RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy559
(376 letters)
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermotoga maritima [TaxId: 2336]}
Length = 362
Score = 213 bits (542), Expect = 1e-66
Identities = 98/364 (26%), Positives = 159/364 (43%), Gaps = 39/364 (10%)
Query: 37 KAKYGGRNA-VTMLPGGGIGPELMSYVKEVFRYAGVP--VDFETVQIDPKSDSNDDL--- 90
K + + + +LPG GIGPE++ +V FE V D+ D
Sbjct: 1 KIHHHHHHMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEP 60
Query: 91 --EYAITSIRRNGVAIKGNIETGSLDSLWT---------------------LKLCRLILR 127
E G++ D L ++ ++
Sbjct: 61 LPEETKKICLEADAIFLGSVGGPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRS 120
Query: 128 VIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAF 187
++ + L + G+D+V VR+ + G Y + I R+++ AF
Sbjct: 121 LVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTMIYDRKTVERIARTAF 180
Query: 188 EYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPK 247
E AK RKKVT+V KAN++ S L+ ++ +VA+EYP++E + +DN MQL+ P
Sbjct: 181 EIAKN-RRKKVTSVDKANVLY-SSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPS 238
Query: 248 QFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANP 307
QFDV++ N++G I S+ L G GL+ ++GD G + IAGKNIANP
Sbjct: 239 QFDVILTTNMFGDILSDESAALPGSLGLLPSASFGDKNLYEPAG--GSAPDIAGKNIANP 296
Query: 308 IAMLNASVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDLG----GTATSIDVVQNII 362
IA + + MLEH G ++ A I+ A+E I E+ T D+ ++ + I
Sbjct: 297 IAQILSLAMMLEHSFGMVEEARKIERAVELVI-EEGYRTRDIAEDPEKAVSTSQMGDLIC 355
Query: 363 KLVQ 366
K ++
Sbjct: 356 KKLE 359
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus
subtilis [TaxId: 1423]}
Length = 423
Score = 207 bits (528), Expect = 7e-64
Identities = 96/401 (23%), Positives = 162/401 (40%), Gaps = 85/401 (21%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYA-------GVPVDFETVQIDPKS--DSNDDL-EYAIT 95
+ + G G GP++ + +V A + ++ V K+ + + L +
Sbjct: 22 IPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLD 81
Query: 96 SIRRNGVAIKGNIETGSLDSLWTLKLCR-------LILRVIAMM--ILSVRCRQQGIDIV 146
IR +AIKG + T + +L + + LR + + S R + D+V
Sbjct: 82 VIREYFIAIKGPLTTPVGGGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMV 141
Query: 147 IVRQNTEGEYAMLEHESVDGVVESM-----------------------KIITAANSYRLS 183
I R+NTE YA +E+ V+ + K ++ + RL
Sbjct: 142 IFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRLV 201
Query: 184 KYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKV---------------------- 221
+ A +YA + GRK VT VHK NIMK ++G F ++
Sbjct: 202 RAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQ 261
Query: 222 -----------AKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLI 270
A+ +I D I D Q+++ P +FDV+ NL G S+ + +
Sbjct: 262 GKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQV 321
Query: 271 GGAGLISGKNYG--DHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHAS 328
GG G+ G N +A+FE T T AG + NP +++ + V +LEHLG + A
Sbjct: 322 GGIGIAPGANINYETGHAIFEA-THGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNEAAD 380
Query: 329 IIKLAIEKTINEDKIHTPDL------GGTATSIDVVQNIIK 363
++ ++EKTI K+ T D + + +IK
Sbjct: 381 LVIKSMEKTI-ASKVVTYDFARLMDGATEVKCSEFGEELIK 420
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermus thermophilus [TaxId: 274]}
Length = 345
Score = 204 bits (521), Expect = 1e-63
Identities = 92/345 (26%), Positives = 157/345 (45%), Gaps = 32/345 (9%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKS----------------- 84
V +LPG GIGPE+ +V R G+ + +E +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 85 DSNDDLEYAITSIRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRC-----R 139
++ L ++ + +G+ K ETG L + L + L
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 140 QQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVT 199
+G+D++IVR+ T G Y + + + + R+++ AFE A+K RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEVARK-RRKHVV 181
Query: 200 TVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYG 259
+V KAN++++ + + +V + YP++ +D M LV +P +FDV+V N++G
Sbjct: 182 SVDKANVLEVGEFWR-KTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 260 AITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLE 319
I S++ L G GL+ + G VFEP + IAGK IANP A + ++ MLE
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSA-PDIAGKGIANPTAAILSAAMMLE 299
Query: 320 H-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
H G ++ A ++ A+ K + E PDLGG+A + +++
Sbjct: 300 HAFGLVELARKVEDAVAKALLE--TPPPDLGGSAGTEAFTATVLR 342
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Salmonella typhimurium [TaxId: 90371]}
Length = 363
Score = 204 bits (519), Expect = 4e-63
Identities = 91/359 (25%), Positives = 157/359 (43%), Gaps = 39/359 (10%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKS-DSNDDL--EYAITSIR 98
+ +LPG GIGPE+M+ +V + + + + D++ + +
Sbjct: 7 IAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCE 66
Query: 99 RNGVAIKGNIETGSLDSLWT---------------------LKLCRLILRVIAMMILSVR 137
+ + G++ ++L L+ +L + A L
Sbjct: 67 QADAILFGSVGGPKWENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRAD 126
Query: 138 CRQQGIDIVIVRQNTEGEYAMLEHESVDG----VVESMKIITAANSYRLSKYAFEYAKKF 193
G DI+ VR+ T G Y ++ R+++ AFE A+K
Sbjct: 127 IAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESARK- 185
Query: 194 GRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMV 253
R+KVT++ KAN+++ S L+ EI VAK YP++E M IDN MQL+ +P QFDV++
Sbjct: 186 RRRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLL 244
Query: 254 MPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNA 313
NL+G I S+ + G G++ + + + IAGKNIANPIA + +
Sbjct: 245 CSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILS 304
Query: 314 SVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSI---DVVQNIIKLVQTN 368
+L + L A+ I+ AI + + E+ + T DL A ++ ++ I + V
Sbjct: 305 LALLLRYSLDANDAATAIEQAINRAL-EEGVRTGDLARGAAAVSTDEMGDIIARYVAEG 362
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 201 bits (511), Expect = 2e-61
Identities = 93/388 (23%), Positives = 149/388 (38%), Gaps = 72/388 (18%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYA-------GVPVDFETVQIDPKS-----DSNDDLEYA 93
+ + G GIG ++ + +V A + + + KS
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 94 ITSIRRNGVAIKGNIETGSLDSLWTLKLC---RLILRV------IAMMILSVRCRQQGID 144
+ IR VAIKG + T + +L + L L + S + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 145 IVIVRQNTEGEYAMLEHESVDGVVE-----------------------SMKIITAANSYR 181
+VI R+N+E YA +E ++ E +K + + R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 182 LSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY---------------- 225
L + A EYA R VT VHK NIMK ++G F + ++A+E
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 226 ----PEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNY 281
EI D+I D Q++ P ++DV+ NL G S+ + +GG G+ G N
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANI 328
Query: 282 GDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINED 341
GD A+FE T T AG++ NP +++ ++ ML H+G + A +I +E I
Sbjct: 329 GDECALFEA-THGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAI-NA 386
Query: 342 KIHTPDL------GGTATSIDVVQNIIK 363
K T D + II+
Sbjct: 387 KTVTYDFERLMDGAKLLKCSEFGDAIIE 414
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH
{Bacillus coagulans [TaxId: 1398]}
Length = 356
Score = 194 bits (493), Expect = 2e-59
Identities = 98/353 (27%), Positives = 165/353 (46%), Gaps = 39/353 (11%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKS--DSNDDL-EYAITSIR 98
+ +LPG GIGPE+M V + G FE I + ++ L E + R
Sbjct: 5 LAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICR 64
Query: 99 RNGVAIKGNIETGSLDSLWT--------------LKLCRLILRVIAMMILS-----VRCR 139
R+ + G + D + L + V A L R R
Sbjct: 65 RSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRER 124
Query: 140 QQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAAN---SYRLSKYAFEYAKKFGRK 196
+ +D+VIVR+ T G Y E + A R+ + AF+ A+ RK
Sbjct: 125 VENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTREEIERIIEKAFQLAQI-RRK 183
Query: 197 KVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPN 256
K+ +V KAN+++ S ++ EI+ + AK+YP++E + M++D+T MQL++NP QFDV+V N
Sbjct: 184 KLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVTEN 242
Query: 257 LYGAITSNVICGLIGG-AGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASV 315
++G I S+ + G L S D + ++EP + IAG+ ANP+ + ++
Sbjct: 243 MFGDILSDEASVITGSLGMLPSASLRSDRFGMYEP-VHGSAPDIAGQGKANPLGTVLSAA 301
Query: 316 DMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDL----GGTATSIDVVQNIIK 363
ML + G K A+ I+ A++ + +D T DL G ++I++ +I+
Sbjct: 302 LMLRYSFGLEKEAAAIEKAVDDVL-QDGYCTGDLQVANGKVVSTIELTDRLIE 353
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 337
Score = 187 bits (475), Expect = 5e-57
Identities = 87/330 (26%), Positives = 153/330 (46%), Gaps = 27/330 (8%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKS--DSNDDL-EYAITSIRRNGV 102
+ ++ G GIGPE+ + +V V + + + + + L + + +R +
Sbjct: 4 LAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDA 63
Query: 103 AIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVR------------CRQQGIDIVIVRQ 150
+ G I S+ S + L LR +++R GID V+VR+
Sbjct: 64 ILLGAIGDPSVPSGVLERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVRE 123
Query: 151 NTEGEYAMLEHESVDG----VVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANI 206
TEG Y G V + + TA R+ AFE A++ RK +T VHK N+
Sbjct: 124 GTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVADAFERARR-RRKHLTLVHKTNV 182
Query: 207 MKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVI 266
+ + GL+L +V + YP++E +D + ++++P +FDV+V NL+G I +++
Sbjct: 183 LTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLA 242
Query: 267 CGLIGGAGLISGKNYGDHYA---VFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGH 323
+ GG GL + N A +FEP + IAG+ IA+P A + + +L HLG
Sbjct: 243 AAVCGGIGLAASGNIDATRANPSMFEPVHG-SAPDIAGQGIADPTAAIMSVALLLSHLGE 301
Query: 324 MKHASIIKLAIEKTI---NEDKIHTPDLGG 350
A+ + A+E + +++ T D+G
Sbjct: 302 HDAAARVDRAVEAHLATRGSERLATSDVGE 331
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thiobacillus ferrooxidans [TaxId: 920]}
Length = 357
Score = 187 bits (475), Expect = 9e-57
Identities = 80/339 (23%), Positives = 154/339 (45%), Gaps = 35/339 (10%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKS-DSNDDL--EYAITSIR 98
+ + G GIGPE+++ ++V + + + + D++DD ++
Sbjct: 4 IAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAM 63
Query: 99 RNGVAIKGNIETGSLDSLWTLKLCR-LILRVIAMMILSVRCR------------------ 139
I G + D+ K +LR+ + L R
Sbjct: 64 AADAVILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPEL 123
Query: 140 QQGIDIVIVRQNTE----GEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGR 195
+ +DI++VR+ T G+ LE + + R++ AF A + R
Sbjct: 124 VRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAF-RAAQGRR 182
Query: 196 KKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMP 255
K++ +V KAN+++ + L+ E+ +VA++YP++ + M +DN MQL+ P QFDV++
Sbjct: 183 KQLCSVDKANVLETTR-LWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTG 241
Query: 256 NLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASV 315
N++G I S+ L G G++ + G+ A++EP + IAG++ ANP+A + +
Sbjct: 242 NMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPIHG-SAPDIAGQDKANPLATILSVA 300
Query: 316 DMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDLGGTAT 353
ML H L A ++ A+++ + + + T D+ T
Sbjct: 301 MMLRHSLNAEPWAQRVEAAVQRVL-DQGLRTADIAAPGT 338
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 336
Score = 179 bits (455), Expect = 5e-54
Identities = 110/334 (32%), Positives = 168/334 (50%), Gaps = 20/334 (5%)
Query: 46 VTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKS-DSNDDL--EYAITSIR 98
V ++ G GIGPE++S K + +P+++ V+ ++ + + ++ I
Sbjct: 4 VALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIID 63
Query: 99 RNGVAIKGNIETGSLDSLWTLK--LCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEY 156
+ + +KG + + D + L+ A I + + +DI+IVR+NTE Y
Sbjct: 64 KADIILKGPVGESAADVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLY 123
Query: 157 AMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLE 216
EH DGV MKIIT S R++K +A RKKVT VHKAN+M+I+DGLF E
Sbjct: 124 KGFEHIVSDGVAVGMKIITRFASERIAKVGLNFAL-RRRKKVTCVHKANVMRITDGLFAE 182
Query: 217 ISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLI 276
R V ++E+++M +D LV NP+ FDV+V N+YG I S+ + G G+
Sbjct: 183 ACRSV--LKGKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIA 240
Query: 277 SGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKH-------ASI 329
N GD A+FEP IAGKNI NP A L + M E + + + +
Sbjct: 241 PSANIGDKKALFEPVHG-AAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRA 299
Query: 330 IKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
++ AI E K TPD+GG AT+ D++ I
Sbjct: 300 LENAIYLVYKERKALTPDVGGNATTDDLINEIYN 333
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 413
Score = 175 bits (445), Expect = 9e-52
Identities = 59/391 (15%), Positives = 112/391 (28%), Gaps = 67/391 (17%)
Query: 44 NAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKS-DSNDD--LEYAITSIRRN 100
V + G + + ++KE V V + + + D +D + + ++
Sbjct: 9 KPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKY 68
Query: 101 GVAIKGNIETGSLDSLWTLKL----------------CRLILRVIAMMILSVRCRQQGID 144
VA+K T + KL + I +
Sbjct: 69 SVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKP 128
Query: 145 IVIVRQNTEGEYAMLEHESVDGVVESMKIITA-------------------------ANS 179
I I R +Y + + S
Sbjct: 129 ITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDES 188
Query: 180 YRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPE-------IEHND 232
++ + + K I+K DG F +I +++ +++ + I +
Sbjct: 189 ISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEH 248
Query: 233 MIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPG- 291
+ID+ Q V V N G + S+++ G GL++ E
Sbjct: 249 RLIDDMVAQ-VLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEA 307
Query: 292 ------TRNTGTAIAGKNIANPIAMLNASVDMLEHLGHM-------KHASIIKLAIEKTI 338
NPIA + A LEH G + + A ++ +T+
Sbjct: 308 AHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETV 367
Query: 339 NEDKIHTPDLGGTATSIDVVQNIIKLVQTND 369
E T DL G + V+ + T+D
Sbjct: 368 -ESGAMTKDLAGCIHGLSNVKLNEHFLNTSD 397
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 414
Score = 170 bits (432), Expect = 7e-50
Identities = 53/387 (13%), Positives = 112/387 (28%), Gaps = 68/387 (17%)
Query: 44 NAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKS-DSNDD--LEYAITSIRRN 100
+V + G + + +KE + V +D + + ++ D+ +D + A +I+++
Sbjct: 8 GSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKH 67
Query: 101 GVAIKGNIETGSLDSLWTLKLCR----------------LILRVIAMMILSVRCRQQGID 144
V +K T + KL + + I +
Sbjct: 68 NVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKP 127
Query: 145 IVIVRQNTEGEYAMLEHESVDGVVESMKIITAANS------------------------- 179
I+I R +Y + + + +
Sbjct: 128 IIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDK 187
Query: 180 -YRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEY-------PEIEHN 231
++ + K I+K DG F +I +++ + +I +
Sbjct: 188 SIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYE 247
Query: 232 DMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVF--- 288
+ID+ Q + + + N G + S+ + G G+++
Sbjct: 248 HRLIDDMVAQAMKSE-GGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAE 306
Query: 289 ----EPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHM-------KHASIIKLAIEKT 337
+ NPIA + A L H + A+ ++ +T
Sbjct: 307 AAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIET 366
Query: 338 INEDKIHTPDLGGTATSIDVVQNIIKL 364
I E T DL + VQ L
Sbjct: 367 I-EAGFMTKDLAACIKGLPNVQRSDYL 392
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase
PdxA {Escherichia coli [TaxId: 562]}
Length = 329
Score = 30.6 bits (68), Expect = 0.32
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 296 GTA--IAGKNIANPIAMLNA 313
GTA +AG+ A+ + + A
Sbjct: 298 GTALELAGRGKADVGSFITA 317
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Human (Homo sapiens) [TaxId:
9606]}
Length = 320
Score = 27.2 bits (60), Expect = 3.4
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 132 MILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKII 174
+ + + + D+ + + GE+AML H + G + +
Sbjct: 248 LDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAV 290
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 26.4 bits (57), Expect = 6.8
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 31 LKEVYTKAKYGGRNAVTMLPGGGIGPELMSYVKE 64
+K+ G +L G + + YV E
Sbjct: 292 MKKYIALHNIRGERLAHILSGANVNFHGLRYVSE 325
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 96
Score = 24.7 bits (54), Expect = 7.6
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 6/57 (10%)
Query: 210 SDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVI 266
SDG + R+ A I+ ++ + + + + + S V
Sbjct: 8 SDGHEFIVKREHALTSGTIKA---MLSGPGQ---FAENETNEVNFREIPSHVLSKVC 58
>d1b9la_ d.96.1.3 (A:) 7,8-dihydroneopterin triphosphate epimerase
{Escherichia coli [TaxId: 562]}
Length = 119
Score = 25.3 bits (55), Expect = 8.3
Identities = 7/84 (8%), Positives = 25/84 (29%), Gaps = 6/84 (7%)
Query: 143 IDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRL-----SKYAFEYAKKFGRKK 197
+ I + + + V +++ N + L +
Sbjct: 35 VTIHYPADKARTSEDINDALNYRTVTKNIIQHVENNRFSLLEKLTQDVLDIAREHHWVTY 94
Query: 198 VT-TVHKANIMKISDGLFLEISRK 220
+ K + ++ +D + + +S +
Sbjct: 95 AEVEIDKLHALRYADSVSMTLSWQ 118
>d2cbia3 d.92.2.3 (A:41-178) Hyaluronidase N-terminal domain
{Clostridium perfringens [TaxId: 1502]}
Length = 138
Score = 25.1 bits (54), Expect = 8.9
Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 21/115 (18%)
Query: 27 VMPKLKEV-YTKAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFE------TVQ 79
+ P + + + +++ ++ ++ ++E + ++ E T+
Sbjct: 6 LNPTPENLEVVGDGFKITSSINLVGEEEADENAVNALREFLTANNIEINSENDPNSTTLI 65
Query: 80 IDPKSDSNDDLEYAIT--------------SIRRNGVAIKGNIETGSLDSLWTLK 120
I D +L+ A+ +AI+G G+ + T K
Sbjct: 66 IGEVDDDIPELDEALNGTTAENLKEEGYALVSNDGKIAIEGKDGDGTFYGVQTFK 120
>d1xqoa_ a.96.1.6 (A:) 8-oxoguanine DNA glycosylase, AgoG
{Pyrobaculum aerophilum [TaxId: 13773]}
Length = 253
Score = 25.6 bits (56), Expect = 8.9
Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 139 RQQGIDIVIVRQNTEGEYAMLE---HESVDGVVESMKIITAANSYRLS----KYAFEYAK 191
R+ GI+ V+ + + +Y + + V + ++ A SYRL+ ++ + K
Sbjct: 14 RRLGIEEVLKLERRDPQYRAVCNVVKRHGETVGSRLAMLNALISYRLTGKGEEHWEYFGK 73
Query: 192 KFGRKKVTTVHKANIMKISDGLFLEISR 219
F + +V + + + ++E S
Sbjct: 74 YFSQLEVIDLCRDFLK------YIETSP 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.384
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,354,341
Number of extensions: 63671
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 23
Length of query: 376
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,213,086
Effective search space: 350581854
Effective search space used: 350581854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)