344555444442 21111 11112456677777778999
Q ss_pred EecCC
Q psy559 252 MVMPN 256 (376)
Q Consensus 252 iV~~N 256 (376)
|+|.|
T Consensus 192 i~~~~ 196 (288)
T 3gv0_A 192 IVSIS 196 (288)
T ss_dssp EEESC
T ss_pred EEEcC
Confidence 99988
No 51
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=47.45 E-value=65 Score=29.38 Aligned_cols=74 Identities=11% Similarity=-0.043 Sum_probs=43.8
Q ss_pred HHHHHHHHHHh--CCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeee-----HH---HHHHHHHhC-CCCcc
Q psy559 182 LSKYAFEYAKK--FGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMI-----ID---NTCMQLVSN-PKQFD 250 (376)
Q Consensus 182 iar~AFe~A~~--r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~-----vD---~~~~~Lv~~-P~~fd 250 (376)
..+.|.++..+ +|.+||-++.-..-.. +.....+-+++..+++|++++...+ .+ .++.+|++. ..++|
T Consensus 121 ~g~~a~~~L~~~~~G~~~I~~i~g~~~~~-~~~~R~~Gf~~al~~~pgi~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 199 (332)
T 2rjo_A 121 YGEETATQLFKSMGGKGGVVALGGIFSNV-PAIERKAGLDAALKKFPGIQLLDFQVADWNSQKAFPIMQAWMTRFNSKIK 199 (332)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECCTTCH-HHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHHGGGEE
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCc-cHHHHHHHHHHHHHhCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCCCee
Confidence 34445555555 5778888876331111 2234555666666778888764322 12 234566665 56789
Q ss_pred EEecCC
Q psy559 251 VMVMPN 256 (376)
Q Consensus 251 ViV~~N 256 (376)
.|++.|
T Consensus 200 aI~~~n 205 (332)
T 2rjo_A 200 GVWAAN 205 (332)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 999987
No 52
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=47.16 E-value=43 Score=26.95 Aligned_cols=58 Identities=12% Similarity=-0.002 Sum_probs=39.2
Q ss_pred CCeeeEEEEcCCCCCHHHH-HHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHHhcCeEEEccc
Q psy559 41 GGRNAVTMLPGGGIGPELM-SYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNI 108 (376)
Q Consensus 41 ~~~~~I~vipGDGIGpEV~-~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~~dail~G~i 108 (376)
.++++|.++=+.|....++ ....+..+.-+++++..-...+... +.+.++|++|+||=
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~----------~~~~~~DvvLLgPQ 62 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHY----------DIMGVYDLIILAPQ 62 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCT----------TTGGGCSEEEECGG
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHH----------hhccCCCEEEEChH
Confidence 4678999999999888764 3344455555888877665554321 22357999999993
No 53
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=45.50 E-value=11 Score=36.65 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=18.1
Q ss_pred CCeeeEEEEcCC--CCCHHHHHHHH
Q psy559 41 GGRNAVTMLPGG--GIGPELMSYVK 63 (376)
Q Consensus 41 ~~~~~I~vipGD--GIGpEV~~aa~ 63 (376)
.++.+|++-.|| ||||||+-.+.
T Consensus 6 ~~~~kIaIT~GDPaGIGpEIilKa~ 30 (349)
T 4aty_A 6 DRAMTVALAIGDPNGIGPEIAVKAA 30 (349)
T ss_dssp -CCCCEEEECCCTTSSHHHHHHHHH
T ss_pred CCCCeEEEECCCcchhHHHHHHHHH
Confidence 457899999997 99999975443
No 54
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=44.86 E-value=71 Score=28.23 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHHHHHH-h-CCCCc--EEEEe-cCCccccchHHHHHHHHHHHhhCCCeeeeeee-----HH---HHHHH
Q psy559 175 TAANSYRLSKYAFEYAK-K-FGRKK--VTTVH-KANIMKISDGLFLEISRKVAKEYPEIEHNDMI-----ID---NTCMQ 241 (376)
Q Consensus 175 Tr~~~eRiar~AFe~A~-~-r~rk~--Vt~v~-KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~-----vD---~~~~~ 241 (376)
...+.+..+++..+... . +|.+| |.++. ..+.. +.....+-+++..+++|++++...+ .+ .++.+
T Consensus 107 ~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~--~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 184 (290)
T 2fn9_A 107 NYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQ--PTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQ 184 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCH--HHHHHHHHHHHHHTTSTTEEEEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCc--hHHHHHHHHHHHHHhCCCCEEEEeccCCCCHHHHHHHHHH
Confidence 34555556666555422 1 15677 65554 22221 2234556677777778887654321 22 24456
Q ss_pred HHhCCCCccEEecCC
Q psy559 242 LVSNPKQFDVMVMPN 256 (376)
Q Consensus 242 Lv~~P~~fdViV~~N 256 (376)
+++...++|.|++.|
T Consensus 185 ll~~~~~~~ai~~~~ 199 (290)
T 2fn9_A 185 ILQAHPEIKAIWCGN 199 (290)
T ss_dssp HHHHCTTCCEEEESS
T ss_pred HHHhCCCCcEEEECC
Confidence 666555699999987
No 55
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=44.77 E-value=19 Score=35.33 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=34.3
Q ss_pred HHhCCCCcEEEEecCCccccchHHHHHHHHHHH--hhCCC-eeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhH
Q psy559 190 AKKFGRKKVTTVHKANIMKISDGLFLEISRKVA--KEYPE-IEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAIT 262 (376)
Q Consensus 190 A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva--~eyP~-I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDIL 262 (376)
|.+.|.++|+.|++.++. +.++++. +.+.+ |++-+.-+.. +.-|++|||||++ ++|..|
T Consensus 101 Aa~aGA~~V~ave~s~~~--------~~a~~~~~~n~~~~~i~~i~~~~~~-----~~lpe~~DvivsE-~~~~~l 162 (376)
T 4hc4_A 101 CAQAGARRVYAVEASAIW--------QQAREVVRFNGLEDRVHVLPGPVET-----VELPEQVDAIVSE-WMGYGL 162 (376)
T ss_dssp HHHTTCSEEEEEECSTTH--------HHHHHHHHHTTCTTTEEEEESCTTT-----CCCSSCEEEEECC-CCBTTB
T ss_pred HHHhCCCEEEEEeChHHH--------HHHHHHHHHcCCCceEEEEeeeeee-----ecCCccccEEEee-cccccc
Confidence 445578899999976532 2334432 23333 5554433322 2468999999974 445444
No 56
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=44.57 E-value=59 Score=24.79 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=45.8
Q ss_pred EEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCee
Q psy559 168 VESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIE 229 (376)
Q Consensus 168 a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~ 229 (376)
-+|+.=.|.+++.+.....++-|..+|.+.|.++|= + ..|.-++.+.++-+++|.|.
T Consensus 6 ~lDLhG~~~~eA~~~l~~fl~~a~~~g~~~v~IIHG----k-G~GvLr~~V~~~L~~~~~V~ 62 (83)
T 2zqe_A 6 EVDLRGLTVAEALLEVDQALEEARALGLSTLRLLHG----K-GTGALRQAIREALRRDKRVE 62 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECC----S-TTSHHHHHHHHHHHHCTTEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC----C-CchHHHHHHHHHHhcCCcee
Confidence 356666788899999999999999999999999992 2 34678888888877788775
No 57
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=43.59 E-value=80 Score=28.20 Aligned_cols=175 Identities=10% Similarity=0.086 Sum_probs=87.3
Q ss_pred CCeeeEEEEcCCCCCH----HHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCCC
Q psy559 41 GGRNAVTMLPGGGIGP----ELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSLD 114 (376)
Q Consensus 41 ~~~~~I~vipGDGIGp----EV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~~ 114 (376)
++..+|+++--+--.| ++.....+.++..|..+.+.. ... +.....+.++.+ ++.|.++..+...+.
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~---~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-- 83 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIAN--TGG---SSEREVEIWKMFQSHRIDGVLYVTMYRRI-- 83 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEE--CTT---CHHHHHHHHHHHHHTTCSEEEEEEEEEEE--
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEe--CCC---ChHHHHHHHHHHHhCCCCEEEEecCCccH--
Confidence 4567888776554332 888888888888886665532 111 000122344444 368888876653211
Q ss_pred chhhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCC
Q psy559 115 SLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFG 194 (376)
Q Consensus 115 ~~~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~ 194 (376)
....++ ..++.+|++-...++. + ..+ .+..- -....+.|.++-.++|
T Consensus 84 --~~~~~~-----------------~~~iPvV~~~~~~~~~----~--~~~----~V~~D----~~~~g~~a~~~L~~~G 130 (301)
T 3miz_A 84 --VDPESG-----------------DVSIPTVMINCRPQTR----E--LLP----SIEPD----DYQGARDLTRYLLERG 130 (301)
T ss_dssp --CCCCCT-----------------TCCCCEEEEEEECSST----T--SSC----EEEEC----HHHHHHHHHHHHHTTT
T ss_pred --HHHHHH-----------------hCCCCEEEECCCCCCC----C--CCC----EEeeC----hHHHHHHHHHHHHHcC
Confidence 000111 1356666663211110 0 001 11111 2345566666767778
Q ss_pred CCcEEEEecCCccccchHHHHHHHHHHHhhC-CCe---ee----------eeeeHHHHHHHHHhCCCCccEEecCC
Q psy559 195 RKKVTTVHKANIMKISDGLFLEISRKVAKEY-PEI---EH----------NDMIIDNTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 195 rk~Vt~v~KaNvl~~sdglf~~~~~eva~ey-P~I---~~----------e~~~vD~~~~~Lv~~P~~fdViV~~N 256 (376)
.+||-++.-..-.. +.....+-+++..+++ ..+ .+ +.-++..++.++++...++|.|+|.|
T Consensus 131 ~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 205 (301)
T 3miz_A 131 HRRIGYIRLNPILL-GAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMSGN 205 (301)
T ss_dssp CCSEEEEECCTTSH-HHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEESS
T ss_pred CCeEEEEecCccch-hHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEEECC
Confidence 88988886432221 2223334444433332 111 11 11112266777778777899999987
No 58
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for structural genomics of infectious diseases, csgid; HET: TRS; 1.44A {Staphylococcus aureus subsp}
Probab=41.48 E-value=83 Score=30.20 Aligned_cols=99 Identities=17% Similarity=0.111 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHHHHHHHhCCC-CcEEEEecCCcc-ccc--hHHHHHHHHHHHhhCC----Ceeee-eeeHHHHHHHH---
Q psy559 175 TAANSYRLSKYAFEYAKKFGR-KKVTTVHKANIM-KIS--DGLFLEISRKVAKEYP----EIEHN-DMIIDNTCMQL--- 242 (376)
Q Consensus 175 Tr~~~eRiar~AFe~A~~r~r-k~Vt~v~KaNvl-~~s--dglf~~~~~eva~eyP----~I~~e-~~~vD~~~~~L--- 242 (376)
|.+....|+..+-++|+.-|- -||-+..=.+.- ... ...-++.++-+.+.+| ++.++ ++..|++.-.=
T Consensus 177 ~~e~l~~ia~~a~~~a~~~Gi~PkVAlLs~s~~Gs~~~~~~~~~~~A~~llk~~~~~~~~~~~vdGpl~~D~A~~~~~~~ 256 (331)
T 4e4r_A 177 DSQGLAEIAVESAKSALSFGMDPKVAMLSFSTKGSAKSDDVTKVQEAVKLAQQKAEEEKLEAIIDGEFQFDAAIVPGVAE 256 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCEEEEECSSSTTSSCSHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECHHHHHCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeCCCCCCCCCCCcHHHHHHHHHHHhhCcCCCCCeEEEccCcHHHHcCHHHHH
Confidence 567778888999999998663 356555432211 111 1233444444444566 87774 56688876332
Q ss_pred ---HhCC--CCccEEecCCcc-hhhHhhhhhhhcCCc
Q psy559 243 ---VSNP--KQFDVMVMPNLY-GAITSNVICGLIGGA 273 (376)
Q Consensus 243 ---v~~P--~~fdViV~~Nlf-GDILSDlaa~l~Ggl 273 (376)
..+| .++||+|+||+. |+|+--+..-+.|+.
T Consensus 257 ~k~~~s~vaG~advli~P~l~aGNi~~K~l~~~~~a~ 293 (331)
T 4e4r_A 257 KKAPGAKLQGDANVFVFPSLEAGNIGYKIAQRLGGYD 293 (331)
T ss_dssp HHSTTCSCSSCCCEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred hhCCCCccCCcCCEEEeCChhHHHHHHHHHHHhcCCe
Confidence 2333 589999999997 999988887666654
No 59
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=39.59 E-value=68 Score=27.90 Aligned_cols=173 Identities=10% Similarity=0.019 Sum_probs=87.1
Q ss_pred eeeEEEEcCCCCCH---HHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCCCchh
Q psy559 43 RNAVTMLPGGGIGP---ELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSLDSLW 117 (376)
Q Consensus 43 ~~~I~vipGDGIGp---EV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~~~~~ 117 (376)
.++|+++--+--.| ++.....+.++..|..+.+. .... +.....+.++.+ ++.|+++..+..... ...
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~---~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--~~~ 74 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIA--SSDD---QPDSERQLQQLFRARRCDALFVASCLPPE--DDS 74 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEE--ECTT---CHHHHHHHHHHHHHTTCSEEEECCCCCSS--CCH
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEE--eCCC---CHHHHHHHHHHHHHcCCCEEEEecCcccc--HHH
Confidence 46788777664443 45555555566566655543 2211 000122344444 358888887764211 122
Q ss_pred hHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCc
Q psy559 118 TLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKK 197 (376)
Q Consensus 118 ~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~ 197 (376)
.-.++ ..++.+|++-...++. .. -.+..- -....+.|.++-.++|.+|
T Consensus 75 ~~~~~-----------------~~~iPvV~~~~~~~~~----------~~-~~V~~d----~~~~~~~a~~~L~~~G~~~ 122 (272)
T 3o74_A 75 YRELQ-----------------DKGLPVIAIDRRLDPA----------HF-CSVISD----DRDASRQLAASLLSSAPRS 122 (272)
T ss_dssp HHHHH-----------------HTTCCEEEESSCCCTT----------TC-EEEEEC----HHHHHHHHHHHHHTTCCSE
T ss_pred HHHHH-----------------HcCCCEEEEccCCCcc----------cc-CEEEEc----hHHHHHHHHHHHHHCCCcE
Confidence 22333 1256666663322210 00 011111 2334566677777778888
Q ss_pred EEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeee-----HH---HHHHHHHhCCC-CccEEecCC
Q psy559 198 VTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMI-----ID---NTCMQLVSNPK-QFDVMVMPN 256 (376)
Q Consensus 198 Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~-----vD---~~~~~Lv~~P~-~fdViV~~N 256 (376)
+-++.-..-.. +.....+-+++..++++ ++..... .+ .++.++++... .+|.|++.|
T Consensus 123 i~~i~~~~~~~-~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~ 188 (272)
T 3o74_A 123 IALIGARPELS-VSQARAGGFDEALQGYT-GEVRRYQGEAFSRECGQRLMQQLIDDLGGLPDALVTTS 188 (272)
T ss_dssp EEEEEECTTSH-HHHHHHHHHHHHTTTCC-SEEEEEEESSSSHHHHHHHHHHHHHHHTSCCSEEEESS
T ss_pred EEEEecCCCCc-cHHHHHHHHHHHHHHcC-CChheeecCCCCHHHHHHHHHHHHhcCCCCCcEEEEeC
Confidence 88875432222 23445566666666664 3332221 22 33455665544 899999987
No 60
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=38.73 E-value=1e+02 Score=27.93 Aligned_cols=75 Identities=9% Similarity=0.024 Sum_probs=41.6
Q ss_pred HHHHHHHHHh--CCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeee-----HH---HHHHHHHhCCCCccEE
Q psy559 183 SKYAFEYAKK--FGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMI-----ID---NTCMQLVSNPKQFDVM 252 (376)
Q Consensus 183 ar~AFe~A~~--r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~-----vD---~~~~~Lv~~P~~fdVi 252 (376)
.+.|.++..+ .|.+||-++.-..-.. +.....+-+++..+++|++++.... .+ .++.+++.....+|.|
T Consensus 114 g~~a~~~L~~~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~pg~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI 192 (325)
T 2x7x_A 114 GRSVGNYIASSLKGKGNIVELTGLSGST-PAMERHQGFMAAISKFPDIKLIDKADAAWERGPAEIEMDSMLRRHPKIDAV 192 (325)
T ss_dssp HHHHHHHHHHHTTTEEEEEEEESCTTSH-HHHHHHHHHHHHHHTCTEEEEEEEEECTTSHHHHHHHHHHHHHHCSCCCEE
T ss_pred HHHHHHHHHHHcCCCceEEEEECCCCCc-cHHHHHHHHHHHHHhCCCCEEEeeecCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 3444444444 3677888775321111 2234455666666778888764321 12 2345666554568999
Q ss_pred ecCCcc
Q psy559 253 VMPNLY 258 (376)
Q Consensus 253 V~~Nlf 258 (376)
++.|-.
T Consensus 193 ~~~nd~ 198 (325)
T 2x7x_A 193 YAHNDR 198 (325)
T ss_dssp EESSTT
T ss_pred EECCCc
Confidence 988743
No 61
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=38.35 E-value=1e+02 Score=28.03 Aligned_cols=66 Identities=8% Similarity=0.006 Sum_probs=43.9
Q ss_pred CCCeeeEEEEcCC----CCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCC---CC---hHHHHHHHHhcCeEEEcc
Q psy559 40 YGGRNAVTMLPGG----GIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSN---DD---LEYAITSIRRNGVAIKGN 107 (376)
Q Consensus 40 ~~~~~~I~vipGD----GIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~---~~---~~~~~~~~~~~dail~G~ 107 (376)
....++|.+|-|- |....+++++.+.++..+.+ ++.+++....... .. ..+..+.++++|+++++.
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~e--ve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~s 106 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAE--VKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVS 106 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCE--EEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEE
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCE--EEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEe
Confidence 3456799999886 56677888888777766654 4445555432211 11 345678889999999865
No 62
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=36.45 E-value=1.4e+02 Score=24.29 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=35.5
Q ss_pred HHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhC---CCeeeeeeeHHHHHHHHHhCCCCccEEecCCcch
Q psy559 188 EYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY---PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYG 259 (376)
Q Consensus 188 e~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~ey---P~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfG 259 (376)
.+++ ++..+|+.+|.. .-..+.+++-.+.+ +.+++...-+......+-..+..||+|++...|.
T Consensus 61 ~~~~-~~~~~v~~vD~~-------~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~ 127 (187)
T 2fhp_A 61 EAVS-RGMDKSICIEKN-------FAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA 127 (187)
T ss_dssp HHHH-TTCSEEEEEESC-------HHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred HHHH-cCCCEEEEEECC-------HHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 3344 345789999843 23334444433322 3455554444443334444578999999876665
No 63
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=36.31 E-value=70 Score=32.61 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=41.3
Q ss_pred HHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcch
Q psy559 186 AFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYG 259 (376)
Q Consensus 186 AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfG 259 (376)
+..+|+. | -.||-+| + + .--.+++++-+++.+.+.+++...|.-..---..+.+||||++--++=
T Consensus 81 ~~~la~~-g-a~V~giD----~--~-~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~e 145 (569)
T 4azs_A 81 SLSLASK-G-ATIVGID----F--Q-QENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFH 145 (569)
T ss_dssp HHHHHHT-T-CEEEEEE----S--C-HHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHH
T ss_pred HHHHHhC-C-CEEEEEC----C--C-HHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchh
Confidence 3445554 3 5799998 2 2 355677887777777666665555443221123578999999987774
No 64
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=35.81 E-value=2.4e+02 Score=25.25 Aligned_cols=102 Identities=12% Similarity=0.141 Sum_probs=55.2
Q ss_pred CCCeeEEEEEccccCCCCCChHH-HHHHH--HhcCeEEEcccccCCCC----chh-hHHHhhhhcccEeecccccccCCC
Q psy559 70 GVPVDFETVQIDPKSDSNDDLEY-AITSI--RRNGVAIKGNIETGSLD----SLW-TLKLCRLILRVIAMMILSVRCRQQ 141 (376)
Q Consensus 70 ~~~ie~~~~~~g~~~~~~~~~~~-~~~~~--~~~dail~G~i~~p~~~----~~~-~~~LR~~~ldLyan~~pg~~~~~~ 141 (376)
++++++.....| .+.+ .++.+ .++|.+++|.-+..... .+. .-.+| .-
T Consensus 86 ~v~~~~~~~~~g-------~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~-----------------~~ 141 (319)
T 3olq_A 86 GIQIDIKVIWHN-------RPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLR-----------------KC 141 (319)
T ss_dssp TCCEEEEEEECS-------CHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHH-----------------HC
T ss_pred CCeEEEEEEecC-------ChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHh-----------------cC
Confidence 677777543222 2333 34444 35899999997643211 111 11233 13
Q ss_pred CccEEEEccCCcceeecccccccCceEEEeEeecH-----HHHHHHHHHHHHHHHhCC-CCcEEEEec
Q psy559 142 GIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITA-----ANSYRLSKYAFEYAKKFG-RKKVTTVHK 203 (376)
Q Consensus 142 ~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr-----~~~eRiar~AFe~A~~r~-rk~Vt~v~K 203 (376)
+.+++||++.... ....+.+.+.--.. ..+++.+++|+++|+... ..+|+++|=
T Consensus 142 ~~PVlvv~~~~~~--------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v 201 (319)
T 3olq_A 142 PAPVWMVKDKEWP--------EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSA 201 (319)
T ss_dssp SSCEEEEESSCCC--------TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred CCCEEEecCcccc--------cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 5789999975421 11123333322211 157899999999999861 256777764
No 65
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=35.02 E-value=40 Score=27.68 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEec
Q psy559 177 ANSYRLSKYAFEYAKKFGRKKVTTVHK 203 (376)
Q Consensus 177 ~~~eRiar~AFe~A~~r~rk~Vt~v~K 203 (376)
+.+++.+++|.++|++.+ .+|+++|=
T Consensus 36 ~~s~~al~~A~~la~~~~-a~l~llhV 61 (155)
T 3dlo_A 36 DRAERVLRFAAEEARLRG-VPVYVVHS 61 (155)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CEEEEEEE
Confidence 568999999999999864 57777763
No 66
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=34.48 E-value=2e+02 Score=25.90 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=41.0
Q ss_pred HHHHHHHHHHh---CCCCcEEEEecCCccccchHHHHHHHHHHH-hhCCCeeeeee-----eHH---HHHHHHHhCCCCc
Q psy559 182 LSKYAFEYAKK---FGRKKVTTVHKANIMKISDGLFLEISRKVA-KEYPEIEHNDM-----IID---NTCMQLVSNPKQF 249 (376)
Q Consensus 182 iar~AFe~A~~---r~rk~Vt~v~KaNvl~~sdglf~~~~~eva-~eyP~I~~e~~-----~vD---~~~~~Lv~~P~~f 249 (376)
..+.+.++..+ +|++++.++.=..-.. ....|.+-+.+.. +.+|++++... -.+ ..+.+|++...++
T Consensus 112 ~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~-~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 190 (316)
T 1tjy_A 112 LGSMLVEMAAHQVDKEKAKVAFFYSSPTVT-DQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDL 190 (316)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEEESCSSCH-HHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHcCCCCCEEEEEEcCCCCh-hHHHHHHHHHHHHHhhCCCcEEEEeccCCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444 4677887775321111 2346666666654 45888765332 122 2234455543469
Q ss_pred cEEecCCc
Q psy559 250 DVMVMPNL 257 (376)
Q Consensus 250 dViV~~Nl 257 (376)
|.|++.|=
T Consensus 191 ~aI~~~nD 198 (316)
T 1tjy_A 191 DAIIAPDA 198 (316)
T ss_dssp CEEEECST
T ss_pred CEEEECCC
Confidence 99999883
No 67
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=34.27 E-value=1.7e+02 Score=25.35 Aligned_cols=75 Identities=11% Similarity=-0.018 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCC-Cee---e--eeeeHH---HHHHHHHhCCCCccE
Q psy559 181 RLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYP-EIE---H--NDMIID---NTCMQLVSNPKQFDV 251 (376)
Q Consensus 181 Riar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP-~I~---~--e~~~vD---~~~~~Lv~~P~~fdV 251 (376)
+..+.|.++..++|.++|.++.-..-.. +.....+-+++..+++. .+. + ...-.+ ..+.++++.+..+|.
T Consensus 106 ~~~~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 184 (275)
T 3d8u_A 106 EVGKACTRHLIEQGFKNVGFIGARGNHS-TLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNA 184 (275)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEECSCSSH-HHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcCCCCCc-hHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCE
Confidence 3445556666666888888775332111 11233344444444431 111 1 111222 345667777678999
Q ss_pred EecCC
Q psy559 252 MVMPN 256 (376)
Q Consensus 252 iV~~N 256 (376)
|++.|
T Consensus 185 i~~~~ 189 (275)
T 3d8u_A 185 LVCSH 189 (275)
T ss_dssp EEESS
T ss_pred EEEcC
Confidence 99987
No 68
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=33.96 E-value=2.5e+02 Score=24.93 Aligned_cols=118 Identities=11% Similarity=0.052 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHH-HHHH--HHhcCeEEEcccccCCCC----chh-hHHHhhh
Q psy559 53 GIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEY-AITS--IRRNGVAIKGNIETGSLD----SLW-TLKLCRL 124 (376)
Q Consensus 53 GIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~-~~~~--~~~~dail~G~i~~p~~~----~~~-~~~LR~~ 124 (376)
.-..+..+...+-++..++++++....-| .+.+ .++. -+++|.+++|.-+..... .+. .-.+|
T Consensus 47 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g-------~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~-- 117 (290)
T 3mt0_A 47 RDHSAALNDLAQELREEGYSVSTNQAWKD-------SLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLR-- 117 (290)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEEECSS-------SHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEEeCC-------CHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHh--
Confidence 44566777777777777888777543211 2333 3344 256899999987643211 111 11233
Q ss_pred hcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEe--EeecHH---HHHHHHHHHHHHHHhCCCCcEE
Q psy559 125 ILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESM--KIITAA---NSYRLSKYAFEYAKKFGRKKVT 199 (376)
Q Consensus 125 ~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~--~~~Tr~---~~eRiar~AFe~A~~r~rk~Vt 199 (376)
.-+.++++|++...- . ...+...+ ...+.. -+++.+++|+++|+..+ .+|+
T Consensus 118 ---------------~~~~PVlvv~~~~~~---~-----~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~-a~l~ 173 (290)
T 3mt0_A 118 ---------------FAPCPVLMTKTARPW---T-----GGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAK-ATLH 173 (290)
T ss_dssp ---------------HCSSCEEEECCCSCS---T-----TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTT-CEEE
T ss_pred ---------------cCCCCEEEecCCCCC---C-----CCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcC-CeEE
Confidence 136789999954321 1 11222222 222111 17899999999999874 6788
Q ss_pred EEec
Q psy559 200 TVHK 203 (376)
Q Consensus 200 ~v~K 203 (376)
++|=
T Consensus 174 ll~v 177 (290)
T 3mt0_A 174 VISA 177 (290)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8763
No 69
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=33.81 E-value=1.2e+02 Score=26.73 Aligned_cols=175 Identities=10% Similarity=0.051 Sum_probs=84.2
Q ss_pred eeeEEEEcCCCCCH---HHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCC--Cc
Q psy559 43 RNAVTMLPGGGIGP---ELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSL--DS 115 (376)
Q Consensus 43 ~~~I~vipGDGIGp---EV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~--~~ 115 (376)
+++|+++--+--.| ++.....+.++..|..+.+. ..... .....+.++.+ ++.|+++.-+...+.. ..
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~---~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 89 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLT--STNNN---PDNERRGLENLLSQHIDGLIVEPTKSALQTPNI 89 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEE--ECTTC---HHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTH
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEE--eCCCC---hHHHHHHHHHHHHCCCCEEEEecccccccCCcH
Confidence 47899887664433 56666666666667655543 21110 00122344444 4588998877643211 11
Q ss_pred hhhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCCC
Q psy559 116 LWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGR 195 (376)
Q Consensus 116 ~~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~r 195 (376)
...-.++ ..++.+|++-...++. . .+ .+..-. ....+.|.++-.++|.
T Consensus 90 ~~~~~~~-----------------~~~iPvV~~~~~~~~~--~-----~~----~V~~d~----~~~~~~a~~~L~~~G~ 137 (298)
T 3tb6_A 90 GYYLNLE-----------------KNGIPFAMINASYAEL--A-----AP----SFTLDD----VKGGMMAAEHLLSLGH 137 (298)
T ss_dssp HHHHHHH-----------------HTTCCEEEESSCCTTC--S-----SC----EEEECH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-----------------hcCCCEEEEecCcCCC--C-----CC----EEEeCc----HHHHHHHHHHHHHCCC
Confidence 1122233 1356677664322221 0 01 111111 2345556666666788
Q ss_pred CcEEEEecCCccccchHHHHHHHHHHHhhC----CCeeeeeeeH-------HHHHHHHHh-CCCC-ccEEecCC
Q psy559 196 KKVTTVHKANIMKISDGLFLEISRKVAKEY----PEIEHNDMII-------DNTCMQLVS-NPKQ-FDVMVMPN 256 (376)
Q Consensus 196 k~Vt~v~KaNvl~~sdglf~~~~~eva~ey----P~I~~e~~~v-------D~~~~~Lv~-~P~~-fdViV~~N 256 (376)
+++-++.-..-. +.....+-+.+..+++ +...+....- -.++.++++ +|.. +|.|++.|
T Consensus 138 ~~i~~i~~~~~~--~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~ 209 (298)
T 3tb6_A 138 THMMGIFKADDT--QGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYN 209 (298)
T ss_dssp CSEEEEEESSSH--HHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSS
T ss_pred CcEEEEcCCCCc--cHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeC
Confidence 888877643321 2233444555544443 1111111111 123445555 4543 99999988
No 70
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=33.27 E-value=98 Score=29.04 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=40.4
Q ss_pred CCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeH---HHHHHHH---HhCCCCccEEecCCc
Q psy559 195 RKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMII---DNTCMQL---VSNPKQFDVMVMPNL 257 (376)
Q Consensus 195 rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~v---D~~~~~L---v~~P~~fdViV~~Nl 257 (376)
+..||+.+=. .+..+.+++++..++||+|+++...+ |....+| +..-..+||+...+-
T Consensus 29 ~~~l~~~~~~-----~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~~ 92 (414)
T 3quf_A 29 KTKISFYSYF-----KDNQIGEVVKGFEKKNPDITLDVQYGQDPAQYISTLQTRLAGGKPPTIFNLTMD 92 (414)
T ss_dssp CEEEEEEESS-----CHHHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHHHHSSSCCSEEEECTT
T ss_pred CEEEEEEecC-----CchHHHHHHHHHHHHCcCeEEEEEeCCChHHHHHHHHHHHhCCCCCCEEEECCc
Confidence 3456665522 24588899999999999999998874 5554444 345568999887653
No 71
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=32.80 E-value=63 Score=28.49 Aligned_cols=175 Identities=11% Similarity=0.047 Sum_probs=89.0
Q ss_pred CCeeeEEEEcCCCCCH---HHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCCCc
Q psy559 41 GGRNAVTMLPGGGIGP---ELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSLDS 115 (376)
Q Consensus 41 ~~~~~I~vipGDGIGp---EV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~~~ 115 (376)
++.++|+++-.+--.| ++.....+.++..|..+.+ +..... .....+.++.+ ++.|+++..+... .
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~---~~~~~~~~~~l~~~~vdgiIi~~~~~----~ 75 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVL--FDANAD---IEREKTLLRAIGSRGFDGLILQSFSN----P 75 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEE--EECTTC---HHHHHHHHHHHHTTTCSEEEEESSCC----H
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEE--EeCCCC---HHHHHHHHHHHHhCCCCEEEEecCCc----H
Confidence 4667898877654333 3444444445545554444 222110 00112344444 4688888877543 1
Q ss_pred hhhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCCC
Q psy559 116 LWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGR 195 (376)
Q Consensus 116 ~~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~r 195 (376)
...-.++ ..++.+|++-...++. . .+ .+..- -....+.|.++-.++|.
T Consensus 76 ~~~~~l~-----------------~~~iPvV~i~~~~~~~----~---~~----~V~~D----~~~~g~~a~~~L~~~G~ 123 (276)
T 3jy6_A 76 QTVQEIL-----------------HQQMPVVSVDREMDAC----P---WP----QVVTD----NFEAAKAATTAFRQQGY 123 (276)
T ss_dssp HHHHHHH-----------------TTSSCEEEESCCCTTC----S---SC----EEECC----HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHH-----------------HCCCCEEEEecccCCC----C---CC----EEEEC----hHHHHHHHHHHHHHcCC
Confidence 2222233 1356677774322210 0 00 11111 23455666677777788
Q ss_pred CcEEEEecCCc-cccchHHHHHHHHHHHhhCCCeeeeee--eHH---HHHHHHHhCCCCccEEecCCc
Q psy559 196 KKVTTVHKANI-MKISDGLFLEISRKVAKEYPEIEHNDM--IID---NTCMQLVSNPKQFDVMVMPNL 257 (376)
Q Consensus 196 k~Vt~v~KaNv-l~~sdglf~~~~~eva~eyP~I~~e~~--~vD---~~~~~Lv~~P~~fdViV~~Nl 257 (376)
+++-++.-..- .. +.....+-+++..+++|.+.++.. .-+ ..+.+++....++|.|+|.|-
T Consensus 124 ~~I~~i~~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 190 (276)
T 3jy6_A 124 QHVVVLTSELELSR-TRQERYRGILAAAQDVDVLEVSESSYNHSEVHQRLTQLITQNDQKTVAFALKE 190 (276)
T ss_dssp CEEEEEEECSTTCH-HHHHHHHHHHTTCSEEEEEEECSSSCCHHHHHHHHHHHHHSSSSCEEEEESSH
T ss_pred CeEEEEecCCCCCc-hHHHHHHHHHHHHHhCCcEEEeccccCCcHHHHHHHHHHhcCCCCcEEEEeCc
Confidence 88888765432 21 234556667776666765444321 111 223344567778999999773
No 72
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=32.43 E-value=2.1e+02 Score=25.11 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhC-C-CCcEEEEec-CCccccchHHHHHHHHHHHhhCCCeeeeee-----eHH---HHHHHHHhCCCCcc
Q psy559 182 LSKYAFEYAKKF-G-RKKVTTVHK-ANIMKISDGLFLEISRKVAKEYPEIEHNDM-----IID---NTCMQLVSNPKQFD 250 (376)
Q Consensus 182 iar~AFe~A~~r-~-rk~Vt~v~K-aNvl~~sdglf~~~~~eva~eyP~I~~e~~-----~vD---~~~~~Lv~~P~~fd 250 (376)
..+.|-++-.+. | .+|+-++.- .+.. +.....+-+++..+++|++++... -.+ ..+.+|++.+.++|
T Consensus 108 ~g~~a~~~L~~~~gg~~~I~~i~g~~~~~--~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 185 (283)
T 2ioy_A 108 GGEMAAEFIAKALKGKGNVVELEGIPGAS--AARDRGKGFDEAIAKYPDIKIVAKQAADFDRSKGLSVMENILQAQPKID 185 (283)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECCTTCH--HHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHHHHcCCCceEEEEECCCCCc--cHHHHHHHHHHHHHhCCCCEEEeeccCCCCHHHHHHHHHHHHHhCCCcc
Confidence 344444444444 3 678877752 2221 122334556666677888765321 122 23455666555799
Q ss_pred EEecCC
Q psy559 251 VMVMPN 256 (376)
Q Consensus 251 ViV~~N 256 (376)
.|+|.|
T Consensus 186 ai~~~n 191 (283)
T 2ioy_A 186 AVFAQN 191 (283)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 999998
No 73
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=32.09 E-value=2.6e+02 Score=24.41 Aligned_cols=176 Identities=11% Similarity=0.095 Sum_probs=84.6
Q ss_pred CCeeeEEEEcCC-----C---CCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEccccc
Q psy559 41 GGRNAVTMLPGG-----G---IGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIET 110 (376)
Q Consensus 41 ~~~~~I~vipGD-----G---IGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~ 110 (376)
++.++|+++--+ - --.++.....+.++..|..+.+. ... .+.....+.++.+ ++.|+++.-+...
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~---~~~~~~~~~~~~~~~~~vdgiIi~~~~~ 80 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS--TGE---TEEEIFNGVVKMVQGRQIGGIILLYSRE 80 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC--CCC---SHHHHHHHHHHHHHTTCCCEEEESCCBT
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE--eCC---CCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 457789988655 2 23356666666666667554441 110 0000012344444 3588888766533
Q ss_pred CCCCchhhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHH
Q psy559 111 GSLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYA 190 (376)
Q Consensus 111 p~~~~~~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A 190 (376)
+. ...-.++ ..++.+|++-....+. + ..+ .+..-. ....+.|.++.
T Consensus 81 ~~---~~~~~l~-----------------~~~iPvV~~~~~~~~~----~--~~~----~V~~D~----~~~g~~a~~~L 126 (292)
T 3k4h_A 81 ND---RIIQYLH-----------------EQNFPFVLIGKPYDRK----D--EIT----YVDNDN----YTAAREVAEYL 126 (292)
T ss_dssp TC---HHHHHHH-----------------HTTCCEEEESCCSSCT----T--TSC----EEECCH----HHHHHHHHHHH
T ss_pred Ch---HHHHHHH-----------------HCCCCEEEECCCCCCC----C--CCC----EEEECc----HHHHHHHHHHH
Confidence 21 1122232 1256666663322110 0 000 111111 23455566666
Q ss_pred HhCCCCcEEEEecCCccccchHHHHHHHHHHHhhC-CCee-----eeeeeH---HHHHHHHHhCCCCccEEecCC
Q psy559 191 KKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY-PEIE-----HNDMII---DNTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 191 ~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~ey-P~I~-----~e~~~v---D~~~~~Lv~~P~~fdViV~~N 256 (376)
.++|.++|.++.-..-.. +.....+-+++..+++ ..+. ...... -..+.++++.+.++|.|++.|
T Consensus 127 ~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 200 (292)
T 3k4h_A 127 ISLGHKQIAFIGGGSDLL-VTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMATD 200 (292)
T ss_dssp HHTTCCCEEEEESCTTBH-HHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEESS
T ss_pred HHCCCceEEEEeCcccch-hHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEEcC
Confidence 667888888886432222 1223344444444443 1111 111112 234567777777899999987
No 74
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=31.30 E-value=2e+02 Score=25.32 Aligned_cols=72 Identities=11% Similarity=0.048 Sum_probs=39.3
Q ss_pred HHHHHHHHHhC-C--CCcEEEEe-cCCccccchHHHHHHHHHHHhhCCCeeeeeee-----HH---HHHHHHHhCCCCcc
Q psy559 183 SKYAFEYAKKF-G--RKKVTTVH-KANIMKISDGLFLEISRKVAKEYPEIEHNDMI-----ID---NTCMQLVSNPKQFD 250 (376)
Q Consensus 183 ar~AFe~A~~r-~--rk~Vt~v~-KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~-----vD---~~~~~Lv~~P~~fd 250 (376)
.+.|.++-.+. | +++|-++. ..+.. +...-.+-+++..+++|++++.... .+ .++.+|+..+.++|
T Consensus 118 g~~a~~~L~~~~G~~~~~I~~i~g~~~~~--~~~~R~~Gf~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 195 (288)
T 1gud_A 118 GAKGASFIIDKLGAEGGEVAIIEGKAGNA--SGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIK 195 (288)
T ss_dssp HHHHHHHHHHHHGGGCEEEEEEECSTTCH--HHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCCCCc--hHhHHHHHHHHHHHhCCCcEEEEeecCCccHHHHHHHHHHHHHhCCCce
Confidence 34444444444 5 67777775 32321 1223334555555678887643221 22 23456666556799
Q ss_pred EEecCC
Q psy559 251 VMVMPN 256 (376)
Q Consensus 251 ViV~~N 256 (376)
.|+|.|
T Consensus 196 ai~~~n 201 (288)
T 1gud_A 196 AIYCAN 201 (288)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 999987
No 75
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=31.24 E-value=1.3e+02 Score=26.60 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHh-CCCC-cEEEEec-CCccccchHHHHHHHHHHH-hhCCCeeeeee------eHH---HHHHHHHhCCC
Q psy559 181 RLSKYAFEYAKK-FGRK-KVTTVHK-ANIMKISDGLFLEISRKVA-KEYPEIEHNDM------IID---NTCMQLVSNPK 247 (376)
Q Consensus 181 Riar~AFe~A~~-r~rk-~Vt~v~K-aNvl~~sdglf~~~~~eva-~eyP~I~~e~~------~vD---~~~~~Lv~~P~ 247 (376)
...+.|.++..+ .|.+ |+.++.- .+.. +.....+-+++.. +.+|++++... ..+ ..+.++++...
T Consensus 111 ~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~--~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (303)
T 3d02_A 111 KFAAEYVEHMAKRMGGKGGYVIYVGSLTVP--QHNLWADLLVKYQKEHYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYP 188 (303)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEECSCSSCH--HHHHHHHHHHHHHHHHCTTEEESSSCBSCTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcCceEEEEecCCCCc--cHHHHHHHHHHHHHhhCCCCEEEEeecCCCCCHHHHHHHHHHHHHhCC
Confidence 344555555555 5655 7776642 2221 1223344455443 35787764321 122 23345555444
Q ss_pred CccEEecCC
Q psy559 248 QFDVMVMPN 256 (376)
Q Consensus 248 ~fdViV~~N 256 (376)
++|.|++.|
T Consensus 189 ~~~ai~~~~ 197 (303)
T 3d02_A 189 DLKAVVSFG 197 (303)
T ss_dssp TEEEEEESS
T ss_pred CCCEEEEeC
Confidence 699999988
No 76
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=30.87 E-value=1.2e+02 Score=24.18 Aligned_cols=59 Identities=14% Similarity=0.274 Sum_probs=41.1
Q ss_pred CCCeeeEEEEcCCCCCHHHH--HHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHHhcCeEEEccc
Q psy559 40 YGGRNAVTMLPGGGIGPELM--SYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNI 108 (376)
Q Consensus 40 ~~~~~~I~vipGDGIGpEV~--~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~~dail~G~i 108 (376)
..+.++|.++=|-|+|-..+ ....+.++..+++++.....+..... .+.++|+++.++-
T Consensus 18 ~~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~----------~~~~~DlIist~~ 78 (113)
T 1tvm_A 18 QGSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET----------YMDGVHLICTTAR 78 (113)
T ss_dssp SCSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT----------STTSCSEEEESSC
T ss_pred cccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh----------ccCCCCEEEECCc
Confidence 34568999999999998764 66667888888887766655543211 1246899887763
No 77
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=30.65 E-value=2.3e+02 Score=25.24 Aligned_cols=74 Identities=15% Similarity=0.041 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhC--CCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeee-----HH---HHHHHHHhCCCCccE
Q psy559 182 LSKYAFEYAKKF--GRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMI-----ID---NTCMQLVSNPKQFDV 251 (376)
Q Consensus 182 iar~AFe~A~~r--~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~-----vD---~~~~~Lv~~P~~fdV 251 (376)
..+.|.++..++ |.+||.++.-..-.. +.....+-+++..++ +++++.... .+ ..+.++++....+|.
T Consensus 108 ~g~~a~~~L~~~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 185 (313)
T 2h3h_A 108 AGYTAGLIMKELLGGKGKVVIGTGSLTAM-NSLQRIQGFKDAIKD-SEIEIVDILNDEEDGARAVSLAEAALNAHPDLDA 185 (313)
T ss_dssp HHHHHHHHHHHHHTSCSEEEEEESCSSCH-HHHHHHHHHHHHHTT-SSCEEEEEEECSSCHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHHHHHcCCCCEEEEEECCCCCc-cHHHHHHHHHHHhcC-CCCEEEEeecCCCCHHHHHHHHHHHHHHCcCceE
Confidence 334444554444 678888876432111 223445556665555 676653221 12 334566665457899
Q ss_pred EecCCc
Q psy559 252 MVMPNL 257 (376)
Q Consensus 252 iV~~Nl 257 (376)
|++.|=
T Consensus 186 i~~~~d 191 (313)
T 2h3h_A 186 FFGVYA 191 (313)
T ss_dssp EEECST
T ss_pred EEEcCC
Confidence 999873
No 78
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=30.34 E-value=26 Score=34.01 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=17.2
Q ss_pred CeeeEEEEcCC--CCCHHHHHHH
Q psy559 42 GRNAVTMLPGG--GIGPELMSYV 62 (376)
Q Consensus 42 ~~~~I~vipGD--GIGpEV~~aa 62 (376)
++.+|++-.|| ||||||+-.+
T Consensus 7 ~~~~iaiT~GDpaGIGpEiilka 29 (334)
T 3lxy_A 7 HNNRLVITPGEPAGVGPDLAITL 29 (334)
T ss_dssp CCSEEEEECCCTTSSHHHHHHHH
T ss_pred CCCEEEEeCCCCccchHHHHHHh
Confidence 56789999998 7999987543
No 79
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=30.22 E-value=1.2e+02 Score=28.35 Aligned_cols=62 Identities=10% Similarity=0.147 Sum_probs=39.8
Q ss_pred CCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHH----HHHHHHHhCCCCccEEecC
Q psy559 194 GRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIID----NTCMQLVSNPKQFDVMVMP 255 (376)
Q Consensus 194 ~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD----~~~~~Lv~~P~~fdViV~~ 255 (376)
++..||+.+-..--......|.+++++..++||+|+++...+. .-....+..-..+||+...
T Consensus 6 ~~~tl~~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~kl~~~~~sg~~pDv~~~~ 71 (405)
T 3i3v_A 6 DPDTLVVHTQLGTTAPGSPTYLAAVDRFREENPGVKIKNLVNGDDLAQVYETSRLARKEADVVMVN 71 (405)
T ss_dssp -CCSEEEEESCSSSSTTHHHHHHHHHHHHHHSTTCCEEEEECSTTHHHHHHHHHHTTCCCSEEEEC
T ss_pred CCcEEEEEeecCCCchhhHHHHHHHHHHHHHCCCcEEEEEECcHHHHHHHHHHHHCCCCCcEEEec
Confidence 3556888763221111246889999999999999998887652 2223334455679998884
No 80
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=29.85 E-value=67 Score=30.30 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=42.5
Q ss_pred CCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeH--HHHHHHH---HhCCC-CccEEecCC
Q psy559 195 RKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMII--DNTCMQL---VSNPK-QFDVMVMPN 256 (376)
Q Consensus 195 rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~v--D~~~~~L---v~~P~-~fdViV~~N 256 (376)
.++||+-+-.+ ......|.+++++..++||+|+++...+ |....+| +.... .+||+.+.+
T Consensus 27 ~~~l~~w~~~~--~~~~~~~~~~~~~f~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~~pDv~~~~~ 92 (412)
T 3k01_A 27 SGTVTFWDTSN--EAEKATYQALAEGFEKEHPKVDVKYVNVPFGEANAKFKNAAGGNSGAPDVMRTEV 92 (412)
T ss_dssp CEEEEEEECCC--TTTHHHHHHHHHTHHHHCTTEEEEEEECCHHHHHHHHHHHHHTTSSCCSEEEEEH
T ss_pred CcEEEEecCCC--CcchHHHHHHHHHHHHHCcCeEEEEEecChHHHHHHHHHHHhcCCCCCCEEEecC
Confidence 45788887665 2235688999999999999999988875 3333343 33555 699988743
No 81
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=29.32 E-value=1.9e+02 Score=22.22 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHH-HhCCCCcEEEEecCC
Q psy559 177 ANSYRLSKYAFEYA-KKFGRKKVTTVHKAN 205 (376)
Q Consensus 177 ~~~eRiar~AFe~A-~~r~rk~Vt~v~KaN 205 (376)
+.+++.+++|.++| ++. ..+|+++|=..
T Consensus 12 ~~s~~al~~a~~la~~~~-~a~l~ll~v~~ 40 (138)
T 3idf_A 12 EACERAAQYILDMFGKDA-DCTLTLIHVKP 40 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-TEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccCC-CCEEEEEEEec
Confidence 56789999999999 665 46788877433
No 82
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=28.57 E-value=3e+02 Score=24.07 Aligned_cols=175 Identities=14% Similarity=0.059 Sum_probs=86.6
Q ss_pred CCeeeEEEEcCCCCCH---HHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCCCc
Q psy559 41 GGRNAVTMLPGGGIGP---ELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSLDS 115 (376)
Q Consensus 41 ~~~~~I~vipGDGIGp---EV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~~~ 115 (376)
++..+|+++--+--.| ++.....+.++..|..+.+ +..... .....+.++.+ ++.|+++..+.... .
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~---~~~~~~~~~~l~~~~vdgiIi~~~~~~---~ 77 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLL--ANTAED---IVREREAVGQFFERRVDGLILAPSEGE---H 77 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE--EECTTC---HHHHHHHHHHHHHTTCSEEEECCCSSC---C
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEE--EeCCCC---HHHHHHHHHHHHHCCCCEEEEeCCCCC---h
Confidence 4577899887665443 4555666666666655544 222110 00122344444 46888888776431 1
Q ss_pred hhhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCCC
Q psy559 116 LWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGR 195 (376)
Q Consensus 116 ~~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~r 195 (376)
...-.++ ..++.+|++-....+ ++. ..+..-. ....+.|.++..++|.
T Consensus 78 ~~~~~~~-----------------~~~iPvV~~~~~~~~----------~~~-~~V~~D~----~~~g~~a~~~L~~~G~ 125 (291)
T 3egc_A 78 DYLRTEL-----------------PKTFPIVAVNRELRI----------PGC-GAVLSEN----VRGARTAVEYLIARGH 125 (291)
T ss_dssp HHHHHSS-----------------CTTSCEEEESSCCCC----------TTC-EEEEECH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHhh-----------------ccCCCEEEEecccCC----------CCC-CEEEECc----HHHHHHHHHHHHHcCC
Confidence 1111122 235667776433321 000 1111112 3445556666666788
Q ss_pred CcEEEEecCCccccchHHHHHHHHHHHhhCC-Cee--------eeeeeHHHHHHHHHhCCCCccEEecCC
Q psy559 196 KKVTTVHKANIMKISDGLFLEISRKVAKEYP-EIE--------HNDMIIDNTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 196 k~Vt~v~KaNvl~~sdglf~~~~~eva~eyP-~I~--------~e~~~vD~~~~~Lv~~P~~fdViV~~N 256 (376)
++|.++.-..-.. +.....+-+++..+++. .+. ++..-.-.++.++++...++|.|++.|
T Consensus 126 ~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 194 (291)
T 3egc_A 126 TRIGAIVGSAGLM-TSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSS 194 (291)
T ss_dssp CSEEEECSCTTSH-HHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEESS
T ss_pred CEEEEEeCCCCCc-CHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEECC
Confidence 8998886433222 23344455555544441 111 111112245667777777899999987
No 83
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=27.64 E-value=2.7e+02 Score=24.16 Aligned_cols=74 Identities=14% Similarity=0.045 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhC-CCeee-----eeeeH---HHHHHHHHhCCCCccEE
Q psy559 182 LSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY-PEIEH-----NDMII---DNTCMQLVSNPKQFDVM 252 (376)
Q Consensus 182 iar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~ey-P~I~~-----e~~~v---D~~~~~Lv~~P~~fdVi 252 (376)
..+.+.++..++|.++|.++.-..-...+ ....+-+++..+++ .++.. ...-. -..+.+++..+.++|.|
T Consensus 113 ~~~~~~~~L~~~G~~~i~~i~~~~~~~~~-~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 191 (289)
T 1dbq_A 113 GGYMAGRYLIERGHREIGVIPGPLERNTG-AGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAV 191 (289)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCC-------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEE
T ss_pred HHHHHHHHHHHCCCCeEEEEecCCccccH-HHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEE
Confidence 34455555556688888887422111111 12333344443333 12211 01111 23456777777789999
Q ss_pred ecCC
Q psy559 253 VMPN 256 (376)
Q Consensus 253 V~~N 256 (376)
++.|
T Consensus 192 ~~~~ 195 (289)
T 1dbq_A 192 FCGG 195 (289)
T ss_dssp EESC
T ss_pred EECC
Confidence 9987
No 84
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=26.79 E-value=2.5e+02 Score=24.77 Aligned_cols=171 Identities=12% Similarity=0.068 Sum_probs=85.8
Q ss_pred CCeeeEEEEcCCCCCH---HHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCCCc
Q psy559 41 GGRNAVTMLPGGGIGP---ELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSLDS 115 (376)
Q Consensus 41 ~~~~~I~vipGDGIGp---EV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~~~ 115 (376)
++..+|+++- +--.| ++.....+.++..|..+.+.... .. .. ..+.++.+ ++.|+++..+...+.
T Consensus 10 ~~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~---~~-~~~~~~~l~~~~vdgiIi~~~~~~~--- 79 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVA--PS---RA-EKVAVQALMRERCEAAILLGTRFDT--- 79 (289)
T ss_dssp ---CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEB--TT---BC-HHHHHHHHTTTTEEEEEEETCCCCH---
T ss_pred CCCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEeCC--CC---HH-HHHHHHHHHhCCCCEEEEECCCCCH---
Confidence 4567899888 65443 45555555555567555553322 11 11 33455555 457888877653321
Q ss_pred hhhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCCC
Q psy559 116 LWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGR 195 (376)
Q Consensus 116 ~~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~r 195 (376)
...-.++ +++.+|++-...++. +. -.+..-. ....+.|.++-.++|.
T Consensus 80 ~~~~~~~------------------~~iPvV~i~~~~~~~----------~~-~~V~~D~----~~~~~~a~~~L~~~G~ 126 (289)
T 3k9c_A 80 DELGALA------------------DRVPALVVARASGLP----------GV-GAVRGDD----VAGITLAVDHLTELGH 126 (289)
T ss_dssp HHHHHHH------------------TTSCEEEESSCCSST----------TS-EEEEECH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHH------------------cCCCEEEEcCCCCCC----------CC-CEEEeCh----HHHHHHHHHHHHHCCC
Confidence 1111222 256666664322210 00 0111111 2345556666666788
Q ss_pred CcEEEEecCCccccchHHHHHHHHHHHhhCC-C----eeeeeeeHH---HHHHHHHhCCCCccEEecCC
Q psy559 196 KKVTTVHKANIMKISDGLFLEISRKVAKEYP-E----IEHNDMIID---NTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 196 k~Vt~v~KaNvl~~sdglf~~~~~eva~eyP-~----I~~e~~~vD---~~~~~Lv~~P~~fdViV~~N 256 (376)
+++-++.-..-. +.....+-+++..+++. . +.......+ .++.++++...++|.|+|.|
T Consensus 127 ~~I~~i~~~~~~--~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 193 (289)
T 3k9c_A 127 RNIAHIDGADAP--GGADRRAGFLAAMDRHGLSASATVVTGGTTETEGAEGMHTLLEMPTPPTAVVAFN 193 (289)
T ss_dssp CSEEEECCTTST--THHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEEEESS
T ss_pred CcEEEEeCCCCc--cHHHHHHHHHHHHHHCCCCCCccEEECCCCHHHHHHHHHHHHcCCCCCCEEEECC
Confidence 898888654322 33444555555544432 1 111111122 34567777777899999987
No 85
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=26.13 E-value=2.5e+02 Score=24.71 Aligned_cols=179 Identities=12% Similarity=0.063 Sum_probs=86.8
Q ss_pred CeeeEEEEcCCCCCH---HHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCCCch
Q psy559 42 GRNAVTMLPGGGIGP---ELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSLDSL 116 (376)
Q Consensus 42 ~~~~I~vipGDGIGp---EV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~~~~ 116 (376)
+.++|+++.-+.-.| ++.....+.++..|..+.+.. . ...+.....+.++.+ ++.|+++..+...+.. ..
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~---~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~-~~ 77 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG-A---AQYDIQEQITVLEQAIAKNPAGIAISAIDPVEL-TD 77 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE-C---SSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTT-HH
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC-C---CcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHH-HH
Confidence 356788777664443 455555566666676555421 1 101000112334443 4588988877643211 11
Q ss_pred hhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhC--C
Q psy559 117 WTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKF--G 194 (376)
Q Consensus 117 ~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r--~ 194 (376)
..-.++ ..++.+|++-...++. . ....+..-. ....+.|.++..++ |
T Consensus 78 ~~~~~~-----------------~~~iPvV~~~~~~~~~----~------~~~~V~~d~----~~~g~~~~~~l~~~~~g 126 (305)
T 3g1w_A 78 TINKAV-----------------DAGIPIVLFDSGAPDS----H------AHSFLGTNN----YNAGMNAAYKMAELLDG 126 (305)
T ss_dssp HHHHHH-----------------HTTCCEEEESSCCTTS----C------CSCEEECCH----HHHHHHHHHHHHHHTTT
T ss_pred HHHHHH-----------------HCCCcEEEECCCCCCC----c------eeEEECcCH----HHHHHHHHHHHHHHhCC
Confidence 122222 1356666664322210 0 000111112 23445555555555 7
Q ss_pred CCcEEEEecCCccccchHHHHHHHHHH-HhhCCCeeeeeee-----HH---HHHHHHHhCCCCccEEecCCcc
Q psy559 195 RKKVTTVHKANIMKISDGLFLEISRKV-AKEYPEIEHNDMI-----ID---NTCMQLVSNPKQFDVMVMPNLY 258 (376)
Q Consensus 195 rk~Vt~v~KaNvl~~sdglf~~~~~ev-a~eyP~I~~e~~~-----vD---~~~~~Lv~~P~~fdViV~~Nlf 258 (376)
.+||.++.-... .+.....+-+++. .+.+|+++..... .+ .++.++++...++|.|++.|=.
T Consensus 127 ~~~i~~i~~~~~--~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 197 (305)
T 3g1w_A 127 EGEVAVITLPNQ--LNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEAN 197 (305)
T ss_dssp CEEEEEEECTTC--HHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHH
T ss_pred CcEEEEEeCCCc--ccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEECCCc
Confidence 788888874432 2333444555554 3456776654321 12 2345566655579999998743
No 86
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=25.52 E-value=2.2e+02 Score=24.96 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=43.6
Q ss_pred CCCeeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHH-----hcCeEEEccccc
Q psy559 40 YGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIR-----RNGVAIKGNIET 110 (376)
Q Consensus 40 ~~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~-----~~dail~G~i~~ 110 (376)
|.-+.+|++|-|---=-++++.+.++|+.+|+++|..-. |. ++ .|++..+-++ .+++++-++-..
T Consensus 9 ~~m~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~--Sa---HR-~p~~~~~~~~~a~~~g~~ViIa~AG~a 78 (174)
T 3kuu_A 9 YAAGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVV--SA---HR-TPDRLFSFAEQAEANGLHVIIAGNGGA 78 (174)
T ss_dssp SCCCCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEEC--CT---TT-CHHHHHHHHHHTTTTTCSEEEEEEESS
T ss_pred ccCCCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEE--cc---cC-CHHHHHHHHHHHHhCCCcEEEEECChh
Confidence 444457999999877789999999999999988654322 11 11 2555544443 367888777543
No 87
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=25.38 E-value=1.8e+02 Score=25.47 Aligned_cols=75 Identities=13% Similarity=-0.028 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhC-C-CCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeee----eHH---HHHHHHHhCCCCccE
Q psy559 181 RLSKYAFEYAKKF-G-RKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDM----IID---NTCMQLVSNPKQFDV 251 (376)
Q Consensus 181 Riar~AFe~A~~r-~-rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~----~vD---~~~~~Lv~~P~~fdV 251 (376)
...+.|.++..++ | .+||-++.-..-.. +.....+-+++..++++....+.. -.+ .++.++++....+|.
T Consensus 115 ~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 193 (289)
T 3brs_A 115 QAGIRIGAVTKNLVRKSGKIGVISFVKNSK-TAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPDISV 193 (289)
T ss_dssp HHHHHHHHHHHHHTSSSCEEEEEESCTTSH-HHHHHHHHHHHHHGGGGGGEEEEEECTTCHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHHHHHcCCCceEEEEECCCCCc-cHHHHHHHHHHHHHhCCCcEEeeecCCCCHHHHHHHHHHHHHhCCCceE
Confidence 3444555555554 5 78888875321111 223445556666566654311111 122 234566665557999
Q ss_pred EecCC
Q psy559 252 MVMPN 256 (376)
Q Consensus 252 iV~~N 256 (376)
|++.|
T Consensus 194 i~~~~ 198 (289)
T 3brs_A 194 MVGLN 198 (289)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99987
No 88
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=24.41 E-value=2.1e+02 Score=25.33 Aligned_cols=174 Identities=10% Similarity=0.055 Sum_probs=86.7
Q ss_pred CCeeeEEEEcC----CC---CCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHH--hcCeEEEcccccC
Q psy559 41 GGRNAVTMLPG----GG---IGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIR--RNGVAIKGNIETG 111 (376)
Q Consensus 41 ~~~~~I~vipG----DG---IGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~--~~dail~G~i~~p 111 (376)
++..+|+++-- +- .-.++.....+.++..|..+.+.... . .....+.++.+. +.|.++..+...+
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~----~~~~~~~~~~l~~~~vdGiIi~~~~~~ 77 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDE--P----GEKYQSLIHLVETRRVDALIVAHTQPE 77 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEEC--T----TCCCHHHHHHHHHTCCSEEEECSCCSS
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCC--C----hhhHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 45677887654 22 22456666666666667666654332 1 112334445553 5899888776432
Q ss_pred CCCchhhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHH
Q psy559 112 SLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAK 191 (376)
Q Consensus 112 ~~~~~~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~ 191 (376)
. ...-.++ ..++.+|++-...++ +. .-.+..-. ....+.|.++-.
T Consensus 78 ~---~~~~~l~-----------------~~~iPvV~~~~~~~~----------~~-~~~V~~D~----~~~~~~a~~~L~ 122 (294)
T 3qk7_A 78 D---FRLQYLQ-----------------KQNFPFLALGRSHLP----------KP-YAWFDFDN----HAGASLAVKRLL 122 (294)
T ss_dssp C---HHHHHHH-----------------HTTCCEEEESCCCCS----------SC-CEEEEECH----HHHHHHHHHHHH
T ss_pred h---HHHHHHH-----------------hCCCCEEEECCCCCC----------CC-CCEEEcCh----HHHHHHHHHHHH
Confidence 1 2222233 125666666332111 00 00111111 244555666666
Q ss_pred hCCCCcEEEEecCCccccchHHHHHHHHHHHhhCC-C-----eeeeeeeHH---HHHHHHHhCCCCccEEecCC
Q psy559 192 KFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYP-E-----IEHNDMIID---NTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 192 ~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP-~-----I~~e~~~vD---~~~~~Lv~~P~~fdViV~~N 256 (376)
++|.+|+-++.-..-.. +.....+-+++..+++. . +.......+ .++.++++.+.++|.|+|.|
T Consensus 123 ~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~n 195 (294)
T 3qk7_A 123 ELGHQRIAFVSTDARIS-YVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIITDC 195 (294)
T ss_dssp HTTCCCEEEEEESSCCH-HHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEESS
T ss_pred HCCCceEEEEeCCcccc-hHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEECC
Confidence 67888888775432221 12233444444443331 1 111222222 35567777777899999987
No 89
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=24.39 E-value=39 Score=33.28 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=16.4
Q ss_pred eeeEEEEcCC--CCCHHHHHHH
Q psy559 43 RNAVTMLPGG--GIGPELMSYV 62 (376)
Q Consensus 43 ~~~I~vipGD--GIGpEV~~aa 62 (376)
+.+|++-.|| ||||||+-.+
T Consensus 4 ~~~iaIT~GDpaGIGpEI~~ka 25 (367)
T 3tsn_A 4 MKKLAISIGDINSIGLEILVRS 25 (367)
T ss_dssp CCEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEeCCCCccchHHHHHHh
Confidence 4579999999 8999997654
No 90
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=24.29 E-value=3.5e+02 Score=23.43 Aligned_cols=175 Identities=11% Similarity=-0.019 Sum_probs=80.4
Q ss_pred CCeeeEEEEcCC-----CCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCC
Q psy559 41 GGRNAVTMLPGG-----GIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSL 113 (376)
Q Consensus 41 ~~~~~I~vipGD-----GIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~ 113 (376)
++..+|+++-.+ -...++.....+.++..|..+.+ ++... +.....+.++.+ ++.|+++..+...+
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~---~~~~~~~~~~~l~~~~vdgii~~~~~~~-- 89 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLL--ADGKH---SAEEERQAIQYLLDLRCDAIMIYPRFLS-- 89 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEE--ECCTT---SHHHHHHHHHHHHHTTCSEEEEECSSSC--
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEE--EeCCC---CHHHHHHHHHHHHhcCCCEEEEecCCCC--
Confidence 356789887543 24456777777777776755443 22111 000012234444 35788887664321
Q ss_pred CchhhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhC
Q psy559 114 DSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKF 193 (376)
Q Consensus 114 ~~~~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r 193 (376)
....-.++ + ..++.+|++-....+.+ .+ .+..- -....+.|.++..++
T Consensus 90 -~~~~~~l~-~---------------~~~iPvV~~~~~~~~~~-------~~----~V~~d----~~~~~~~a~~~l~~~ 137 (296)
T 3brq_A 90 -VDEIDDII-D---------------AHSQPIMVLNRRLRKNS-------SH----SVWCD----HKQTSFNAVAELINA 137 (296)
T ss_dssp -HHHHHHHH-H---------------TCSSCEEEESCCCSSSG-------GG----EECCC----HHHHHHHHHHHHHHT
T ss_pred -hHHHHHHH-h---------------cCCCCEEEEccccCCCC-------CC----EEEEc----hHHHHHHHHHHHHHC
Confidence 11122233 1 02456666632221110 00 11111 123445556666666
Q ss_pred CCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeee-------eeeHH---HHHHHHHhCCCCccEEecCC
Q psy559 194 GRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHN-------DMIID---NTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 194 ~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e-------~~~vD---~~~~~Lv~~P~~fdViV~~N 256 (376)
|.++|-++.-..-.. +.....+-+.+..+++ +++++ ....+ ..+.++++....+|.|++.|
T Consensus 138 G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 208 (296)
T 3brq_A 138 GHQEIAFLTGSMDSP-TSIERLAGYKDALAQH-GIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVASN 208 (296)
T ss_dssp TCCSEEEECCCTTCH-HHHHHHHHHHHHHHTT-TCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEESS
T ss_pred CCceEEEEcCCCCCc-cHHHHHHHHHHHHHHc-CCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEECC
Confidence 888888876332111 1123334444444443 22211 11122 34456777667799999987
No 91
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=23.71 E-value=3.9e+02 Score=23.74 Aligned_cols=182 Identities=13% Similarity=0.052 Sum_probs=86.4
Q ss_pred CeeeEEEEcCCCC---CHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCCCch
Q psy559 42 GRNAVTMLPGGGI---GPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSLDSL 116 (376)
Q Consensus 42 ~~~~I~vipGDGI---GpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~~~~ 116 (376)
++++|+++--+-- -.++.....+.++..|..+.+.. .. .+.....+.++.+ ++.|+++..|...+. ...
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~---~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~-~~~ 75 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY--AD---DDIPNQLSQIENMVTKGVKVLVIASIDGTT-LSD 75 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE--CT---TCHHHHHHHHHHHHHHTCSEEEECCSSGGG-GHH
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee--CC---CCHHHHHHHHHHHHHcCCCEEEEEcCCchh-HHH
Confidence 4678887765533 34566666666666676555532 11 0000011233333 468999987764211 011
Q ss_pred hhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHh---C
Q psy559 117 WTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKK---F 193 (376)
Q Consensus 117 ~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~---r 193 (376)
..-.++ ..++.+|++-....+. +.....+..-...+.+..+++..+.... +
T Consensus 76 ~~~~~~-----------------~~giPvV~~~~~~~~~---------~~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~ 129 (330)
T 3uug_A 76 VLKQAG-----------------EQGIKVIAYDRLIRNS---------GDVSYYATFDNFQVGVLQATSITDKLGLKDGK 129 (330)
T ss_dssp HHHHHH-----------------HTTCEEEEESSCCCSC---------TTCCEEEEECHHHHHHHHHHHHHHHHTGGGTC
T ss_pred HHHHHH-----------------HCCCCEEEECCCCCCC---------CceeEEEEeCHHHHHHHHHHHHHHHhcccCCC
Confidence 112222 1356666663322210 0010112222345555666666555443 4
Q ss_pred CCCcEEEEecCCccccchHHHHHHHHHHHhhC---CCeeeeee---------------eHHHHHHHHHh---CCCCccEE
Q psy559 194 GRKKVTTVHKANIMKISDGLFLEISRKVAKEY---PEIEHNDM---------------IIDNTCMQLVS---NPKQFDVM 252 (376)
Q Consensus 194 ~rk~Vt~v~KaNvl~~sdglf~~~~~eva~ey---P~I~~e~~---------------~vD~~~~~Lv~---~P~~fdVi 252 (376)
|.++|-++.-..-.. +.....+-+++..+++ +++++... -.-.++.++++ .+.++|.|
T Consensus 130 G~~~i~~i~g~~~~~-~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai 208 (330)
T 3uug_A 130 GPFNIELFGGSPDDN-NAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAV 208 (330)
T ss_dssp CCEEEEECBCCTTCH-HHHHHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEE
T ss_pred CceEEEEEECCCCCc-hHHHHHHHHHHHHHhccccCceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 667888774221111 2223334444444444 34554311 12233556666 35689999
Q ss_pred ecCC
Q psy559 253 VMPN 256 (376)
Q Consensus 253 V~~N 256 (376)
+|.|
T Consensus 209 ~~~n 212 (330)
T 3uug_A 209 LSPY 212 (330)
T ss_dssp ECSS
T ss_pred EECC
Confidence 9988
No 92
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=23.54 E-value=3.3e+02 Score=23.65 Aligned_cols=174 Identities=10% Similarity=0.023 Sum_probs=84.2
Q ss_pred CCeeeEEEEcC-CC---CCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCCC
Q psy559 41 GGRNAVTMLPG-GG---IGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSLD 114 (376)
Q Consensus 41 ~~~~~I~vipG-DG---IGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~~ 114 (376)
++.++|+++-. +- --.++.....+.++..|..+.+......... ..+.++.+ ++.|+++..+...+
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-----~~~~~~~l~~~~vdgiIi~~~~~~--- 80 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDC-----LHLEKGISKENSFDAAIIANISNY--- 80 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTC-----GGGCGGGSTTTCCSEEEESSCCHH---
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchh-----HHHHHHHHhccCCCEEEEecCCcc---
Confidence 45678887744 32 2245666666777777877766543322211 11112222 36888888765221
Q ss_pred chhhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCC
Q psy559 115 SLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFG 194 (376)
Q Consensus 115 ~~~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~ 194 (376)
......+. ..++.+|++-...++. -.+..-. ....+.|.++-.++|
T Consensus 81 ~~~~~~~~-----------------~~~iPvV~~~~~~~~~-------------~~V~~D~----~~~~~~a~~~L~~~G 126 (289)
T 3g85_A 81 DLEYLNKA-----------------SLTLPIILFNRLSNKY-------------SSVNVDN----YKMGEKASLLFAKKR 126 (289)
T ss_dssp HHHHHHHC-----------------CCSSCEEEESCCCSSS-------------EEEEECH----HHHHHHHHHHHHHTT
T ss_pred cHHHHHhc-----------------cCCCCEEEECCCCCCC-------------CEEEeCH----HHHHHHHHHHHHHcC
Confidence 01111111 1356666664322110 0111111 234555666666678
Q ss_pred CCcEEEEecCCccccchHHHHHHHHHHHhhCC-C-----eeeeeeeH---HHHHHHHHhCCCCccEEecCCc
Q psy559 195 RKKVTTVHKANIMKISDGLFLEISRKVAKEYP-E-----IEHNDMII---DNTCMQLVSNPKQFDVMVMPNL 257 (376)
Q Consensus 195 rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP-~-----I~~e~~~v---D~~~~~Lv~~P~~fdViV~~Nl 257 (376)
.+++-++.-..-.. +.....+-+++..+++. . +....... -.++.++++....+|.|++.|-
T Consensus 127 ~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 197 (289)
T 3g85_A 127 YKSAAAILTESLND-AMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCNSD 197 (289)
T ss_dssp CCBCEEEECCCSSH-HHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEESSH
T ss_pred CCEEEEEeCCcccc-cHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Confidence 88887776432111 12233344545444431 1 11111122 2355677777778999999873
No 93
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=23.37 E-value=2.5e+02 Score=23.41 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=46.6
Q ss_pred EEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEe-cCCccccchHHHHHHHHHHHhhCCCee
Q psy559 168 VESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVH-KANIMKISDGLFLEISRKVAKEYPEIE 229 (376)
Q Consensus 168 a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~-KaNvl~~sdglf~~~~~eva~eyP~I~ 229 (376)
-+|+.=.|.+++.+.+...++.|..+|.+.|.++| |.+--+...+.-++.+.++-++.|.|.
T Consensus 49 ~LDLHG~~~~EA~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~ 111 (137)
T 3qd7_X 49 SLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQ 111 (137)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCcee
Confidence 46777788999999999999999998888999998 333211112367777888777788775
No 94
>3bvr_A NOTI restriction endonuclease; protein-DNA complex; HET: DNA; 2.50A {Nocardia otitidiscaviarum} PDB: 3bvq_A* 3c25_A*
Probab=22.85 E-value=21 Score=34.40 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=26.2
Q ss_pred hCCCCccEEecCCcc--hhhHhhhhhhhcC-Cccc
Q psy559 244 SNPKQFDVMVMPNLY--GAITSNVICGLIG-GAGL 275 (376)
Q Consensus 244 ~~P~~fdViV~~Nlf--GDILSDlaa~l~G-glGl 275 (376)
++++.||||+|||-+ +.||+|.+.-..| ++.+
T Consensus 71 ~d~ePydvIiCPiRL~dy~il~~~s~~~Fg~~~~l 105 (383)
T 3bvr_A 71 VDNERYDWLVCPNRALDPLFMSAASRKLFGYGPTE 105 (383)
T ss_dssp ETTEEEEEECCGGGGCCHHHHHHHHHHHHTCCTTC
T ss_pred CCCCCceEEEcccccccHHHHHHHHHHhcCCCcch
Confidence 477889999999987 6689999988887 4444
No 95
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=22.82 E-value=2.6e+02 Score=24.48 Aligned_cols=172 Identities=10% Similarity=0.015 Sum_probs=82.3
Q ss_pred CeeeEEEEcCC-------CCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCC
Q psy559 42 GRNAVTMLPGG-------GIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGS 112 (376)
Q Consensus 42 ~~~~I~vipGD-------GIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~ 112 (376)
+..+|+++--+ .--.++.....+.++..|..+.+ +... .+.....+.++.+ ++.|+++..+...+.
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 77 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLP--FPFS---EDRSQIDIYRDLIRSGNVDGFVLSSINYND 77 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEE--CCCC---SSTTCCHHHHHHHHTTCCSEEEECSCCTTC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEE--EeCC---CchHHHHHHHHHHHcCCCCEEEEeecCCCc
Confidence 45678877543 23357777777777777755543 1111 1111223445554 358888887653221
Q ss_pred CCchhhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHh
Q psy559 113 LDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKK 192 (376)
Q Consensus 113 ~~~~~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~ 192 (376)
...-.++ + .++.+|++-...++. . ...+..-... ..+.|.++-.+
T Consensus 78 ---~~~~~l~-~----------------~~iPvV~~~~~~~~~----------~-~~~V~~D~~~----~g~~a~~~L~~ 122 (287)
T 3bbl_A 78 ---PRVQFLL-K----------------QKFPFVAFGRSNPDW----------D-FAWVDIDGTA----GTRQAVEYLIG 122 (287)
T ss_dssp ---HHHHHHH-H----------------TTCCEEEESCCSTTC----------C-CCEEEECHHH----HHHHHHHHHHH
T ss_pred ---HHHHHHH-h----------------cCCCEEEECCcCCCC----------C-CCEEEeccHH----HHHHHHHHHHH
Confidence 1122233 1 245666663222110 0 0011122233 34444555444
Q ss_pred CCCCcEEEEecC-CccccchHHHHHHHHHHHhhCCCeeee-------eeeHH---HHHHHHHh-CCC-CccEEecCC
Q psy559 193 FGRKKVTTVHKA-NIMKISDGLFLEISRKVAKEYPEIEHN-------DMIID---NTCMQLVS-NPK-QFDVMVMPN 256 (376)
Q Consensus 193 r~rk~Vt~v~Ka-Nvl~~sdglf~~~~~eva~eyP~I~~e-------~~~vD---~~~~~Lv~-~P~-~fdViV~~N 256 (376)
+|.+||-++.-. +.. +.....+-+++..+++ +++++ ....+ .++.++++ .+. .+|.|+|.|
T Consensus 123 ~G~~~I~~i~~~~~~~--~~~~R~~Gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~ 196 (287)
T 3bbl_A 123 RGHRRIAILAWPEDSR--VGNDRLQGYLEAMQTA-QLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMTLN 196 (287)
T ss_dssp HTCCCEEEEECCTTCH--HHHHHHHHHHHHHHHT-TCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEESS
T ss_pred CCCCeEEEEeCCcccc--cHHHHHHHHHHHHHHc-CCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEECC
Confidence 577888877532 221 1223334444444444 12211 11222 34556776 555 799999987
No 96
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=22.72 E-value=80 Score=29.41 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHh---CCCCccEEecC
Q psy559 212 GLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVS---NPKQFDVMVMP 255 (376)
Q Consensus 212 glf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~---~P~~fdViV~~ 255 (376)
..|.+++++..+++|+|+++...++..-.+|.+ .-..+||+...
T Consensus 20 ~~~~~~i~~F~~~~p~i~V~~~~~~~~~~kl~~~~~~g~~PDv~~~~ 66 (381)
T 1elj_A 20 EVFQSLAEEYMALCPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWA 66 (381)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEECTTHHHHHHHHTTTTCSCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECCcHHHHHHHHHhcCCCCcEEEeC
Confidence 467788888888899999988877654445543 44568987654
No 97
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=22.69 E-value=3.1e+02 Score=24.78 Aligned_cols=175 Identities=10% Similarity=0.003 Sum_probs=85.6
Q ss_pred CeeeEEEEcCC--CCC---HHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCCC
Q psy559 42 GRNAVTMLPGG--GIG---PELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSLD 114 (376)
Q Consensus 42 ~~~~I~vipGD--GIG---pEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~~ 114 (376)
+..+|+++-.+ --. .++.....+.++..|..+.+. .... +.....+.++.+ ++.|.++..+...+
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~---~~~~~~~~~~~l~~~~vdgiIi~~~~~~--- 131 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLA--DGKH---SAEEERQAIQYLLDLRCDAIMIYPRFLS--- 131 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEE--ECTT---SHHHHHHHHHHHHHTTCSEEEECCSSSC---
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEE--eCCC---ChHHHHHHHHHHHhCCCCEEEEeCCCCC---
Confidence 56789988665 222 456666666666667655543 2111 000012234444 35888888665322
Q ss_pred chhhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCC
Q psy559 115 SLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFG 194 (376)
Q Consensus 115 ~~~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~ 194 (376)
......+. +. .++.+|++-....+. . .+ .+..- -+...+.|.++-.++|
T Consensus 132 ~~~~~~~~-~~---------------~~iPvV~~~~~~~~~----~---~~----~V~~D----~~~~~~~a~~~L~~~G 180 (338)
T 3dbi_A 132 VDEIDDII-DA---------------HSQPIMVLNRRLRKN----S---SH----SVWCD----HKQTSFNAVAELINAG 180 (338)
T ss_dssp HHHHHHHH-HH---------------CSSCEEEESSCCSSS----G---GG----EECBC----HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHH-Hc---------------CCCCEEEEcCCCCCC----C---CC----EEEEC----hHHHHHHHHHHHHHCC
Confidence 11122222 11 245566653222210 0 00 01111 1234555666666778
Q ss_pred CCcEEEEecCCccccchHHHHHHHHHHHhhCC-Cee-----eeeeeHH---HHHHHHHhCCCCccEEecCC
Q psy559 195 RKKVTTVHKANIMKISDGLFLEISRKVAKEYP-EIE-----HNDMIID---NTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 195 rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP-~I~-----~e~~~vD---~~~~~Lv~~P~~fdViV~~N 256 (376)
.+++-++.-..-.. +.....+-+++..+++. .+. ......+ .++.+|+....++|.|+|.|
T Consensus 181 ~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~n 250 (338)
T 3dbi_A 181 HQEIAFLTGSMDSP-TSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVASN 250 (338)
T ss_dssp CCSEEEECCCTTCH-HHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEESS
T ss_pred CCEEEEEeCCCCCc-cHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 88998885432221 22344444555544441 111 1111122 45567777777899999988
No 98
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=22.36 E-value=1.2e+02 Score=29.30 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=39.1
Q ss_pred CCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHH--HHHHHH---HhCCCCccEEecCC
Q psy559 195 RKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIID--NTCMQL---VSNPKQFDVMVMPN 256 (376)
Q Consensus 195 rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD--~~~~~L---v~~P~~fdViV~~N 256 (376)
...||+-+-.+ ....+.+++++..++||+|+++...++ ....+| +..-..+||+...+
T Consensus 29 ~~tlt~w~~~~----~~~~~~~~~~~F~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 91 (458)
T 3uor_A 29 KTTVRFWAMGK----EAEVVAELVADFEKQNPTIHVDVQNIPMTAAHEKLLTAFAADGLPDVCQLGN 91 (458)
T ss_dssp CEEEEEEECTH----HHHHHHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHHHHHTTCCCSEEEEET
T ss_pred CeEEEEEecCC----cHHHHHHHHHHHHHHCCCcEEEEEEcChHHHHHHHHHHHhCCCCCCEEEECc
Confidence 45677765321 235788899999999999999887753 333333 23445799988765
No 99
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=22.01 E-value=2.8e+02 Score=24.02 Aligned_cols=73 Identities=10% Similarity=0.025 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhC-CCeee----eeee---HHHHHHHHHhCCCCccEE
Q psy559 181 RLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY-PEIEH----NDMI---IDNTCMQLVSNPKQFDVM 252 (376)
Q Consensus 181 Riar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~ey-P~I~~----e~~~---vD~~~~~Lv~~P~~fdVi 252 (376)
...+.|.++..++|.+++.++.-..-. .....+-+++..+++ ..+.. .... .-.++.++++....+|.|
T Consensus 104 ~~g~~a~~~L~~~G~~~i~~i~~~~~~---~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 180 (280)
T 3gyb_A 104 RGAEIATKHLIDLGHTHIAHLRVGSGA---GLRRFESFEATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAI 180 (280)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCSSHH---HHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCCch---HHHHHHHHHHHHHHcCcCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEE
Confidence 445566666666788888888654322 223344444444443 22221 1111 223455667666789999
Q ss_pred ecCC
Q psy559 253 VMPN 256 (376)
Q Consensus 253 V~~N 256 (376)
++.|
T Consensus 181 ~~~~ 184 (280)
T 3gyb_A 181 FSSN 184 (280)
T ss_dssp EESS
T ss_pred EECC
Confidence 9987
No 100
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=21.82 E-value=3.9e+02 Score=23.12 Aligned_cols=100 Identities=15% Similarity=0.121 Sum_probs=55.9
Q ss_pred HcCCCeeEEEEEccccCCCCCChHHHHHHHHhcCeEEEcccccC-CCC----chh-hHHHhhhhcccEeecccccccCCC
Q psy559 68 YAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNIETG-SLD----SLW-TLKLCRLILRVIAMMILSVRCRQQ 141 (376)
Q Consensus 68 a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~~dail~G~i~~p-~~~----~~~-~~~LR~~~ldLyan~~pg~~~~~~ 141 (376)
..++++++... .|. ..+..++.-.++|.++.|.-+.. ... .+. .-.+| .-
T Consensus 85 ~~g~~~~~~~~-~g~------~~~~I~~~~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~-----------------~a 140 (268)
T 3ab8_A 85 AAGVAVEAVLE-EGV------PHEAILRRARAADLLVLGRSGEAHGDGFGGLGSTADRVLR-----------------AS 140 (268)
T ss_dssp HTTCCEEEEEE-EEC------HHHHHHHHHTTCSEEEEESSCTTSCTTCCSCCHHHHHHHH-----------------HC
T ss_pred hCCCCeEEEEe-cCC------HHHHHHhhccCCCEEEEeccCCCccccccccchhHHHHHH-----------------hC
Confidence 34677776432 221 12233444457999999987643 211 111 11223 13
Q ss_pred CccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCCCCcEEEEec
Q psy559 142 GIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHK 203 (376)
Q Consensus 142 ~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~K 203 (376)
+.++++||+... .| ..+.+.+. -...+++.+++|+++|+..+ .+|+++|=
T Consensus 141 ~~PVlvv~~~~~-~~--------~~ilv~~d--~s~~~~~al~~a~~la~~~~-a~l~ll~v 190 (268)
T 3ab8_A 141 PVPVLLAPGEPV-EL--------EGALLGYD--ASESAVRALHALAPLARALG-LGVRVVSV 190 (268)
T ss_dssp SSCEEEECSSCC-CC--------CEEEEECC--SCHHHHHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred CCCEEEECCCCC-CC--------CEEEEEEC--CCHHHHHHHHHHHHhhhcCC-CEEEEEEE
Confidence 588999997543 11 11222222 13457889999999998864 45888873
No 101
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=21.30 E-value=1.8e+02 Score=26.18 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhCCCeeeeeee--HHHHHHHHHhCCCCccEEecCCcc
Q psy559 212 GLFLEISRKVAKEYPEIEHNDMI--IDNTCMQLVSNPKQFDVMVMPNLY 258 (376)
Q Consensus 212 glf~~~~~eva~eyP~I~~e~~~--vD~~~~~Lv~~P~~fdViV~~Nlf 258 (376)
..+.++.++..++||+|+++..+ -..+..++...-..+||++..+..
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~~ 65 (296)
T 3cfx_A 17 VPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADYA 65 (296)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEECCHHHHHHHHHTSCCCCSEEEESSTT
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCchHHHHHHHHhCCCCCcEEEECChh
Confidence 46778888888889999887765 345666776523469999887643
No 102
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=21.29 E-value=2.1e+02 Score=25.24 Aligned_cols=74 Identities=15% Similarity=0.065 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCC-ccccchHHHHHHHHHHHhhCCCeeee-------eeeHH---HHHHHHHhCCCCcc
Q psy559 182 LSKYAFEYAKKFGRKKVTTVHKAN-IMKISDGLFLEISRKVAKEYPEIEHN-------DMIID---NTCMQLVSNPKQFD 250 (376)
Q Consensus 182 iar~AFe~A~~r~rk~Vt~v~KaN-vl~~sdglf~~~~~eva~eyP~I~~e-------~~~vD---~~~~~Lv~~P~~fd 250 (376)
..+.|.++-.++|.++|-++.-.. -.. +.....+-+++..+++ +++++ ..-.+ .++.++++.+..+|
T Consensus 120 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~-~~~~R~~Gf~~al~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 197 (289)
T 2fep_A 120 AIYDAVKLLVDKGHTDIAFVSGPMAEPI-NRSKKLQGYKRALEEA-NLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPT 197 (289)
T ss_dssp HHHHHHHHHHHTTCSSEEEEESCTTSHH-HHTTHHHHHHHHHHHT-TCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCS
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCccccc-cHHHHHHHHHHHHHHc-CCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCC
Confidence 445555555566888888775332 111 1112223333333333 12111 11222 34556777777899
Q ss_pred EEecCCc
Q psy559 251 VMVMPNL 257 (376)
Q Consensus 251 ViV~~Nl 257 (376)
.|++.|=
T Consensus 198 ai~~~~d 204 (289)
T 2fep_A 198 AILSATD 204 (289)
T ss_dssp EEEESSH
T ss_pred EEEECCH
Confidence 9999763
No 103
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=21.23 E-value=2.3e+02 Score=25.04 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=42.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHHh-----cCeEEEccccc
Q psy559 44 NAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRR-----NGVAIKGNIET 110 (376)
Q Consensus 44 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~-----~dail~G~i~~ 110 (376)
-.|++|-|---=-++|+.+.++|+.+++++|..- ++.. + .|++..+-+++ .++++-|+-+.
T Consensus 23 p~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~~V--~SAH---R-tp~~l~~~~~~a~~~g~~ViIa~AG~a 88 (181)
T 4b4k_A 23 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKV--VSAH---R-TPDYMFEYAETARERGLKVIIAGAGGA 88 (181)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEE--CCTT---T-SHHHHHHHHHHTTTTTCCEEEEEECSS
T ss_pred ccEEEEECCHhHHHHHHHHHHHHHHcCCCeeEEE--Eccc---c-ChHHHHHHHHHHHhcCceEEEEecccc
Confidence 3499999988778899999999999997765532 2222 1 25555555443 46888887553
No 104
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=21.07 E-value=4.2e+02 Score=23.21 Aligned_cols=180 Identities=8% Similarity=-0.032 Sum_probs=85.2
Q ss_pred CeeeEEEEcCCCC---CHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCC-ChHHHHHHH--HhcCeEEEcccccCCCCc
Q psy559 42 GRNAVTMLPGGGI---GPELMSYVKEVFRYAGVPVDFETVQIDPKSDSND-DLEYAITSI--RRNGVAIKGNIETGSLDS 115 (376)
Q Consensus 42 ~~~~I~vipGDGI---GpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~-~~~~~~~~~--~~~dail~G~i~~p~~~~ 115 (376)
.+++|+++.-+-- -.++.....+.++..|..+.+.. . ..+... ...+.++.+ ++.|+++..|...+.. .
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~--~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~-~ 76 (297)
T 3rot_A 2 VRDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILA--P--PGANDVPKQVQFIESALATYPSGIATTIPSDTAF-S 76 (297)
T ss_dssp -CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEEC--C--SSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTT-H
T ss_pred ceEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEEC--C--CCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH-H
Confidence 3678998876642 33455555566666675555422 1 111010 112344444 3588998877643211 1
Q ss_pred hhhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCC-
Q psy559 116 LWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFG- 194 (376)
Q Consensus 116 ~~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~- 194 (376)
...-.++ ..++.+|.+-...++. +. ......+..-. ....+.|.++..+++
T Consensus 77 ~~~~~~~-----------------~~giPvV~~~~~~~~~----~~---~~~~~~V~~D~----~~~g~~a~~~l~~~g~ 128 (297)
T 3rot_A 77 KSLQRAN-----------------KLNIPVIAVDTRPKDK----TK---NPYLVFLGSDN----LLAGKKLGEKALELTP 128 (297)
T ss_dssp HHHHHHH-----------------HHTCCEEEESCCCSCT----TT---SCCSCEEECCH----HHHHHHHHHHHHHHCT
T ss_pred HHHHHHH-----------------HCCCCEEEEcCCCccc----cc---cCcceEEccCh----HHHHHHHHHHHHHhcC
Confidence 1122233 1256666663322220 00 00001111112 234455555555556
Q ss_pred -CCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeee-------HHHHHHHHHhCCCCccEEecCC
Q psy559 195 -RKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMI-------IDNTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 195 -rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~-------vD~~~~~Lv~~P~~fdViV~~N 256 (376)
.+++.++.-..-.. +.....+-+++..+++ ++++.... .-.++..+++...++|.|++.|
T Consensus 129 ~~~~i~~i~g~~~~~-~~~~R~~Gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 196 (297)
T 3rot_A 129 SAKRALVLNPQPGHI-GLEKRAYGIKTILQDK-GIFFEELDVGTDPNQVQSRVKSYFKIHPETNIIFCLT 196 (297)
T ss_dssp TCCEEEEEESCTTCH-HHHHHHHHHHHHHHHT-TCEEEEEECCSCHHHHHHHHHHHHHHCTTCCEEEESS
T ss_pred CCceEEEEeCCCCcH-HHHHHHHHHHHHHHhc-CCeEEEeecCCChHHHHHHHHHHHHhCCCCCEEEEcC
Confidence 77888775332221 2234455566655555 55543322 1233445555555789999988
No 105
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=21.04 E-value=3.2e+02 Score=24.52 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEe
Q psy559 177 ANSYRLSKYAFEYAKKFGRKKVTTVH 202 (376)
Q Consensus 177 ~~~eRiar~AFe~A~~r~rk~Vt~v~ 202 (376)
+.+++.+++|.++|++.+ .+|+++|
T Consensus 30 ~~s~~al~~A~~lA~~~~-a~l~ll~ 54 (309)
T 3cis_A 30 PAAQVAVRWAARDAELRK-IPLTLVH 54 (309)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEE
Confidence 457889999999999874 5788876
No 106
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=20.81 E-value=2.5e+02 Score=24.69 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=41.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH-----HhcCeEEEccccc
Q psy559 43 RNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI-----RRNGVAIKGNIET 110 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~-----~~~dail~G~i~~ 110 (376)
+.+|++|-|---=-++++.+.++|+.+|+++|..- .+.++ .|++..+-+ +.+++++-++-..
T Consensus 7 ~~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V-----~SaHR-~p~~~~~~~~~a~~~g~~ViIa~AG~a 73 (174)
T 3lp6_A 7 RPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRV-----VSAHR-TPEAMFSYARGAAARGLEVIIAGAGGA 73 (174)
T ss_dssp CCSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEE-----CCTTT-CHHHHHHHHHHHHHHTCCEEEEEEESS
T ss_pred CCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEE-----ECCCC-CHHHHHHHHHHHHhCCCCEEEEecCch
Confidence 45799999987778999999999999998855432 22222 243333332 4578888877543
No 107
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=20.79 E-value=49 Score=32.05 Aligned_cols=17 Identities=41% Similarity=0.788 Sum_probs=14.7
Q ss_pred EEEEcCC--CCCHHHHHHH
Q psy559 46 VTMLPGG--GIGPELMSYV 62 (376)
Q Consensus 46 I~vipGD--GIGpEV~~aa 62 (376)
|++-.|| ||||||+-.+
T Consensus 9 iaIT~GDpaGIGpEii~ka 27 (330)
T 2hi1_A 9 VAITMGDPAGIGPEIIVKA 27 (330)
T ss_dssp EEEECCCTTTTHHHHHHHH
T ss_pred EEEcCCCCcchhHHHHHHH
Confidence 9999998 8999998644
No 108
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=20.78 E-value=3.5e+02 Score=23.94 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=86.2
Q ss_pred CCeeeEEEEcCCCCC---HHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCCCc
Q psy559 41 GGRNAVTMLPGGGIG---PELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSLDS 115 (376)
Q Consensus 41 ~~~~~I~vipGDGIG---pEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~~~ 115 (376)
++..+|+++-.+--. .++.....+.++..|..+.+.. .... .....+.++.+ ++.|+++..+...+.
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~---~~~~~~~~~~l~~~~vdgiI~~~~~~~~--- 84 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQ--IDAP---PRGTQQLSRLVSEGRVDGVLLQRREDFD--- 84 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEE--CCST---THHHHHHHHHHHSCSSSEEEECCCTTCC---
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEe--CCCC---hHHHHHHHHHHHhCCCcEEEEecCCCCc---
Confidence 356789887665433 5677777777777776665532 1110 01123345555 358888887754321
Q ss_pred h-hhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCC
Q psy559 116 L-WTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFG 194 (376)
Q Consensus 116 ~-~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~ 194 (376)
. ..-.++ . ++.+|++-...++ . .+ .+..-. ....+.|.++-.++|
T Consensus 85 ~~~~~~l~-----------------~-~iPvV~i~~~~~~---~-----~~----~V~~D~----~~~g~~a~~~L~~~G 130 (303)
T 3kke_A 85 DDMLAAVL-----------------E-GVPAVTINSRVPG---R-----VG----SVILDD----QKGGGIATEHLITLG 130 (303)
T ss_dssp HHHHHHHH-----------------T-TSCEEEESCCCTT---C-----CC----EEEECH----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHh-----------------C-CCCEEEECCcCCC---C-----CC----EEEECc----HHHHHHHHHHHHHCC
Confidence 2 222333 1 5666666433222 0 01 111111 234555666666678
Q ss_pred CCcEEEEecCCccccchHHHHHHHHHHHhhCC-C-----eeeeeeeHH---HHHHHH-----HhCCCCccEEecCC
Q psy559 195 RKKVTTVHKANIMKISDGLFLEISRKVAKEYP-E-----IEHNDMIID---NTCMQL-----VSNPKQFDVMVMPN 256 (376)
Q Consensus 195 rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP-~-----I~~e~~~vD---~~~~~L-----v~~P~~fdViV~~N 256 (376)
.+++-++.-..-.. +.....+-+++..+++. . +.....-.+ .++.+| ++...++|.|+|.|
T Consensus 131 ~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~n 205 (303)
T 3kke_A 131 HSRIAFISGTAIHD-TAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVVAS 205 (303)
T ss_dssp CCSEEEEESCSSCH-HHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESS
T ss_pred CCeEEEEeCCCcCc-cHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEECC
Confidence 88888885432221 22334444555444431 1 111112222 345677 77777899999988
No 109
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=20.78 E-value=1.2e+02 Score=28.34 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHhhCCCeeeeeeeH-----HHHHHHHHh---CCCCccEEecC
Q psy559 211 DGLFLEISRKVAKEYPEIEHNDMII-----DNTCMQLVS---NPKQFDVMVMP 255 (376)
Q Consensus 211 dglf~~~~~eva~eyP~I~~e~~~v-----D~~~~~Lv~---~P~~fdViV~~ 255 (376)
...|.+++++..++||+|+++...+ |....+|.. .-..+||+...
T Consensus 14 ~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~~kl~~~~~~g~~pDv~~~~ 66 (400)
T 2b3f_A 14 GPALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLKTRMLGGDPPDTFQVH 66 (400)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEEECCCGGGHHHHHHHHHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHHHHHHHCCCceEEEEecCCCcchhHHHHHHHHHhCCCCCCEEeec
Confidence 3578888888888999999887765 344444432 44567988776
No 110
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=20.62 E-value=2.8e+02 Score=25.35 Aligned_cols=175 Identities=11% Similarity=0.021 Sum_probs=81.9
Q ss_pred CeeeEEEEcCCCCCH---HHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHH--HhcCeEEEcccccCCCCch
Q psy559 42 GRNAVTMLPGGGIGP---ELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI--RRNGVAIKGNIETGSLDSL 116 (376)
Q Consensus 42 ~~~~I~vipGDGIGp---EV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~--~~~dail~G~i~~p~~~~~ 116 (376)
+..+|+++--+--.| ++.....+.++..|..+.+. .... +.....+.++.+ ++.|.+++.+...+ ..
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~---~~~~~~~~~~~l~~~~vdGiI~~~~~~~---~~ 140 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLG--YTAY---SPEREEQLVETMLRRRPEAMVLSYDGHT---EQ 140 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEE--ECTT---CHHHHHHHHHHHHHTCCSEEEEECSCCC---HH
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEE--eCCC---ChHHHHHHHHHHHhCCCCEEEEeCCCCC---HH
Confidence 457899886654333 45666666666667655442 2111 000112344444 35788887654321 11
Q ss_pred hhHHHhhhhcccEeecccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHHhCCCC
Q psy559 117 WTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRK 196 (376)
Q Consensus 117 ~~~~LR~~~ldLyan~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~rk 196 (376)
..-.|+ ..++.+|++-..... +.. ..+..-. +...+.|.++-.++|.+
T Consensus 141 ~~~~l~-----------------~~~iPvV~i~~~~~~----------~~~-~~V~~D~----~~~~~~a~~~L~~~G~r 188 (355)
T 3e3m_A 141 TIRLLQ-----------------RASIPIVEIWEKPAH----------PIG-HTVGFSN----ERAAYDMTNALLARGFR 188 (355)
T ss_dssp HHHHHH-----------------HCCSCEEEESSCCSS----------CSS-EEEECCH----HHHHHHHHHHHHHTTCC
T ss_pred HHHHHH-----------------hCCCCEEEECCccCC----------CCC-CEEEeCh----HHHHHHHHHHHHHCCCC
Confidence 122233 135777777221111 000 0111111 34455566666667888
Q ss_pred cEEEEecCCccccchHHHHHHHHHHHhhC----C-Ceeee--eeeHH---HHHHHHHhCCCCccEEecCC
Q psy559 197 KVTTVHKANIMKISDGLFLEISRKVAKEY----P-EIEHN--DMIID---NTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 197 ~Vt~v~KaNvl~~sdglf~~~~~eva~ey----P-~I~~e--~~~vD---~~~~~Lv~~P~~fdViV~~N 256 (376)
++-++.-..-.........+-+.+..+++ . .+.+. ....+ .++.+|+..+.++|.|+|.|
T Consensus 189 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~n 258 (355)
T 3e3m_A 189 KIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFCVS 258 (355)
T ss_dssp SEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEESS
T ss_pred eEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEEECC
Confidence 88777542211111223344444443333 1 12211 11122 34556777667899999987
No 111
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=20.55 E-value=62 Score=25.83 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=35.4
Q ss_pred cEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCC
Q psy559 197 KVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPN 256 (376)
Q Consensus 197 ~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~N 256 (376)
+.++||=..-.--.+.....++++++++||++.+-...+|.+ +.+|+|-..|.
T Consensus 24 ~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~-------~~~~~v~~~PT 76 (118)
T 3evi_A 24 VWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC-------IQHYHDNCLPT 76 (118)
T ss_dssp CEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT-------STTCCGGGCSE
T ss_pred CeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HHHCCCCCCCE
Confidence 355555322222246788889999999999998888888863 56776544443
No 112
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=20.54 E-value=45 Score=32.28 Aligned_cols=18 Identities=39% Similarity=0.838 Sum_probs=15.1
Q ss_pred eEEEEcCC--CCCHHHHHHH
Q psy559 45 AVTMLPGG--GIGPELMSYV 62 (376)
Q Consensus 45 ~I~vipGD--GIGpEV~~aa 62 (376)
+|++-.|| ||||||+-.+
T Consensus 4 ~iaIT~GDpaGIGpEii~ka 23 (328)
T 1yxo_A 4 RFALTPGEPAGIGPDLCLLL 23 (328)
T ss_dssp CEEEECCSTTSSHHHHHHHH
T ss_pred EEEEcCCCCcchhHHHHHHH
Confidence 58889998 8999998644
No 113
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=20.32 E-value=2.4e+02 Score=22.01 Aligned_cols=56 Identities=9% Similarity=0.201 Sum_probs=36.7
Q ss_pred eeeEEEEcCCCCCHHHHHH-HHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHHhcCeEEEccc
Q psy559 43 RNAVTMLPGGGIGPELMSY-VKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNI 108 (376)
Q Consensus 43 ~~~I~vipGDGIGpEV~~a-a~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~~dail~G~i 108 (376)
.++|.++=|.|+|-.++.. ..+.++..+++++.+.+.++.. + +.+.++|++|.+|-
T Consensus 4 ~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~-------~---~~~~~~D~Ii~t~~ 60 (109)
T 2l2q_A 4 SMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRL-------S---EVVDRFDVVLLAPQ 60 (109)
T ss_dssp CEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTH-------H---HHTTTCSEEEECSC
T ss_pred ceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHH-------H---hhcCCCCEEEECCc
Confidence 4779999999999985543 2344555577777655554321 1 12467999988773
No 114
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=20.17 E-value=2.2e+02 Score=24.98 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=39.5
Q ss_pred eeEEEEcCC-CC--CHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCChHHHHHHHHhcCeEEEcc
Q psy559 44 NAVTMLPGG-GI--GPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGN 107 (376)
Q Consensus 44 ~~I~vipGD-GI--GpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~~dail~G~ 107 (376)
.+|++||=. |. -.|-.+...+.|+.+|.++++ +++-. ..+++..+.++++|+++++-
T Consensus 28 ~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~--~~i~~-----~~~~~~~~~l~~ad~I~l~G 87 (206)
T 3l4e_A 28 KTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEE--LDIAT-----ESLGEITTKLRKNDFIYVTG 87 (206)
T ss_dssp CEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEE--CCTTT-----SCHHHHHHHHHHSSEEEECC
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEE--EEecC-----CChHHHHHHHHhCCEEEECC
Confidence 799999832 21 136888999999999975544 22211 23666778899999999844
No 115
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=20.11 E-value=70 Score=23.97 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEE
Q psy559 176 AANSYRLSKYAFEYAKKFGRKKVTTV 201 (376)
Q Consensus 176 r~~~eRiar~AFe~A~~r~rk~Vt~v 201 (376)
...++.|++.|.++++..+|++||.-
T Consensus 37 Eyr~~eI~qeA~kfmrHakRk~Lt~~ 62 (70)
T 1taf_B 37 SIKLKRIVQDAAKFMNHAKRQKLSVR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCeecHH
Confidence 44577899999999999888887753
Done!