RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5591
         (198 letters)



>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR;
           glycosyltransferase, developmental protein,
           transmembrane, G apparatus, notch signaling; 1.8A {Mus
           musculus} PDB: 2j0b_A*
          Length = 280

 Score = 72.9 bits (178), Expect = 8e-16
 Identities = 11/90 (12%), Positives = 20/90 (22%), Gaps = 6/90 (6%)

Query: 115 VLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPK------LGTINLNISEGRDH 168
           +   V T    H  +   +  TW  R     F+ +    +         + +        
Sbjct: 15  IFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDERLQERLGPHLVVTQCSAEHS 74

Query: 169 LWGKTKAAFRYVYEHYRGQYDWVMKADDDT 198
               +                W    DDD 
Sbjct: 75  HPALSCKMAAEFDAFLVSGLRWFCHVDDDN 104



 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 15/56 (26%)

Query: 15  YVVVENLRYMLIHYEKTTPIYFGCKF---------------KPFVKQGYMSGGAGI 55
           YV  + L  +L  + +   +Y G                     V+  + +GGAG 
Sbjct: 105 YVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHASELQSKQRTKLVRFWFATGGAGF 160


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.3 bits (73), Expect = 0.11
 Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 73/172 (42%)

Query: 43  FVKQGYMSGGAGIQVFHYRALCGRENSLLVDKAIGLLDNNLCKQI------------YLS 90
            V    +SG         ++L G   +L   KA   LD +   +I            +L 
Sbjct: 377 LV----VSG-------PPQSLYGLNLTLRKAKAPSGLDQS---RIPFSERKLKFSNRFLP 422

Query: 91  I-------LMEPLVEFPGEDVI-------AKELKHKV-----------------RVLC-W 118
           +       L+ P  +   +D++       AK+++  V                   +   
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482

Query: 119 VMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDP----KLGTINLNISEGR 166
           ++  P    +     KAT      IL F      P     LG +     +G 
Sbjct: 483 IIRLP-VKWETTTQFKATH-----ILDF-----GPGGASGLGVLTHRNKDGT 523



 Score = 28.5 bits (63), Expect = 1.6
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 43/149 (28%)

Query: 53   AGIQVFH----YRALCGRENSLLVDKAI------GLLDNNLCKQI------YLSILMEP- 95
            AG    H    Y AL    + + ++  +      G+       +       Y  I + P 
Sbjct: 1760 AG----HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815

Query: 96   --LVEFPGEDV--IAKELKHKVRVLCWVMTNPDNHNKK------ARHVKATWGKRCNILL 145
                 F  E +  + + +  +   L  ++    N+N +      A  ++A      N+L 
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIV----NYNVENQQYVAAGDLRALD-TVTNVLN 1870

Query: 146  FMSSSVDPKLGTINLNIS----EGRDHLW 170
            F+      K+  I L  S    E   HL+
Sbjct: 1871 FIKL---QKIDIIELQKSLSLEEVEGHLF 1896


>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta
           barrel, nucleotidyltransferase; 3.57A {Homo sapiens}
           PDB: 3r2w_A
          Length = 528

 Score = 28.2 bits (62), Expect = 1.8
 Identities = 10/82 (12%), Positives = 26/82 (31%), Gaps = 1/82 (1%)

Query: 96  LVEFPGEDVIAKELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKL 155
            ++   + +      +   V   +M + +      + ++     R  I  F  S   P++
Sbjct: 158 FLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRY-PRI 216

Query: 156 GTINLNISEGRDHLWGKTKAAF 177
              +L          G+   A+
Sbjct: 217 NKESLLPVAKDVSYSGENTEAW 238


>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed
           beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
          Length = 488

 Score = 27.0 bits (59), Expect = 4.2
 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 1/54 (1%)

Query: 102 EDVIAKELKHKVRVLCWVMTNPDNHNKKARHVKATWGKRCNILLFMSSSVDPKL 155
             +     ++   V   +M + +        +K     R  I  F  S   P++
Sbjct: 129 RQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRF-PRV 181


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0498    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,145,587
Number of extensions: 176068
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 8
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.5 bits)