Query psy5591
Match_columns 198
No_of_seqs 205 out of 575
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 21:28:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.6 9.6E-16 3.3E-20 131.3 2.8 85 111-198 11-104 (280)
2 2j0a_A Beta-1,3-N-acetylglucos 99.4 1.7E-14 5.9E-19 123.5 2.1 56 4-59 92-164 (280)
3 2lt8_A Eurocin; A/B-fold, cyst 16.9 29 0.001 20.1 0.0 9 32-40 29-37 (42)
4 2k5d_A Uncharacterized protein 15.9 47 0.0016 24.3 1.0 12 185-196 93-104 (116)
5 3oak_C Transcription elongatio 12.2 1.2E+02 0.0041 16.9 1.7 22 171-192 4-27 (31)
6 3pz7_A Dixin; DIX domain, olig 9.4 4.5E+02 0.015 18.1 4.4 50 140-197 7-57 (91)
7 2l3o_A Interleukin 3; cytokine 8.6 1.7E+02 0.0057 21.5 1.9 25 12-36 62-92 (127)
8 1s4n_A Glycolipid 2-alpha-mann 6.6 1.9E+02 0.0067 24.9 1.7 15 184-198 142-156 (348)
9 1wh6_A CUT-like 2, homeobox pr 6.4 85 0.0029 22.2 -0.6 32 10-41 15-46 (101)
10 3kdp_B Sodium/potassium-transp 6.3 4E+02 0.014 22.1 3.4 21 12-32 78-99 (286)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.55 E-value=9.6e-16 Score=131.25 Aligned_cols=85 Identities=21% Similarity=0.210 Sum_probs=65.9
Q ss_pred ceeeEEEEEecCCCCcchhHHHHHHhHhccCCeEEE-EeccCCCCcceEEcc------C--CCCCCCchHHHHHHHHHHH
Q psy5591 111 HKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLF-MSSSVDPKLGTINLN------I--SEGRDHLWGKTKAAFRYVY 181 (198)
Q Consensus 111 ~~~rilc~V~T~~~~h~tr~~aV~~TWg~~c~~~~F-~s~~~d~~~p~v~l~------~--~~~~~~~w~Kt~~~l~y~~ 181 (198)
...+|||+|+|++++|.+|+++|++||+++|++..| ||+.+++.+|.+.++ . ..++.++|.|+...+++..
T Consensus 11 ~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~~~fifsd~~d~~l~~~~~~~~~~~~~~~~~~~~~l~~K~~~~~~~~l 90 (280)
T 2j0a_A 11 QLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDERLQERLGPHLVVTQCSAEHSHPALSCKMAAEFDAFL 90 (280)
T ss_dssp CGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGGGEEEEESSCCHHHHHHHGGGEEECCC-------CCCHHHHHHHHHHH
T ss_pred CcccEEEEEECcHHHHHHHHHHHHHHHhccCCCceEEEcCCCcccccccccccceeccccccccccchHHHHHHHHHHHh
Confidence 578999999999999999999999999999986554 898888777643221 1 2356788999998877543
Q ss_pred HhcCCcccEEEEecCCC
Q psy5591 182 EHYRGQYDWVMKADDDT 198 (198)
Q Consensus 182 ~~~~~~~DWfl~aDDDT 198 (198)
. .++|||+++||||
T Consensus 91 ~---~~~~Wf~~~DDDt 104 (280)
T 2j0a_A 91 V---SGLRWFCHVDDDN 104 (280)
T ss_dssp H---HTCSEEEEEETTE
T ss_pred C---CCCcEEEEeCCCc
Confidence 2 4899999999997
No 2
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.44 E-value=1.7e-14 Score=123.46 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=48.1
Q ss_pred CccCcc--cccCeeeeHHHHHHHHhcCCCCCCeeecccccCC---------------CCccccCCCceeeeee
Q psy5591 4 PESNLL--KYLQCYVVVENLRYMLIHYEKTTPIYFGCKFKPF---------------VKQGYMSGGAGIQVFH 59 (198)
Q Consensus 4 ~~~~~~--~~~dT~v~~~nL~~~L~~~~~~~p~y~G~~~~~~---------------~~~~y~~gg~G~vlS~ 59 (198)
|+-+|+ +||||||+++||+++|++|||++|+|||+++... .++.|++||||||||.
T Consensus 92 ~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~~~~~~~~~~~~~~~~~y~~GGaG~vlSr 164 (280)
T 2j0a_A 92 SGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHASELQSKQRTKLVRFWFATGGAGFCINR 164 (280)
T ss_dssp HTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC-------------------CCEECGGGCEEEEH
T ss_pred CCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccccccccCccccccccccCcccCCCEEEECH
Confidence 466788 8999999999999999999999999999988642 1468999999999994
No 3
>2lt8_A Eurocin; A/B-fold, cysteine stabilised, antimicrobial protein; NMR {Eurotium amstelodami}
Probab=16.91 E-value=29 Score=20.09 Aligned_cols=9 Identities=33% Similarity=0.630 Sum_probs=7.1
Q ss_pred CCeeecccc
Q psy5591 32 TPIYFGCKF 40 (198)
Q Consensus 32 ~p~y~G~~~ 40 (198)
-|||+|++.
T Consensus 29 gpwylghpt 37 (42)
T 2lt8_A 29 GPWYLGHPT 37 (42)
T ss_dssp CCSSSSSCE
T ss_pred CccccCCCc
Confidence 589999873
No 4
>2k5d_A Uncharacterized protein SAG0934; solution structure, primosomal protein, DUF961, construct optimized, structural genomics; NMR {Streptococcus agalactiae serogroup V}
Probab=15.93 E-value=47 Score=24.26 Aligned_cols=12 Identities=50% Similarity=0.961 Sum_probs=10.5
Q ss_pred CCcccEEEEecC
Q psy5591 185 RGQYDWVMKADD 196 (198)
Q Consensus 185 ~~~~DWfl~aDD 196 (198)
.-+-||+++|||
T Consensus 93 ga~v~w~ika~d 104 (116)
T 2k5d_A 93 GADVDWYIKADD 104 (116)
T ss_dssp SCCCSCEEECSC
T ss_pred CceeeeEEEecc
Confidence 467999999998
No 5
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=12.25 E-value=1.2e+02 Score=16.88 Aligned_cols=22 Identities=18% Similarity=0.598 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcC--CcccEEE
Q psy5591 171 GKTKAAFRYVYEHYR--GQYDWVM 192 (198)
Q Consensus 171 ~Kt~~~l~y~~~~~~--~~~DWfl 192 (198)
..+..+|.-+++-+. .+|+|-+
T Consensus 4 ~~~~~aledm~eiFGdG~dY~WAL 27 (31)
T 3oak_C 4 THMSDKIDEMYDIFGDGHDYDWAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHCCSCTTHHHH
T ss_pred hhHHHHHHHHHHHhCCCchhhhhh
Confidence 457778888888875 5888854
No 6
>3pz7_A Dixin; DIX domain, oligomerization, signaling protein; 2.44A {Homo sapiens}
Probab=9.43 E-value=4.5e+02 Score=18.10 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=28.1
Q ss_pred cCCeEEEEeccCCCCcc-eEEccCCCCCCCchHHHHHHHHHHHHhcCCcccEEEEecCC
Q psy5591 140 RCNILLFMSSSVDPKLG-TINLNISEGRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDD 197 (198)
Q Consensus 140 ~c~~~~F~s~~~d~~~p-~v~l~~~~~~~~~w~Kt~~~l~y~~~~~~~~~DWfl~aDDD 197 (198)
.+.+++++.+ ++..| .+.++.+.+.= |..-|+-+... ...|.+|+|.-|+
T Consensus 7 ~~TkV~Y~~d--~e~tPY~~~Ip~~~~~i-----TL~dFK~~l~r-~g~yryfFK~~d~ 57 (91)
T 3pz7_A 7 TCTKVLYFTD--RSLTPFMVNIPKRLEEV-----TLKDFKAAIDR-EGNHRYHFKAMDP 57 (91)
T ss_dssp CCEEEEEECT--TCSSCEEEEESSCSTTC-----BHHHHHHHHCC-CSCEEEEEEEEET
T ss_pred ceeEEEEEcC--CCCCceEEECcCCcccc-----cHHHHHHhhCC-CCCceEEEeeeCc
Confidence 4567888776 34455 35566553221 33345544443 2369999996543
No 7
>2l3o_A Interleukin 3; cytokine; NMR {Mus musculus}
Probab=8.56 E-value=1.7e+02 Score=21.51 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=18.2
Q ss_pred cCeeeeHHHHHHHHhcCC------CCCCeee
Q psy5591 12 LQCYVVVENLRYMLIHYE------KTTPIYF 36 (198)
Q Consensus 12 ~dT~v~~~nL~~~L~~~~------~~~p~y~ 36 (198)
-|+++|+.||.++....- -..||+|
T Consensus 62 qn~s~I~snLk~l~pcLPTatp~~~~~pI~I 92 (127)
T 2l3o_A 62 EDRYVIKSNLQKLNACLPTSANDSALPGVFI 92 (127)
T ss_dssp GGGSCCHHHHHHHHHHSCCCCCSSCCCCCCC
T ss_pred ccHHHHHHHHHhccccCCCCCCcccCCCeee
Confidence 478899999999987542 2455676
No 8
>1s4n_A Glycolipid 2-alpha-mannosyltransferase; alpha/beta fold, nucleotide-binding domain, rossmann fold; HET: NAG BMA MAN NDG; 2.01A {Saccharomyces cerevisiae} SCOP: c.68.1.16 PDB: 1s4o_A* 1s4p_A*
Probab=6.56 E-value=1.9e+02 Score=24.88 Aligned_cols=15 Identities=27% Similarity=0.716 Sum_probs=12.9
Q ss_pred cCCcccEEEEecCCC
Q psy5591 184 YRGQYDWVMKADDDT 198 (198)
Q Consensus 184 ~~~~~DWfl~aDDDT 198 (198)
.+.+|||+.|+++|+
T Consensus 142 ~l~~YdyYWRvEPdv 156 (348)
T 1s4n_A 142 LLEEYDWYWRVEPDI 156 (348)
T ss_dssp GGTTCSEEEECCTTC
T ss_pred ccccCceEEEeCCCc
Confidence 467999999999885
No 9
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=6.40 E-value=85 Score=22.22 Aligned_cols=32 Identities=6% Similarity=0.015 Sum_probs=25.9
Q ss_pred cccCeeeeHHHHHHHHhcCCCCCCeeeccccc
Q psy5591 10 KYLQCYVVVENLRYMLIHYEKTTPIYFGCKFK 41 (198)
Q Consensus 10 ~~~dT~v~~~nL~~~L~~~~~~~p~y~G~~~~ 41 (198)
.+-||.-+...+++||....-++.+|.-+-+.
T Consensus 15 ~~lDTk~I~~~ike~L~~~~isQ~~FA~~ILg 46 (101)
T 1wh6_A 15 REVDTLELTRQVKEKLAKNGICQRIFGEKVLG 46 (101)
T ss_dssp SCCCHHHHHHHHHHHHHTTTCCHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHHHHcCCcHHHHHHHHHc
Confidence 67899999999999999988877765544443
No 10
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=6.31 E-value=4e+02 Score=22.12 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=14.6
Q ss_pred cCeeee-HHHHHHHHhcCCCCC
Q psy5591 12 LQCYVV-VENLRYMLIHYEKTT 32 (198)
Q Consensus 12 ~dT~v~-~~nL~~~L~~~~~~~ 32 (198)
..||-. ++.|.+||++|+.+.
T Consensus 78 ~~s~~~yv~~L~~FL~~Y~~~~ 99 (286)
T 3kdp_B 78 PQSYESYVVSIVRFLEKYKDLA 99 (286)
T ss_dssp TTTTHHHHHHHHHHHTTCCTTT
T ss_pred hhhHHHHHHHHHHHHHHhcchh
Confidence 344433 578999999998643
Done!