Query psy5591
Match_columns 198
No_of_seqs 205 out of 575
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 21:28:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2246|consensus 99.9 8.9E-24 1.9E-28 188.5 6.9 94 105-198 83-179 (364)
2 PF02434 Fringe: Fringe-like; 99.7 1.8E-18 3.9E-23 147.6 0.7 88 111-198 4-97 (252)
3 KOG2246|consensus 99.7 4.2E-18 9E-23 152.2 2.5 106 4-120 167-282 (364)
4 PF02434 Fringe: Fringe-like; 99.5 9.7E-15 2.1E-19 124.7 0.8 56 4-59 85-157 (252)
5 PLN03153 hypothetical protein; 99.3 7.8E-13 1.7E-17 121.7 4.0 57 3-59 208-271 (537)
6 KOG3708|consensus 98.8 1.4E-09 3.1E-14 99.8 2.3 88 105-198 18-108 (681)
7 PLN03193 beta-1,3-galactosyltr 98.6 1.4E-07 3.1E-12 85.3 8.8 85 111-198 137-247 (408)
8 PLN03153 hypothetical protein; 98.2 6.2E-06 1.4E-10 76.6 8.7 87 111-198 120-221 (537)
9 PLN03133 beta-1,3-galactosyltr 98.2 5.7E-06 1.2E-10 78.9 8.3 84 112-198 384-486 (636)
10 PF01762 Galactosyl_T: Galacto 98.2 4.5E-06 9.8E-11 68.1 6.4 69 129-198 2-91 (195)
11 KOG2288|consensus 98.0 2.3E-05 5E-10 67.0 6.9 85 111-198 9-119 (274)
12 KOG2287|consensus 97.9 3.8E-05 8.3E-10 68.7 8.3 85 112-198 94-198 (349)
13 PLN03193 beta-1,3-galactosyltr 96.6 0.0027 5.8E-08 57.9 4.8 36 5-40 236-273 (408)
14 KOG2287|consensus 96.2 0.0065 1.4E-07 54.4 4.4 38 4-41 186-226 (349)
15 PF01762 Galactosyl_T: Galacto 96.0 0.0078 1.7E-07 48.9 4.0 55 4-59 79-157 (195)
16 PLN03133 beta-1,3-galactosyltr 96.0 0.0098 2.1E-07 57.2 5.2 55 4-59 474-550 (636)
17 PTZ00210 UDP-GlcNAc-dependent 95.8 0.012 2.7E-07 53.1 4.6 54 4-59 198-258 (382)
18 KOG3708|consensus 95.2 0.017 3.7E-07 54.1 3.3 49 9-59 103-151 (681)
19 KOG2288|consensus 94.2 0.063 1.4E-06 46.2 4.2 34 6-39 109-144 (274)
20 PTZ00210 UDP-GlcNAc-dependent 93.6 0.2 4.3E-06 45.5 6.3 85 112-198 79-210 (382)
21 PF04646 DUF604: Protein of un 26.7 32 0.0007 29.7 1.1 15 47-61 8-22 (255)
22 cd06532 Glyco_transf_25 Glycos 25.0 2.9E+02 0.0063 20.5 7.3 68 128-198 12-93 (128)
23 PF01755 Glyco_transf_25: Glyc 21.2 4.1E+02 0.0089 20.8 7.8 76 119-198 6-96 (200)
No 1
>KOG2246|consensus
Probab=99.89 E-value=8.9e-24 Score=188.53 Aligned_cols=94 Identities=49% Similarity=0.880 Sum_probs=90.9
Q ss_pred hhhhccceeeEEEEEecCCCCcchhHHHHHHhHhccCCeEEEEe---ccCCCCcceEEccCCCCCCCchHHHHHHHHHHH
Q psy5591 105 IAKELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMS---SSVDPKLGTINLNISEGRDHLWGKTKAAFRYVY 181 (198)
Q Consensus 105 ~~~~l~~~~rilc~V~T~~~~h~tr~~aV~~TWg~~c~~~~F~s---~~~d~~~p~v~l~~~~~~~~~w~Kt~~~l~y~~ 181 (198)
.+.++.+++||+|||+|.+.+|.+|++++++||++||+++.|++ ++.+..+|+|.++.+++++++|.|||.+|+|++
T Consensus 83 ~~~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~~~f~s~~~s~~~~~f~~v~~~~~~g~~~~~~ktr~~~~yv~ 162 (364)
T KOG2246|consen 83 IALWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDKGIFFSPTLSKDDSRFPTVYYNLPDGYRSLWRKTRIAFKYVY 162 (364)
T ss_pred chhccCCCceEEEEEEecCcCceeehhhhhcccccccCcceecCccCCCCCCcCceeeccCCcchHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred HhcCCcccEEEEecCCC
Q psy5591 182 EHYRGQYDWVMKADDDT 198 (198)
Q Consensus 182 ~~~~~~~DWfl~aDDDT 198 (198)
+++.++||||+||||||
T Consensus 163 ~~~~~~~dWf~~aDDDT 179 (364)
T KOG2246|consen 163 DHILKDYDWFLKADDDT 179 (364)
T ss_pred HhccCCCCeEEeccCCe
Confidence 99999999999999998
No 2
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.70 E-value=1.8e-18 Score=147.62 Aligned_cols=88 Identities=34% Similarity=0.512 Sum_probs=58.2
Q ss_pred ceeeEEEEEecCCCCcchhHHHHHHhHhccCCeEEE-EeccCCCCcceE---EccCCCCCCCchHHHHHHH-HHHHHhc-
Q psy5591 111 HKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLF-MSSSVDPKLGTI---NLNISEGRDHLWGKTKAAF-RYVYEHY- 184 (198)
Q Consensus 111 ~~~rilc~V~T~~~~h~tr~~aV~~TWg~~c~~~~F-~s~~~d~~~p~v---~l~~~~~~~~~w~Kt~~~l-~y~~~~~- 184 (198)
...+|||+|+|++++|.+|+++|++||+++|+++.| ||+.+|+.+|++ .+..++....+|++.+.++ .+.|+++
T Consensus 4 ~~~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~d~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~y~~~~ 83 (252)
T PF02434_consen 4 TLDDIFIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAEDPSLPTVTGVHLVNPNCDAGHCRKTLSCKMAYEYDHFL 83 (252)
T ss_dssp -GGGEEEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS--HHHHHHHGGGEEE-------------HHHHHHHHHHH
T ss_pred ccccEEEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCccccccccccccccccCCCcchhhHHHHHHHHHHHHHhhh
Confidence 457899999999999999999999999999999988 799999988876 4455666666777777665 3455544
Q ss_pred CCcccEEEEecCCC
Q psy5591 185 RGQYDWVMKADDDT 198 (198)
Q Consensus 185 ~~~~DWfl~aDDDT 198 (198)
..++|||+++||||
T Consensus 84 ~~~~~Wf~~~DDDt 97 (252)
T PF02434_consen 84 NSDKDWFCFADDDT 97 (252)
T ss_dssp HHT-SEEEEEETTE
T ss_pred cCCceEEEEEeCCc
Confidence 45789999999997
No 3
>KOG2246|consensus
Probab=99.70 E-value=4.2e-18 Score=152.22 Aligned_cols=106 Identities=25% Similarity=0.415 Sum_probs=83.6
Q ss_pred CccCcc--cccCeeeeHHHHHHHHhcCCCCCCeeecccccCCCCccccCCCceeeeeehhhhcccccccchhhhcCCCCC
Q psy5591 4 PESNLL--KYLQCYVVVENLRYMLIHYEKTTPIYFGCKFKPFVKQGYMSGGAGIQVFHYRALCGRENSLLVDKAIGLLDN 81 (198)
Q Consensus 4 ~~~~~~--~~~dT~v~~~nL~~~L~~~~~~~p~y~G~~~~~~~~~~y~~gg~G~vlS~~~~l~~~~~~~~vd~~~g~~~~ 81 (198)
.+-+|+ +|||||++|||||++|++|||++|+|||+++....+.+|++|||||++|. ++..++++. .+++.
T Consensus 167 ~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~~~~~y~~g~ag~~ls~------aa~~~la~~--l~~~~ 238 (364)
T KOG2246|consen 167 KDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSYFQNGYSSGGAGYVLSF------AALRRLAER--LLNNE 238 (364)
T ss_pred CCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccccccccccccCCCCcceeH------HHHHHHHHH--Hhcch
Confidence 456788 89999999999999999999999999999999887888999999999982 111233322 22456
Q ss_pred CCcccc--------cccccccccccCCCCchhhhhccceeeEEEEEe
Q psy5591 82 NLCKQI--------YLSILMEPLVEFPGEDVIAKELKHKVRVLCWVM 120 (198)
Q Consensus 82 ~~C~~~--------~~~~C~t~~~~~~~dsr~~~~l~~~~rilc~V~ 120 (198)
..|.+. .++.|+..+|+.+.+++ |.. .+.|++.+..
T Consensus 239 ~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~~--d~d-g~~rf~~~~p 282 (364)
T KOG2246|consen 239 DKCPQRYPSYGEDRRIGRCLAEVGVPATDER--DED-GRGRFLPLLP 282 (364)
T ss_pred hhcccccCCchhHHHHHHHHHHhCCCccCch--hhh-cccccCCCCh
Confidence 677664 46899999999999987 555 5667776644
No 4
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.46 E-value=9.7e-15 Score=124.68 Aligned_cols=56 Identities=30% Similarity=0.458 Sum_probs=38.3
Q ss_pred CccCcc--cccCeeeeHHHHHHHHhcCCCCCCeeecccccCC---------------CCccccCCCceeeeee
Q psy5591 4 PESNLL--KYLQCYVVVENLRYMLIHYEKTTPIYFGCKFKPF---------------VKQGYMSGGAGIQVFH 59 (198)
Q Consensus 4 ~~~~~~--~~~dT~v~~~nL~~~L~~~~~~~p~y~G~~~~~~---------------~~~~y~~gg~G~vlS~ 59 (198)
|+..|+ +|+||||+++||+++|++|||++|+|||+++... .++.|++||||||||+
T Consensus 85 ~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~~~~~~~f~~GGaG~vlSr 157 (252)
T PF02434_consen 85 SDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKSKDSGFWFATGGAGYVLSR 157 (252)
T ss_dssp HT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----------------------EE-GGG-EEEEH
T ss_pred CCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccccccccCcCceEeeCCCeeHHHhH
Confidence 345787 9999999999999999999999999999998642 2357999999999995
No 5
>PLN03153 hypothetical protein; Provisional
Probab=99.33 E-value=7.8e-13 Score=121.75 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=50.4
Q ss_pred CCccCcc--cccCeeeeHHHHHHHHhcCCCCCCeeecccccCCC-----CccccCCCceeeeee
Q psy5591 3 PPESNLL--KYLQCYVVVENLRYMLIHYEKTTPIYFGCKFKPFV-----KQGYMSGGAGIQVFH 59 (198)
Q Consensus 3 ~~~~~~~--~~~dT~v~~~nL~~~L~~~~~~~p~y~G~~~~~~~-----~~~y~~gg~G~vlS~ 59 (198)
-|+-+|| .|||||++++||+++|++||+++|+|||....... ++.|++|||||+||.
T Consensus 208 ~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~~f~~~fA~GGAG~~LSr 271 (537)
T PLN03153 208 LPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANSYFSHNMAFGGGGIAISY 271 (537)
T ss_pred CCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccccccccccccCCceEEEcH
Confidence 4788999 99999999999999999999999999998876542 236899999999995
No 6
>KOG3708|consensus
Probab=98.82 E-value=1.4e-09 Score=99.75 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=67.8
Q ss_pred hhhhccceeeEEEEEecCCCCcchhHHHHHHhHhccCCeEEEEeccCC--CCcceEE-ccCCCCCCCchHHHHHHHHHHH
Q psy5591 105 IAKELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVD--PKLGTIN-LNISEGRDHLWGKTKAAFRYVY 181 (198)
Q Consensus 105 ~~~~l~~~~rilc~V~T~~~~h~tr~~aV~~TWg~~c~~~~F~s~~~d--~~~p~v~-l~~~~~~~~~w~Kt~~~l~y~~ 181 (198)
.++||++++|++.+|||.. +-+.+|++|-++|.+++.||.+... .++--.. +...+.+ ..|. +...++|++
T Consensus 18 ~~tELG~RErl~~aVmte~----tlA~a~NrT~ahhvprv~~F~~~~~i~~~~a~~~~vs~~d~r-~~~~-~s~vl~~l~ 91 (681)
T KOG3708|consen 18 AATELGTRERLMAAVMTES----TLALAINRTLAHHVPRVHLFADSSRIDNDLAQLTNVSPYDLR-GQKT-HSMVLGLLF 91 (681)
T ss_pred hhhhhhhHHHHHHHHHHHH----HHHHHHHHHHHhhcceeEEeeccccccccHhhccccCccccC-cccc-HHHHHHHHH
Confidence 4679999999999999932 8899999999999999999987643 2221111 1222333 3354 666999999
Q ss_pred HhcCCcccEEEEecCCC
Q psy5591 182 EHYRGQYDWVMKADDDT 198 (198)
Q Consensus 182 ~~~~~~~DWfl~aDDDT 198 (198)
+++.++||||+++.|+|
T Consensus 92 ~~~~~~YDwFll~~D~t 108 (681)
T KOG3708|consen 92 NMVHNNYDWFLLAKDST 108 (681)
T ss_pred HhhccccceEEEecCcc
Confidence 99999999999999997
No 7
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=98.62 E-value=1.4e-07 Score=85.29 Aligned_cols=85 Identities=25% Similarity=0.328 Sum_probs=68.6
Q ss_pred ceeeEEEEEecCCCCcchhHHHHHHhHhccC-----------CeEEEEeccCC---CCc------------ceEEccCCC
Q psy5591 111 HKVRVLCWVMTNPDNHNKKARHVKATWGKRC-----------NILLFMSSSVD---PKL------------GTINLNISE 164 (198)
Q Consensus 111 ~~~rilc~V~T~~~~h~tr~~aV~~TWg~~c-----------~~~~F~s~~~d---~~~------------p~v~l~~~~ 164 (198)
++..++.+|.|.|.+.+.|. +|++|||+.- -++.|+.+... ..+ .++.++..|
T Consensus 137 ~~~~LvIgI~Sap~~~~RR~-AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvD 215 (408)
T PLN03193 137 RRYLMVVGINTAFSSRKRRD-SVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVE 215 (408)
T ss_pred ceEEEEEEEeCCCCCHHHHH-HHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEeccc
Confidence 45788999999999887665 9999999742 24578887753 111 356778889
Q ss_pred CCCCchHHHHHHHHHHHHhcCCcccEEEEecCCC
Q psy5591 165 GRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198 (198)
Q Consensus 165 ~~~~~w~Kt~~~l~y~~~~~~~~~DWfl~aDDDT 198 (198)
+|.++-.||...|++++... ++++++|+|||+
T Consensus 216 sY~NLT~KTl~~f~wA~~~~--dAkF~mK~DDDv 247 (408)
T PLN03193 216 GYLELSAKTKTYFATAVAMW--DADFYVKVDDDV 247 (408)
T ss_pred ccccchHHHHHHHHHHHHcC--CCeEEEEcCCCc
Confidence 99999999999999999875 799999999996
No 8
>PLN03153 hypothetical protein; Provisional
Probab=98.20 E-value=6.2e-06 Score=76.64 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=62.0
Q ss_pred ceeeEEEEEecCCCCcchhHHHHHHhHhccCC-eEEEE----ec-cCCCCcceEEccCCCC------CCCchHHHHHH--
Q psy5591 111 HKVRVLCWVMTNPDNHNKKARHVKATWGKRCN-ILLFM----SS-SVDPKLGTINLNISEG------RDHLWGKTKAA-- 176 (198)
Q Consensus 111 ~~~rilc~V~T~~~~h~tr~~aV~~TWg~~c~-~~~F~----s~-~~d~~~p~v~l~~~~~------~~~~w~Kt~~~-- 176 (198)
.-..|+++|.++.+.++.|...|+.+|....- ..+|+ ++ ..+..+|++.+...++ ..++++ .+.+
T Consensus 120 ~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~~~~~~~~P~i~is~d~s~f~y~~~~Gh~s-a~rI~r 198 (537)
T PLN03153 120 SLNHIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSPEEGDDSLPPIMVSEDTSRFRYTNPTGHPS-GLRISR 198 (537)
T ss_pred ccccEEEEEEEchhhhhhhhhhhhhhcCcccceeEEEecccCCCCCCcCCCCCEEeCCCcccccccCCCCcHH-HHHHHH
Confidence 34689999999999999999999999998443 34443 22 2567889998866544 224455 3334
Q ss_pred -HHHHHHhcCCcccEEEEecCCC
Q psy5591 177 -FRYVYEHYRGQYDWVMKADDDT 198 (198)
Q Consensus 177 -l~y~~~~~~~~~DWfl~aDDDT 198 (198)
....+..+..+.+||+++||||
T Consensus 199 mv~et~~~~~pd~kWfVf~DDDT 221 (537)
T PLN03153 199 IVLESFRLGLPDVRWFVLGDDDT 221 (537)
T ss_pred HHHHHHHhhCCCCCEEEEecCCc
Confidence 3333444467899999999998
No 9
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=98.18 E-value=5.7e-06 Score=78.90 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=65.4
Q ss_pred eeeEEEEEecCCCCcchhHHHHHHhHhccC------CeEEEEeccCC-CCc------------ceEEccCCCCCCCchHH
Q psy5591 112 KVRVLCWVMTNPDNHNKKARHVKATWGKRC------NILLFMSSSVD-PKL------------GTINLNISEGRDHLWGK 172 (198)
Q Consensus 112 ~~rilc~V~T~~~~h~tr~~aV~~TWg~~c------~~~~F~s~~~d-~~~------------p~v~l~~~~~~~~~w~K 172 (198)
+..++.+|.|.|.+.+.|. ||++|||+.- -+..|+-+... +.+ .++..+..|+|.++-.|
T Consensus 384 ~~~LlI~V~Sap~nf~rR~-AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlK 462 (636)
T PLN03133 384 PLDLFIGVFSTANNFKRRM-AVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDYYSLITWK 462 (636)
T ss_pred ceEEEEEEeCCcccHHHHH-HHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeechhhhhHHH
Confidence 4689999999999887776 9999999842 13567777542 111 36777888999999999
Q ss_pred HHHHHHHHHHhcCCcccEEEEecCCC
Q psy5591 173 TKAAFRYVYEHYRGQYDWVMKADDDT 198 (198)
Q Consensus 173 t~~~l~y~~~~~~~~~DWfl~aDDDT 198 (198)
+..++.|... -.++++++|+|||+
T Consensus 463 tl~~~~wa~~--c~~akFilK~DDDv 486 (636)
T PLN03133 463 TLAICIFGTE--VVSAKYVMKTDDDA 486 (636)
T ss_pred HHHHHHHHHh--CCCceEEEEcCCce
Confidence 9998888753 35799999999996
No 10
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=98.17 E-value=4.5e-06 Score=68.06 Aligned_cols=69 Identities=23% Similarity=0.451 Sum_probs=55.6
Q ss_pred hHHHHHHhHhccCC------eEEEEeccCC---CCc------------ceEEccCCCCCCCchHHHHHHHHHHHHhcCCc
Q psy5591 129 KARHVKATWGKRCN------ILLFMSSSVD---PKL------------GTINLNISEGRDHLWGKTKAAFRYVYEHYRGQ 187 (198)
Q Consensus 129 r~~aV~~TWg~~c~------~~~F~s~~~d---~~~------------p~v~l~~~~~~~~~w~Kt~~~l~y~~~~~~~~ 187 (198)
|-.+|++||++... +++|+-+... +.+ .++.++..|+|.++..|+.++++|+.++. .+
T Consensus 2 rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c-~~ 80 (195)
T PF01762_consen 2 RRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHC-PN 80 (195)
T ss_pred hHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhC-Cc
Confidence 34599999999774 5678877654 111 36777889999999999999999999986 46
Q ss_pred ccEEEEecCCC
Q psy5591 188 YDWVMKADDDT 198 (198)
Q Consensus 188 ~DWfl~aDDDT 198 (198)
+++++|+|||+
T Consensus 81 ~~~v~k~DDD~ 91 (195)
T PF01762_consen 81 AKYVLKVDDDV 91 (195)
T ss_pred hhheeecCcEE
Confidence 99999999995
No 11
>KOG2288|consensus
Probab=97.96 E-value=2.3e-05 Score=66.99 Aligned_cols=85 Identities=25% Similarity=0.351 Sum_probs=68.6
Q ss_pred ceeeEEEEEecCCCCcchhHHHHHHhHhccCC-----------eEEEEeccCCC--------------CcceEEcc-CCC
Q psy5591 111 HKVRVLCWVMTNPDNHNKKARHVKATWGKRCN-----------ILLFMSSSVDP--------------KLGTINLN-ISE 164 (198)
Q Consensus 111 ~~~rilc~V~T~~~~h~tr~~aV~~TWg~~c~-----------~~~F~s~~~d~--------------~~p~v~l~-~~~ 164 (198)
++.-.+..|+|.+..++.|- +|++||...-+ .+.|+.+..+. .-..+.|+ ..|
T Consensus 9 ~k~l~vigI~T~f~s~~RR~-~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E 87 (274)
T KOG2288|consen 9 RKVLLVIGINTAFSSRKRRD-SVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE 87 (274)
T ss_pred cceEEEEEeecccchhhhHH-HHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH
Confidence 56778889999999887665 99999998832 34788887431 11246676 788
Q ss_pred CCCCchHHHHHHHHHHHHhcCCcccEEEEecCCC
Q psy5591 165 GRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198 (198)
Q Consensus 165 ~~~~~w~Kt~~~l~y~~~~~~~~~DWfl~aDDDT 198 (198)
+|..+..||++.|.+++.++ ++++++|||||+
T Consensus 88 ~Y~~Ls~Kt~~~f~~A~~~~--daeFyvKvDDDv 119 (274)
T KOG2288|consen 88 AYEELSAKTKAFFSAAVAHW--DAEFYVKVDDDV 119 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhc--cceEEEEccccc
Confidence 99999999999999999998 899999999996
No 12
>KOG2287|consensus
Probab=97.93 E-value=3.8e-05 Score=68.66 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=69.6
Q ss_pred eeeEEEEEecCCCCcchhHHHHHHhHhccCC------eEEEEeccCCCC--------------cceEEccCCCCCCCchH
Q psy5591 112 KVRVLCWVMTNPDNHNKKARHVKATWGKRCN------ILLFMSSSVDPK--------------LGTINLNISEGRDHLWG 171 (198)
Q Consensus 112 ~~rilc~V~T~~~~h~tr~~aV~~TWg~~c~------~~~F~s~~~d~~--------------~p~v~l~~~~~~~~~w~ 171 (198)
..+|+..|.|.+++...|- +|++|||..-. +.+|+-+...+. -.+|..+..|+|.++--
T Consensus 94 ~~~lLl~V~S~~~~farR~-aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df~Dty~nltl 172 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRN-AIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDFEDTYFNLTL 172 (349)
T ss_pred CceEEEEEecCCCCHHHHH-HHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEecccchhchHH
Confidence 4689999999999887665 99999999874 447877765421 13667788999999999
Q ss_pred HHHHHHHHHHHhcCCcccEEEEecCCC
Q psy5591 172 KTKAAFRYVYEHYRGQYDWVMKADDDT 198 (198)
Q Consensus 172 Kt~~~l~y~~~~~~~~~DWfl~aDDDT 198 (198)
|+.+++.|..++-. ++++.+|+|||+
T Consensus 173 Ktl~~l~w~~~~cp-~akfi~K~DDDv 198 (349)
T KOG2287|consen 173 KTLAILLWGVSKCP-DAKFILKIDDDV 198 (349)
T ss_pred HHHHHHHHHHhcCC-cceEEEeccCce
Confidence 99999999988754 799999999995
No 13
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=96.64 E-value=0.0027 Score=57.88 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=30.3
Q ss_pred ccCcc--cccCeeeeHHHHHHHHhcCCCCCCeeecccc
Q psy5591 5 ESNLL--KYLQCYVVVENLRYMLIHYEKTTPIYFGCKF 40 (198)
Q Consensus 5 ~~~~~--~~~dT~v~~~nL~~~L~~~~~~~p~y~G~~~ 40 (198)
...|| +|+|+||++++|..+|.+......+|+|+--
T Consensus 236 dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~ 273 (408)
T PLN03193 236 DADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMK 273 (408)
T ss_pred CCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecc
Confidence 44566 8999999999999999987766679999853
No 14
>KOG2287|consensus
Probab=96.16 E-value=0.0065 Score=54.40 Aligned_cols=38 Identities=18% Similarity=0.396 Sum_probs=34.0
Q ss_pred CccCcc--cccCeeeeHHHHHHHHhcC-CCCCCeeeccccc
Q psy5591 4 PESNLL--KYLQCYVVVENLRYMLIHY-EKTTPIYFGCKFK 41 (198)
Q Consensus 4 ~~~~~~--~~~dT~v~~~nL~~~L~~~-~~~~p~y~G~~~~ 41 (198)
|..+++ +|+|+||.++||..+|.+. ++++..|.|+-..
T Consensus 186 p~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~ 226 (349)
T KOG2287|consen 186 PDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQ 226 (349)
T ss_pred CcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecc
Confidence 556676 8999999999999999999 9999999997766
No 15
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=96.05 E-value=0.0078 Score=48.90 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=41.1
Q ss_pred CccCcc--cccCeeeeHHHHHHHHhcC--CCCCCeeecccccCC-----------------C--Cc-cccCCCceeeeee
Q psy5591 4 PESNLL--KYLQCYVVVENLRYMLIHY--EKTTPIYFGCKFKPF-----------------V--KQ-GYMSGGAGIQVFH 59 (198)
Q Consensus 4 ~~~~~~--~~~dT~v~~~nL~~~L~~~--~~~~p~y~G~~~~~~-----------------~--~~-~y~~gg~G~vlS~ 59 (198)
|..+++ +|+|+||++++|..+|... ++.++.+.|...... . .+ .|.+ |+||+||.
T Consensus 79 ~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~-G~~yvls~ 157 (195)
T PF01762_consen 79 PNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCS-GGGYVLSS 157 (195)
T ss_pred CchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCC-CCeEEecH
Confidence 445555 8999999999999999987 777888888776531 0 11 3555 68999994
No 16
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=96.04 E-value=0.0098 Score=57.18 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=41.8
Q ss_pred CccCcc--cccCeeeeHHHHHHHHhcCCCCCCeeecccccCC-------------------CCc-cccCCCceeeeee
Q psy5591 4 PESNLL--KYLQCYVVVENLRYMLIHYEKTTPIYFGCKFKPF-------------------VKQ-GYMSGGAGIQVFH 59 (198)
Q Consensus 4 ~~~~~~--~~~dT~v~~~nL~~~L~~~~~~~p~y~G~~~~~~-------------------~~~-~y~~gg~G~vlS~ 59 (198)
|..+|+ +|||+||.++||..+|.+.++.+.+|+|+-.... ..+ .|++ |+|||||.
T Consensus 474 ~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPpYas-G~gYVlS~ 550 (636)
T PLN03133 474 VSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAH-GPGYVVSR 550 (636)
T ss_pred CCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCCCCC-cCEEEEcH
Confidence 344566 8999999999999999988888889999765321 111 3554 68999994
No 17
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=95.83 E-value=0.012 Score=53.10 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=40.5
Q ss_pred CccCcc--cccCeeeeHHHHHHHHhcCCCCCCeeecccccCC-----CCccccCCCceeeeee
Q psy5591 4 PESNLL--KYLQCYVVVENLRYMLIHYEKTTPIYFGCKFKPF-----VKQGYMSGGAGIQVFH 59 (198)
Q Consensus 4 ~~~~~~--~~~dT~v~~~nL~~~L~~~~~~~p~y~G~~~~~~-----~~~~y~~gg~G~vlS~ 59 (198)
|...++ .|||+||.++++..+|.. .|+..+|+|+-.... ....|++ |.||+||+
T Consensus 198 P~a~YImKgDDDvFVrVp~lL~~Lr~-~prr~LY~G~v~~~~~p~Rd~~PpY~~-G~gYvLSr 258 (382)
T PTZ00210 198 PNVSYIVKGDDDIFIRVPKYLADLRV-MPRHGLYMGRYNYYNRIWRRNQLTYVN-GYCITLSR 258 (382)
T ss_pred CCCCeEEEcCCCeEeeHHHHHHHHhh-CCCCceEEEeeCCCCccccCCCCCccc-cceeeccH
Confidence 444555 799999999999999955 577889999765431 1345765 68999995
No 18
>KOG3708|consensus
Probab=95.20 E-value=0.017 Score=54.07 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=43.8
Q ss_pred ccccCeeeeHHHHHHHHhcCCCCCCeeecccccCCCCccccCCCceeeeee
Q psy5591 9 LKYLQCYVVVENLRYMLIHYEKTTPIYFGCKFKPFVKQGYMSGGAGIQVFH 59 (198)
Q Consensus 9 ~~~~dT~v~~~nL~~~L~~~~~~~p~y~G~~~~~~~~~~y~~gg~G~vlS~ 59 (198)
++-++|||.--.|..++.+.+-++++|||....+..+. -++++|+.||.
T Consensus 103 l~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~gs~r--C~l~~G~LLS~ 151 (681)
T KOG3708|consen 103 LAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAEDGSGR--CRLDTGMLLSQ 151 (681)
T ss_pred EecCcceecHHHHHHHHhhcccccccccchhhhCccCc--cccccceeecH
Confidence 48899999999999999999999999999988855333 99999999995
No 19
>KOG2288|consensus
Probab=94.24 E-value=0.063 Score=46.25 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=30.0
Q ss_pred cCcc--cccCeeeeHHHHHHHHhcCCCCCCeeeccc
Q psy5591 6 SNLL--KYLQCYVVVENLRYMLIHYEKTTPIYFGCK 39 (198)
Q Consensus 6 ~~~~--~~~dT~v~~~nL~~~L~~~~~~~p~y~G~~ 39 (198)
..|| ||+|+||.++.|...|+++-..--+|+|+-
T Consensus 109 aeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcm 144 (274)
T KOG2288|consen 109 AEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCM 144 (274)
T ss_pred ceEEEEccccceecHHHHHHHHHhhccCCceEEEEe
Confidence 4566 899999999999999999988877999983
No 20
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=93.55 E-value=0.2 Score=45.45 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=56.0
Q ss_pred eeeEEEEEecCCCCc--chhHHHHHHhHhccCC------e------EEEEe-ccCCC--------------CcceEEccC
Q psy5591 112 KVRVLCWVMTNPDNH--NKKARHVKATWGKRCN------I------LLFMS-SSVDP--------------KLGTINLNI 162 (198)
Q Consensus 112 ~~rilc~V~T~~~~h--~tr~~aV~~TWg~~c~------~------~~F~s-~~~d~--------------~~p~v~l~~ 162 (198)
+--|+..|++ +.++ .+|-.+.++||-+.-. . ++|+- -.+++ .-.+|.++.
T Consensus 79 ~~lv~~Gi~S-~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilpf 157 (382)
T PTZ00210 79 RFLAVLGIPS-VDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLPT 157 (382)
T ss_pred CceEEEeccC-CCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEec
Confidence 3456666664 4555 6677799999987543 1 13333 22222 113566666
Q ss_pred C------------------CCCCCchHHHHHHHHHHHHhcCCcccEEEEecCCC
Q psy5591 163 S------------------EGRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198 (198)
Q Consensus 163 ~------------------~~~~~~w~Kt~~~l~y~~~~~~~~~DWfl~aDDDT 198 (198)
. |.+-++..||...++|++... ...++++|+|||+
T Consensus 158 ~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~c-P~a~YImKgDDDv 210 (382)
T PTZ00210 158 NDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMF-PNVSYIVKGDDDI 210 (382)
T ss_pred ccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhC-CCCCeEEEcCCCe
Confidence 3 334468899999999988876 4789999999996
No 21
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=26.73 E-value=32 Score=29.74 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=11.4
Q ss_pred cccCCCceeeeeehh
Q psy5591 47 GYMSGGAGIQVFHYR 61 (198)
Q Consensus 47 ~y~~gg~G~vlS~~~ 61 (198)
.-+.||+||+||..|
T Consensus 8 ~MAfGGgG~~iS~pL 22 (255)
T PF04646_consen 8 NMAFGGGGFAISYPL 22 (255)
T ss_pred cccccCceeEEcHHH
Confidence 346799999999533
No 22
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=25.02 E-value=2.9e+02 Score=20.46 Aligned_cols=68 Identities=10% Similarity=0.145 Sum_probs=43.0
Q ss_pred hhHHHHHHhHhccCCeEEEEeccCCCCcceE--------------EccCCCCCCCchHHHHHHHHHHHHhcCCcccEEEE
Q psy5591 128 KKARHVKATWGKRCNILLFMSSSVDPKLGTI--------------NLNISEGRDHLWGKTKAAFRYVYEHYRGQYDWVMK 193 (198)
Q Consensus 128 tr~~aV~~TWg~~c~~~~F~s~~~d~~~p~v--------------~l~~~~~~~~~w~Kt~~~l~y~~~~~~~~~DWfl~ 193 (198)
.|-..+.+...+.--.+.||.......++.- .-++..+.-.++.....+|+.+.+. +.+|.+.
T Consensus 12 ~Rr~~~~~~~~~~~~~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~lSH~~~w~~~~~~---~~~~alI 88 (128)
T cd06532 12 DRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPLTPGEIGCFLSHYKLWQKIVES---NLEYALI 88 (128)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccccccCCHHHHHHHhHHHhhhhcCCCCChhhHHHHHHHHHHHHHHHHc---CCCeEEE
Confidence 4555776666555556778877654433210 1112233336788888889988874 5789999
Q ss_pred ecCCC
Q psy5591 194 ADDDT 198 (198)
Q Consensus 194 aDDDT 198 (198)
.+||.
T Consensus 89 lEDDv 93 (128)
T cd06532 89 LEDDA 93 (128)
T ss_pred EccCc
Confidence 99983
No 23
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=21.15 E-value=4.1e+02 Score=20.81 Aligned_cols=76 Identities=11% Similarity=0.143 Sum_probs=47.1
Q ss_pred EecCCCCcchhHHHHHHhHhccCCeEEEEeccCCCCcce------E---------EccCCCCCCCchHHHHHHHHHHHHh
Q psy5591 119 VMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKLGT------I---------NLNISEGRDHLWGKTKAAFRYVYEH 183 (198)
Q Consensus 119 V~T~~~~h~tr~~aV~~TWg~~c~~~~F~s~~~d~~~p~------v---------~l~~~~~~~~~w~Kt~~~l~y~~~~ 183 (198)
|.+=+... .|...+.+-..+.--.+.||.......++. . .-++..+.=+|+.....+|+.+.+.
T Consensus 6 vInL~~~~-~Rr~~~~~~~~~~~~~~e~~~Avdg~~l~~~~~~~~~~~~~~~~~~~~~lt~gEiGC~lSH~~~w~~~v~~ 84 (200)
T PF01755_consen 6 VINLDRST-ERRERIQQQLAKLGINFEFFDAVDGRDLSEDELFRRYDPELFKKRYGRPLTPGEIGCALSHIKAWQRIVDS 84 (200)
T ss_pred EEECCCCH-HHHHHHHHHHHHcCCceEEEEeecccccchHHHHHHhhhhhhhccccccCCcceEeehhhHHHHHHHHHHc
Confidence 33334443 455577777666655678888765443322 1 0112223335788888899998875
Q ss_pred cCCcccEEEEecCCC
Q psy5591 184 YRGQYDWVMKADDDT 198 (198)
Q Consensus 184 ~~~~~DWfl~aDDDT 198 (198)
+.++.+...||.
T Consensus 85 ---~~~~~lIlEDDv 96 (200)
T PF01755_consen 85 ---GLEYALILEDDV 96 (200)
T ss_pred ---CCCeEEEEeccc
Confidence 588999999983
Done!