BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5591
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q18515|C1GLT_CAEEL Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Caenorhabditis elegans GN=C38H2.2 PE=2 SV=2
Length = 389
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 76/98 (77%)
Query: 101 GEDVIAKELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKLGTINL 160
GE +IA E+ KVRV CW++T NH+K+A+HVKATW KRCN +FMSS D +L INL
Sbjct: 92 GESLIADEVAKKVRVFCWILTGKQNHDKRAKHVKATWAKRCNKYVFMSSEEDAELPAINL 151
Query: 161 NISEGRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
N+SEGRD+LW KTK AF+Y+Y+H+ YDW +KADDDT
Sbjct: 152 NVSEGRDYLWAKTKGAFKYIYDHHLNDYDWFLKADDDT 189
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 13 QCYVVVENLRYMLIHYEKTTPIYFGCKFKPFVKQGYMSGGAGIQVFHYRALCGRENSLLV 72
YVV+ENLR+ML+ + PI+FGCKFKPF + GY SGGAG + RE +L
Sbjct: 188 DTYVVMENLRFMLLAHSPDEPIHFGCKFKPFTQGGYHSGGAGY-------VLSRE-ALKK 239
Query: 73 DKAIGLLDNNLCKQ 86
+ L D +LC Q
Sbjct: 240 FIEVALPDKSLCSQ 253
>sp|Q7K237|C1GLT_DROME Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Drosophila melanogaster GN=C1GalTA PE=2 SV=1
Length = 388
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 74/95 (77%)
Query: 104 VIAKELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKLGTINLNIS 163
IA+ L +VRVLCW+MTNP NH KKARHVK TWGKRCN L+FMSS+ D +L + L +
Sbjct: 90 TIAERLYSEVRVLCWIMTNPSNHQKKARHVKRTWGKRCNKLIFMSSAKDDELDAVALPVG 149
Query: 164 EGRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
EGR++LWGKTK A++Y+YEH+ DW +KADDDT
Sbjct: 150 EGRNNLWGKTKEAYKYIYEHHINDADWFLKADDDT 184
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 15 YVVVENLRYMLIHYEKTTPIYFGCKFKPFVKQGYMSGGAG------------IQVFHYRA 62
Y +VEN+RYML Y TP+YFGCKFKP+VKQGYMSGGAG ++
Sbjct: 185 YTIVENMRYMLYPYSPETPVYFGCKFKPYVKQGYMSGGAGYVLSREAVRRFVVEALPNPK 244
Query: 63 LCGRENSLLVDKAIG 77
LC +NS D IG
Sbjct: 245 LCKSDNSGAEDVEIG 259
>sp|Q5F3G7|C1GLT_CHICK Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Gallus gallus GN=C1GALT1 PE=2 SV=1
Length = 366
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 65/94 (69%)
Query: 105 IAKELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKLGTINLNISE 164
IA L KV++LCWVMT P N KKARHVKATW +RCN +LFMSS + T+ L E
Sbjct: 80 IADGLYEKVKILCWVMTGPQNLEKKARHVKATWAQRCNKILFMSSEENKDFPTVGLETKE 139
Query: 165 GRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
GRD L+ KT AF+YVY+HY DW MKADDDT
Sbjct: 140 GRDQLYWKTIKAFQYVYDHYFDDADWFMKADDDT 173
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 33/41 (80%)
Query: 14 CYVVVENLRYMLIHYEKTTPIYFGCKFKPFVKQGYMSGGAG 54
YV+++NLR++L Y PIYFG +FKP+VKQGYMSGGAG
Sbjct: 173 TYVILDNLRWLLSKYSPEQPIYFGRRFKPYVKQGYMSGGAG 213
>sp|Q7SYI5|C1GTB_DANRE Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B
OS=Danio rerio GN=c1galt1b PE=2 SV=1
Length = 374
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 69/99 (69%), Gaps = 1/99 (1%)
Query: 101 GED-VIAKELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKLGTIN 159
GED +A L +VR+LCWVMT PDN KKARHVKATW + CNI++F+SS +P T+
Sbjct: 74 GEDGALADSLYKRVRILCWVMTGPDNLEKKARHVKATWSRHCNIVVFISSVDNPDFPTVG 133
Query: 160 LNISEGRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
LN EGRD L+ KT AF YV E + + DW +KADDDT
Sbjct: 134 LNTKEGRDQLYWKTIRAFHYVMEKHSDEADWFLKADDDT 172
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 33/40 (82%)
Query: 15 YVVVENLRYMLIHYEKTTPIYFGCKFKPFVKQGYMSGGAG 54
YV+V+NLR++L + P+YFG +FKP+VKQGYMSGGAG
Sbjct: 173 YVIVDNLRWILARHSPEDPVYFGRRFKPYVKQGYMSGGAG 212
>sp|Q9NS00|C1GLT_HUMAN Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Homo sapiens GN=C1GALT1 PE=1 SV=1
Length = 363
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 105 IAKELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKLGTINLNISE 164
IA+ L KVR+LCWVMT P N KKA+HVKATW +RCN +LFMSS + + L E
Sbjct: 79 IAENLYQKVRILCWVMTGPQNLEKKAKHVKATWAQRCNKVLFMSSEENKDFPAVGLKTKE 138
Query: 165 GRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
GRD L+ KT AF+YV+EHY DW +KADDDT
Sbjct: 139 GRDQLYWKTIKAFQYVHEHYLEDADWFLKADDDT 172
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 15 YVVVENLRYMLIHYEKTTPIYFGCKFKPFVKQGYMSGGAGIQVFHYRALCGRENSLLVDK 74
YV+++NLR++L Y+ PIYFG +FKP+VKQGYMSGGAG V AL ++ DK
Sbjct: 173 YVILDNLRWLLSKYDPEEPIYFGRRFKPYVKQGYMSGGAGY-VLSKEALKRFVDAFKTDK 231
Query: 75 AIGLLDNNLCKQIYLSILMEPLVEFPGE--DVIAKELKH 111
++ + + L ME + G+ D I KE H
Sbjct: 232 CT---HSSSIEDLALGRCMEIMNVEAGDSRDTIGKETFH 267
>sp|Q9JJ05|C1GLT_RAT Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Rattus norvegicus GN=C1galt1 PE=1 SV=1
Length = 363
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 67/94 (71%)
Query: 105 IAKELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKLGTINLNISE 164
+A+ L KV+VLCWVMT+P N KKA+HVKATW +RCN +LFMSS + T+ L E
Sbjct: 79 VAENLYQKVKVLCWVMTSPQNLEKKAKHVKATWAQRCNKVLFMSSEENKDFPTVGLETKE 138
Query: 165 GRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
GR+ L+ KT AF+YV++HY DW MKADDDT
Sbjct: 139 GREQLYWKTIKAFQYVHDHYLEDADWFMKADDDT 172
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 15 YVVVENLRYMLIHYEKTTPIYFGCKFKPFVKQGYMSGGAG 54
YV+++NLR++L Y PIYFG +FKP+VKQGYMSGGAG
Sbjct: 173 YVILDNLRWLLSKYNPEQPIYFGRRFKPYVKQGYMSGGAG 212
>sp|Q9JJ06|C1GLT_MOUSE Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Mus musculus GN=C1galt1 PE=1 SV=1
Length = 363
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 67/94 (71%)
Query: 105 IAKELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKLGTINLNISE 164
+A+ L KV++LCWVMT+P N KKA+HVKATW +RCN +LFMSS + T+ L E
Sbjct: 79 VAENLYQKVKILCWVMTSPQNLEKKAKHVKATWAQRCNKVLFMSSEENQDFPTVGLKTKE 138
Query: 165 GRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
GR+ L+ KT AF+YV++HY DW MKADDDT
Sbjct: 139 GREQLYWKTIKAFQYVHDHYLEDADWFMKADDDT 172
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 33/40 (82%)
Query: 15 YVVVENLRYMLIHYEKTTPIYFGCKFKPFVKQGYMSGGAG 54
YV+V+NLR++L Y PIYFG +FKP+VKQGYMSGGAG
Sbjct: 173 YVIVDNLRWLLSKYNPEQPIYFGRRFKPYVKQGYMSGGAG 212
>sp|Q0VC84|C1GLT_BOVIN Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Bos taurus GN=C1GALT1 PE=2 SV=1
Length = 368
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 65/94 (69%)
Query: 105 IAKELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKLGTINLNISE 164
IA +L KV++LCWVMT P N KKA+HVKATW +RCN +LFMSS + + L E
Sbjct: 79 IADKLYQKVKILCWVMTGPQNLEKKAKHVKATWAQRCNKVLFMSSEENKDFPAVGLKTRE 138
Query: 165 GRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
GRD L+ KT AF+YV++HY DW MKADDDT
Sbjct: 139 GRDQLYWKTIKAFQYVHDHYLEDADWFMKADDDT 172
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 15 YVVVENLRYMLIHYEKTTPIYFGCKFKPFVKQGYMSGGAG 54
YV+++NLR++L Y PIYFG +FKP+VKQGYMSGGAG
Sbjct: 173 YVILDNLRWLLSKYNPEEPIYFGRRFKPYVKQGYMSGGAG 212
>sp|Q08BL3|C1GTA_DANRE Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A
OS=Danio rerio GN=c1galt1a PE=2 SV=1
Length = 408
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 100 PGEDV-IAKELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKLGTI 158
PGED IA EL KVR+LCWVMT P N KA+HVK TW + CN++LFMSS D T+
Sbjct: 78 PGEDGHIADELFKKVRILCWVMTGPSNLQSKAQHVKNTWSRHCNVVLFMSSEEDRSFPTV 137
Query: 159 NLNISEGRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
L EGRD L+ KT AF Y +++ + DW +KADDDT
Sbjct: 138 GLGTGEGRDQLYWKTIRAFHYALKNHGHEADWFLKADDDT 177
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 15 YVVVENLRYMLIHYEKTTPIYFGCKFKPFVKQGYMSGGAG 54
+VVV+NLR++L +Y PIYFG +FKP+ KQGYMSGGAG
Sbjct: 178 FVVVDNLRWILSNYTPEQPIYFGKRFKPYTKQGYMSGGAG 217
>sp|Q6GNL1|C1GLT_XENLA Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Xenopus laevis GN=c1galt1 PE=2 SV=1
Length = 360
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 63/100 (63%)
Query: 99 FPGEDVIAKELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKLGTI 158
P ++ +++EL KVRVLCW+MT P N KA HVK +W + CN+ LFMSS D I
Sbjct: 61 LPEDNSVSEELSKKVRVLCWIMTGPTNLKTKAIHVKNSWTRHCNVALFMSSITDEDFPAI 120
Query: 159 NLNISEGRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
L EGRD L+ KT AF Y +++Y + +W KADDDT
Sbjct: 121 GLGTGEGRDKLYWKTIRAFHYAHKYYLNETEWFFKADDDT 160
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 15 YVVVENLRYMLIHYEKTTPIYFGCKFKPFVKQGYMSGGAG 54
YV+++NLR+ML +Y PIYFG +FKP++KQGYMSGGAG
Sbjct: 161 YVIMDNLRWMLSNYTADQPIYFGKRFKPYIKQGYMSGGAG 200
>sp|Q9JMG2|C1GLC_MOUSE C1GALT1-specific chaperone 1 OS=Mus musculus GN=C1galt1c1 PE=2 SV=1
Length = 316
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 97 VEFPGEDVIAK-------ELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSS 149
++ P +D I+K EL RV C V+ P + + A VK TW K C+ F SS
Sbjct: 42 LQAPNKDDISKISEAERMELSKSFRVYCIVLVKPKDVSLWAA-VKETWTKHCDKAEFFSS 100
Query: 150 SVDPKLGTINLNISEGRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
+IN++ ++ +W + A++Y Y+ YR QY+W A T
Sbjct: 101 ENVKVFESINMDTND----MWLMMRKAYKYAYDQYRDQYNWFFLARPTT 145
>sp|Q96EU7|C1GLC_HUMAN C1GALT1-specific chaperone 1 OS=Homo sapiens GN=C1GALT1C1 PE=1 SV=1
Length = 318
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 108 ELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKLGTINLNISEGRD 167
EL RV C ++ P + + A VK TW K C+ F SS +IN++ ++
Sbjct: 62 ELSKSFRVYCIILVKPKDVSLWAA-VKETWTKHCDKAEFFSSENVKVFESINMDTND--- 117
Query: 168 HLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
+W + A++Y ++ YR QY+W A T
Sbjct: 118 -MWLMMRKAYKYAFDKYRDQYNWFFLARPTT 147
>sp|Q499P3|C1GLC_RAT C1GALT1-specific chaperone 1 OS=Rattus norvegicus GN=C1galt1c1 PE=1
SV=1
Length = 316
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 97 VEFPGEDVIAK-------ELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSS 149
++ P +D I K EL +V C V+ P + + A VK TW K C+ F SS
Sbjct: 42 LQAPNKDDILKISETERMELSKSFQVYCIVLVKPKDVSLWAA-VKETWTKHCDKAEFFSS 100
Query: 150 SVDPKLGTINLNISEGRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
+IN++ ++ +W + A++Y Y+ Y+ QY+W A T
Sbjct: 101 ENVKVFESINMDTND----MWLMMRKAYKYAYDKYKDQYNWFFLARPTT 145
>sp|Q3SX46|C1GLC_BOVIN C1GALT1-specific chaperone 1 OS=Bos taurus GN=C1GALT1C1 PE=2 SV=1
Length = 318
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 108 ELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKLGTINLNISEGRD 167
EL RV C ++ P + + A VK TW C+ + F SS +IN+ ++
Sbjct: 62 ELSKSFRVYCILLVRPKDVSLWAA-VKETWTNHCDKVDFFSSENVKVFESINMETND--- 117
Query: 168 HLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
+W + A++Y ++ YR QY+W A T
Sbjct: 118 -MWLMMRKAYKYAFDKYRDQYNWFFLARPTT 147
>sp|Q8BHT6|B3GLT_MOUSE Beta-1,3-glucosyltransferase OS=Mus musculus GN=B3galtl PE=2 SV=3
Length = 489
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 13/119 (10%)
Query: 93 MEPLVEFPGEDVIAKELK--HKVRVLCWVMTNPDN-----------HNKKARHVKATWGK 139
+ P+ EF EDV + + H LC V + H + VK TW
Sbjct: 225 LTPVPEFCTEDVDPRCVTTFHSFLPLCGVPVKKEEIFVAVKTCKKFHADRIPIVKKTWAA 284
Query: 140 RCNILLFMSSSVDPKLGTINLNISEGRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
+ +++ + S + + T++L I GKT A H + W++ DDDT
Sbjct: 285 QASLIEYYSDYAETAIPTVDLGIPNTDRGHCGKTFAILEKFLNHSHNKISWLVIVDDDT 343
>sp|Q6ZQ11|CHSS1_MOUSE Chondroitin sulfate synthase 1 OS=Mus musculus GN=Chsy1 PE=2 SV=2
Length = 800
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 115 VLCWVMTNPDNHNKKARHVKATWGKRC--NILLFMSSSVDPKLGTINLNISEGRDHLWGK 172
+ VMT +A TW K + F S D + I + G D +
Sbjct: 86 LFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVEFFSSEGSDTSI-PIPVVPLRGVDDSYPP 144
Query: 173 TKAAF---RYVYEHYRGQYDWVMKADDD 197
K +F +Y+++HY +Y+W M+ADDD
Sbjct: 145 QKKSFMMLKYMHDHYLDKYEWFMRADDD 172
>sp|Q86X52|CHSS1_HUMAN Chondroitin sulfate synthase 1 OS=Homo sapiens GN=CHSY1 PE=1 SV=3
Length = 802
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 115 VLCWVMTNPDNHNKKARHVKATWGKRC--NILLFMSSSVDPKLGTINLNISEGRDHLWGK 172
+ VMT +A TW K + F S D + I + G D +
Sbjct: 87 LFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVQFFSSEGSDTSV-PIPVVPLRGVDDSYPP 145
Query: 173 TKAAF---RYVYEHYRGQYDWVMKADDD 197
K +F +Y+++HY +Y+W M+ADDD
Sbjct: 146 QKKSFMMLKYMHDHYLDKYEWFMRADDD 173
>sp|Q5DTK1|CHSS3_MOUSE Chondroitin sulfate synthase 3 OS=Mus musculus GN=Chsy3 PE=1 SV=3
Length = 884
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 119 VMTNPDNHNKKARHVKATWGKRC-NILLFMSSSVDPKLG------TINLNISEGRDHLWG 171
VMT +A + TW + + F SS P + + G D +
Sbjct: 177 VMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQSPSAALGQPPPPLPVIALPGVDDSYP 236
Query: 172 KTKAAF---RYVYEHYRGQYDWVMKADDD 197
K +F +Y+++HY +Y+W M+ADDD
Sbjct: 237 PQKKSFMMIKYMHDHYLDKYEWFMRADDD 265
>sp|Q3A558|LOLD_PELCD Lipoprotein-releasing system ATP-binding protein LolD OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=lolD PE=3
SV=1
Length = 227
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 45 KQGYMSGGAGIQVFHYRALCGRENSLLVDKAIGLLDNNLCKQIY 88
K G +SGG +V RAL G L D+ G LD+N + IY
Sbjct: 144 KPGELSGGEQQRVAIARALVGSPRVLFADEPTGNLDSNTSESIY 187
>sp|Q1AS06|POTA_RUBXD Spermidine/putrescine import ATP-binding protein PotA
OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC
16129) GN=potA PE=3 SV=1
Length = 377
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 45 KQGYMSGGAGIQVFHYRALCGRENSLLVDKAIGLLDNNLCKQIYLSI 91
K +SGG +V RAL R LL+D+ +G LD L KQ+ L +
Sbjct: 148 KPSRLSGGQQQRVALARALVNRPKVLLLDEPLGALDLKLRKQMQLEL 194
>sp|Q70JA7|CHSS3_HUMAN Chondroitin sulfate synthase 3 OS=Homo sapiens GN=CHSY3 PE=2 SV=3
Length = 882
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 165 GRDHLWGKTKAAF---RYVYEHYRGQYDWVMKADDD 197
G D + K +F +Y+++HY +Y+W M+ADDD
Sbjct: 228 GVDDSYPPQKKSFMMIKYMHDHYLDKYEWFMRADDD 263
>sp|Q2RU16|LOLD1_RHORT Lipoprotein-releasing system ATP-binding protein LolD 1
OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
GN=lolD1 PE=3 SV=2
Length = 226
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 45 KQGYMSGGAGIQVFHYRALCGRENSLLVDKAIGLLDNNLCKQIYLSIL 92
+ G +SGG +V RAL R LL D+ G LD N ++++ ++L
Sbjct: 142 RPGQLSGGEQQRVAICRALANRPKLLLADEPTGNLDPNTAERVFQALL 189
>sp|Q6Y288|B3GLT_HUMAN Beta-1,3-glucosyltransferase OS=Homo sapiens GN=B3GALTL PE=1 SV=2
Length = 498
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%)
Query: 112 KVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKLGTINLNISEGRDHLWG 171
K + V T H + VK TW + +++ + S + + T++L I G
Sbjct: 266 KKDIFVAVKTCKKFHGDRIPIVKQTWESQASLIEYYSDYTENSIPTVDLGIPNTDRGHCG 325
Query: 172 KTKAAFRYVYEHYRGQYDWVMKADDDT 198
KT A + + W++ DDDT
Sbjct: 326 KTFAILERFLNRSQDKTAWLVIVDDDT 352
>sp|Q4QLF8|MURG_HAEI8 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Haemophilus influenzae (strain 86-028NP)
GN=murG PE=3 SV=1
Length = 351
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 47 GYMSGGAGIQVFHYRALCGRENSLLVDKAIGLLDNNLCKQIYLSILMEPLVEFPGEDVIA 106
GY+SG AG+ LCG L AI L N L +I +L FP +V+
Sbjct: 102 GYVSGPAGVAA----KLCGVPIILHEQNAIAGLTNKLLGKIATCVLQAFPTAFPHAEVVG 157
Query: 107 KELKHKVRVLCWVMTNPD 124
+ VR + M NPD
Sbjct: 158 ----NPVREDLFEMPNPD 171
>sp|P45065|MURG_HAEIN UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=murG PE=3 SV=1
Length = 351
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 47 GYMSGGAGIQVFHYRALCGRENSLLVDKAIGLLDNNLCKQIYLSILMEPLVEFPGEDVIA 106
GY+SG AG+ LCG L AI L N L +I +L FP +V+
Sbjct: 102 GYVSGPAGVAA----KLCGVPIILHEQNAIAGLTNKLLGKIATCVLQAFPTAFPHAEVVG 157
Query: 107 KELKHKVRVLCWVMTNPD 124
+ VR + M NPD
Sbjct: 158 ----NPVREDLFEMPNPD 171
>sp|A5UIR2|MURG_HAEIG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Haemophilus influenzae (strain PittGG)
GN=murG PE=3 SV=1
Length = 351
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 47 GYMSGGAGIQVFHYRALCGRENSLLVDKAIGLLDNNLCKQIYLSILMEPLVEFPGEDVIA 106
GY+SG AG+ LCG L AI L N L +I +L FP +V+
Sbjct: 102 GYVSGPAGVAA----KLCGVPIILHEQNAIAGLTNKLLGKIATCVLQAFPTAFPHAEVVG 157
Query: 107 KELKHKVRVLCWVMTNPD 124
+ VR + M NPD
Sbjct: 158 ----NPVREDLFEMPNPD 171
>sp|Q604C1|LOLD_METCA Lipoprotein-releasing system ATP-binding protein LolD
OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB
11132 / Bath) GN=lolD PE=3 SV=1
Length = 224
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 45 KQGYMSGGAGIQVFHYRALCGRENSLLVDKAIGLLDNNLCKQIYLSILMEPLVEF 99
K G +SGG + RAL R +L D+ G LD+ +Q+Y +++E EF
Sbjct: 142 KPGELSGGERQRAAIARALVTRPKCVLADEPTGNLDSKTAEQVY-QLMLELNQEF 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,792,259
Number of Sequences: 539616
Number of extensions: 3082244
Number of successful extensions: 6289
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6244
Number of HSP's gapped (non-prelim): 45
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)