RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5591
         (198 letters)



>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 500

 Score = 28.4 bits (63), Expect = 0.58
 Identities = 6/36 (16%), Positives = 14/36 (38%)

Query: 59  HYRALCGRENSLLVDKAIGLLDNNLCKQIYLSILME 94
             R      NSL +D  +  +  ++     L  +++
Sbjct: 271 DERCYRLWINSLGIDSYVNNVFEDVRNGWILLEVLD 306


>d1ihma_ b.121.4.3 (A:) Calicivirus capsid protein {Norwalk virus
           [TaxId: 11983]}
          Length = 492

 Score = 25.6 bits (56), Expect = 4.5
 Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 3/41 (7%)

Query: 153 PKLGTINLNISEGRDHLWGKTKAAFRYVYEHYRGQYD-WVM 192
           P LG+I  N     +++   +             Q D W +
Sbjct: 326 PHLGSIQANGIGSGNYVGVLSW--ISPPSHPSGSQVDLWKI 364


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 787,804
Number of extensions: 35738
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 3
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.5 bits)