BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5592
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 160/216 (74%), Gaps = 14/216 (6%)
Query: 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFN 60
M+RLH+KVNIIP+IAKADT+TPEEC FKKQI+ EI +HKI+IY+FP + +++ +K
Sbjct: 161 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPE--TDDEEENKLV 218
Query: 61 KNLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDL 120
K ++DR+P AVVGSNT++E++GK+VRGR+YPWG+AEVEN EHCDF LRNMLIRT++QDL
Sbjct: 219 KKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDL 278
Query: 121 KDVTSNVHYENFRCRKLAGLGTDG-----KPRLLNKNPLAQMEEEKREHEAKMKKMEVDX 175
KDVT+NVHYEN+R RKLA + +G L K+PLAQMEEE+REH AKMKKME++
Sbjct: 279 KDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEM 338
Query: 176 XXXXXXXXXXXXXXXXDSEID-------MKKSLEAQ 204
DSE + MKK+LEAQ
Sbjct: 339 EQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQ 374
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 209 bits (533), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 94/140 (67%), Positives = 122/140 (87%), Gaps = 2/140 (1%)
Query: 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFN 60
M+RLH+KVNIIP+IAKADT+TPEEC FKKQI+ EI +HKI+IY+FP + +++ +K
Sbjct: 133 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPE--TDDEEENKLV 190
Query: 61 KNLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDL 120
K ++DR+P AVVGSNT++E++GK+VRGR+YPWG+AEVEN EHCDF LRNMLIRT++QDL
Sbjct: 191 KKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDL 250
Query: 121 KDVTSNVHYENFRCRKLAGL 140
KDVT+NVHYEN+R RKLA +
Sbjct: 251 KDVTNNVHYENYRSRKLAAV 270
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 94/139 (67%), Positives = 121/139 (87%), Gaps = 2/139 (1%)
Query: 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFN 60
M+RLH+KVNIIP+IAKADT+TPEEC FKKQI+ EI +HKI+IY+FP + +++ +K
Sbjct: 138 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPE--TDDEEENKLV 195
Query: 61 KNLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDL 120
K ++DR+P AVVGSNT++E++GK+VRGR+YPWG+AEVEN EHCDF LRNMLIRT++QDL
Sbjct: 196 KKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDL 255
Query: 121 KDVTSNVHYENFRCRKLAG 139
KDVT+NVHYEN+R RKLA
Sbjct: 256 KDVTNNVHYENYRSRKLAA 274
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 118/173 (68%), Gaps = 8/173 (4%)
Query: 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSED-DTSKF 59
M+ +H+KVNI+PVIAKADT+T +E KK+IL EI +H I+IY P S ED D +
Sbjct: 168 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQ 227
Query: 60 NKNLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQD 119
+ L+ +PF+VVGSN ++E GKKVRGR YPWG+ EVEN EH DF+ LR MLI T++QD
Sbjct: 228 TRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLI-THMQD 286
Query: 120 LKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKNPLAQMEEEKREHEAKMKKME 172
L++VT ++HYENFR +L G + +NK+ + E EA++++M+
Sbjct: 287 LQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILL------EKEAELRRMQ 333
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/138 (55%), Positives = 102/138 (73%), Gaps = 2/138 (1%)
Query: 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSED-DTSKF 59
M+ +H+KVNI+PVIAKADT+T +E KK+IL EI +H I+IY P S ED D +
Sbjct: 136 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHSIKIYHLPDAESDEDEDFKEQ 195
Query: 60 NKNLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQD 119
+ L+ +PF+VVGSN ++E GKKVRGR YPWG+ EVEN EH DF+ LR MLI T++QD
Sbjct: 196 TRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLI-THMQD 254
Query: 120 LKDVTSNVHYENFRCRKL 137
L++VT ++HYENFR +L
Sbjct: 255 LQEVTQDLHYENFRSERL 272
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 150 bits (378), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/135 (55%), Positives = 98/135 (72%), Gaps = 2/135 (1%)
Query: 4 LHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSED-DTSKFNKN 62
+H+KVNI+PVIAKADT+T +E KK+IL EI +H I+IY P S ED D + +
Sbjct: 152 IHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRL 211
Query: 63 LRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKD 122
L+ +PF+VVGSN ++E GKKVRGR YPWG+ EVEN EH DF+ LR LI T+ QDL++
Sbjct: 212 LKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTXLI-THXQDLQE 270
Query: 123 VTSNVHYENFRCRKL 137
VT ++HYENFR +L
Sbjct: 271 VTQDLHYENFRSERL 285
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/135 (55%), Positives = 98/135 (72%), Gaps = 2/135 (1%)
Query: 4 LHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSED-DTSKFNKN 62
+H+KVNI+PVIAKADT+T +E KK+IL EI +H I+IY P S ED D + +
Sbjct: 171 IHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRL 230
Query: 63 LRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKD 122
L+ +PF+VVGSN ++E GKKVRGR YPWG+ EVEN EH DF+ LR LI T+ QDL++
Sbjct: 231 LKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTXLI-THXQDLQE 289
Query: 123 VTSNVHYENFRCRKL 137
VT ++HYENFR +L
Sbjct: 290 VTQDLHYENFRSERL 304
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 97/137 (70%)
Query: 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFN 60
M+ L VNIIPVIAKADTMT EE + FK+++ E+ + IE Y +D ++ +
Sbjct: 134 MKHLSKVVNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYPQKEFDEDLEDKTEND 193
Query: 61 KNLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDL 120
K ++ +PFAVVGS+ +++GK+V GRK PWGI EVENL HC+F LR+ +IRT+LQDL
Sbjct: 194 KIRQESMPFAVVGSDKEYQVNGKRVLGRKTPWGIIEVENLNHCEFALLRDFVIRTHLQDL 253
Query: 121 KDVTSNVHYENFRCRKL 137
K+VT N+HYE +R ++L
Sbjct: 254 KEVTHNIHYETYRAKRL 270
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 111/181 (61%), Gaps = 11/181 (6%)
Query: 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFN 60
M++L KVNIIP+IAKAD ++ E FK +I SE+ + ++IYQFP + ++ ++ N
Sbjct: 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFP---TDDESVAEIN 226
Query: 61 KNLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDL 120
+ +PFAV+GS ++I K +R R+YPWG +VEN HCDF+ LR MLIR N++DL
Sbjct: 227 GTMNAHLPFAVIGSTEELKIGNKMMRARQYPWGTVQVENEAHCDFVKLREMLIRVNMEDL 286
Query: 121 KDVTSNVHYENFRCRKLAGLG-----TDGKPRLLNKNPLAQMEE---EKREHEAKMKKME 172
++ T HYE +R KL +G D KP L + A+ E E ++ E +M++M
Sbjct: 287 REQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMF 346
Query: 173 V 173
V
Sbjct: 347 V 347
>pdb|2Q01|A Chain A, Crystal Structure Of Glucuronate Isomerase From
Caulobacter Crescentus
pdb|2Q01|B Chain B, Crystal Structure Of Glucuronate Isomerase From
Caulobacter Crescentus
pdb|2Q01|C Chain C, Crystal Structure Of Glucuronate Isomerase From
Caulobacter Crescentus
Length = 497
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 20 MTPEECALFKKQILSEIAQHKIE---IYQFPPGGSSEDDTSKFNKNLRDR 66
+TPE+ LF+ Q+L+E+A+ ++ + Q PG + N + RD+
Sbjct: 279 VTPEKAELFRAQMLTEMAKMSLDDGLVMQIHPGSHRNHNVGLLNSHGRDK 328
>pdb|1AL3|A Chain A, Cofactor Binding Fragment Of Cysb From Klebsiella
Aerogenes
Length = 324
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 4 LHDKVNIIPVIA--KADTMTPEECALFKKQI-LSEIAQHKIEIYQFPPGGSSEDDTSKFN 60
L+D + ++P ++ +TPE K + + E+AQ+ + Y F G SE DT+
Sbjct: 154 LYDDLVMLPCYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNR 213
Query: 61 KNLRDRVPFAVVGSNTV 77
L R+ F ++ +
Sbjct: 214 AGLTPRIVFTATDADVI 230
>pdb|1U1Z|A Chain A, The Structure Of (3r)-Hydroxyacyl-Acp Dehydratase (Fabz)
pdb|1U1Z|B Chain B, The Structure Of (3r)-Hydroxyacyl-Acp Dehydratase (Fabz)
pdb|1U1Z|C Chain C, The Structure Of (3r)-Hydroxyacyl-Acp Dehydratase (Fabz)
pdb|1U1Z|D Chain D, The Structure Of (3r)-Hydroxyacyl-Acp Dehydratase (Fabz)
pdb|1U1Z|E Chain E, The Structure Of (3r)-Hydroxyacyl-Acp Dehydratase (Fabz)
pdb|1U1Z|F Chain F, The Structure Of (3r)-Hydroxyacyl-Acp Dehydratase (Fabz)
Length = 168
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 48 PGGSSEDDTSKFNKNLRDRVPFAVVGSNTVVEIDGKKVRGRK 89
P GS D ++ + L R PF +V ++I+GK++R K
Sbjct: 16 PRGSHXXDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYK 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,936,568
Number of Sequences: 62578
Number of extensions: 221551
Number of successful extensions: 452
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 13
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)