RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5591
         (198 letters)



>gnl|CDD|216686 pfam01762, Galactosyl_T, Galactosyltransferase.  This family
           includes the galactosyltransferases
           UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-
           galactosyltransferase and UDP-Gal:beta-GlcNAc beta
           1,3-galactosyltranferase. Specific
           galactosyltransferases transfer galactose to GlcNAc
           terminal chains in the synthesis of the lacto-series
           oligosaccharides types 1 and 2.
          Length = 196

 Score = 29.2 bits (66), Expect = 1.2
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 158 INLNISEGRDHLWGKTKAAFRYVYEHYRGQYDWVMKADDD 197
           + ++  +  ++L  KT     Y          ++ K DDD
Sbjct: 52  VVVDFEDTYENLTFKTLTGLLYAVS-KAPSAKYIGKIDDD 90


>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
           subunit.  This model describes spermidine/putrescine ABC
           transporter, ATP binding subunit in bacteria and its
           equivalents in archaea. This transport system belong to
           the larger ATP-Binding Cassette (ABC) transporter
           superfamily. The characteristic feature of these
           transporter is the obligatory coupling of ATP hydrolysis
           to substrate translocation. The minimal configuration of
           bacterial ABC transport system: an ATPase or ATP binding
           subunit; An integral membrane protein; a hydrophilic
           polypetpide, which likely functions as substrate binding
           protein. Polyamines like spermidine and putrescine play
           vital role in cell proliferation, differentiation, and
           ion homeostasis. The concentration of polyamines within
           the cell are regulated by biosynthesis, degradation and
           transport (uptake and efflux included) [Transport and
           binding proteins, Amino acids, peptides and amines].
          Length = 325

 Score = 29.4 bits (66), Expect = 1.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 49  MSGGAGIQVFHYRALCGRENSLLVDKAIGLLDNNLCKQIYLSILM 93
           +SGG   +V   RAL  +   LL+D+ +  LD  L  Q+ L +  
Sbjct: 101 LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT 145


>gnl|CDD|222827 PHA01635, PHA01635, hypothetical protein.
          Length = 231

 Score = 29.0 bits (65), Expect = 1.6
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 151 VDPKLGTINLNISEGRDHLWGKTKAAFRYVYEHYRGQYDWVM 192
            DPK   +  +I +G   LW   + A  Y Y    G+  W+ 
Sbjct: 6   ADPKSIKVVSSIPQGATKLWENNELALYYTYGGSYGEVIWIF 47


>gnl|CDD|233843 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'.
           This family consists of the archaeal A' subunit of the
           DNA-directed RNA polymerase. The example from
           Methanocaldococcus jannaschii contains an intein.
          Length = 867

 Score = 27.8 bits (62), Expect = 5.1
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 43  FVKQGYMSGGAGIQVFHYRALCGRENSLLVDKAI 76
           FV+  +  G    + F + A  GRE   LVD A+
Sbjct: 776 FVRSSFKKGLDPTEYF-FHAAGGREG--LVDTAV 806


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0724    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,162,164
Number of extensions: 921708
Number of successful extensions: 573
Number of sequences better than 10.0: 1
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 9
Length of query: 198
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 106
Effective length of database: 6,857,034
Effective search space: 726845604
Effective search space used: 726845604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.4 bits)