Query psy5591
Match_columns 198
No_of_seqs 205 out of 575
Neff 6.7
Searched_HMMs 13730
Date Fri Aug 16 21:28:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5591.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5591hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s4na_ c.68.1.16 (A:) Glycoli 27.5 11 0.00081 30.5 1.7 14 185-198 134-147 (339)
2 d1kifa1 c.4.1.2 (A:1-194,A:288 11.5 12 0.0009 26.5 -1.7 12 48-59 216-227 (246)
3 d2zkmx4 c.1.18.1 (X:312-660) P 11.2 9.1 0.00066 30.8 -2.7 32 26-57 298-341 (349)
4 d2cupa2 g.39.1.3 (A:35-65) Fou 11.2 39 0.0028 17.4 0.8 24 91-118 1-24 (31)
5 d1iyea_ e.17.1.1 (A:) Branched 8.4 1.1E+02 0.0082 22.6 3.1 51 145-195 249-304 (304)
6 d1bl0a1 a.4.1.8 (A:9-62) MarA 6.3 1.5E+02 0.011 15.9 2.2 17 172-188 4-20 (54)
7 d1a62a2 b.40.4.5 (A:48-125) Rh 6.2 99 0.0072 19.1 1.4 23 2-24 19-42 (78)
8 d1yuaa1 g.41.3.3 (A:1-65) Prok 6.1 49 0.0036 20.0 -0.2 22 114-135 35-56 (65)
9 d1oe8a2 c.47.1.5 (A:4-84) Clas 5.8 1.2E+02 0.009 17.9 1.7 31 153-184 48-79 (81)
10 d1v5ra1 d.82.4.1 (A:7-91) Grow 5.8 32 0.0023 22.1 -1.4 13 18-30 58-70 (85)
No 1
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.53 E-value=11 Score=30.52 Aligned_cols=14 Identities=29% Similarity=0.767 Sum_probs=12.9
Q ss_pred CCcccEEEEecCCC
Q psy5591 185 RGQYDWVMKADDDT 198 (198)
Q Consensus 185 ~~~~DWfl~aDDDT 198 (198)
+.+|||++|+|||+
T Consensus 134 L~~YdYywRvdpD~ 147 (339)
T d1s4na_ 134 LEEYDWYWRVEPDI 147 (339)
T ss_dssp GTTCSEEEECCTTC
T ss_pred hhccceEEEeCCCc
Confidence 68999999999995
No 2
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=11.51 E-value=12 Score=26.54 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=10.9
Q ss_pred ccCCCceeeeee
Q psy5591 48 YMSGGAGIQVFH 59 (198)
Q Consensus 48 y~~gg~G~vlS~ 59 (198)
|.+||+||.||.
T Consensus 216 yghgg~G~~l~~ 227 (246)
T d1kifa1 216 YGHGGYGLTIHW 227 (246)
T ss_dssp ECCGGGHHHHHH
T ss_pred cCCCCCeEEeeh
Confidence 899999999983
No 3
>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.22 E-value=9.1 Score=30.84 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=22.4
Q ss_pred hcCCCCCCeeecccccCC-----------CCcccc-CCCceeee
Q psy5591 26 IHYEKTTPIYFGCKFKPF-----------VKQGYM-SGGAGIQV 57 (198)
Q Consensus 26 ~~~~~~~p~y~G~~~~~~-----------~~~~y~-~gg~G~vl 57 (198)
+.|||...|-.|+.+-.- ....|. .||+||||
T Consensus 298 SNynP~~~W~~GcQ~VALN~Qt~D~~m~ln~g~F~~NG~cGYVL 341 (349)
T d2zkmx4 298 SNYMPQMFWNAGCQMVALNFQTMDLPMQQNMAVFEFNGQSGYLL 341 (349)
T ss_dssp CCCCSHHHHHTTCSEECBCTTCCSHHHHHHHHHTTTGGGCSEEE
T ss_pred CCCCcHHHHhcCccEeEecccCCCHHHHHHHHHHHhcCCcCeEE
Confidence 478888889899987631 011343 58999999
No 4
>d2cupa2 g.39.1.3 (A:35-65) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.21 E-value=39 Score=17.36 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=14.7
Q ss_pred ccccccccCCCCchhhhhccceeeEEEE
Q psy5591 91 ILMEPLVEFPGEDVIAKELKHKVRVLCW 118 (198)
Q Consensus 91 ~C~t~~~~~~~dsr~~~~l~~~~rilc~ 118 (198)
+|+.-++++..++ -..+..+|+|.
T Consensus 1 RCaKC~hpLA~E~----F~aKd~kI~C~ 24 (31)
T d2cupa2 1 RCAKCLHPLANET----FVAKDNKILCN 24 (31)
T ss_dssp CCSSSCCCTTSSC----CEEETTEEECH
T ss_pred CchhhccccccCc----ccccCCeEeec
Confidence 4666666666663 23356788885
No 5
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]}
Probab=8.38 E-value=1.1e+02 Score=22.60 Aligned_cols=51 Identities=18% Similarity=0.410 Sum_probs=31.4
Q ss_pred EEEeccCCCCcceEEcc---CCCCC-CCchHHHHHHHHHHHH-hcCCcccEEEEec
Q psy5591 145 LFMSSSVDPKLGTINLN---ISEGR-DHLWGKTKAAFRYVYE-HYRGQYDWVMKAD 195 (198)
Q Consensus 145 ~F~s~~~d~~~p~v~l~---~~~~~-~~~w~Kt~~~l~y~~~-~~~~~~DWfl~aD 195 (198)
+|++++...-.|+..++ +.++. +.++.|.++.|.-+.. ...+..+|..++|
T Consensus 249 vfltns~~gi~PV~~id~~~~~~g~~Gpit~~L~~~~~~i~~g~~~~~~~W~~~v~ 304 (304)
T d1iyea_ 249 VFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVN 304 (304)
T ss_dssp EEEEETTTEEEEEEEETTEECTTSSCCHHHHHHHHHHHGGGTTSSCCCSCCEEECC
T ss_pred HhhhCCCCeEEEEEEECCEEcCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCeECC
Confidence 57777766667877764 23322 2466666666654432 2345678999886
No 6
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=6.31 E-value=1.5e+02 Score=15.94 Aligned_cols=17 Identities=0% Similarity=0.219 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhcCCcc
Q psy5591 172 KTKAAFRYVYEHYRGQY 188 (198)
Q Consensus 172 Kt~~~l~y~~~~~~~~~ 188 (198)
...+++.||.+|+.++.
T Consensus 4 ~i~~v~~yI~~~~~~~~ 20 (54)
T d1bl0a1 4 TIHSILDWIEDNLESPL 20 (54)
T ss_dssp HHHHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHhccCCCC
Confidence 46678999999986653
No 7
>d1a62a2 b.40.4.5 (A:48-125) Rho termination factor, RNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=6.16 E-value=99 Score=19.14 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=18.1
Q ss_pred CCCccCcc-cccCeeeeHHHHHHH
Q psy5591 2 RPPESNLL-KYLQCYVVVENLRYM 24 (198)
Q Consensus 2 ~~~~~~~~-~~~dT~v~~~nL~~~ 24 (198)
|.|++|++ -..|.||...-.|+|
T Consensus 19 R~~~~~y~~~~~DiyVs~s~Irrf 42 (78)
T d1a62a2 19 RSADSSYLAGPDDIYVSPSQIRRF 42 (78)
T ss_dssp ECGGGTTCCCTTCEEECHHHHHHT
T ss_pred ECCccCCCCCCcceEECHHHHHHh
Confidence 66778887 455899998888877
No 8
>d1yuaa1 g.41.3.3 (A:1-65) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=6.14 E-value=49 Score=19.97 Aligned_cols=22 Identities=23% Similarity=0.216 Sum_probs=17.2
Q ss_pred eEEEEEecCCCCcchhHHHHHH
Q psy5591 114 RVLCWVMTNPDNHNKKARHVKA 135 (198)
Q Consensus 114 rilc~V~T~~~~h~tr~~aV~~ 135 (198)
-+|-+--+.||+.+||++-|.+
T Consensus 35 GlFlAAs~FPKnRETRaP~V~E 56 (65)
T d1yuaa1 35 GVFLAANTFPKSRETRAPLVEE 56 (65)
T ss_dssp SCEEEETTTTSCCCCCSCBHHH
T ss_pred ceeeecccCCCccccccchHHH
Confidence 4566677889999999977754
No 9
>d1oe8a2 c.47.1.5 (A:4-84) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]}
Probab=5.82 E-value=1.2e+02 Score=17.88 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=21.2
Q ss_pred CCcceEEccCCCCCC-CchHHHHHHHHHHHHhc
Q psy5591 153 PKLGTINLNISEGRD-HLWGKTKAAFRYVYEHY 184 (198)
Q Consensus 153 ~~~p~v~l~~~~~~~-~~w~Kt~~~l~y~~~~~ 184 (198)
..+|...+|.-+..+ .+++ +.++++|+-++|
T Consensus 48 ~~lP~~~~p~l~~~~~~l~q-S~AI~~YLa~k~ 79 (81)
T d1oe8a2 48 GRLPAVKITDNHGHVKWMVE-SLAIARYMAKKH 79 (81)
T ss_dssp SCSCEEEEECTTCCEEEEES-HHHHHHHHHHHT
T ss_pred cCCCcccCCccccCCEEEEc-HHHHHHHHHHHh
Confidence 456777776543222 4665 888999999886
No 10
>d1v5ra1 d.82.4.1 (A:7-91) Growth-arrest-specific protein 2, GAS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.77 E-value=32 Score=22.13 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCC
Q psy5591 18 VENLRYMLIHYEK 30 (198)
Q Consensus 18 ~~nL~~~L~~~~~ 30 (198)
|+.|.+||.++||
T Consensus 58 w~~L~efL~k~dP 70 (85)
T d1v5ra1 58 WETFAGYLLKHDP 70 (85)
T ss_dssp EEEHHHHHHHHCH
T ss_pred HHHHHHHHHhcCh
Done!