RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy559
(376 letters)
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A
3blv_A*
Length = 349
Score = 431 bits (1111), Expect = e-152
Identities = 146/350 (41%), Positives = 218/350 (62%), Gaps = 21/350 (6%)
Query: 32 KEVYTKAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLE 91
E KYGGR VT++PG G+G E+ V+ +F +P+D+ET+ I + +
Sbjct: 6 AERTLPKKYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHK-EGVY 64
Query: 92 YAITSIRRNGVAIKGNIET----GSLDSLWTLKLCRLILR---------VIAMMILSVRC 138
A+ S++RN + +KG T SL + LR + + V+
Sbjct: 65 EAVESLKRNKIGLKGLWHTPADQTGHGSL------NVALRKQLDIYANVALFKSLKGVKT 118
Query: 139 RQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKV 198
R ID++++R+NTEGE++ LEHESV GVVES+K++T + R++++AF++AKK+ RK V
Sbjct: 119 RIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSV 178
Query: 199 TTVHKANIMKISDGLFLEISRKVA-KEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNL 257
T VHKANIMK+ DGLF I ++ KEYP+I+ + +I+DN MQ V+ P QFDV+V P++
Sbjct: 179 TAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSM 238
Query: 258 YGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDM 317
YG I N+ LIGG GL++G N+G YAVFEPG+R+ G I G+N+ANP AM+ +S M
Sbjct: 239 YGTILGNIGAALIGGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLM 298
Query: 318 LEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQT 367
L HLG ++A+ I A+ +TI E K T D+GG++++ D II + T
Sbjct: 299 LNHLGLNEYATRISKAVHETIAEGKHTTRDIGGSSSTTDFTNEIINKLST 348
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B*
3blv_B
Length = 354
Score = 420 bits (1081), Expect = e-147
Identities = 124/347 (35%), Positives = 197/347 (56%), Gaps = 19/347 (5%)
Query: 32 KEVYTKAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDL- 90
+ G+ V+ + G GIGPE+ VK++F A VP+++E+ + P +
Sbjct: 10 RYTGKPNPSTGKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIFVNGLTTI 69
Query: 91 -EYAITSIRRNGVAIKGNIET---GSLDSLWTLKLCRL------ILRVIAMMILSVRCRQ 140
+ A+ SI +N VA+KG + T SL L L + + + I +
Sbjct: 70 PDPAVQSITKNLVALKGPLATPIGKGHRSL-NLTLRKTFGLFANVRPAKS--IEGFKTTY 126
Query: 141 QGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTT 200
+ +D+V++R+NTEGEY+ +EH GVV+S+K+IT S R+ +YAFEYA+ GR +V
Sbjct: 127 ENVDLVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIV 186
Query: 201 VHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFD--VMVMPNLY 258
VHK+ I +++DGLF+ ++++++KEYP++ +IDN+ +++V+NP + V V PNLY
Sbjct: 187 VHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLY 246
Query: 259 GAITSNVICGL-IGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDM 317
G I S++ GL G GL N G ++FE + IAG++ ANP A+L +SV M
Sbjct: 247 GDILSDLNSGLSAGSLGLTPSANIGHKISIFEA-VHGSAPDIAGQDKANPTALLLSSVMM 305
Query: 318 LEHLGHMKHASIIKLAIEKTINED-KIHTPDLGGTATSIDVVQNIIK 363
L H+G HA I+ A+ TI + T DL GTAT+ + +IK
Sbjct: 306 LNHMGLTNHADQIQNAVLSTIASGPENRTGDLAGTATTSSFTEAVIK 352
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
NAP CIT; 1.80A {Thermus thermophilus}
Length = 496
Score = 422 bits (1086), Expect = e-146
Identities = 112/342 (32%), Positives = 176/342 (51%), Gaps = 16/342 (4%)
Query: 37 KAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDD----LEY 92
GR +T++PG GIGPE + +V A P+ +E + +
Sbjct: 13 HVLEDGRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQE 72
Query: 93 AITSIRRNGVAIKGNIET---GSLDSL-----WTLKLCRLILRVIAMMILSVRCRQQGID 144
I SIR+ V +KG +ET S + + V + +GID
Sbjct: 73 TIESIRKTRVVLKGPLETPVGYGEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGID 132
Query: 145 IVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKA 204
+V+VR+N E YA +EH V +++K+I+ S ++ ++AFE A+ GRKKV K+
Sbjct: 133 LVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKS 192
Query: 205 NIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSN 264
NIMK+++G +VA+EYP+IE +I+DN QLV P+QF+V+V N+ G I S+
Sbjct: 193 NIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSD 252
Query: 265 VICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHM 324
+ GLIGG G N G+ A+FE + AGKN+ NP A+L ++V ML +L
Sbjct: 253 LTSGLIGGLGFAPSANIGNEVAIFEA-VHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEF 311
Query: 325 KHASIIKLAIEKTINEDKIHTPDLGG---TATSIDVVQNIIK 363
A +I+ A+ T+ E ++ T D+ G A + + + II+
Sbjct: 312 ATADLIENALLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQ 353
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus
tokodaii} SCOP: c.77.1.1
Length = 336
Score = 373 bits (961), Expect = e-129
Identities = 114/337 (33%), Positives = 173/337 (51%), Gaps = 26/337 (7%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKS--DSNDDL-EYAITSIR 98
V ++ G GIGPE++S K + +P+++ V+ ++ + L + ++ I
Sbjct: 4 VALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIID 63
Query: 99 RNGVAIKGNIETGSLDSLWTLKLCRLILRVIA-----MMILSVRCRQQGIDIVIVRQNTE 153
+ + +KG + + D + L R I + A I + + +DI+IVR+NTE
Sbjct: 64 KADIILKGPVGESAADVVVKL---RQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTE 120
Query: 154 GEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGL 213
Y EH DGV MKIIT S R++K +A + RKKVT VHKAN+M+I+DGL
Sbjct: 121 DLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFALR-RRKKVTCVHKANVMRITDGL 179
Query: 214 FLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGA 273
F E R V K ++E+++M +D LV NP+ FDV+V N+YG I S+ + G
Sbjct: 180 FAEACRSVLK--GKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSL 237
Query: 274 GLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKH------- 326
G+ N GD A+FEP IAGKNI NP A L + M E + + +
Sbjct: 238 GIAPSANIGDKKALFEP-VHGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKA 296
Query: 327 ASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
+ ++ AI E K TPD+GG AT+ D++ I
Sbjct: 297 SRALENAIYLVYKERKALTPDVGGNATTDDLINEIYN 333
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase, lysine biosyn; 1.85A {Thermus
thermophilus} PDB: 3asj_A* 3ah3_A
Length = 333
Score = 354 bits (910), Expect = e-122
Identities = 106/336 (31%), Positives = 174/336 (51%), Gaps = 21/336 (6%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQI--DPKSDSNDDL-EYAITSIRRNGV 102
+ ++ G GIG E++ + V G+P++F + + + E + I
Sbjct: 4 ICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHA 63
Query: 103 AIKGNIET--GSLDSLWT--LKLCRLI-----LRVIAMMILSVRCRQQGIDIVIVRQNTE 153
+ G + + + L R + +R V + G+D+VIVR+NTE
Sbjct: 64 TLFGAATSPTRKVPGFFGAIRYLRRRLDLYANVRPAK--SRPVPGSRPGVDLVIVRENTE 121
Query: 154 GEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGL 213
G Y E V + +I+ S R+ + A A+ RK + HKAN++ ++ GL
Sbjct: 122 GLYVEQERR-YLDVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGL 180
Query: 214 FLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGA 273
FL+ ++VAK++P + D+I+DN MQLV P++FDV+V NL G I S++ GL+GG
Sbjct: 181 FLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGL 240
Query: 274 GLISGKNYGDHYAVFEPGTRNTGTA--IAGKNIANPIAMLNASVDMLEHLGHMKHASIIK 331
GL N GD AVFEP G+A IAGK IANP A + ++ ML++LG + A ++
Sbjct: 241 GLAPSGNIGDTTAVFEP---VHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVE 297
Query: 332 LAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQT 367
A++ + E TPDLGG AT+ + +++ +++
Sbjct: 298 KAVDLVL-ERGPRTPDLGGDATTEAFTEAVVEALKS 332
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative
decarboxylase, amino-acid biosynthes lysine
biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB:
3ty3_A
Length = 366
Score = 320 bits (822), Expect = e-108
Identities = 99/360 (27%), Positives = 172/360 (47%), Gaps = 46/360 (12%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAG--VPVDFETVQIDPKSDSNDDL-----EYAITSIR 98
+ ++P GIG E++ + + + F+ + +D + + E + ++
Sbjct: 13 LGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLK 72
Query: 99 RN-GVAIKGNIETGSLD-----SLWTLKLCRLI-----LRVIAMMILSVRCRQQGIDIVI 147
A+ G +++ + S + L + + +R + + + +D+VI
Sbjct: 73 TECNAALFGAVQSPTHKVAGYSSPI-VALRKKMGLYANVRP-VKSLDGAKGK--PVDLVI 128
Query: 148 VRQNTEGEYAMLEHESVDG----VVESMKIITAANSYRLSKYAFEYAKK----------- 192
VR+NTE Y E + V E+++ I+ S ++ K AFE AK
Sbjct: 129 VRENTECLYVKEERMVQNTPGKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYS 188
Query: 193 -FGRKKVTTVHKANIMKISDGLFLEISRKV---AKEYPEIEHNDMIIDNTCMQLVSNPKQ 248
+ VT +HK+N+M ++DGLF E R Y I ++ I+D+ +L P+
Sbjct: 189 IHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFREPEC 248
Query: 249 FDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTA--IAGKNIAN 306
FDV+V PNLYG I S+ LIG GL+ N GD++ + EP G+A IAG+ IAN
Sbjct: 249 FDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDNFVMSEP---VHGSAPDIAGRGIAN 305
Query: 307 PIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQ 366
P+A + MLE +GH A+ I A++K + E K+ TPDLGG + + ++ ++ +
Sbjct: 306 PVATFRSVALMLEFMGHQDAAADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDAVLANIH 365
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
domain swapping, phosphorylation, aromatic cluster,
NADP; 2.5A {Archaeoglobus fulgidus}
Length = 412
Score = 303 bits (778), Expect = e-100
Identities = 102/388 (26%), Positives = 157/388 (40%), Gaps = 80/388 (20%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKS--DSNDDL-EYAITSIR 98
+ G GIG +++ V A G V + V + + L + + +I+
Sbjct: 30 IPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIK 89
Query: 99 RNGVAIKGNIET---GSLDSL-----WTLKL------CRLILRVIAMMILSVRCRQQGID 144
VA+KG + T G SL L L + V S + ++
Sbjct: 90 EFRVALKGPLTTPVGGGYRSLNVTIRQVLDLYANVRPVYYLKGVP-----SPIKHPEKVN 144
Query: 145 IVIVRQNTEGEYAMLEHES--------------------VDGVVESMKIITAANSYRLSK 184
VI R+NTE YA +E + +K I+ + RL +
Sbjct: 145 FVIFRENTEDVYAGIEWPRGSEEALKLIRFLKNEFGVTIREDSGIGIKPISEFATKRLVR 204
Query: 185 YAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY------------------- 225
A YA + RK VT VHK NIMK ++G F + +VAK+
Sbjct: 205 MAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQ 264
Query: 226 --PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGD 283
+I D I DN Q+++ ++DV+ +PNL G S+ LIGG G+ G N GD
Sbjct: 265 PEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIGD 324
Query: 284 HYAVFEPGTRNT-GTA--IAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINE 340
VFEP G+A AG+N NP A + M E++G + +IK A+E TI
Sbjct: 325 GIGVFEP----VHGSAPKYAGQNKVNPTAEILTGALMFEYIGWKDASEMIKKAVEMTI-S 379
Query: 341 DKIHTPDL-----GGTATSIDVVQNIIK 363
I T D+ G + + + +++
Sbjct: 380 SGIVTYDIHRHMGGTKVGTREFAEAVVE 407
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex,
oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB:
1v94_A 1xgv_A 1xkd_A*
Length = 435
Score = 301 bits (774), Expect = e-100
Identities = 104/401 (25%), Positives = 165/401 (41%), Gaps = 86/401 (21%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQID---------PKSDSNDDL-EYAIT 95
V + G G+GPE++ +V A V + +I + + L + +
Sbjct: 38 VAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLE 97
Query: 96 SIRRNGVAIKGNIET---GSLDSLWTLKLCRLILR-----------VIAMMILSVRCRQQ 141
IR VA+KG +ET SL + +R V +
Sbjct: 98 GIRLARVALKGPLETPVGTGYRSL------NVAIRQALDLYANIRPVRYYGQPAPHKYAD 151
Query: 142 GIDIVIVRQNTEGEYAMLEHES--------------------VDGVVESMKIITAANSYR 181
+D+VI R+NTE YA +E + +K I+ + R
Sbjct: 152 RVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGISIREDAGIGVKPISRFATRR 211
Query: 182 LSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY---------------- 225
L + A E+A + G VT +HK NIMK ++G F+ + +VA E
Sbjct: 212 LMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYG 271
Query: 226 -----PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKN 280
+I ND I DN Q+++ P + V+V PNL G S+ L+GG G+ +G N
Sbjct: 272 GVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMN 331
Query: 281 YGDHYAVFEPGTRNT-GTA--IAGKNIANPIAMLNASVDML-EHLGHMKHASIIKLAIEK 336
GD AV EP GTA AGK++ NP A + ++ ++ E +G + SI++ AI K
Sbjct: 332 MGDGIAVAEP----VHGTAPKYAGKDLINPSAEILSASLLIGEFMGWREVKSIVEYAIRK 387
Query: 337 TINEDKIHTPDLGGTATSIDVV------QNIIKLVQTNDLR 371
+ + K T DL + + + +I + DL
Sbjct: 388 AV-QSKKVTQDLARHMPGVQPLRTSEYTETLIAYIDEADLN 427
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase;
homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii
str} PDB: 2dht_A 2e5m_A*
Length = 409
Score = 298 bits (766), Expect = 6e-99
Identities = 101/388 (26%), Positives = 166/388 (42%), Gaps = 80/388 (20%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYA-------GVPVDFETVQIDPKS--DSNDDL-EYAIT 95
+ + G GIGPE+ + +V A + + V K+ ND +
Sbjct: 27 ILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQE 86
Query: 96 SIRRNGVAIKGNIET---GSLDSL-----WTLKL------CRLILRVIAMMILSVRCRQQ 141
+ + V +KG +ET S+ L L + I + S +
Sbjct: 87 MLLKYRVVLKGPLETPIGKGWKSVNVAIRLMLDLYANIRPVKYIEGLE-----SPLKHPE 141
Query: 142 GIDIVIVRQNTEGEYAMLEHES--------------------VDGVVESMKIITAANSYR 181
+D++I R+NT+ Y +E+ D +K+++ + R
Sbjct: 142 KVDMIIFRENTDDLYRGIEYPFNSEEAKKIRDFLRKELKVEIEDDTGIGIKVMSKYKTQR 201
Query: 182 LSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVA-KEYPE------------- 227
+++ A +YA + RKKVT +HK N+MK ++G F E + +VA KEY +
Sbjct: 202 ITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGKP 261
Query: 228 ----IEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGD 283
I ND I DN Q++ P+++D+++ PN+ G S+ LIG G++ G N GD
Sbjct: 262 DQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANIGD 321
Query: 284 HYAVFEPGTRNT-GTA--IAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINE 340
+FE GTA AGKN+ANP ++ A ML +G + A +I+ AI I
Sbjct: 322 EGGMFEA----IHGTAPKYAGKNVANPTGIIKAGELMLRWMGWNEAADLIEKAINMAI-R 376
Query: 341 DKIHTPDL-----GGTATSIDVVQNIIK 363
DK T D+ + + +IK
Sbjct: 377 DKKVTQDIARFMGVKALGTKEYADELIK 404
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural
genomics center for infectious ssgcid, glyoxylate
bypass, manganese; 1.65A {Burkholderia pseudomallei}
PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A
1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A*
1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ...
Length = 427
Score = 294 bits (755), Expect = 4e-97
Identities = 94/396 (23%), Positives = 154/396 (38%), Gaps = 88/396 (22%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYA-------GVPVDFETVQI----DPKSDSNDDL-EYA 93
+ + G G G ++ + +V A + + + + L E
Sbjct: 39 IPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEET 98
Query: 94 ITSIRRNGVAIKGNIET---GSLDSL-----WTLKL------CRLILRVIAMMILSVRCR 139
+ ++ V+IKG + T G + SL L L + V S
Sbjct: 99 LQVLKEYVVSIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPIQYFKGV-----PSPVRE 153
Query: 140 QQGIDIVIVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITA 176
+ ++VI R+N+E YA +E + + +K ++
Sbjct: 154 PEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIKFLQEEMGVKKIRFPQTSGIGIKPVSK 213
Query: 177 ANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY----------- 225
+ RL + A +YA RK VT VHK NIMK ++G F + +A++
Sbjct: 214 EGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPW 273
Query: 226 ---------PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLI 276
EI D I D Q++ P ++DV+ NL G S+ + +GG G+
Sbjct: 274 MKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIA 333
Query: 277 SGKNYGDHYAVFEPGTRNT-GTA--IAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLA 333
G N D A+FE T GTA AGK+ NP + + ++ ML HLG + A +I A
Sbjct: 334 PGANLSDSVAMFEA----THGTAPKYAGKDYVNPGSEILSAEMMLRHLGWTEAADVIISA 389
Query: 334 IEKTINEDKIHTPDL------GGTATSIDVVQNIIK 363
+EK+I + K T D + Q +I+
Sbjct: 390 MEKSI-KQKRVTYDFARLMEGATQVSCSGFGQVLIE 424
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic
acid cycle, oxidoreductase, protein phosphorylation,
NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP:
c.77.1.1
Length = 423
Score = 268 bits (688), Expect = 3e-87
Identities = 100/404 (24%), Positives = 167/404 (41%), Gaps = 91/404 (22%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYA-------GVPVDFETVQIDPKS-DSNDDL--EYAIT 95
+ + G G GP++ + +V A + ++ V K+ + + +
Sbjct: 22 IPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLD 81
Query: 96 SIRRNGVAIKGNIET---GSLDSLWTLKLCRLI-----LRVIAMM--ILSVRCRQQGIDI 145
IR +AIKG + T G + SL + L + + LR + + S R + D+
Sbjct: 82 VIREYFIAIKGPLTTPVGGGIRSL-NVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDM 140
Query: 146 VIVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITAANSYRL 182
VI R+NTE YA +E+ V+ +K ++ + RL
Sbjct: 141 VIFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRL 200
Query: 183 SKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY----------------- 225
+ A +YA + GRK VT VHK NIMK ++G F ++A++
Sbjct: 201 VRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEE 260
Query: 226 ----------------PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGL 269
+I D I D Q+++ P +FDV+ NL G S+ +
Sbjct: 261 QGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQ 320
Query: 270 IGGAGLISGKNYGDH--YAVFEPGTRNTGTA--IAGKNIANPIAMLNASVDMLEHLGHMK 325
+GG G+ G N +A+FE T GTA AG + NP +++ + V +LEHLG +
Sbjct: 321 VGGIGIAPGANINYETGHAIFEA-TH--GTAPKYAGLDKVNPSSVILSGVLLLEHLGWNE 377
Query: 326 HASIIKLAIEKTINEDKIHTPDL------GGTATSIDVVQNIIK 363
A ++ ++EKTI K+ T D + + +IK
Sbjct: 378 AADLVIKSMEKTI-ASKVVTYDFARLMDGATEVKCSEFGEELIK 420
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein,
isocitrate/isopropylmalate dehydrogenase-like fold,
oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus
thiooxidans}
Length = 429
Score = 260 bits (666), Expect = 9e-84
Identities = 96/408 (23%), Positives = 156/408 (38%), Gaps = 99/408 (24%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDP-----------KSDSNDDL-EYA 93
+ + G GIG ++ ++ V A V QI L +
Sbjct: 29 IPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDET 88
Query: 94 ITSIRRNGVAIKGNIETGSLDSLWTLKL--------------CRLILRVIAMMILSVRCR 139
+ +IR VAIKG +ET + +L + R S
Sbjct: 89 MAAIREYKVAIKGPLETPVGGGIRSLNVAMRQDLDLYVCLRPVRYFEGTP-----SPMRH 143
Query: 140 QQGIDIVIVRQNTEGEYAMLEHESV-----------------------DGVVESMKIITA 176
+ +D+VI R+N+E YA +E + D +K ++
Sbjct: 144 PEKVDMVIFRENSEDIYAGIEWPAGSPEAEKIIRFLREEMGVTKIRFPDSSAIGIKPVST 203
Query: 177 ANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKE------------ 224
S RL + +YA + G+ V+ VHK NIMK ++G F + +A+
Sbjct: 204 EGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQK 263
Query: 225 ---------------------YPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITS 263
++ D+I DN Q++ P+ + V+ NL G S
Sbjct: 264 AAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVS 323
Query: 264 NVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTA--IAGKNIANPIAMLNASVDMLEHL 321
+ + +GG G+ G N D +A+FE T GTA IAG+ ANP +++ ++V MLEHL
Sbjct: 324 DALAAEVGGIGMAPGANLSDTHAIFEA-TH--GTAPDIAGQGKANPSSLILSAVMMLEHL 380
Query: 322 GHMKHASIIKLAIEKTINEDKIHTPDLGG------TATSIDVVQNIIK 363
G + A I A+ TI T DL ++ + +I+
Sbjct: 381 GWGEAAQAIVAAMNATI-AAGEVTGDLAALRGDVPALSTTEFTAALIR 427
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium,
manganese, NAD, oxidoreductase; HET: NAD; 2.00A
{Pseudomonas putida} PDB: 3fmx_X*
Length = 364
Score = 221 bits (566), Expect = 1e-69
Identities = 84/242 (34%), Positives = 124/242 (51%), Gaps = 18/242 (7%)
Query: 138 CRQQGIDIVIVRQNTEGEYA----MLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKF 193
+ ID V+VR+NTEGEY+ ++ + + +V I T R+ KYAF+ A+K
Sbjct: 123 RKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIFTRRGVDRILKYAFDLAEKR 182
Query: 194 GRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMV 253
RK VT+ K+N M IS + + + +A YP + + ID C + V P++FDV+V
Sbjct: 183 ERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVV 242
Query: 254 MPNLYGAITSNVICGLIGGAGLISGKNYGD---HYAVFEPGTRNTGTA--IAGKNIANPI 308
NL+G I S++ G G+ N ++FEP G+A I GKNIANPI
Sbjct: 243 ASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEP---VHGSAPDIFGKNIANPI 299
Query: 309 AMLNASVDMLEHLGHM-----KHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
AM+ + MLE LG + + AIE+ I D TPD+GGT ++ V I
Sbjct: 300 AMIWSGALMLEFLGQGDERYQRAHDDMLNAIERVI-ADGSVTPDMGGTLSTQQVGAAISD 358
Query: 364 LV 365
+
Sbjct: 359 TL 360
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine
biosynthesis, NAD, ST genomics, PSI, protein structure
initiative; 1.65A {Mycobacterium tuberculosis} SCOP:
c.77.1.1 PDB: 2g4o_A
Length = 337
Score = 183 bits (467), Expect = 4e-55
Identities = 91/342 (26%), Positives = 151/342 (44%), Gaps = 57/342 (16%)
Query: 49 LPGGGIGPELMSYVKEVFRYAGVPVDFETVQI---------DPKSDSNDDLEYAITSIRR 99
+ G GIGPE+ + +V V + + + D + R
Sbjct: 7 IAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPD--SVVAEL-----R 59
Query: 100 NGVAI-----------KGNIETGSLDSLWTLKLCRLI-----LRVIAMM--ILSVRCRQQ 141
N AI G +E G L L+L + LR + + S
Sbjct: 60 NHDAILLGAIGDPSVPSGVLERGLL-----LRLRFELDHHINLRPARLYPGVASPLSGNP 114
Query: 142 GIDIVIVRQNTEGEYA-----MLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRK 196
GID V+VR+ TEG Y + + E + TA R+ AFE A++ RK
Sbjct: 115 GIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVS-VNTAFGVRRVVADAFERARR-RRK 172
Query: 197 KVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPN 256
+T VHK N++ + GL+L +V + YP++E +D + ++++P +FDV+V N
Sbjct: 173 HLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDN 232
Query: 257 LYGAITSNVICGLIGGAGLISGKN---YGDHYAVFEPGTRNTGTA--IAGKNIANPIAML 311
L+G I +++ + GG GL + N + ++FEP G+A IAG+ IA+P A +
Sbjct: 233 LFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEP---VHGSAPDIAGQGIADPTAAI 289
Query: 312 NASVDMLEHLGHMKHASIIKLAIEKTINED---KIHTPDLGG 350
+ +L HLG A+ + A+E + ++ T D+G
Sbjct: 290 MSVALLLSHLGEHDAAARVDRAVEAHLATRGSERLATSDVGE 331
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine
biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus}
PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A
2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A
1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Length = 359
Score = 153 bits (390), Expect = 1e-43
Identities = 78/241 (32%), Positives = 129/241 (53%), Gaps = 20/241 (8%)
Query: 141 QGIDIVIVRQNTEGEY-----AMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGR 195
+G+D++IVR+ T G Y M E E+ + S + R+++ AFE A+K R
Sbjct: 127 RGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVE-----RVARVAFEAARK-RR 180
Query: 196 KKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMP 255
K V +V KAN++++ + + + +V + YP++ +D M LV +P +FDV+V
Sbjct: 181 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 239
Query: 256 NLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTA--IAGKNIANPIAMLNA 313
N++G I S++ L G GL+ + G VFEP G+A IAGK IANP A + +
Sbjct: 240 NIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPV---HGSAPDIAGKGIANPTAAILS 296
Query: 314 SVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQTNDLRH 372
+ MLEH G ++ A ++ A+ K + + PDLGG+A + +++ + L H
Sbjct: 297 AAMMLEHAFGLVELARKVEDAVAKAL--LETPPPDLGGSAGTEAFTATVLRHLAAAALEH 354
Query: 373 H 373
H
Sbjct: 355 H 355
Score = 29.8 bits (68), Expect = 1.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDFE 76
V +LPG GIGPE+ +V R
Sbjct: 6 VAVLPGDGIGPEVTEAALKVLRALDEAEGLG 36
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid,
oxidoreductase; 1.85A {Campylobacter jejuni} PDB: 3udo_A
Length = 361
Score = 147 bits (374), Expect = 2e-41
Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 21/222 (9%)
Query: 140 QQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVT 199
Q+G+DI+ VR+ T G Y + + ++ I T R+++ AFE A+ +KKV
Sbjct: 131 QKGVDILCVRELTGGIYFGKQDLGKESAYDTE-IYTKKEIERIARIAFESARI-RKKKVH 188
Query: 200 TVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYG 259
+ KAN++ S L+ E+ VAK+Y +I M +DN MQ+V NP FDVM+ NL+G
Sbjct: 189 LIDKANVLASSI-LWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFDVMLCSNLFG 247
Query: 260 AITSN---VICGLIG---GAGLISGKNYGDHYAVFEPGTRNTGTA--IAGKNIANPIAML 311
I S+ I G +G A L + K +G ++EP G+A IA NIANPIA +
Sbjct: 248 DILSDELAAINGSLGLLSSASL-NDKGFG----LYEPA---GGSAPDIAHLNIANPIAQI 299
Query: 312 NASVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTA 352
++ ML++ + A I+ AI + T DL +
Sbjct: 300 LSAALMLKYSFKEEQAAQDIENAISLAL-AQGKMTKDLNAKS 340
Score = 29.8 bits (68), Expect = 1.4
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDFE 76
V +L G GIGP +M ++ + +F
Sbjct: 9 VAVLAGDGIGPLVMKEALKILTFIAQKYNFS 39
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase,
decarboxylating dehydrogenase, leucine biosynthesis;
HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP:
c.77.1.1
Length = 358
Score = 147 bits (373), Expect = 3e-41
Identities = 63/221 (28%), Positives = 118/221 (53%), Gaps = 15/221 (6%)
Query: 141 QGIDIVIVRQNTEGEY-----AMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGR 195
+ +DI++VR+ T Y + + +M + R++ AF A+ R
Sbjct: 125 RDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTM-VYDEDEIRRIAHVAFRAAQG-RR 182
Query: 196 KKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMP 255
K++ +V KAN+++ + L+ E+ +VA++YP++ + M +DN MQL+ P QFDV++
Sbjct: 183 KQLCSVDKANVLETTR-LWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTG 241
Query: 256 NLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTA--IAGKNIANPIAMLNA 313
N++G I S+ L G G++ + G+ A++EP G+A IAG++ ANP+A + +
Sbjct: 242 NMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPI---HGSAPDIAGQDKANPLATILS 298
Query: 314 SVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTAT 353
ML H L A ++ A+++ + + + T D+ T
Sbjct: 299 VAMMLRHSLNAEPWAQRVEAAVQRVL-DQGLRTADIAAPGT 338
Score = 29.8 bits (68), Expect = 1.5
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDFE 76
+ + G GIGPE+++ ++V
Sbjct: 4 IAIFAGDGIGPEIVAAARQVLDAVDQAAHLG 34
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI,
protein structure initiative, joint center for structu
genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Length = 366
Score = 145 bits (368), Expect = 2e-40
Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 20/222 (9%)
Query: 140 QQGIDIVIVRQNTEGEY-----AMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFG 194
G+D+V VR+ + G Y + E + D ++ K + R+++ AFE AK
Sbjct: 137 GSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTMIYDRKTVE-----RIARTAFEIAKN-R 190
Query: 195 RKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVM 254
RKKVT+V KAN++ S L+ ++ +VA+EYP++E + +DN MQL+ P QFDV++
Sbjct: 191 RKKVTSVDKANVLYSSM-LWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDVILT 249
Query: 255 PNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTA--IAGKNIANPIAMLN 312
N++G I S+ L G GL+ ++GD ++EP G+A IAGKNIANPIA +
Sbjct: 250 TNMFGDILSDESAALPGSLGLLPSASFGDK-NLYEPA---GGSAPDIAGKNIANPIAQIL 305
Query: 313 ASVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTAT 353
+ MLEH G ++ A I+ A+E I E+ T D+
Sbjct: 306 SLAMMLEHSFGMVEEARKIERAVELVI-EEGYRTRDIAEDPE 346
Score = 29.9 bits (68), Expect = 1.3
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDFE 76
+ +LPG GIGPE++ +V
Sbjct: 15 IAVLPGDGIGPEVVREALKVLEVVEKKTGKT 45
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase; HET: IPM; 1.48A {Shewanella benthica}
PDB: 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A*
3vl3_A*
Length = 375
Score = 143 bits (362), Expect = 2e-39
Identities = 78/237 (32%), Positives = 123/237 (51%), Gaps = 34/237 (14%)
Query: 140 QQGIDIVIVRQNTEGEY---------AMLEHESVDGVVESMKIITAANSYRLSKYAFEYA 190
++G DI+ VR+ T G Y E+ D + S K I R++K AFE A
Sbjct: 138 EKGFDILCVRELTGGIYFGKPKGRQGEGENEEAFDTMRYSRKEIR-----RIAKIAFESA 192
Query: 191 KKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFD 250
+ RKKVT+V KAN++ S L+ E+ +VAK+YP++E + IDN MQL+ P +FD
Sbjct: 193 QG-RRKKVTSVDKANVLACSV-LWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFD 250
Query: 251 VMVMPNLYGAITSN---VICGLIG---GAGLISGKNYGDHYAVFEPGTRNTGTA--IAGK 302
VM+ NL+G I S+ ++ G +G + + + +G ++EP G+A IAG+
Sbjct: 251 VMLCSNLFGDIVSDEIAMLTGSMGLLASISM-NSQGFG----MYEPA---GGSAPDIAGQ 302
Query: 303 NIANPIAMLNASVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVV 358
IANP+A + ++ +L H L A I+ A+ K + D T +L +
Sbjct: 303 GIANPVAQILSAALLLRHSLKLEDAALAIEAAVSKAL-SDGYLTCELLPASERSQAK 358
Score = 29.9 bits (68), Expect = 1.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDFE 76
+ +L G GIGPE+M+ ++V D
Sbjct: 16 IAVLAGDGIGPEVMAEARKVLAAVEKRFDLS 46
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase);
oxidoreductase, leucine biosynthetic pathway,
NAD-dependant enzyme; 1.76A {Salmonella typhimurium}
SCOP: c.77.1.1 PDB: 1cm7_A
Length = 363
Score = 142 bits (361), Expect = 2e-39
Identities = 85/234 (36%), Positives = 131/234 (55%), Gaps = 34/234 (14%)
Query: 140 QQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAAN--SY------RLSKYAFEYAK 191
G DI+ VR+ T G Y + + G S + A + Y R+++ AFE A+
Sbjct: 129 ANGFDILCVRELTGGIY-FGQPK---GREGSGQYEKAFDTEVYHRFEIERIARIAFESAR 184
Query: 192 KFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDV 251
K R+KVT++ KAN+++ S L+ EI VAK YP++E M IDN MQL+ +P QFDV
Sbjct: 185 K-RRRKVTSIDKANVLQSSI-LWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDV 242
Query: 252 MVMPNLYGAITSN---VICGLIG---GAGLISGKNYGDHYAVFEPGTRNTGTA--IAGKN 303
++ NL+G I S+ +I G +G A L + + +G ++EP G+A IAGKN
Sbjct: 243 LLCSNLFGDILSDECAMITGSMGMLPSASL-NEQGFG----LYEPA---GGSAPDIAGKN 294
Query: 304 IANPIAM-LNASVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSI 355
IANPIA L+ ++ +L + L A+ I+ AI + + E+ + T DL A ++
Sbjct: 295 IANPIAQILSLAL-LLRYSLDANDAATAIEQAINRAL-EEGVRTGDLARGAAAV 346
Score = 29.8 bits (68), Expect = 1.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDFE 76
+ +LPG GIGPE+M+ +V D
Sbjct: 7 IAVLPGDGIGPEVMAQALKVMDAVRSRFDMR 37
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate
and isopropylmalate dehydrogenases family, biosynthesis;
2.25A {Arabidopsis thaliana}
Length = 405
Score = 143 bits (362), Expect = 4e-39
Identities = 75/228 (32%), Positives = 122/228 (53%), Gaps = 27/228 (11%)
Query: 141 QGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSY------RLSKYAFEYAKKFG 194
+G+D+++VR+ T G Y E + ++ Y R+++ AFE A+K
Sbjct: 166 EGVDLMVVRELTGGIY-FGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARK-R 223
Query: 195 RKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVM 254
R K+ +V KAN+++ S L+ + +A EYP++E + M +DN MQLV +PKQFD +V
Sbjct: 224 RGKLCSVDKANVLEASI-LWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVT 282
Query: 255 PNLYGAITSN---VICGLIG---GAGLISGKNYGDHYAVFEPGTRNTGTA--IAGKNIAN 306
N++G I S+ +I G IG A L S G +FEP G+A IAG++ AN
Sbjct: 283 NNIFGDILSDEASMITGSIGMLPSASL-SDSGPG----LFEPI---HGSAPDIAGQDKAN 334
Query: 307 PIAMLNASVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTAT 353
P+A + ++ +L++ LG K A I+ A+ + + T D+ T
Sbjct: 335 PLATILSAAMLLKYGLGEEKAAKRIEDAVLVAL-NNGFRTGDIYSAGT 381
Score = 29.9 bits (68), Expect = 1.4
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDFE 76
+T+LPG GIGPE++S K V + AG E
Sbjct: 45 ITLLPGDGIGPEVVSIAKNVLQQAGSLEGVE 75
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB:
2ayq_A 1v53_A 1v5b_A
Length = 390
Score = 142 bits (360), Expect = 5e-39
Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 19/223 (8%)
Query: 141 QGIDIVIVRQNTEGEY----AMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRK 196
+G+D+VIVR+ T G Y + E + V+++ + T R+ + AFE A +K
Sbjct: 147 EGVDLVIVRELTGGLYFGEPSERYEEGEEAAVDTL-LYTREEIERIIRKAFELALT-RKK 204
Query: 197 KVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPN 256
KVT+V KAN+++ S L+ E++ +VAKEYP++E M++DN MQL+ NP+QFDV+V N
Sbjct: 205 KVTSVDKANVLESSR-LWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQFDVIVTEN 263
Query: 257 LYGAITSN---VICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTA--IAGKNIANPIAML 311
++G I S+ +I G +G L S D ++EP G+A IAGK IANP+A +
Sbjct: 264 MFGDILSDEASMITGSLG--MLPSASLSTDGLGLYEPV---HGSAPDIAGKGIANPLATI 318
Query: 312 NASVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTAT 353
++ ML + G + A I+ A+EK + + T D+
Sbjct: 319 LSAAMMLRYSFGLEEEAKAIEKAVEKVL-AEGYRTADIAKPGG 360
Score = 29.5 bits (67), Expect = 1.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDFE 76
+ +LPG GIGPE+M EV + E
Sbjct: 26 IAVLPGDGIGPEVMEAAIEVLKAVAERFGHE 56
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 2e-08
Identities = 48/268 (17%), Positives = 74/268 (27%), Gaps = 96/268 (35%)
Query: 142 GIDIV-IVRQNTE-------GE--------Y-AMLEHESVDGVVESMKIITAANSYRLSK 184
G I+ IV N GE Y AM+ VDG +++ KI N +
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN-EHSTS 1716
Query: 185 YAFE--------------------YA-----KKFGRKKVTTV---H----------KANI 206
Y F A K G H A++
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV 1776
Query: 207 MKISDGLFLEISR--KVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSN 264
M I + + R + P E N M + NP + + +
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGR---SNYGMIAI-NPGR-----VAASFSQEALQ 1827
Query: 265 VICGLIGGAGLISGK-----NYGDHYAVFEPGTRNT-G--TAIAGKNIANPIAMLNASVD 316
+ +G +G NY N AG A L+ +
Sbjct: 1828 YVVERVGKR---TGWLVEIVNY------------NVENQQYVAAGDLRA-----LDTVTN 1867
Query: 317 MLEHLGHMKHASIIKLAIEKTINEDKIH 344
+L + K II+L ++ E + H
Sbjct: 1868 VLNFIKLQK-IDIIELQKSLSLEEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 6e-08
Identities = 63/389 (16%), Positives = 125/389 (32%), Gaps = 122/389 (31%)
Query: 1 MVSRMCS--NFLAASKVYDKQSV-RTMAFVMPKLKEVYTKAKYGGRNAVTMLP--GGGIG 55
+ +R +FL+A+ +M ++K + KY LP
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLD-CRPQDLPREVLTTN 326
Query: 56 PELMSYVKEVFR-YAGVPVDFETVQIDPKSD----SNDDLE-------YAITSIRRNGVA 103
P +S + E R +++ V D + S + LE + S+
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA- 385
Query: 104 IKGNIETGSLDSLW-----------TLKLCR--LILRVIAMMILSVRCRQQGIDIVIVRQ 150
+I T L +W KL + L+ + +S+ I + + +
Sbjct: 386 ---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI----PSIYLEL-KV 437
Query: 151 NTEGEYAMLEHESVDGVVESMKIITAANSYRLSK-----YAFEYAKKFGR--KKVTTVHK 203
E EYA+ H S+ V+ I +S L Y + + G K + +
Sbjct: 438 KLENEYAL--HRSI---VDHYNIPKTFDSDDLIPPYLDQYFYSH---IGHHLKNIEHPER 489
Query: 204 ANIMKISDGLFLE---ISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGA 260
+ ++ +FL+ + +K+ + + I++ T QL
Sbjct: 490 MTLFRM---VFLDFRFLEQKIRHDSTAWNASGSILN-TLQQL------------------ 527
Query: 261 ITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDML-- 318
K Y + I N ++NA +D L
Sbjct: 528 ------------------KFYKPY--------------IC-DNDPKYERLVNAILDFLPK 554
Query: 319 --EHLGHMKHASIIKLAI---EKTINEDK 342
E+L K+ ++++A+ ++ I E+
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEA 583
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline,
thermostable, oxidoreductase; 2.24A {Thermotoga
maritima}
Length = 399
Score = 42.5 bits (99), Expect = 2e-04
Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 21/229 (9%)
Query: 140 QQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVT 199
+ ++ +V +N E + ++ +GVV +M + + ++ YA +
Sbjct: 147 EGPAEVELVVRNKENKTLLVHKFEGNGVVMAMHNLEK-SIRSFAQSCINYAISEK-VDIW 204
Query: 200 TVHKANIMKISDGLFLEISRKVAKEYPE------IEHNDMIIDNTCMQLVSNPKQFDVMV 253
K I K+ F +I ++ + E + + M+ID+ Q++ + +
Sbjct: 205 FATKDTISKVYHAYFKDIFQEEVDKRKEELEKAGVNYRYMLIDDAAAQILRSEGGM-LWA 263
Query: 254 MPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTA------IAGKNIANP 307
N G I S++I G GL++ T K NP
Sbjct: 264 CMNYEGDIMSDMIASGFGSLGLMTSVLVSPDGVYEFEAAHGTVRRHYYRYLKGEKTSTNP 323
Query: 308 IAMLNASVDMLEHLGHM-KHASIIKLA--IEK-TIN--EDKIHTPDLGG 350
A + A + G + + + A +EK IN E + T DL
Sbjct: 324 TASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESGVITKDLQP 372
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation,
thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A
{Desulfotalea psychrophila} PDB: 2uxr_A*
Length = 402
Score = 41.3 bits (96), Expect = 4e-04
Identities = 39/235 (16%), Positives = 72/235 (30%), Gaps = 24/235 (10%)
Query: 140 QQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYR-LSKYAFEYAKKFGRKKV 198
+ G + IV + G+ VD I S ++ FEY+
Sbjct: 146 EAGGKLEIVVTDKNGKETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQK-IDC 204
Query: 199 TTVHKANIMKISDGLFLEISRKVAKEY--PEIEHNDM-----IIDNTCMQLVSNPKQFDV 251
K I K D F I ++ + + + +ID+ +++ +
Sbjct: 205 WFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLIDDVVARMMKTEGGM-L 263
Query: 252 MVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPG------TRNTGTAIAGKNIA 305
N G + S+++ G + Y FE R+ + G+ +
Sbjct: 264 WACKNYDGDVMSDMVASAFGSLAM-MSSVLVSPYGYFEYEAAHGTVQRHYYQHLKGERTS 322
Query: 306 -NPIAMLNASVDMLEHLGHM-KHASIIKLA--IEKTI---NEDKIHTPDLGGTAT 353
NP+A++ A L G + + +E E T DL
Sbjct: 323 TNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESGYMTGDLARICE 377
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase;
HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A*
2qfx_A* 2qfv_A*
Length = 427
Score = 37.1 bits (85), Expect = 0.008
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 23/192 (11%)
Query: 180 YRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVA-KEYPE------IEHND 232
+ +F+ A + K I+K DG F +I ++V +Y I +
Sbjct: 206 EGFAHSSFKLAIDKK-LNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQLGIHYEH 264
Query: 233 MIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGT 292
+ID+ Q++ + F +M + N G + S+++ G GL++ FE
Sbjct: 265 RLIDDMVAQMIKSKGGF-IMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEA 323
Query: 293 RNTGTA-------IAGKNIANPIAMLNASVDMLEHLGHM-------KHASIIKLAIEKTI 338
+ + N IA + A L G + K A+I++ A T+
Sbjct: 324 AHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTV 383
Query: 339 NEDKIHTPDLGG 350
+D I T DL
Sbjct: 384 QQDGIMTKDLAL 395
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate
biosynthesis, structural GENO PSI-2, protein structure
initiative; 2.30A {Salmonella typhimurium}
Length = 330
Score = 31.4 bits (72), Expect = 0.48
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 296 GTA--IAGKNIANPIAMLNA 313
GTA IA A +M +
Sbjct: 303 GTAFDIAWTGKAKSESMAVS 322
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature
adaptation, thermophilic, psychr NADP+ selectivity,
domain movements; 2.35A {Clostridium thermocellum} PDB:
4aou_A
Length = 402
Score = 30.9 bits (69), Expect = 0.77
Identities = 31/191 (16%), Positives = 72/191 (37%), Gaps = 21/191 (10%)
Query: 182 LSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPE-------IEHNDMI 234
++ F YA + + K I K D F +I +++ + + +++ +
Sbjct: 190 FARACFNYALDMN-QDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAKNLQYFYTL 248
Query: 235 IDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIG-----GAGLISGKNYGDHYAVFE 289
ID+ +++ + V N G + S+++ G + L+S + A
Sbjct: 249 IDDAVARIIRSEGGM-VWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGKYEFEAAHG 307
Query: 290 PGTRNTGTAIAGKNIA-NPIAMLNASVDMLEHLGHMKHASIIKL---AIEKTINE---DK 342
TR+ + G+ + N +A + A L+ G + + +E+ + +
Sbjct: 308 TVTRHYYKHLKGEETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLEQASVQTIENG 367
Query: 343 IHTPDLGGTAT 353
+ T DL +
Sbjct: 368 VMTKDLASLSE 378
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.95
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 328 SIIKLAIEKTINEDKIHTPDLGGTATSID 356
++ KL + ++ K++ D A +I
Sbjct: 21 ALKKL--QASL---KLYADD-SAPALAIK 43
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE
dehydrogenase, metal-binding, NAD, NADP, oxidoreductase,
PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB:
1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Length = 334
Score = 30.2 bits (69), Expect = 1.1
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 296 GTA--IAGKNIANPIAMLNA 313
GTA +A A+ + + A
Sbjct: 302 GTALELAATGTADVGSFITA 321
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine
biosynthesis,oxidoreductase, structural GE PSI; 2.01A
{Pseudomonas aeruginosa}
Length = 328
Score = 29.8 bits (68), Expect = 1.5
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 296 GTA--IAGKNIANPIAMLNA 313
GTA +AG + ++ A
Sbjct: 297 GTALDLAGSGRIDSGSLQVA 316
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase,
nucleus, phosphoprotein, PR proteasome, threonine
protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Length = 799
Score = 28.2 bits (62), Expect = 5.1
Identities = 7/82 (8%), Positives = 24/82 (29%)
Query: 147 IVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANI 206
+++ E + +++ + D +V + T + F Y + +
Sbjct: 516 MLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWSNDSFKE 575
Query: 207 MKISDGLFLEISRKVAKEYPEI 228
+ L + + +
Sbjct: 576 KDPNYELVTIPLAALVRRNNGL 597
>1u9c_A APC35852; structural genomics, protein structure initiative,
MCSG, PAR disease, chaperone, cysteine protease, PSI;
1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Length = 224
Score = 27.3 bits (61), Expect = 7.7
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 64 EVFRYAGVPVDFET-----VQIDPKSDSNDDLEYA 93
VF+ G V + V +DP+S + D +A
Sbjct: 36 LVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWA 70
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 27.5 bits (61), Expect = 8.5
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 71 VPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNIETGSLDSLWTL 119
V +D T Q+D ++ I V N G D + L
Sbjct: 185 VELDPTTYQVDL-----GKVKKFINKNTVLLVGSAPNFPHGIADDIEGL 228
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.384
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,727,453
Number of extensions: 360128
Number of successful extensions: 970
Number of sequences better than 10.0: 1
Number of HSP's gapped: 874
Number of HSP's successfully gapped: 57
Length of query: 376
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 281
Effective length of database: 4,049,298
Effective search space: 1137852738
Effective search space used: 1137852738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)