Query psy5592
Match_columns 257
No_of_seqs 251 out of 682
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 21:29:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3859|consensus 100.0 2.2E-64 4.8E-69 461.9 15.9 222 1-227 170-401 (406)
2 COG5019 CDC3 Septin family pro 100.0 1.2E-57 2.5E-62 428.3 22.5 212 1-225 156-368 (373)
3 KOG2655|consensus 100.0 1.5E-57 3.2E-62 429.0 17.8 201 1-217 152-353 (366)
4 PF00735 Septin: Septin; Inte 100.0 4E-52 8.7E-57 381.2 9.3 142 1-143 136-278 (281)
5 KOG1547|consensus 100.0 9.7E-48 2.1E-52 346.7 11.8 141 1-142 178-318 (336)
6 cd01850 CDC_Septin CDC/Septin. 100.0 7E-46 1.5E-50 338.3 13.3 139 1-140 137-275 (276)
7 cd04165 GTPBP1_like GTPBP1-lik 85.1 2.1 4.4E-05 38.2 5.6 70 7-76 138-207 (224)
8 cd01876 YihA_EngB The YihA (En 81.1 2.4 5.1E-05 33.4 4.0 38 7-44 110-149 (170)
9 cd04104 p47_IIGP_like p47 (47- 80.7 6.7 0.00015 33.6 7.0 17 8-24 108-124 (197)
10 KOG0804|consensus 80.6 17 0.00037 36.5 10.4 29 8-36 74-102 (493)
11 PF13851 GAS: Growth-arrest sp 80.5 29 0.00064 30.7 11.1 82 152-239 62-143 (201)
12 PF07106 TBPIP: Tat binding pr 79.7 5.1 0.00011 34.0 5.8 44 182-225 94-138 (169)
13 KOG3859|consensus 77.9 26 0.00056 33.8 10.3 66 156-222 337-403 (406)
14 PF00769 ERM: Ezrin/radixin/mo 77.6 20 0.00044 32.7 9.4 23 157-179 3-25 (246)
15 PRK13768 GTPase; Provisional 73.5 2.8 6.1E-05 37.9 2.7 28 6-33 161-188 (253)
16 KOG0981|consensus 72.3 12 0.00027 38.7 7.0 36 99-134 553-588 (759)
17 PRK00106 hypothetical protein; 72.0 62 0.0014 33.1 12.1 10 183-192 99-108 (535)
18 cd00881 GTP_translation_factor 71.2 5.9 0.00013 32.2 3.9 36 6-41 113-148 (189)
19 COG5019 CDC3 Septin family pro 70.1 35 0.00077 33.4 9.4 52 169-220 319-370 (373)
20 PF00038 Filament: Intermediat 69.2 93 0.002 28.5 14.1 78 155-232 169-259 (312)
21 PF03129 HGTP_anticodon: Antic 68.1 9.5 0.00021 28.5 4.2 63 8-78 2-64 (94)
22 KOG4466|consensus 66.5 76 0.0016 30.1 10.4 36 205-240 118-154 (291)
23 KOG2002|consensus 64.8 51 0.0011 36.1 10.0 46 169-214 838-883 (1018)
24 PF10437 Lip_prot_lig_C: Bacte 63.6 3.9 8.5E-05 30.8 1.3 14 85-98 8-21 (86)
25 PF05278 PEARLI-4: Arabidopsis 63.2 1.3E+02 0.0029 28.2 13.3 23 120-142 143-166 (269)
26 PF12072 DUF3552: Domain of un 63.1 1.1E+02 0.0023 27.0 11.7 31 166-196 56-86 (201)
27 PRK00089 era GTPase Era; Revie 63.1 29 0.00063 31.4 7.1 54 62-126 202-255 (292)
28 PRK00454 engB GTP-binding prot 62.9 14 0.0003 30.7 4.6 37 8-44 136-172 (196)
29 COG1162 Predicted GTPases [Gen 62.5 15 0.00033 34.9 5.2 118 7-129 110-255 (301)
30 PRK12289 GTPase RsgA; Reviewed 62.1 16 0.00034 35.2 5.4 95 6-107 119-239 (352)
31 PF00261 Tropomyosin: Tropomyo 61.7 1.2E+02 0.0026 27.2 12.0 69 157-226 146-220 (237)
32 PRK13793 nicotinamide-nucleoti 60.5 18 0.00038 32.3 5.0 99 9-113 33-146 (196)
33 PF00769 ERM: Ezrin/radixin/mo 60.1 1E+02 0.0022 28.1 10.0 19 158-176 11-29 (246)
34 TIGR03752 conj_TIGR03752 integ 59.8 1.5E+02 0.0032 30.1 11.7 67 151-222 58-128 (472)
35 KOG1029|consensus 57.7 1.2E+02 0.0027 32.8 11.2 7 197-203 373-379 (1118)
36 PF15397 DUF4618: Domain of un 56.4 1.7E+02 0.0038 27.3 13.4 36 100-135 12-53 (258)
37 KOG0163|consensus 56.1 81 0.0018 34.2 9.5 9 89-97 794-802 (1259)
38 PF00038 Filament: Intermediat 55.9 1.4E+02 0.0029 27.4 10.3 39 95-135 157-196 (312)
39 PF13986 DUF4224: Domain of un 53.5 20 0.00044 24.7 3.4 30 18-47 1-35 (47)
40 cd01853 Toc34_like Toc34-like 52.2 24 0.00051 32.1 4.5 18 8-25 150-167 (249)
41 PRK12704 phosphodiesterase; Pr 52.2 2E+02 0.0043 29.3 11.5 14 182-195 76-89 (520)
42 PF03962 Mnd1: Mnd1 family; I 51.7 1.7E+02 0.0036 25.7 10.7 40 197-236 104-143 (188)
43 cd00861 ProRS_anticodon_short 51.7 49 0.0011 24.3 5.5 62 8-77 4-65 (94)
44 KOG0161|consensus 51.4 1.1E+02 0.0023 36.2 10.3 53 174-226 1772-1824(1930)
45 KOG0971|consensus 51.2 1.7E+02 0.0037 32.4 11.0 30 197-226 449-478 (1243)
46 PRK10884 SH3 domain-containing 51.2 1.8E+02 0.004 26.0 12.1 65 156-225 97-161 (206)
47 COG3276 SelB Selenocysteine-sp 50.9 56 0.0012 32.8 7.2 39 7-45 103-141 (447)
48 KOG0728|consensus 48.6 77 0.0017 30.4 7.3 50 174-224 17-66 (404)
49 cd01889 SelB_euk SelB subfamil 48.2 37 0.0008 28.5 4.9 30 7-36 120-149 (192)
50 TIGR00436 era GTP-binding prot 47.6 75 0.0016 28.6 7.0 56 62-126 195-250 (270)
51 PF06637 PV-1: PV-1 protein (P 47.3 2.8E+02 0.006 27.7 11.1 18 102-121 262-279 (442)
52 PF11262 Tho2: Transcription f 46.2 1.1E+02 0.0025 28.5 8.2 68 152-223 24-91 (298)
53 PLN02734 glycyl-tRNA synthetas 45.4 26 0.00057 36.9 4.1 52 63-114 270-329 (684)
54 PF08317 Spc7: Spc7 kinetochor 45.2 2.4E+02 0.0052 26.5 10.3 22 202-223 243-264 (325)
55 cd01897 NOG NOG1 is a nucleola 44.0 26 0.00056 28.1 3.1 20 7-26 113-132 (168)
56 cd02426 Pol_gamma_b_Cterm C-te 43.3 89 0.0019 25.5 6.2 33 7-44 29-61 (128)
57 KOG1853|consensus 42.7 2.8E+02 0.0061 26.3 9.9 6 230-235 135-140 (333)
58 cd01884 EF_Tu EF-Tu subfamily. 42.4 71 0.0015 27.7 5.8 31 10-40 121-152 (195)
59 cd04171 SelB SelB subfamily. 41.9 49 0.0011 26.0 4.5 30 9-38 106-135 (164)
60 KOG2357|consensus 40.0 2E+02 0.0044 28.8 9.0 45 91-137 313-358 (440)
61 PF06936 Selenoprotein_S: Sele 39.1 1.3E+02 0.0027 26.8 6.9 6 89-94 35-40 (190)
62 PRK14894 glycyl-tRNA synthetas 38.6 46 0.001 34.1 4.6 55 6-73 435-494 (539)
63 cd01888 eIF2_gamma eIF2-gamma 37.5 64 0.0014 27.7 4.8 30 9-38 139-168 (203)
64 cd01857 HSR1_MMR1 HSR1/MMR1. 37.4 51 0.0011 26.5 3.9 35 7-45 42-76 (141)
65 PF10212 TTKRSYEDQ: Predicted 37.4 2.3E+02 0.0049 29.1 9.2 28 169-196 408-435 (518)
66 PRK12325 prolyl-tRNA synthetas 37.2 61 0.0013 31.9 5.1 60 7-78 347-410 (439)
67 KOG3088|consensus 37.2 85 0.0018 30.0 5.8 37 155-199 56-92 (313)
68 PRK12288 GTPase RsgA; Reviewed 36.9 95 0.0021 29.7 6.3 119 7-129 150-296 (347)
69 PRK00106 hypothetical protein; 36.4 4.4E+02 0.0095 27.1 11.1 7 189-195 98-104 (535)
70 PF09731 Mitofilin: Mitochondr 36.3 4.6E+02 0.01 26.4 12.1 27 163-189 262-288 (582)
71 PF11068 YlqD: YlqD protein; 36.2 2.6E+02 0.0056 23.4 9.9 60 162-221 23-85 (131)
72 cd01858 NGP_1 NGP-1. Autoanti 35.5 33 0.00071 28.0 2.6 20 7-26 39-58 (157)
73 PF12329 TMF_DNA_bd: TATA elem 35.3 1.9E+02 0.0041 21.6 7.6 15 182-196 6-20 (74)
74 PF12128 DUF3584: Protein of u 35.3 4.2E+02 0.009 29.7 11.6 16 95-110 588-603 (1201)
75 PF12709 Kinetocho_Slk19: Cent 35.2 2.2E+02 0.0048 22.4 7.8 35 162-196 30-64 (87)
76 PF14988 DUF4515: Domain of un 35.0 3.3E+02 0.0072 24.3 12.0 67 172-238 38-113 (206)
77 PF06476 DUF1090: Protein of u 34.5 2.1E+02 0.0046 23.3 7.1 34 182-215 78-112 (115)
78 cd04163 Era Era subfamily. Er 34.3 50 0.0011 25.5 3.3 27 7-33 111-138 (168)
79 PF11690 DUF3287: Protein of u 34.3 1.8E+02 0.0038 23.9 6.5 49 174-226 38-88 (109)
80 PF08317 Spc7: Spc7 kinetochor 34.3 4E+02 0.0087 25.0 10.5 14 126-140 137-150 (325)
81 cd01849 YlqF_related_GTPase Yl 33.8 58 0.0013 26.5 3.7 22 6-27 28-49 (155)
82 PF06476 DUF1090: Protein of u 33.5 2.2E+02 0.0048 23.2 7.0 43 180-222 69-112 (115)
83 COG4026 Uncharacterized protei 32.9 3.6E+02 0.0079 25.1 8.9 30 89-122 93-126 (290)
84 cd01852 AIG1 AIG1 (avrRpt2-ind 32.6 51 0.0011 27.9 3.4 42 8-49 117-162 (196)
85 PRK13729 conjugal transfer pil 32.3 2E+02 0.0042 29.3 7.7 23 203-225 97-119 (475)
86 COG3857 AddB ATP-dependent nuc 31.9 5.4E+02 0.012 28.9 11.3 184 10-214 288-498 (1108)
87 KOG0933|consensus 31.7 4.4E+02 0.0095 29.6 10.6 27 3-30 567-595 (1174)
88 KOG1029|consensus 31.7 6.3E+02 0.014 27.8 11.5 7 31-37 77-83 (1118)
89 PF06953 ArsD: Arsenical resis 31.6 68 0.0015 26.6 3.8 59 22-91 23-89 (123)
90 PF12999 PRKCSH-like: Glucosid 31.5 3.4E+02 0.0074 24.0 8.3 17 206-222 156-172 (176)
91 PTZ00327 eukaryotic translatio 31.4 83 0.0018 31.4 5.0 31 8-38 172-202 (460)
92 PF15437 PGBA_C: Plasminogen-b 31.2 2.6E+02 0.0056 21.9 7.1 18 201-218 67-84 (86)
93 KOG0804|consensus 31.0 5.9E+02 0.013 26.0 10.8 18 156-173 329-346 (493)
94 PF09730 BicD: Microtubule-ass 30.9 3.9E+02 0.0085 28.5 10.0 59 173-231 26-97 (717)
95 COG0050 TufB GTPases - transla 30.9 69 0.0015 31.2 4.1 33 9-41 130-163 (394)
96 COG1159 Era GTPase [General fu 30.1 98 0.0021 29.5 5.0 109 7-125 114-257 (298)
97 PF08614 ATG16: Autophagy prot 29.5 1.3E+02 0.0028 26.1 5.4 58 182-239 96-159 (194)
98 KOG1144|consensus 29.4 2.8E+02 0.006 30.4 8.5 32 165-196 216-247 (1064)
99 COG0441 ThrS Threonyl-tRNA syn 28.7 1E+02 0.0022 32.0 5.2 65 7-86 489-557 (589)
100 PHA00669 hypothetical protein 28.5 28 0.0006 28.6 0.9 19 82-100 23-41 (114)
101 COG3883 Uncharacterized protei 28.2 5.1E+02 0.011 24.4 10.5 59 155-215 41-99 (265)
102 TIGR00408 proS_fam_I prolyl-tR 28.0 1.6E+02 0.0034 29.4 6.3 66 7-78 284-350 (472)
103 cd00880 Era_like Era (E. coli 27.8 80 0.0017 23.8 3.4 24 6-29 103-126 (163)
104 KOG4364|consensus 27.7 5.5E+02 0.012 27.5 10.2 7 208-214 314-320 (811)
105 PF08946 Osmo_CC: Osmosensory 27.7 75 0.0016 22.2 2.8 16 201-216 24-39 (46)
106 KOG1490|consensus 27.6 38 0.00083 34.9 1.9 40 9-48 283-323 (620)
107 PF14992 TMCO5: TMCO5 family 27.4 2.6E+02 0.0056 26.5 7.2 66 174-239 18-95 (280)
108 PF02370 M: M protein repeat; 27.3 1.2E+02 0.0025 18.0 3.1 12 200-211 5-16 (21)
109 PF09726 Macoilin: Transmembra 26.2 5.8E+02 0.013 27.1 10.3 20 201-220 557-576 (697)
110 TIGR03185 DNA_S_dndD DNA sulfu 26.0 7.4E+02 0.016 25.5 11.0 24 200-223 266-289 (650)
111 PF10146 zf-C4H2: Zinc finger- 25.9 5.1E+02 0.011 23.6 13.9 92 104-225 12-103 (230)
112 KOG0245|consensus 25.6 4.3E+02 0.0094 29.7 9.3 70 150-219 355-439 (1221)
113 KOG3231|consensus 25.5 2.8E+02 0.006 24.7 6.6 27 197-223 23-49 (208)
114 KOG4661|consensus 25.4 5.4E+02 0.012 27.3 9.5 30 194-223 644-673 (940)
115 PF05266 DUF724: Protein of un 25.2 4.8E+02 0.01 23.0 11.2 16 162-177 106-121 (190)
116 PF02601 Exonuc_VII_L: Exonucl 25.2 5.4E+02 0.012 23.7 10.6 76 159-234 143-226 (319)
117 PRK14457 ribosomal RNA large s 25.1 75 0.0016 30.5 3.4 38 3-44 282-323 (345)
118 cd00862 ProRS_anticodon_zinc P 25.0 4.7E+02 0.01 22.8 8.5 67 7-78 12-79 (202)
119 PF08654 DASH_Dad2: DASH compl 24.7 2.8E+02 0.006 22.3 6.0 46 180-225 3-57 (103)
120 PF12128 DUF3584: Protein of u 24.6 9E+02 0.019 27.1 11.9 24 201-224 683-706 (1201)
121 PF04914 DltD_C: DltD C-termin 24.5 89 0.0019 26.0 3.3 40 10-49 56-98 (130)
122 cd05855 Ig_TrkB_d5 Fifth domai 24.4 1.1E+02 0.0023 23.0 3.4 40 66-105 2-56 (79)
123 PLN02595 cytochrome c oxidase 23.9 33 0.00072 27.8 0.6 11 84-94 80-90 (102)
124 PF04156 IncA: IncA protein; 23.6 4.5E+02 0.0098 22.2 10.9 36 160-196 82-117 (191)
125 TIGR01069 mutS2 MutS2 family p 23.5 4.4E+02 0.0094 28.2 8.9 12 111-122 438-449 (771)
126 PF07352 Phage_Mu_Gam: Bacteri 22.8 3.6E+02 0.0078 22.4 6.7 34 195-228 31-64 (149)
127 cd00925 Cyt_c_Oxidase_VIa Cyto 22.6 37 0.0008 26.6 0.6 11 84-94 57-67 (86)
128 TIGR00157 ribosome small subun 22.4 2E+02 0.0043 25.9 5.4 38 6-46 66-103 (245)
129 PF02841 GBP_C: Guanylate-bind 22.2 6.2E+02 0.014 23.3 8.9 20 100-119 148-167 (297)
130 COG1579 Zn-ribbon protein, pos 22.1 6.3E+02 0.014 23.3 11.0 24 200-223 93-116 (239)
131 cd01859 MJ1464 MJ1464. This f 21.9 1.1E+02 0.0023 24.7 3.3 21 7-27 41-61 (156)
132 KOG1144|consensus 21.8 9E+02 0.02 26.7 10.6 15 162-176 235-249 (1064)
133 COG4942 Membrane-bound metallo 21.8 8.2E+02 0.018 24.5 11.4 6 215-220 117-122 (420)
134 COG3365 Uncharacterized protei 21.7 76 0.0017 26.2 2.3 31 19-49 41-74 (118)
135 PF00009 GTP_EFTU: Elongation 21.7 1.7E+02 0.0037 24.4 4.6 29 7-36 122-150 (188)
136 PF15290 Syntaphilin: Golgi-lo 21.5 7.2E+02 0.016 23.8 9.9 24 152-175 61-84 (305)
137 PF07058 Myosin_HC-like: Myosi 21.2 3.9E+02 0.0085 25.9 7.2 55 152-215 108-162 (351)
138 cd00008 53EXOc 5'-3' exonuclea 21.0 1.6E+02 0.0034 26.6 4.4 55 21-76 79-134 (240)
139 TIGR00237 xseA exodeoxyribonuc 20.9 8.1E+02 0.017 24.1 11.1 37 160-196 256-292 (432)
140 cd01894 EngA1 EngA1 subfamily. 20.8 1.2E+02 0.0027 23.4 3.3 17 8-24 106-122 (157)
141 PF06705 SF-assemblin: SF-asse 20.7 6.2E+02 0.013 22.7 12.1 10 205-214 94-103 (247)
142 PRK00098 GTPase RsgA; Reviewed 20.4 1.6E+02 0.0035 27.2 4.5 38 6-46 110-147 (298)
143 KOG4715|consensus 20.3 8.2E+02 0.018 24.0 9.4 30 166-196 235-264 (410)
144 PRK00286 xseA exodeoxyribonucl 20.1 8.1E+02 0.018 23.8 11.1 36 161-196 262-297 (438)
145 PF11068 YlqD: YlqD protein; 20.0 5.2E+02 0.011 21.5 11.3 61 173-233 19-83 (131)
No 1
>KOG3859|consensus
Probab=100.00 E-value=2.2e-64 Score=461.93 Aligned_cols=222 Identities=42% Similarity=0.727 Sum_probs=210.1
Q ss_pred CCCcCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCeeeee
Q psy5592 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTVVEI 80 (257)
Q Consensus 1 MK~L~~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~~~~ 80 (257)
||+|.++||||||||||||.+.+||+.||..|+.+|..|||+||+||. ||+..++.|..++..+|||||||++.+.+
T Consensus 170 mk~LdskVNIIPvIAKaDtisK~eL~~FK~kimsEL~sngv~IYqfPt---Ddetva~~N~~mn~~lPFAVvGSte~vKv 246 (406)
T KOG3859|consen 170 MKKLDSKVNIIPVIAKADTISKEELKRFKIKIMSELVSNGVQIYQFPT---DDETVAKANSEMNHSLPFAVVGSTEEVKV 246 (406)
T ss_pred HHHHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCceeeeccc---hHHHHHHHHHHhhcCCceeEecchHhhhh
Confidence 789999999999999999999999999999999999999999999998 56677889999999999999999999999
Q ss_pred CCeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhhhhHHHhHHHHhhcCCCCCCCCCCCCCch---hhH
Q psy5592 81 DGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKNPL---AQM 157 (257)
Q Consensus 81 ~g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~~~YE~YRt~kL~~~~~~~~~~~~~~~p~---~~~ 157 (257)
+|++|++|+||||+|.|+|+.||||++||.|||+|+|+||++.||..|||.||+++|..||+.+.+ +++.|+ ..+
T Consensus 247 gnkmvraRqyPwG~v~vENE~HCDFVKLREmLirtNmedlReqTHtrhYElyRr~kL~~Mgf~dv~--~~~~p~s~qet~ 324 (406)
T KOG3859|consen 247 GNKMVKARQYPWGTVQVENELHCDFVKLREMLIRTNMEDLREQTHTRHYELYRRCKLEEMGFKDVD--PDNKPFSLQETY 324 (406)
T ss_pred hhhhhhhccCCCCceeecchhhhHHHHHHHHHccccHHHHhhhccccchHHHHHHHHHHcCCccCC--CCCCCccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997654 345554 478
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q psy5592 158 EEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEID-------MKKSLEAQIKELEEKRRGLELEISQWEQSNG 227 (257)
Q Consensus 158 eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e-------~~~~l~~q~~~leek~~~le~e~~~~~~~~~ 227 (257)
|+.+.+|...+++.|++|+|+|+++|++||..|+++|.+ +++.++++.++||+++++|++|..+|.+.+.
T Consensus 325 eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 325 EAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 8888999999999999999999999998764
No 2
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.2e-57 Score=428.32 Aligned_cols=212 Identities=42% Similarity=0.725 Sum_probs=186.8
Q ss_pred CCCcCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCC-hhhhHhhhhhhcCCCeeEeecCeeee
Q psy5592 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSE-DDTSKFNKNLRDRVPFAVVGSNTVVE 79 (257)
Q Consensus 1 MK~L~~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd-~e~~~~~~~l~~~~PFAVVgS~~~~~ 79 (257)
||+||++|||||||||||+||++||..||++|+++|..++|+||. |.+.++| ++..+.++.+++++|||||||++.+.
T Consensus 156 Mk~ls~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~-pyd~e~~~~e~~e~~~~l~~~~PFAII~S~~~~~ 234 (373)
T COG5019 156 MKRLSKRVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD-PYDPEDDEDESLEENQDLRSLIPFAIIGSNTEIE 234 (373)
T ss_pred HHHHhcccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC-CCCccccchhhHHHHHHHhhcCCeEEEeccceec
Confidence 899999999999999999999999999999999999999999998 7543333 46678899999999999999999999
Q ss_pred eCCeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhhhhHHHhHHHHhhcCCCCCCCCCCCCCchhhHHH
Q psy5592 80 IDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKNPLAQMEE 159 (257)
Q Consensus 80 ~~g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~~~YE~YRt~kL~~~~~~~~~~~~~~~p~~~~ee 159 (257)
.+|+.+|||+||||+|+|||++||||..||++||+|||+||+++|++.|||+||+++|++....+. | +
T Consensus 235 ~~~~~vrgR~YpWG~v~Idd~~hsDF~~Lr~~Li~thL~~L~~~T~~~~YE~YR~e~L~~~~~~~~-------~-----~ 302 (373)
T COG5019 235 NGGEQVRGRKYPWGVVEIDDEEHSDFKKLRNLLIRTHLQELKETTENLLYENYRTEKLSGLKNSGE-------P-----S 302 (373)
T ss_pred cCCceeeeeccCCcceecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-------h-----h
Confidence 999999999999999999999999999999999999999999999999999999999998765442 2 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy5592 160 EKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWEQS 225 (257)
Q Consensus 160 e~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~~~~~~ 225 (257)
....|.+.+...+.+++..|.+||++++++|+++|..+...+.+-..+|++..++++......+..
T Consensus 303 ~~~~~~~~~~~~~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~ 368 (373)
T COG5019 303 LKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKL 368 (373)
T ss_pred hhhccHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888899999999999999999999999999977666666666666666666655554443
No 3
>KOG2655|consensus
Probab=100.00 E-value=1.5e-57 Score=428.97 Aligned_cols=201 Identities=48% Similarity=0.813 Sum_probs=178.0
Q ss_pred CCCcCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCeeeee
Q psy5592 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTVVEI 80 (257)
Q Consensus 1 MK~L~~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~~~~ 80 (257)
||+||.+|||||||||||+||++|+..||.+|+++|..++|+||.||.+++ |++....++.|++++|||||||++.++.
T Consensus 152 Mk~l~~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~~-d~~~~~~~~~l~~~~PFAIigs~~~~e~ 230 (366)
T KOG2655|consen 152 MKKLSKKVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDES-DEELKEEEQDLKSSIPFAIIGSNTEIEE 230 (366)
T ss_pred HHHHhccccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCcc-hhhhHHHHHHHhhcCCeEEEecCceeec
Confidence 899999999999999999999999999999999999999999999998754 5556677899999999999999999988
Q ss_pred CCee-eecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhhhhHHHhHHHHhhcCCCCCCCCCCCCCchhhHHH
Q psy5592 81 DGKK-VRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKNPLAQMEE 159 (257)
Q Consensus 81 ~g~~-vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~~~YE~YRt~kL~~~~~~~~~~~~~~~p~~~~ee 159 (257)
+|+. ||||.||||+|+|||++||||.+||++||+|||+||+++|+++||||||+++|+..+..+.++
T Consensus 231 ~G~~~vrgR~YpWG~veien~~h~DF~~Lr~~Li~thl~dLk~~T~~~~YEnYR~~~L~~~~~~~~~~------------ 298 (366)
T KOG2655|consen 231 KGKKRVRGRKYPWGTVEIENPEHCDFKKLRNLLIRTHLEDLKDTTNNLLYENYRTEKLEGLLYKGENG------------ 298 (366)
T ss_pred CCceEeeceecCCceeeccCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccCCch------------
Confidence 8877 999999999999999999999999999999999999999999999999999999887655431
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5592 160 EKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLEL 217 (257)
Q Consensus 160 e~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~ 217 (257)
+|+.++.+++..|+.+|.+++++++.+|.+++.+|-+..++-.++|+++..++..
T Consensus 299 ---~~~~~~~~~e~~~~~~~~~~~~e~~~~~~~~e~~l~~~~~e~~~~l~~~~~~~~~ 353 (366)
T KOG2655|consen 299 ---EHEARLKNDELALEKVITQKVKEKEDRLRQEEEELIRRHQEMKKKLEAQMQEISD 353 (366)
T ss_pred ---hhhhhhcccchhhHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1889999999999999999999999999999998555444444445444444433
No 4
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=100.00 E-value=4e-52 Score=381.23 Aligned_cols=142 Identities=54% Similarity=0.932 Sum_probs=117.2
Q ss_pred CCCcCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCeeeee
Q psy5592 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTVVEI 80 (257)
Q Consensus 1 MK~L~~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~~~~ 80 (257)
||+||++|||||||||||+||++|++.||++|+++|+.|+|++|.|+.++. ++++...+..++..+|||||||++.++.
T Consensus 136 mk~Ls~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f~~~~~-~~~e~~~~~~~~~~~PFavi~s~~~~~~ 214 (281)
T PF00735_consen 136 MKRLSKRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDFPEDDD-DDEEIEENQKIRSMLPFAVIGSNTEIEN 214 (281)
T ss_dssp HHHHTTTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S-----------HCHHHHHHHHHC-SEEE---SSEEEE
T ss_pred HHHhcccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeeccccccc-cccccccccccccceeeEEEecceeeec
Confidence 899999999999999999999999999999999999999999999998643 3445778899999999999999999988
Q ss_pred -CCeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhhhhHHHhHHHHhhcCCCC
Q psy5592 81 -DGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSNVHYENFRCRKLAGLGTD 143 (257)
Q Consensus 81 -~g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~~~YE~YRt~kL~~~~~~ 143 (257)
+|+.|+||+||||+|+|+|++||||..||++||++||+||++.|+++|||+||+++|++.+..
T Consensus 215 ~~g~~~~gR~YpWG~vev~n~~hsDF~~Lr~~Ll~~~l~dL~~~T~~~~YE~yR~~~L~~~~~~ 278 (281)
T PF00735_consen 215 SNGKRVRGRKYPWGTVEVENPEHSDFLKLRNLLLGTHLQDLKDSTENVHYENYRTEKLSSRKNK 278 (281)
T ss_dssp -SSSEEEEEEETTEEEETT-TTTSSHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHH---
T ss_pred cCCcEEeeeecCCccccccccccccHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhchhc
Confidence 999999999999999999999999999999999999999999999999999999999987654
No 5
>KOG1547|consensus
Probab=100.00 E-value=9.7e-48 Score=346.71 Aligned_cols=141 Identities=48% Similarity=0.863 Sum_probs=132.6
Q ss_pred CCCcCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCeeeee
Q psy5592 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTVVEI 80 (257)
Q Consensus 1 MK~L~~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~~~~ 80 (257)
||+|++.||||||||||||||.+|..+||++|++++..|||++|..... ++|+|+...|..+++.+|||||||+..+.+
T Consensus 178 lkrLt~vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~f-ded~ed~~lN~kvR~~iPFAVVGsd~e~~v 256 (336)
T KOG1547|consen 178 LKRLTEVVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSF-DEDLEDKTLNDKVRESIPFAVVGSDKEIQV 256 (336)
T ss_pred HHHHhhhheeeeeEeecccccHHHHHHHHHHHHHHHHhcCccccccccc-ccchhHHHHHHHHHhhCCeEEecccceEEE
Confidence 7899999999999999999999999999999999999999999955443 346677889999999999999999999999
Q ss_pred CCeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhhhhHHHhHHHHhhcCCC
Q psy5592 81 DGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSNVHYENFRCRKLAGLGT 142 (257)
Q Consensus 81 ~g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~~~YE~YRt~kL~~~~~ 142 (257)
||+.++||+.+||+|+|||.+||+|+.||++||+||||||+++|+++|||+||..+|.+.+.
T Consensus 257 nG~~vlGRktrWg~IeVen~nhCeF~~LRdfliRtHlQdlke~Ts~iHyE~yR~krLn~~~~ 318 (336)
T KOG1547|consen 257 NGRRVLGRKTRWGIIEVENLNHCEFVLLRDFLIRTHLQDLKETTSNIHYETYRAKRLNELKE 318 (336)
T ss_pred cCeEeeccccccceEEecccccchhHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999988553
No 6
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=100.00 E-value=7e-46 Score=338.29 Aligned_cols=139 Identities=63% Similarity=1.055 Sum_probs=130.0
Q ss_pred CCCcCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCeeeee
Q psy5592 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTVVEI 80 (257)
Q Consensus 1 MK~L~~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~~~~ 80 (257)
|+.|+..|||||||+|+|+||++|+..+|+.|++.|..+||++|.||..+ +|++....+..+.+.+|||||||++.++.
T Consensus 137 lk~l~~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~Pfavi~s~~~~~~ 215 (276)
T cd01850 137 MKRLSKRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE-EDDETIEENKKLRSLIPFAVVGSNEEVEV 215 (276)
T ss_pred HHHHhccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc-ccHHHHHHHHhhccCCCcEEEecCceeec
Confidence 56778899999999999999999999999999999999999999999764 33455667888999999999999999999
Q ss_pred CCeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhhhhHHHhHHHHhhcC
Q psy5592 81 DGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSNVHYENFRCRKLAGL 140 (257)
Q Consensus 81 ~g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~~~YE~YRt~kL~~~ 140 (257)
+|+.||||+||||+|+|+||+||||.+||++||++||+||++.|+++|||+||+++|.++
T Consensus 216 ~g~~~~~R~y~WG~~~v~n~~h~df~~Lr~~l~~~~~~~l~~~t~~~~Ye~yr~~~l~~~ 275 (276)
T cd01850 216 NGKKVRGRKYPWGVVEVENEEHCDFVKLRNLLIRTHLQDLKETTHNVHYENYRTEKLSSR 275 (276)
T ss_pred CCcEEEEecCCccEEeecCcccccHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999865
No 7
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=85.07 E-value=2.1 Score=38.17 Aligned_cols=70 Identities=14% Similarity=0.093 Sum_probs=43.6
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCe
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNT 76 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~ 76 (257)
.+.+|.||.|+|.+..+++......+.+.|...|+.-+.+.....+|--....+......+|+-.|||.+
T Consensus 138 ~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavt 207 (224)
T cd04165 138 NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVT 207 (224)
T ss_pred CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCC
Confidence 3568999999999998889888888988888777765544322212111111122223345666666543
No 8
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=81.06 E-value=2.4 Score=33.35 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=28.6
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHHH--hCCCccc
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEIA--QHKIEIY 44 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l~--~~~I~iy 44 (257)
.+++|+|+.|+|.+++.+.......+...+. ..+.++|
T Consensus 110 ~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 149 (170)
T cd01876 110 GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII 149 (170)
T ss_pred CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE
Confidence 3688999999999999988888887777775 3334444
No 9
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=80.67 E-value=6.7 Score=33.60 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=14.5
Q ss_pred cceeeeeecCCCCCHHH
Q psy5592 8 VNIIPVIAKADTMTPEE 24 (257)
Q Consensus 8 VNIIPVIaKADtLT~~E 24 (257)
.++|-|++|+|.+.+.+
T Consensus 108 ~~~ilV~nK~D~~~~~~ 124 (197)
T cd04104 108 KKFYFVRTKVDRDLSNE 124 (197)
T ss_pred CCEEEEEecccchhhhh
Confidence 57899999999988755
No 10
>KOG0804|consensus
Probab=80.63 E-value=17 Score=36.50 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=14.9
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHH
Q psy5592 8 VNIIPVIAKADTMTPEECALFKKQILSEI 36 (257)
Q Consensus 8 VNIIPVIaKADtLT~~El~~fK~~I~~~l 36 (257)
.+++-|+|=--.||..++..|=--....|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I 102 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQI 102 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhh
Confidence 34555555555566666555544333333
No 11
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.54 E-value=29 Score=30.73 Aligned_cols=82 Identities=26% Similarity=0.353 Sum_probs=49.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcchH
Q psy5592 152 NPLAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWEQSNGVSMD 231 (257)
Q Consensus 152 ~p~~~~eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~~~~~~~~~~~~ 231 (257)
.|+...+++..+...+|+.-+..-. ..+.-+.+++..+.+++ .|.-+..-|+.+..+++.|+..|...-..++.
T Consensus 62 epL~~a~~e~~eL~k~L~~y~kdK~-----~L~~~k~rl~~~ek~l~-~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ 135 (201)
T PF13851_consen 62 EPLKKAEEEVEELRKQLKNYEKDKQ-----SLQNLKARLKELEKELK-DLKWEHEVLEQRFEKLEQERDELYRKFESAIQ 135 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554444444443332221 11222333333333332 36667778888999999999999988888899
Q ss_pred HHHhhhhh
Q psy5592 232 ELRRRSLE 239 (257)
Q Consensus 232 ~l~~~~l~ 239 (257)
+.++++--
T Consensus 136 evqQk~~~ 143 (201)
T PF13851_consen 136 EVQQKTGL 143 (201)
T ss_pred HHHHHHHH
Confidence 98887743
No 12
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.70 E-value=5.1 Score=34.03 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy5592 182 KVKEKKQKLKDSEID-MKKSLEAQIKELEEKRRGLELEISQWEQS 225 (257)
Q Consensus 182 kv~eke~kl~~~e~e-~~~~l~~q~~~leek~~~le~e~~~~~~~ 225 (257)
.++..+.+|...... ....|..++..|+.+..+++..+..+...
T Consensus 94 ~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 94 EVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455555555444 45667778888888888888888777764
No 13
>KOG3859|consensus
Probab=77.91 E-value=26 Score=33.78 Aligned_cols=66 Identities=26% Similarity=0.338 Sum_probs=53.1
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5592 156 QMEEE-KREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQW 222 (257)
Q Consensus 156 ~~eee-~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~~~ 222 (257)
..|++ +..+..+++..|++|+.+- ..+.+|...|+..-.+-+++|+..++.|||.+..|...++.-
T Consensus 337 rkEee~rqmFvqrvkekE~elke~E-kel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~rk~~~ 403 (406)
T KOG3859|consen 337 RKEEEMRQMFVQRVKEKEAELKEAE-KELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRRKTAA 403 (406)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 4567888999999998764 568888889998888889999999999999999988776654
No 14
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.64 E-value=20 Score=32.67 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 157 MEEEKREHEAKMKKMEVDMEQVF 179 (257)
Q Consensus 157 ~eee~~~~~~kl~k~E~em~~vF 179 (257)
.|-++.+.+.+|..+++++++.-
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~ 25 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQ 25 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777776643
No 15
>PRK13768 GTPase; Provisional
Probab=73.47 E-value=2.8 Score=37.93 Aligned_cols=28 Identities=32% Similarity=0.324 Sum_probs=24.4
Q ss_pred CCcceeeeeecCCCCCHHHHHHHHHHHH
Q psy5592 6 DKVNIIPVIAKADTMTPEECALFKKQIL 33 (257)
Q Consensus 6 ~rVNIIPVIaKADtLT~~El~~fK~~I~ 33 (257)
...++|+|++|+|.++.+++..++..+.
T Consensus 161 ~~~~~i~v~nK~D~~~~~~~~~~~~~l~ 188 (253)
T PRK13768 161 LGLPQIPVLNKADLLSEEELERILKWLE 188 (253)
T ss_pred cCCCEEEEEEhHhhcCchhHHHHHHHHh
Confidence 4579999999999999999988877766
No 16
>KOG0981|consensus
Probab=72.25 E-value=12 Score=38.71 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=27.2
Q ss_pred CCccCchHHHHHHHHHhhHHHHHHhhhhhhHHHhHH
Q psy5592 99 NLEHCDFIALRNMLIRTNLQDLKDVTSNVHYENFRC 134 (257)
Q Consensus 99 N~~HcDF~~LR~~Li~thl~dLkd~T~~~~YE~YRt 134 (257)
.|.+-=|-.|-...|..||++|-+--.-.-|-+|-+
T Consensus 553 ~~~ddLFDrLdt~~LN~hL~~lM~GLTAKVFRTYNA 588 (759)
T KOG0981|consen 553 KPGDDLFDRLDTSSLNKHLQELMDGLTAKVFRTYNA 588 (759)
T ss_pred CccchhhhhhchHHHHHHHHHHhccchhhhhhhcch
Confidence 456666999999999999999998644455555654
No 17
>PRK00106 hypothetical protein; Provisional
Probab=72.05 E-value=62 Score=33.12 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy5592 183 VKEKKQKLKD 192 (257)
Q Consensus 183 v~eke~kl~~ 192 (257)
+..+|..|.+
T Consensus 99 L~qrE~rL~q 108 (535)
T PRK00106 99 LKQIESRLTE 108 (535)
T ss_pred HHHHHHHHHH
Confidence 3333334333
No 18
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=71.17 E-value=5.9 Score=32.20 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=30.7
Q ss_pred CCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCC
Q psy5592 6 DKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKI 41 (257)
Q Consensus 6 ~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I 41 (257)
...+++.|+.|+|.+++++.......+.+.+...++
T Consensus 113 ~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 148 (189)
T cd00881 113 GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGF 148 (189)
T ss_pred CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccc
Confidence 367899999999999988888888888888877665
No 19
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=70.06 E-value=35 Score=33.40 Aligned_cols=52 Identities=27% Similarity=0.264 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5592 169 KKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEIS 220 (257)
Q Consensus 169 ~k~E~em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~ 220 (257)
++...+.-..-+++..+++++|.+.-.+|+..|+++.++|++...+|+..++
T Consensus 319 k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~~~ 370 (373)
T COG5019 319 KKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKS 370 (373)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333334444445566666666666666777777766666666666665543
No 20
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=69.21 E-value=93 Score=28.48 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH---HHHHHHHHHHHHHHHhHHHHHHH
Q psy5592 155 AQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEID----------MK---KSLEAQIKELEEKRRGLELEISQ 221 (257)
Q Consensus 155 ~~~eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e----------~~---~~l~~q~~~leek~~~le~e~~~ 221 (257)
..+.+-+..++..+.+.-.++...|..++.+..+........ ++ ..|+.++..|..+...|+..+..
T Consensus 169 ~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 169 AALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence 345666667888999999999999999999887766554444 22 22344555666666666666666
Q ss_pred HHhhhhcchHH
Q psy5592 222 WEQSNGVSMDE 232 (257)
Q Consensus 222 ~~~~~~~~~~~ 232 (257)
.+......++.
T Consensus 249 le~~~~~~~~~ 259 (312)
T PF00038_consen 249 LEQRLDEEREE 259 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66554333333
No 21
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=68.09 E-value=9.5 Score=28.45 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=39.8
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCeee
Q psy5592 8 VNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTVV 78 (257)
Q Consensus 8 VNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~~ 78 (257)
|=||||=.+ .++...+=..|.+.|..+||.+.-... +..-.......-...+||+||-+...+
T Consensus 2 v~Ii~~~~~-----~~~~~~~a~~l~~~L~~~gi~v~~d~~---~~~~~k~~~~a~~~g~p~~iiiG~~e~ 64 (94)
T PF03129_consen 2 VVIIPVGKK-----DEEIIEYAQELANKLRKAGIRVELDDS---DKSLGKQIKYADKLGIPFIIIIGEKEL 64 (94)
T ss_dssp EEEEESSCS-----HHHHHHHHHHHHHHHHHTTSEEEEESS---SSTHHHHHHHHHHTTESEEEEEEHHHH
T ss_pred EEEEEeCCC-----cHHHHHHHHHHHHHHHHCCCEEEEECC---CCchhHHHHHHhhcCCeEEEEECchhH
Confidence 557888766 578888999999999999987642221 111111222233457899887665443
No 22
>KOG4466|consensus
Probab=66.45 E-value=76 Score=30.09 Aligned_cols=36 Identities=36% Similarity=0.466 Sum_probs=23.1
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhh-cchHHHHhhhhhc
Q psy5592 205 IKELEEKRRGLELEISQWEQSNG-VSMDELRRRSLER 240 (257)
Q Consensus 205 ~~~leek~~~le~e~~~~~~~~~-~~~~~l~~~~l~~ 240 (257)
+.+||+|+++||+++--++-.+- .-...|..|.+.+
T Consensus 118 ~seleeKkrkieeeR~smDlts~~~e~~~l~~rk~rr 154 (291)
T KOG4466|consen 118 ISELEEKKRKIEEERLSMDLTSDSMESKPLYTRKLRR 154 (291)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccccccchHHhhhccc
Confidence 46799999999999887774432 2233444444443
No 23
>KOG2002|consensus
Probab=64.83 E-value=51 Score=36.11 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5592 169 KKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRG 214 (257)
Q Consensus 169 ~k~E~em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~ 214 (257)
....++.+..+++++.|...+..+.|+..+.++..|+.++.|+.+.
T Consensus 838 ~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~ 883 (1018)
T KOG2002|consen 838 RAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRERTKE 883 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777777777777766666777777777777666554
No 24
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=63.57 E-value=3.9 Score=30.83 Aligned_cols=14 Identities=43% Similarity=1.158 Sum_probs=11.4
Q ss_pred eecccCCceeeeec
Q psy5592 85 VRGRKYPWGIAEVE 98 (257)
Q Consensus 85 vrgR~YpWG~veVe 98 (257)
.+.++||||.|+|.
T Consensus 8 ~~~~rf~~G~v~v~ 21 (86)
T PF10437_consen 8 SKERRFPWGTVEVH 21 (86)
T ss_dssp EEEEEETTEEEEEE
T ss_pred eeeeEcCCceEEEE
Confidence 45689999999873
No 25
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=63.24 E-value=1.3e+02 Score=28.20 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=14.9
Q ss_pred HHHhhhhhhHHHhHHHH-hhcCCC
Q psy5592 120 LKDVTSNVHYENFRCRK-LAGLGT 142 (257)
Q Consensus 120 Lkd~T~~~~YE~YRt~k-L~~~~~ 142 (257)
+++.|.....+..++-. |..+++
T Consensus 143 ~~~LS~~dl~e~~~~l~DLesa~v 166 (269)
T PF05278_consen 143 LKELSESDLKEMIATLKDLESAKV 166 (269)
T ss_pred HhhhhHHHHHHHHHHHHHHHHcCc
Confidence 56777788888777643 444444
No 26
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=63.14 E-value=1.1e+02 Score=26.96 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 166 AKMKKMEVDMEQVFEMKVKEKKQKLKDSEID 196 (257)
Q Consensus 166 ~kl~k~E~em~~vF~~kv~eke~kl~~~e~e 196 (257)
...+.....+++-|+..++++..+|...|..
T Consensus 56 ~eakee~~~~r~~~E~E~~~~~~el~~~E~r 86 (201)
T PF12072_consen 56 LEAKEEAQKLRQELERELKERRKELQRLEKR 86 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555555555544
No 27
>PRK00089 era GTPase Era; Reviewed
Probab=63.08 E-value=29 Score=31.36 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=40.7
Q ss_pred hhhcCCCeeEeecCeeeeeCCeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhh
Q psy5592 62 NLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSN 126 (257)
Q Consensus 62 ~l~~~~PFAVVgS~~~~~~~g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~ 126 (257)
.+...+|++|-.....++.. +.-|=+.+|-|+.+.| +.++|+.+=.-|+.....
T Consensus 202 ~l~~e~p~~~~v~~~~~~~~-----~~~~i~~~i~v~~~~~------k~i~ig~~g~~i~~i~~~ 255 (292)
T PRK00089 202 LLGDELPYSVAVEIEKFEER-----GLVRIEATIYVERDSQ------KGIIIGKGGAMLKKIGTE 255 (292)
T ss_pred hCCccCCceEEEEEEEEEEC-----CeEEEEEEEEEccCCc------eeEEEeCCcHHHHHHHHH
Confidence 35678999987666655443 3445678899999999 889999888888877654
No 28
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=62.92 E-value=14 Score=30.68 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=20.8
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccc
Q psy5592 8 VNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIY 44 (257)
Q Consensus 8 VNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy 44 (257)
++++.|+.|+|.++..+.+.....+...+..++++++
T Consensus 136 ~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 136 IPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 3456666666666666655555555555544444444
No 29
>COG1162 Predicted GTPases [General function prediction only]
Probab=62.55 E-value=15 Score=34.91 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=69.3
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCe----------
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNT---------- 76 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~---------- 76 (257)
.+.-|.||.|+|.+++++... +.......+-|.++|-....+ .+........+.+.. =+++|+..
T Consensus 110 gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~~~gy~v~~~s~~~--~~~~~~l~~~l~~~~-svl~GqSGVGKSSLiN~L 184 (301)
T COG1162 110 GIEPVIVLNKIDLLDDEEAAV--KELLREYEDIGYPVLFVSAKN--GDGLEELAELLAGKI-TVLLGQSGVGKSTLINAL 184 (301)
T ss_pred CCcEEEEEEccccCcchHHHH--HHHHHHHHhCCeeEEEecCcC--cccHHHHHHHhcCCe-EEEECCCCCcHHHHHHhh
Confidence 456778899999999999987 667777788888887554221 111112222222220 11222211
Q ss_pred ---------eee-eC--Ce--eeecccCCc--eeeeecCCccCchHH--HHHHHHHhhHHHHHHhhhhhhH
Q psy5592 77 ---------VVE-ID--GK--KVRGRKYPW--GIAEVENLEHCDFIA--LRNMLIRTNLQDLKDVTSNVHY 129 (257)
Q Consensus 77 ---------~~~-~~--g~--~vrgR~YpW--G~veVeN~~HcDF~~--LR~~Li~thl~dLkd~T~~~~Y 129 (257)
.+. .. |+ ....+-||. |-.-||.|-.+-|-. +..--+..+.-|+.+....++|
T Consensus 185 ~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~~~~CkF 255 (301)
T COG1162 185 LPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAFPEFAELARQCKF 255 (301)
T ss_pred CchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHhHHHHHHhcCCCC
Confidence 111 11 22 233344544 888889998887776 6666667788888877765554
No 30
>PRK12289 GTPase RsgA; Reviewed
Probab=62.13 E-value=16 Score=35.16 Aligned_cols=95 Identities=20% Similarity=0.253 Sum_probs=52.6
Q ss_pred CCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCee--------
Q psy5592 6 DKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTV-------- 77 (257)
Q Consensus 6 ~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~-------- 77 (257)
..+++|-|+.|+|.++++++..+ ...+...|++++..... ...........+...+ .+|||+..+
T Consensus 119 ~~ip~ILVlNK~DLv~~~~~~~~----~~~~~~~g~~v~~iSA~--tg~GI~eL~~~L~~ki-~v~iG~SgVGKSSLIN~ 191 (352)
T PRK12289 119 TGLEIVLCLNKADLVSPTEQQQW----QDRLQQWGYQPLFISVE--TGIGLEALLEQLRNKI-TVVAGPSGVGKSSLINR 191 (352)
T ss_pred CCCCEEEEEEchhcCChHHHHHH----HHHHHhcCCeEEEEEcC--CCCCHHHHhhhhccce-EEEEeCCCCCHHHHHHH
Confidence 35789999999999988876443 34455678777543221 1111222333343333 567776432
Q ss_pred ------e---eeCCeeeecccC---------CceeeeecCCccCchHH
Q psy5592 78 ------V---EIDGKKVRGRKY---------PWGIAEVENLEHCDFIA 107 (257)
Q Consensus 78 ------~---~~~g~~vrgR~Y---------pWG~veVeN~~HcDF~~ 107 (257)
. .+.|+.-+||.. |=|..-||.|-...|..
T Consensus 192 L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~~l 239 (352)
T PRK12289 192 LIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPDL 239 (352)
T ss_pred HcCccccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccccc
Confidence 0 123433334332 33557788887766654
No 31
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=61.74 E-value=1.2e+02 Score=27.17 Aligned_cols=69 Identities=28% Similarity=0.405 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q psy5592 157 MEEEKREHEAKMKKMEVDME------QVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWEQSN 226 (257)
Q Consensus 157 ~eee~~~~~~kl~k~E~em~------~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~~~~~~~ 226 (257)
++++.......|+.+|.... ..|+.+++...++|+++|.... ..+.....|+...-.|+.++..|....
T Consensus 146 LE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae-~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 146 LEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAE-FAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333 2344555555555555444421 123445555555666666666655554
No 32
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=60.54 E-value=18 Score=32.34 Aligned_cols=99 Identities=20% Similarity=0.304 Sum_probs=51.7
Q ss_pred ceeeeeecCC-------CCCHHHHHHHHHHHHHHHH-hCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCeeeee
Q psy5592 9 NIIPVIAKAD-------TMTPEECALFKKQILSEIA-QHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTVVEI 80 (257)
Q Consensus 9 NIIPVIaKAD-------tLT~~El~~fK~~I~~~l~-~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~~~~ 80 (257)
.||-+|+=|+ =+|-.|...+ |+..|. ..+.++|-.|.. |...+..-.....+.+| +|++++..+..
T Consensus 33 evII~IGSA~~s~t~~NPFTa~ER~~M---I~~aL~e~~~~rv~~ipi~--D~~~~~~Wv~~V~~~v~-~v~~~n~~V~~ 106 (196)
T PRK13793 33 YVILALGSAQMERNIKNPFLAIEREQM---ILSNFSLDEQKRIRFVHVV--DVYNDEKWVKQVKSLVN-GVIEPNSKVGL 106 (196)
T ss_pred EEEEEEccCCCCCCCCCCCCHHHHHHH---HHHhcchhhcceEEEEecC--CccchhHHHHHHHHhch-hhccCCCccee
Confidence 4555565554 4777777553 334432 245677777764 22112222333444445 33334433222
Q ss_pred -----CCeeeecccCC-ceeeeecCC-ccCchHHHHHHHH
Q psy5592 81 -----DGKKVRGRKYP-WGIAEVENL-EHCDFIALRNMLI 113 (257)
Q Consensus 81 -----~g~~vrgR~Yp-WG~veVeN~-~HcDF~~LR~~Li 113 (257)
+......|.|| ||.+++++. +--.=+.+|+.++
T Consensus 107 ~g~~k~e~s~~l~~fpew~~v~~~~~r~~~SaT~IR~~~~ 146 (196)
T PRK13793 107 IGHFKDESSYYLRLFPEWVMVELDSLKDSISATPMREAYY 146 (196)
T ss_pred ecccccCceEEEEeCCCCceeecccccCccchHHHHHHHH
Confidence 22347789998 999998764 2233455555554
No 33
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=60.07 E-value=1e+02 Score=28.13 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5592 158 EEEKREHEAKMKKMEVDME 176 (257)
Q Consensus 158 eee~~~~~~kl~k~E~em~ 176 (257)
++....+++.+++...++.
T Consensus 11 e~rL~q~eee~~~a~~~L~ 29 (246)
T PF00769_consen 11 EERLRQMEEEMRRAQEALE 29 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 34
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=59.81 E-value=1.5e+02 Score=30.12 Aligned_cols=67 Identities=19% Similarity=0.351 Sum_probs=36.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5592 151 KNPLAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEID----MKKSLEAQIKELEEKRRGLELEISQW 222 (257)
Q Consensus 151 ~~p~~~~eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e----~~~~l~~q~~~leek~~~le~e~~~~ 222 (257)
.+-++.+-.+.++...+++.+..+=+ .+++.-.+|++.|.. ....++....++..++.+|..++...
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~-----~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~ 128 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENE-----ALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL 128 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544432 344555566665555 45555556666776777776665543
No 35
>KOG1029|consensus
Probab=57.70 E-value=1.2e+02 Score=32.82 Aligned_cols=7 Identities=43% Similarity=0.686 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy5592 197 MKKSLEA 203 (257)
Q Consensus 197 ~~~~l~~ 203 (257)
+.+.|+.
T Consensus 373 lekqLer 379 (1118)
T KOG1029|consen 373 LEKQLER 379 (1118)
T ss_pred HHHHHHH
Confidence 3344433
No 36
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=56.39 E-value=1.7e+02 Score=27.28 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=28.3
Q ss_pred CccCchHHHHHHHHHhhHHHHHHhhhh------hhHHHhHHH
Q psy5592 100 LEHCDFIALRNMLIRTNLQDLKDVTSN------VHYENFRCR 135 (257)
Q Consensus 100 ~~HcDF~~LR~~Li~thl~dLkd~T~~------~~YE~YRt~ 135 (257)
..||+|..=.|.=+...++|.=++|+. .-|+.|++-
T Consensus 12 ~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~ 53 (258)
T PF15397_consen 12 KKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTA 53 (258)
T ss_pred HHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Confidence 368999988888888899999888875 247777754
No 37
>KOG0163|consensus
Probab=56.12 E-value=81 Score=34.19 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=4.0
Q ss_pred cCCceeeee
Q psy5592 89 KYPWGIAEV 97 (257)
Q Consensus 89 ~YpWG~veV 97 (257)
+-.||...|
T Consensus 794 k~q~~a~sV 802 (1259)
T KOG0163|consen 794 KSQYGALSV 802 (1259)
T ss_pred Hhhhhhhhe
Confidence 334454443
No 38
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=55.89 E-value=1.4e+02 Score=27.39 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=15.6
Q ss_pred eeecCCccCchHH-HHHHHHHhhHHHHHHhhhhhhHHHhHHH
Q psy5592 95 AEVENLEHCDFIA-LRNMLIRTNLQDLKDVTSNVHYENFRCR 135 (257)
Q Consensus 95 veVeN~~HcDF~~-LR~~Li~thl~dLkd~T~~~~YE~YRt~ 135 (257)
++++.+...|+.. |++ |+.+...............|.++
T Consensus 157 ~e~~~~~~~dL~~~L~e--iR~~ye~~~~~~~~e~e~~y~~k 196 (312)
T PF00038_consen 157 VEVDQFRSSDLSAALRE--IRAQYEEIAQKNREELEEWYQSK 196 (312)
T ss_dssp ----------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccccccchhhhhh--HHHHHHHHHhhhhhhhhhhcccc
Confidence 3444444556443 344 45666666655555455555544
No 39
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=53.46 E-value=20 Score=24.69 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=23.3
Q ss_pred CCCCHHHHHHH-----HHHHHHHHHhCCCccccCC
Q psy5592 18 DTMTPEECALF-----KKQILSEIAQHKIEIYQFP 47 (257)
Q Consensus 18 DtLT~~El~~f-----K~~I~~~l~~~~I~iy~fp 47 (257)
+.||++|+..+ +....+.|..+||+++.-+
T Consensus 1 ~fLT~~El~elTG~k~~~~Q~~~L~~~Gi~~~~~~ 35 (47)
T PF13986_consen 1 EFLTDEELQELTGYKRPSKQIRWLRRNGIPFVVRA 35 (47)
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHCCCeeEECC
Confidence 47999999874 5567778999999887544
No 40
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=52.19 E-value=24 Score=32.14 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.4
Q ss_pred cceeeeeecCCCCCHHHH
Q psy5592 8 VNIIPVIAKADTMTPEEC 25 (257)
Q Consensus 8 VNIIPVIaKADtLT~~El 25 (257)
.|+|.|+.++|+++|++.
T Consensus 150 ~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 150 RNAIVVLTHAASSPPDGL 167 (249)
T ss_pred hCEEEEEeCCccCCCCCC
Confidence 478888888888887765
No 41
>PRK12704 phosphodiesterase; Provisional
Probab=52.16 E-value=2e+02 Score=29.26 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy5592 182 KVKEKKQKLKDSEI 195 (257)
Q Consensus 182 kv~eke~kl~~~e~ 195 (257)
.+++.+++|.+.|.
T Consensus 76 e~~~~e~~L~qrE~ 89 (520)
T PRK12704 76 ELRERRNELQKLEK 89 (520)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 42
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.73 E-value=1.7e+02 Score=25.70 Aligned_cols=40 Identities=15% Similarity=0.424 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcchHHHHhh
Q psy5592 197 MKKSLEAQIKELEEKRRGLELEISQWEQSNGVSMDELRRR 236 (257)
Q Consensus 197 ~~~~l~~q~~~leek~~~le~e~~~~~~~~~~~~~~l~~~ 236 (257)
-+..+-+++.+|+.+..+|+.++..+....+..++.+...
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~ 143 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEE 143 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3445667788888888889998888887777777777653
No 43
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=51.67 E-value=49 Score=24.29 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=35.5
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCee
Q psy5592 8 VNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTV 77 (257)
Q Consensus 8 VNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~ 77 (257)
|=|+||=.+ + ++....-..|...|..+||.+.--+.. ..-.......-....||.||-+...
T Consensus 4 v~i~p~~~~-~----~~~~~~a~~la~~Lr~~g~~v~~d~~~---~~l~k~i~~a~~~g~~~~iiiG~~e 65 (94)
T cd00861 4 VVIIPMNMK-D----EVQQELAEKLYAELQAAGVDVLLDDRN---ERPGVKFADADLIGIPYRIVVGKKS 65 (94)
T ss_pred EEEEEcCCC-c----HHHHHHHHHHHHHHHHCCCEEEEECCC---CCcccchhHHHhcCCCEEEEECCch
Confidence 457775544 2 566677788999999999988531111 1001111122245689987655443
No 44
>KOG0161|consensus
Probab=51.37 E-value=1.1e+02 Score=36.19 Aligned_cols=53 Identities=26% Similarity=0.355 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q psy5592 174 DMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWEQSN 226 (257)
Q Consensus 174 em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~~~~~~~ 226 (257)
.+++.-+..|++...+|.+.|.-....-..++..||.+++.||.+...=....
T Consensus 1772 ~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~~~~ 1824 (1930)
T KOG0161|consen 1772 RLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQRRK 1824 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhhhhh
Confidence 45556677777777888777777555555778888888888887765544444
No 45
>KOG0971|consensus
Probab=51.23 E-value=1.7e+02 Score=32.39 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q psy5592 197 MKKSLEAQIKELEEKRRGLELEISQWEQSN 226 (257)
Q Consensus 197 ~~~~l~~q~~~leek~~~le~e~~~~~~~~ 226 (257)
|-.+|....-+||+|.+.||+++.++++-.
T Consensus 449 MV~qLtdknlnlEekVklLeetv~dlEale 478 (1243)
T KOG0971|consen 449 MVEQLTDKNLNLEEKVKLLEETVGDLEALE 478 (1243)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence 777787777889999999999988888654
No 46
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.21 E-value=1.8e+02 Score=25.99 Aligned_cols=65 Identities=12% Similarity=0.245 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy5592 156 QMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWEQS 225 (257)
Q Consensus 156 ~~eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~~~~~~ 225 (257)
.++.+.....++|..+ .+-+.+...+..+++.+++....+ |+++..+|.++...+..+....+..
T Consensus 97 ~le~el~~l~~~l~~~----~~~~~~~~~~l~~~~~~~~~~~~~-L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 97 DLENQVKTLTDKLNNI----DNTWNQRTAEMQQKVAQSDSVING-LKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443 344556666666666665544222 4444444444444444444444444
No 47
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=50.86 E-value=56 Score=32.77 Aligned_cols=39 Identities=28% Similarity=0.328 Sum_probs=33.5
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCcccc
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQ 45 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~ 45 (257)
.-|.|-||+|+|...+..+...-++|...+.-.+.++|.
T Consensus 103 i~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~ 141 (447)
T COG3276 103 IKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFK 141 (447)
T ss_pred CCceEEEEeccccccHHHHHHHHHHHHhhcccccccccc
Confidence 448899999999999999999999999998866777743
No 48
>KOG0728|consensus
Probab=48.63 E-value=77 Score=30.36 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy5592 174 DMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWEQ 224 (257)
Q Consensus 174 em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~~~~~ 224 (257)
.+++.|.+|+.+-+.++.+.-..+ +.|++|+.+|-.+.|-|.+|+.-+..
T Consensus 17 ~~~~y~~~ki~~~~~~v~~kt~nl-rrleaqrneln~kvr~lreel~~lqe 66 (404)
T KOG0728|consen 17 GLRQYYLQKIEELQLQVAEKTQNL-RRLEAQRNELNAKVRLLREELQLLQE 66 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 367788888888777775543334 44888999999998888888766543
No 49
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=48.22 E-value=37 Score=28.51 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=22.3
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHH
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEI 36 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l 36 (257)
.+++|-|+.|.|.++.++.......+.+.+
T Consensus 120 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l 149 (192)
T cd01889 120 CKKLIVVLNKIDLIPEEERERKIEKMKKKL 149 (192)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence 358899999999998877666555555544
No 50
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=47.57 E-value=75 Score=28.63 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=39.0
Q ss_pred hhhcCCCeeEeecCeeeeeCCeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhh
Q psy5592 62 NLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSN 126 (257)
Q Consensus 62 ~l~~~~PFAVVgS~~~~~~~g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~ 126 (257)
.+...+|+++-.....++.... +.-+=..+|-|+.+.| +.++|+.+=.-||.....
T Consensus 195 ~~~~e~p~~~~~~~~~~~~~~~---~~~~i~~~i~v~~~s~------k~iiig~~g~~ik~i~~~ 250 (270)
T TIGR00436 195 YTKEEIPHSVRVEIERKSFNEK---GLLKIHALISVERESQ------KKIIIGKNGSMIKAIGIA 250 (270)
T ss_pred hcccccCceEEEEEEEEEECCC---CeEEEEEEEEECcCCc------eeEEEcCCcHHHHHHHHH
Confidence 4467899998776665554210 1223557899999999 788888888888877643
No 51
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=47.28 E-value=2.8e+02 Score=27.71 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=11.1
Q ss_pred cCchHHHHHHHHHhhHHHHH
Q psy5592 102 HCDFIALRNMLIRTNLQDLK 121 (257)
Q Consensus 102 HcDF~~LR~~Li~thl~dLk 121 (257)
-||+..+|.. ++||-.+.
T Consensus 262 ~~el~siRr~--Cd~lP~~m 279 (442)
T PF06637_consen 262 GPELESIRRT--CDHLPKIM 279 (442)
T ss_pred cchHHHHHHH--HhhchHHH
Confidence 3677777775 45665544
No 52
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=46.17 E-value=1.1e+02 Score=28.52 Aligned_cols=68 Identities=22% Similarity=0.327 Sum_probs=49.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5592 152 NPLAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWE 223 (257)
Q Consensus 152 ~p~~~~eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~~~~ 223 (257)
-|.+.++++....+..++. +...-..+.+.+..++......+...+..|...-+.=+..|..+...|-
T Consensus 24 vp~~~Y~~ei~~L~~~i~~----~~~~~~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf 91 (298)
T PF11262_consen 24 VPKELYDEEIERLEKEISQ----MSRATISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWF 91 (298)
T ss_pred CCHHHHHHHHHHHHHHHHH----hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4778888888766666665 3333445556666667666666777788888888888888999999998
No 53
>PLN02734 glycyl-tRNA synthetase
Probab=45.41 E-value=26 Score=36.86 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=36.0
Q ss_pred hhcCCCeeEe--ecCe--eeeeCCeeeecccCCceeee----ecCCccCchHHHHHHHHH
Q psy5592 63 LRDRVPFAVV--GSNT--VVEIDGKKVRGRKYPWGIAE----VENLEHCDFIALRNMLIR 114 (257)
Q Consensus 63 l~~~~PFAVV--gS~~--~~~~~g~~vrgR~YpWG~ve----VeN~~HcDF~~LR~~Li~ 114 (257)
.+..+||||. |..- +|...+-..|.|.|.=.-+| .++.+|..|....++-+.
T Consensus 270 ~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~Fv~P~~k~h~~f~~v~~~~l~ 329 (684)
T PLN02734 270 NGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPEDKSHPKFSEVADLEFL 329 (684)
T ss_pred cCCCCCeeeeeccHhhhcccCcccceeeechhhhhhhheecCcccccccchhhhhhhhhh
Confidence 3578999984 4321 34444558999999876544 457789999888777654
No 54
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=45.19 E-value=2.4e+02 Score=26.53 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q psy5592 202 EAQIKELEEKRRGLELEISQWE 223 (257)
Q Consensus 202 ~~q~~~leek~~~le~e~~~~~ 223 (257)
+..+.++.+++.++..+++..+
T Consensus 243 ~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 243 EEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555
No 55
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=44.04 E-value=26 Score=28.09 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=13.9
Q ss_pred CcceeeeeecCCCCCHHHHH
Q psy5592 7 KVNIIPVIAKADTMTPEECA 26 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~ 26 (257)
..++|.|+.|+|..+..++.
T Consensus 113 ~~pvilv~NK~Dl~~~~~~~ 132 (168)
T cd01897 113 NKPVIVVLNKIDLLTFEDLS 132 (168)
T ss_pred cCCeEEEEEccccCchhhHH
Confidence 46777778888877665544
No 56
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=43.28 E-value=89 Score=25.53 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.8
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccc
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIY 44 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy 44 (257)
.|-|||+ . .+ .+++..+=..|.+.|..+||.+.
T Consensus 29 qV~Iipi-~-~~---~~~~~~~a~~l~~~L~~~gi~v~ 61 (128)
T cd02426 29 KVAIDCG-K-GD---TAELRDLCQGLKNELREAGLSVW 61 (128)
T ss_pred EEEEEec-c-CC---hHHHHHHHHHHHHHHHHcCCEEE
Confidence 4678898 2 22 37888888899999999999984
No 57
>KOG1853|consensus
Probab=42.69 E-value=2.8e+02 Score=26.32 Aligned_cols=6 Identities=0% Similarity=0.673 Sum_probs=2.7
Q ss_pred hHHHHh
Q psy5592 230 MDELRR 235 (257)
Q Consensus 230 ~~~l~~ 235 (257)
++++-+
T Consensus 135 leDfeq 140 (333)
T KOG1853|consen 135 LEDFEQ 140 (333)
T ss_pred HHHHHH
Confidence 444443
No 58
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=42.40 E-value=71 Score=27.66 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=20.6
Q ss_pred eeeeeecCCCCCHHHHH-HHHHHHHHHHHhCC
Q psy5592 10 IIPVIAKADTMTPEECA-LFKKQILSEIAQHK 40 (257)
Q Consensus 10 IIPVIaKADtLT~~El~-~fK~~I~~~l~~~~ 40 (257)
+|-||.|.|.+..++.. ..++.|...|...|
T Consensus 121 iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g 152 (195)
T cd01884 121 IVVFLNKADMVDDEELLELVEMEVRELLSKYG 152 (195)
T ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 67788888887655543 35666777766654
No 59
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=41.94 E-value=49 Score=25.98 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=20.5
Q ss_pred ceeeeeecCCCCCHHHHHHHHHHHHHHHHh
Q psy5592 9 NIIPVIAKADTMTPEECALFKKQILSEIAQ 38 (257)
Q Consensus 9 NIIPVIaKADtLT~~El~~fK~~I~~~l~~ 38 (257)
++|-|+.|+|.............+.+.+..
T Consensus 106 ~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 135 (164)
T cd04171 106 RGLVVLTKADLVDEDWLELVEEEIRELLAG 135 (164)
T ss_pred cEEEEEECccccCHHHHHHHHHHHHHHHHh
Confidence 788888999987765555555555555554
No 60
>KOG2357|consensus
Probab=40.02 E-value=2e+02 Score=28.83 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=31.6
Q ss_pred CceeeeecCCccCchHH-HHHHHHHhhHHHHHHhhhhhhHHHhHHHHh
Q psy5592 91 PWGIAEVENLEHCDFIA-LRNMLIRTNLQDLKDVTSNVHYENFRCRKL 137 (257)
Q Consensus 91 pWG~veVeN~~HcDF~~-LR~~Li~thl~dLkd~T~~~~YE~YRt~kL 137 (257)
-||+...+--.-|+|.. |+ ++..||.+++..++-+.|=.=+..+|
T Consensus 313 E~~t~~P~~~~~~l~~fnlp--~~~k~me~iv~i~~li~ylid~~~~~ 358 (440)
T KOG2357|consen 313 EGETKLPEAKRMLLFKFNLP--LLNKDMEDIVEILNLIFYLIDKAKKL 358 (440)
T ss_pred cccccCchhhhhheeccCcc--chHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47776666555677653 33 67789999999999888865555544
No 61
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=39.05 E-value=1.3e+02 Score=26.82 Aligned_cols=6 Identities=50% Similarity=1.138 Sum_probs=0.0
Q ss_pred cCCcee
Q psy5592 89 KYPWGI 94 (257)
Q Consensus 89 ~YpWG~ 94 (257)
.|.|=+
T Consensus 35 ~yGWyi 40 (190)
T PF06936_consen 35 SYGWYI 40 (190)
T ss_dssp ------
T ss_pred HhCHHH
Confidence 455633
No 62
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=38.57 E-value=46 Score=34.10 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=35.6
Q ss_pred CCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCC-ccccCCCCCCCChhhhHhhhhhh----cCCCeeEee
Q psy5592 6 DKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKI-EIYQFPPGGSSEDDTSKFNKNLR----DRVPFAVVG 73 (257)
Q Consensus 6 ~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I-~iy~fp~~~~dd~e~~~~~~~l~----~~~PFAVVg 73 (257)
-+|-||||..+.+- +..+=+.|.+.|..+|| .+.- |+.+ .....++ ..+||+||-
T Consensus 435 vQVaVLPLs~~~~~-----l~eyAkeI~~~L~~~Gi~rv~~------Ddse--sIGKKyRraDeiGiPy~ITV 494 (539)
T PRK14894 435 IKVAVFPLKRNHEG-----LVATAKAVRRQLQVGGRMRTVY------DDTG--AIGKLYRRQDEIGTPFCITV 494 (539)
T ss_pred ceEEEEeccccccc-----hHHHHHHHHHHHHHCCCceEEE------cCCC--CHhHHHHhhhccCCCEEEEE
Confidence 36889999854432 55666789999999998 6631 2221 2333333 358999887
No 63
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=37.51 E-value=64 Score=27.66 Aligned_cols=30 Identities=27% Similarity=0.170 Sum_probs=22.5
Q ss_pred ceeeeeecCCCCCHHHHHHHHHHHHHHHHh
Q psy5592 9 NIIPVIAKADTMTPEECALFKKQILSEIAQ 38 (257)
Q Consensus 9 NIIPVIaKADtLT~~El~~fK~~I~~~l~~ 38 (257)
++|-|+.|.|.....+.....+.+.+.+..
T Consensus 139 ~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~ 168 (203)
T cd01888 139 HIIIVQNKIDLVKEEQALENYEQIKKFVKG 168 (203)
T ss_pred cEEEEEEchhccCHHHHHHHHHHHHHHHhc
Confidence 678899999998877776666666666654
No 64
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=37.45 E-value=51 Score=26.49 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=24.2
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCcccc
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQ 45 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~ 45 (257)
..++|.|+.|+|.+.++++.. ..+.+...+++++.
T Consensus 42 ~k~~iivlNK~DL~~~~~~~~----~~~~~~~~~~~ii~ 76 (141)
T cd01857 42 RKKNILLLNKADLLTEEQRKA----WAEYFKKEGIVVVF 76 (141)
T ss_pred CCcEEEEEechhcCCHHHHHH----HHHHHHhcCCeEEE
Confidence 568999999999988776543 33445566666553
No 65
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=37.41 E-value=2.3e+02 Score=29.13 Aligned_cols=28 Identities=11% Similarity=0.251 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 169 KKMEVDMEQVFEMKVKEKKQKLKDSEID 196 (257)
Q Consensus 169 ~k~E~em~~vF~~kv~eke~kl~~~e~e 196 (257)
...|..++..|+.||.+.-..++.++..
T Consensus 408 esRE~LIk~~Y~~RI~eLt~qlQ~adSK 435 (518)
T PF10212_consen 408 ESREQLIKSYYMSRIEELTSQLQHADSK 435 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778999999999999999888865
No 66
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=37.22 E-value=61 Score=31.85 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=37.1
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhh----hcCCCeeEeecCeee
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNL----RDRVPFAVVGSNTVV 78 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l----~~~~PFAVVgS~~~~ 78 (257)
.|=|||+ .+.| ++....=..|...|..+||.+.--. . +.....++ ...+||.||-+...+
T Consensus 347 qV~Iipi-~~~~----~~~~~~a~~i~~~L~~~Gi~v~~D~-----~--~~~lg~ki~~a~~~giP~~iiVG~~e~ 410 (439)
T PRK12325 347 KVGIINL-KQGD----EACDAACEKLYAALSAAGIDVLYDD-----T--DERPGAKFATMDLIGLPWQIIVGPKGL 410 (439)
T ss_pred EEEEEec-CCCC----HHHHHHHHHHHHHHHHCCCEEEEEC-----C--CCCHhHHHHHHHHcCCCEEEEECCccc
Confidence 4557887 2222 5666777899999999999986211 1 11223333 246899887665544
No 67
>KOG3088|consensus
Probab=37.19 E-value=85 Score=30.00 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 155 AQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKK 199 (257)
Q Consensus 155 ~~~eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e~~~ 199 (257)
++.-.+....+++|.+.|+|+++ |+++|+..|++|..
T Consensus 56 ~~~a~~~~~kq~eL~~rqeEL~R--------ke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 56 STQAKDLAKKQAELLKKQEELRR--------KEQELDRRERALAR 92 (313)
T ss_pred cchhhHHHHHHHHHHHHHHHHHH--------HHHHHhHHHHHHhh
Confidence 34455555566777777777665 77777766666544
No 68
>PRK12288 GTPase RsgA; Reviewed
Probab=36.93 E-value=95 Score=29.71 Aligned_cols=119 Identities=14% Similarity=0.250 Sum_probs=60.3
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCee---------
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTV--------- 77 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~--------- 77 (257)
.+++|=|+.|+|.+++.+..... .+...+...|+++|..... ..+........|...+ =++||+..+
T Consensus 150 ~i~~VIVlNK~DL~~~~~~~~~~-~~~~~y~~~g~~v~~vSA~--tg~GideL~~~L~~ki-~~~vG~sgVGKSTLiN~L 225 (347)
T PRK12288 150 GIEPLIVLNKIDLLDDEGRAFVN-EQLDIYRNIGYRVLMVSSH--TGEGLEELEAALTGRI-SIFVGQSGVGKSSLINAL 225 (347)
T ss_pred CCCEEEEEECccCCCcHHHHHHH-HHHHHHHhCCCeEEEEeCC--CCcCHHHHHHHHhhCC-EEEECCCCCCHHHHHHHh
Confidence 46788899999999876543333 3334556677777643321 1111112222232221 345554321
Q ss_pred -----e---eeCCeeeec-------ccCCc--eeeeecCCccCchHHH--HHHHHHhhHHHHHHhhhhhhH
Q psy5592 78 -----V---EIDGKKVRG-------RKYPW--GIAEVENLEHCDFIAL--RNMLIRTNLQDLKDVTSNVHY 129 (257)
Q Consensus 78 -----~---~~~g~~vrg-------R~YpW--G~veVeN~~HcDF~~L--R~~Li~thl~dLkd~T~~~~Y 129 (257)
. ++.+..-+| +-|+. |..-++.|-...|-.. -.-=|..+.-|+.+....+.|
T Consensus 226 l~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~ei~~~~~~CrF 296 (347)
T PRK12288 226 LPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFVEFRDYLGTCKF 296 (347)
T ss_pred ccccceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhHHHHHHhcCCCC
Confidence 0 111211122 22443 6677899988888753 212244566666665554444
No 69
>PRK00106 hypothetical protein; Provisional
Probab=36.45 E-value=4.4e+02 Score=27.13 Aligned_cols=7 Identities=43% Similarity=0.444 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy5592 189 KLKDSEI 195 (257)
Q Consensus 189 kl~~~e~ 195 (257)
+|.+.|.
T Consensus 98 rL~qrE~ 104 (535)
T PRK00106 98 ELKQIES 104 (535)
T ss_pred HHHHHHH
Confidence 3333333
No 70
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=36.27 E-value=4.6e+02 Score=26.38 Aligned_cols=27 Identities=11% Similarity=0.342 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 163 EHEAKMKKMEVDMEQVFEMKVKEKKQK 189 (257)
Q Consensus 163 ~~~~kl~k~E~em~~vF~~kv~eke~k 189 (257)
....+|..+...........++++..+
T Consensus 262 ~L~~~l~~l~~~~~~~l~~~L~~q~~e 288 (582)
T PF09731_consen 262 ALQKELAELKEEEEEELERALEEQREE 288 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333444444433
No 71
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=36.22 E-value=2.6e+02 Score=23.39 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5592 162 REHEAKMKKMEVDMEQV-FEMKVKEKKQKLK--DSEIDMKKSLEAQIKELEEKRRGLELEISQ 221 (257)
Q Consensus 162 ~~~~~kl~k~E~em~~v-F~~kv~eke~kl~--~~e~e~~~~l~~q~~~leek~~~le~e~~~ 221 (257)
+...+.+...+.+|.+. |+.+=...+.+-+ ..-..++..++.++.++.+++++|...+..
T Consensus 23 ~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~q 85 (131)
T PF11068_consen 23 QELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQ 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555552 2222222221111 222336666677777777777776555443
No 72
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=35.54 E-value=33 Score=28.01 Aligned_cols=20 Identities=25% Similarity=0.229 Sum_probs=16.7
Q ss_pred CcceeeeeecCCCCCHHHHH
Q psy5592 7 KVNIIPVIAKADTMTPEECA 26 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~ 26 (257)
.+++|.||.|+|.+.++++.
T Consensus 39 ~~p~ilVlNKiDl~~~~~~~ 58 (157)
T cd01858 39 HKHLIFVLNKCDLVPTWVTA 58 (157)
T ss_pred CCCEEEEEEchhcCCHHHHH
Confidence 47899999999999877653
No 73
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=35.33 E-value=1.9e+02 Score=21.62 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy5592 182 KVKEKKQKLKDSEID 196 (257)
Q Consensus 182 kv~eke~kl~~~e~e 196 (257)
+++||...+.+.-.|
T Consensus 6 ~l~EKDe~Ia~L~eE 20 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEE 20 (74)
T ss_pred HHHhHHHHHHHHHHH
Confidence 444444444444333
No 74
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=35.28 E-value=4.2e+02 Score=29.66 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=10.3
Q ss_pred eeecCCccCchHHHHH
Q psy5592 95 AEVENLEHCDFIALRN 110 (257)
Q Consensus 95 veVeN~~HcDF~~LR~ 110 (257)
+++.+-+.+||..-..
T Consensus 588 LdL~~I~~pd~~~~ee 603 (1201)
T PF12128_consen 588 LDLSAIDVPDYAASEE 603 (1201)
T ss_pred eehhhcCCchhhcChH
Confidence 5777777777764443
No 75
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=35.21 E-value=2.2e+02 Score=22.39 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 162 REHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEID 196 (257)
Q Consensus 162 ~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e 196 (257)
..|+.|++.+-...+.-|+.+|.+-+.++.....|
T Consensus 30 sKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E 64 (87)
T PF12709_consen 30 SKHETKVKALKKSYEARWEKKVDELENENKALKRE 64 (87)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666665555566666666666666554444
No 76
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=34.96 E-value=3.3e+02 Score=24.28 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------HHHHHHHHHHHhHHHHHHHHHhhhhcchHHHHhhhh
Q psy5592 172 EVDMEQVFEMKVKEKKQKLKDSEID---MKKSLE------AQIKELEEKRRGLELEISQWEQSNGVSMDELRRRSL 238 (257)
Q Consensus 172 E~em~~vF~~kv~eke~kl~~~e~e---~~~~l~------~q~~~leek~~~le~e~~~~~~~~~~~~~~l~~~~l 238 (257)
-.++..-|..++.+.+..|.+.+.+ |+..|+ ......|.+...|+.++..-.......+.++..+-|
T Consensus 38 r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl 113 (206)
T PF14988_consen 38 RQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFL 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555554444 222221 233344445555555555555555555555554444
No 77
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=34.55 E-value=2.1e+02 Score=23.32 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhH
Q psy5592 182 KVKEKKQKLKDSEID-MKKSLEAQIKELEEKRRGL 215 (257)
Q Consensus 182 kv~eke~kl~~~e~e-~~~~l~~q~~~leek~~~l 215 (257)
+|.|.+..|+++... =.+...+..++|.|.+..|
T Consensus 78 kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 78 KVAEREAELKEAQAKGDSDKIAKRQKKLAEAKAEL 112 (115)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 444444444444333 1123333444455554444
No 78
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=34.34 E-value=50 Score=25.50 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=20.7
Q ss_pred CcceeeeeecCCCC-CHHHHHHHHHHHH
Q psy5592 7 KVNIIPVIAKADTM-TPEECALFKKQIL 33 (257)
Q Consensus 7 rVNIIPVIaKADtL-T~~El~~fK~~I~ 33 (257)
.+++|.|+.|+|.. ++.++..+...+.
T Consensus 111 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~ 138 (168)
T cd04163 111 KTPVILVLNKIDLVKDKEDLLPLLEKLK 138 (168)
T ss_pred CCCEEEEEEchhccccHHHHHHHHHHHH
Confidence 47899999999998 6777766655554
No 79
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=34.33 E-value=1.8e+02 Score=23.85 Aligned_cols=49 Identities=31% Similarity=0.455 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHhhh
Q psy5592 174 DMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKEL--EEKRRGLELEISQWEQSN 226 (257)
Q Consensus 174 em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~l--eek~~~le~e~~~~~~~~ 226 (257)
+--..|.++|..+-+++ .+.++.|.+.+..| |-+.+.||..-..|+..+
T Consensus 38 ~ea~~F~~kV~~qH~~~----~~e~r~L~kKi~~l~veRkmr~Les~p~~W~~~g 88 (109)
T PF11690_consen 38 KEAYDFIDKVVDQHQRY----CDERRKLRKKIQDLRVERKMRALESHPFDWERRG 88 (109)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHhc
Confidence 33457899999999988 44556666666666 888888888888887665
No 80
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=34.27 E-value=4e+02 Score=25.05 Aligned_cols=14 Identities=43% Similarity=0.819 Sum_probs=8.9
Q ss_pred hhhHHHhHHHHhhcC
Q psy5592 126 NVHYENFRCRKLAGL 140 (257)
Q Consensus 126 ~~~YE~YRt~kL~~~ 140 (257)
..+|| ||...+.++
T Consensus 137 ~~WYe-WR~~ll~gl 150 (325)
T PF08317_consen 137 KMWYE-WRMQLLEGL 150 (325)
T ss_pred HHHHH-HHHHHHHHH
Confidence 35665 888776553
No 81
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=33.77 E-value=58 Score=26.55 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=17.7
Q ss_pred CCcceeeeeecCCCCCHHHHHH
Q psy5592 6 DKVNIIPVIAKADTMTPEECAL 27 (257)
Q Consensus 6 ~rVNIIPVIaKADtLT~~El~~ 27 (257)
...++|.|+.|+|.++.+++..
T Consensus 28 ~~~p~IiVlNK~Dl~~~~~~~~ 49 (155)
T cd01849 28 KGKKLILVLNKADLVPKEVLRK 49 (155)
T ss_pred CCCCEEEEEechhcCCHHHHHH
Confidence 3578999999999988876543
No 82
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=33.51 E-value=2.2e+02 Score=23.19 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHH
Q psy5592 180 EMKVKEKKQKLKDSEIDMKKSLEA-QIKELEEKRRGLELEISQW 222 (257)
Q Consensus 180 ~~kv~eke~kl~~~e~e~~~~l~~-q~~~leek~~~le~e~~~~ 222 (257)
+.+|.++++++.+.+.||++.... .-.++..+.+.|.+....+
T Consensus 69 q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 69 QQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAEAKAEL 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666655543 2244454555555544433
No 83
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=32.93 E-value=3.6e+02 Score=25.14 Aligned_cols=30 Identities=40% Similarity=0.660 Sum_probs=18.9
Q ss_pred cCCceeeeecCCccCchHH----HHHHHHHhhHHHHHH
Q psy5592 89 KYPWGIAEVENLEHCDFIA----LRNMLIRTNLQDLKD 122 (257)
Q Consensus 89 ~YpWG~veVeN~~HcDF~~----LR~~Li~thl~dLkd 122 (257)
+.|.|- +-+|-|.-. |++.|++.-|+-|.-
T Consensus 93 K~PiGH----DvEhiD~elvrkEl~nAlvRAGLktL~~ 126 (290)
T COG4026 93 KIPIGH----DVEHIDVELVRKELKNALVRAGLKTLQR 126 (290)
T ss_pred ccCCCC----CccccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 456663 566778754 566777766665543
No 84
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=32.58 E-value=51 Score=27.90 Aligned_cols=42 Identities=7% Similarity=0.056 Sum_probs=30.7
Q ss_pred cceeeeeecCCCCCHHHHHHH----HHHHHHHHHhCCCccccCCCC
Q psy5592 8 VNIIPVIAKADTMTPEECALF----KKQILSEIAQHKIEIYQFPPG 49 (257)
Q Consensus 8 VNIIPVIaKADtLT~~El~~f----K~~I~~~l~~~~I~iy~fp~~ 49 (257)
-|+|.|+.++|.|...++..+ +..++..++..|...+.|...
T Consensus 117 ~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~ 162 (196)
T cd01852 117 DHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNK 162 (196)
T ss_pred hcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCC
Confidence 478888999998887666654 456677777778887777654
No 85
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.33 E-value=2e+02 Score=29.29 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhh
Q psy5592 203 AQIKELEEKRRGLELEISQWEQS 225 (257)
Q Consensus 203 ~q~~~leek~~~le~e~~~~~~~ 225 (257)
.+...++++...|+.|+..+..+
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555554443
No 86
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=31.87 E-value=5.4e+02 Score=28.95 Aligned_cols=184 Identities=17% Similarity=0.197 Sum_probs=93.5
Q ss_pred eeeeeecCCCCCHHHHH-------HHHHHHHHHHHhCCCccccCCCCCCCChhhhH-hhhhhh--cCCCeeEeecCeeee
Q psy5592 10 IIPVIAKADTMTPEECA-------LFKKQILSEIAQHKIEIYQFPPGGSSEDDTSK-FNKNLR--DRVPFAVVGSNTVVE 79 (257)
Q Consensus 10 IIPVIaKADtLT~~El~-------~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~-~~~~l~--~~~PFAVVgS~~~~~ 79 (257)
+.|.=+.+|.+|.-++. ..=+.|+..+.. |...=+|..-. .|.++.+ ....+. -.+||-+=....+-.
T Consensus 288 ~~~~~~~~~~i~I~qa~n~keEiEgvAr~Irq~i~e-g~rYkDiaIL~-gD~~aYe~~l~~If~~y~IP~fidk~~sM~~ 365 (1108)
T COG3857 288 IEIYAKDADHISIWQASNQKEEIEGVAREIRQKIRE-GYRYKDIAILL-GDPAAYELTLKEIFKLYEIPFFIDKKRSMAD 365 (1108)
T ss_pred chhhccCccceehHhhhchHHHHHHHHHHHHHHhhc-CCccceeeeee-CChHHHHHHHHHHHHHcCCCeeecccchhhh
Confidence 55666677777765444 444556666655 54433332111 1222222 233333 258998755543211
Q ss_pred -----eCCeeeecccCCceeeeecCCccCchHHHHHHH-HHhhHHHHHHhhhhhhHHHhHHHHhhcCCCCCCCCC-----
Q psy5592 80 -----IDGKKVRGRKYPWGIAEVENLEHCDFIALRNML-IRTNLQDLKDVTSNVHYENFRCRKLAGLGTDGKPRL----- 148 (257)
Q Consensus 80 -----~~g~~vrgR~YpWG~veVeN~~HcDF~~LR~~L-i~thl~dLkd~T~~~~YE~YRt~kL~~~~~~~~~~~----- 148 (257)
.=-..++.-+|.|+.-.| |..|+.-+ +..+..+.+| ..|||= ...|+.|....
T Consensus 366 HPli~fi~Sll~~~~~NW~~e~v-------l~llKt~~~f~~~~~~~iD-----~lEnYv----l~~GI~G~~kw~k~f~ 429 (1108)
T COG3857 366 HPLIEFIESLLDIKRYNWRYEPV-------LNLLKTDVLFDSNESEDID-----LLENYV----LAAGIKGKKKWTKLFT 429 (1108)
T ss_pred CcHHHHHHHHHHHHHhccchhHH-------HHHHHhcccccccchHHHH-----HHHHHH----HHhccccchhhhhHhh
Confidence 001245667899998776 33444442 4333332332 334442 12234333110
Q ss_pred ----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Q psy5592 149 ----LNKNPLAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEID--MKKSLEAQIKELEEKRRG 214 (257)
Q Consensus 149 ----~~~~p~~~~eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e--~~~~l~~q~~~leek~~~ 214 (257)
....++.+.-+-+......|...+. |.+ .+.|+++.++|..+-.+ .-.+++..+.++|+--++
T Consensus 430 ~~~~~~~~~~~~lne~r~~il~pL~~l~~-~sr--~kt~~~~~~al~~~Le~~~v~e~l~~~~~e~~~~g~~ 498 (1108)
T COG3857 430 YEHFRKIENLERLNETRLDILHPLETLLK-MSR--AKTVKELAQALYEFLEEGRVPEQLQTERQEAELNGRH 498 (1108)
T ss_pred HHHhhchhhHHHHHHHHHHHhhHHHHHHH-HHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhH
Confidence 1123455555556666667777776 555 46788888888777666 455555555555544333
No 87
>KOG0933|consensus
Probab=31.74 E-value=4.4e+02 Score=29.56 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=17.5
Q ss_pred CcCCCcceeeeeecC--CCCCHHHHHHHHH
Q psy5592 3 RLHDKVNIIPVIAKA--DTMTPEECALFKK 30 (257)
Q Consensus 3 ~L~~rVNIIPVIaKA--DtLT~~El~~fK~ 30 (257)
.|-.||-|||+= |. =.++|.-+...|.
T Consensus 567 ~l~rRvTiIPLn-KI~s~~~s~~v~~~ak~ 595 (1174)
T KOG0933|consen 567 NLRRRVTIIPLN-KIQSFVLSPNVLQAAKN 595 (1174)
T ss_pred cccceeEEEech-hhhhccCCHhHHHHHHH
Confidence 577899999973 33 3366666655543
No 88
>KOG1029|consensus
Probab=31.72 E-value=6.3e+02 Score=27.82 Aligned_cols=7 Identities=14% Similarity=0.097 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy5592 31 QILSEIA 37 (257)
Q Consensus 31 ~I~~~l~ 37 (257)
.|.--|+
T Consensus 77 Li~lkLq 83 (1118)
T KOG1029|consen 77 LIKLKLQ 83 (1118)
T ss_pred HHHHHhc
Confidence 3443343
No 89
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=31.59 E-value=68 Score=26.56 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhh--------hhhhcCCCeeEeecCeeeeeCCeeeecccCC
Q psy5592 22 PEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFN--------KNLRDRVPFAVVGSNTVVEIDGKKVRGRKYP 91 (257)
Q Consensus 22 ~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~--------~~l~~~~PFAVVgS~~~~~~~g~~vrgR~Yp 91 (257)
+.||..|-. +.+.|..+||.|..|.-. .+-.....| ..-.+.+|-.+| ||+.+..-.||
T Consensus 23 d~eL~~~a~-~~~~Lk~~gv~v~RyNL~--~~P~aF~~n~~V~~~L~~~G~e~LPitlV--------dGeiv~~G~YP 89 (123)
T PF06953_consen 23 DPELVRFAA-DLDWLKEQGVEVERYNLA--QNPQAFVENPEVNQLLQTEGAEALPITLV--------DGEIVKTGRYP 89 (123)
T ss_dssp -HHHHHHHH-HHHHHHHTT-EEEEEETT--T-TTHHHHSHHHHHHHHHH-GGG-SEEEE--------TTEEEEESS--
T ss_pred CHHHHHHHH-HHHHHHhCCceEEEEccc--cCHHHHHhCHHHHHHHHHcCcccCCEEEE--------CCEEEEecCCC
Confidence 467777764 455778899999776543 122222222 223457887665 78888888999
No 90
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=31.46 E-value=3.4e+02 Score=23.96 Aligned_cols=17 Identities=47% Similarity=0.466 Sum_probs=7.4
Q ss_pred HHHHHHHHhHHHHHHHH
Q psy5592 206 KELEEKRRGLELEISQW 222 (257)
Q Consensus 206 ~~leek~~~le~e~~~~ 222 (257)
.+++.+..+|+.++...
T Consensus 156 ~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 156 EELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 91
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=31.39 E-value=83 Score=31.41 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=25.6
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHHHh
Q psy5592 8 VNIIPVIAKADTMTPEECALFKKQILSEIAQ 38 (257)
Q Consensus 8 VNIIPVIaKADtLT~~El~~fK~~I~~~l~~ 38 (257)
-++|.||.|.|..+++++......|...+..
T Consensus 172 ~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~ 202 (460)
T PTZ00327 172 KHIIILQNKIDLVKEAQAQDQYEEIRNFVKG 202 (460)
T ss_pred CcEEEEEecccccCHHHHHHHHHHHHHHHHh
Confidence 3789999999999988887777778776654
No 92
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=31.18 E-value=2.6e+02 Score=21.94 Aligned_cols=18 Identities=50% Similarity=0.732 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhHHHH
Q psy5592 201 LEAQIKELEEKRRGLELE 218 (257)
Q Consensus 201 l~~q~~~leek~~~le~e 218 (257)
.+.+-++|||+++.|+..
T Consensus 67 qErDEkElEERrKALe~~ 84 (86)
T PF15437_consen 67 QERDEKELEERRKALEMN 84 (86)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 345667899999888753
No 93
>KOG0804|consensus
Probab=30.96 E-value=5.9e+02 Score=25.97 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy5592 156 QMEEEKREHEAKMKKMEV 173 (257)
Q Consensus 156 ~~eee~~~~~~kl~k~E~ 173 (257)
+++.++.-.+..+-+|+.
T Consensus 329 qleSqr~y~e~~~~e~~q 346 (493)
T KOG0804|consen 329 QLESQRKYYEQIMSEYEQ 346 (493)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 94
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=30.92 E-value=3.9e+02 Score=28.55 Aligned_cols=59 Identities=19% Similarity=0.343 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcchH
Q psy5592 173 VDMEQVFEMKVKEKKQKLKDSEID-------------MKKSLEAQIKELEEKRRGLELEISQWEQSNGVSMD 231 (257)
Q Consensus 173 ~em~~vF~~kv~eke~kl~~~e~e-------------~~~~l~~q~~~leek~~~le~e~~~~~~~~~~~~~ 231 (257)
+-.+..+..+|.+-+..|+++..+ +...+.+....||-+|++|.+|+..+-.+-...++
T Consensus 26 a~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~ 97 (717)
T PF09730_consen 26 ASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQ 97 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444455666666666665555 23334456667888888888888777655433333
No 95
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=30.86 E-value=69 Score=31.15 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=26.6
Q ss_pred ceeeeeecCCCCCHHHHHHHHH-HHHHHHHhCCC
Q psy5592 9 NIIPVIAKADTMTPEECALFKK-QILSEIAQHKI 41 (257)
Q Consensus 9 NIIPVIaKADtLT~~El~~fK~-~I~~~l~~~~I 41 (257)
-|||.++|+|..+++|+..+-. .|++-|..+|.
T Consensus 130 ~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 130 YIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred EEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 5799999999999888877655 67777777553
No 96
>COG1159 Era GTPase [General function prediction only]
Probab=30.10 E-value=98 Score=29.50 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=63.1
Q ss_pred CcceeeeeecCCCCCHHH-HHHHHHHHHHHHHhCCC------------------------ccccCCCCCCCChhhhH---
Q psy5592 7 KVNIIPVIAKADTMTPEE-CALFKKQILSEIAQHKI------------------------EIYQFPPGGSSEDDTSK--- 58 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~E-l~~fK~~I~~~l~~~~I------------------------~iy~fp~~~~dd~e~~~--- 58 (257)
.+++|-+|.|.|...++. +..+.......+....| ..+-||.+--.|..+..
T Consensus 114 ~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~a 193 (298)
T COG1159 114 KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAA 193 (298)
T ss_pred CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHH
Confidence 469999999999999998 55544443333222111 11223332111221111
Q ss_pred ------hhhhhhcCCCeeEeecCeeeeeC-CeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhh
Q psy5592 59 ------FNKNLRDRVPFAVVGSNTVVEID-GKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTS 125 (257)
Q Consensus 59 ------~~~~l~~~~PFAVVgS~~~~~~~-g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~ 125 (257)
....+++.+|++|---.+.++.+ +..+ +=-+++-||...| +.++|+.+=+-||..-.
T Consensus 194 EiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~----~I~a~I~Ver~sQ------K~IiIGk~G~~iK~IG~ 257 (298)
T COG1159 194 EIIREKLLLLLREELPHSVAVEIEEFEEREKGLL----KIHATIYVERESQ------KGIIIGKNGAMIKKIGT 257 (298)
T ss_pred HHHHHHHHHhcccccCceEEEEEEEEEecCCCeE----EEEEEEEEecCCc------cceEECCCcHHHHHHHH
Confidence 12345678999885433333332 2222 2347889999988 78889988888888764
No 97
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=29.49 E-value=1.3e+02 Score=26.14 Aligned_cols=58 Identities=31% Similarity=0.437 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcchHHHHhhhhh
Q psy5592 182 KVKEKKQKLKDSEID------MKKSLEAQIKELEEKRRGLELEISQWEQSNGVSMDELRRRSLE 239 (257)
Q Consensus 182 kv~eke~kl~~~e~e------~~~~l~~q~~~leek~~~le~e~~~~~~~~~~~~~~l~~~~l~ 239 (257)
+|.....+|...+.+ .-..|+.+...|+.+++.|+.++....+.....-+|+..-.++
T Consensus 96 ~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~ 159 (194)
T PF08614_consen 96 QLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQ 159 (194)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444 2233566666777777777777777776665555555544443
No 98
>KOG1144|consensus
Probab=29.35 E-value=2.8e+02 Score=30.35 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 165 EAKMKKMEVDMEQVFEMKVKEKKQKLKDSEID 196 (257)
Q Consensus 165 ~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e 196 (257)
...|++|=+..+..-+.+-++.+.+++..|.|
T Consensus 216 v~~~qe~La~~qe~eE~qkreeEE~~r~eeEE 247 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEERQKREEEERLRREEEE 247 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344333333333333334444444443333
No 99
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.70 E-value=1e+02 Score=32.03 Aligned_cols=65 Identities=26% Similarity=0.505 Sum_probs=41.5
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhh----cCCCeeEeecCeeeeeCC
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLR----DRVPFAVVGSNTVVEIDG 82 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~----~~~PFAVVgS~~~~~~~g 82 (257)
.|=||||= ++...+=..|.+.|..+||++= .|+.+...+.+|+ ..+||-||.+..+++.+.
T Consensus 489 Qv~VipV~--------~~~~~ya~~v~~~L~~~giRvd-------vD~~~e~l~kKIR~a~~~kipyiiVvG~kE~e~~~ 553 (589)
T COG0441 489 QVRVIPVA--------DEHLDYAKEVAEKLRKAGIRVD-------IDDRNEKLGKKIREAGTQKIPYVIVVGDKEVETGT 553 (589)
T ss_pred EEEEEEeC--------hHHHHHHHHHHHHHHHcCCeee-------ecccccchHHHHHHHHhcCCCEEEEEchhhhccCc
Confidence 36688885 3334777889999999998872 1221223333333 489999988887776544
Q ss_pred eeee
Q psy5592 83 KKVR 86 (257)
Q Consensus 83 ~~vr 86 (257)
-.+|
T Consensus 554 v~vR 557 (589)
T COG0441 554 VVVR 557 (589)
T ss_pred eEEE
Confidence 3443
No 100
>PHA00669 hypothetical protein
Probab=28.55 E-value=28 Score=28.64 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=11.7
Q ss_pred CeeeecccCCceeeeecCC
Q psy5592 82 GKKVRGRKYPWGIAEVENL 100 (257)
Q Consensus 82 g~~vrgR~YpWG~veVeN~ 100 (257)
|..--.=.||||.+--.|.
T Consensus 23 g~~et~~eYP~GL~I~Ldn 41 (114)
T PHA00669 23 GAPETTPEYPWGLCITLNN 41 (114)
T ss_pred CCcCcCCCCCceEEEEECh
Confidence 3333345799999665443
No 101
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.24 E-value=5.1e+02 Score=24.36 Aligned_cols=59 Identities=22% Similarity=0.462 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5592 155 AQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGL 215 (257)
Q Consensus 155 ~~~eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~l 215 (257)
.....+....+.++..+-..+..+. .++.+...+..++..+|++ |+.++..|++..+..
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~-~k~~~~~~~i~~~~~eik~-l~~eI~~~~~~I~~r 99 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQ-SKIDELQKEIDQSKAEIKK-LQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3444555555566666666655543 5677777777777777665 667777777665553
No 102
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=27.96 E-value=1.6e+02 Score=29.41 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=39.1
Q ss_pred Ccceeeee-ecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCeee
Q psy5592 7 KVNIIPVI-AKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTVV 78 (257)
Q Consensus 7 rVNIIPVI-aKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~~ 78 (257)
.|=||||+ .+.+ .+++...=..|...|..+||.+.- ... +..-.......-...+||.||-+...+
T Consensus 284 qV~Iipi~~~~~~---~~~~~~~A~~l~~~Lr~~girv~l-D~r--~~s~gkk~k~Ae~~GvP~~IiIG~~El 350 (472)
T TIGR00408 284 QVVIIPIIFKKKE---NEKVMEAAREVRSRLKKAGFRVHI-DDR--DNRPGRKFYQWEIKGIPLRIEVGPNDI 350 (472)
T ss_pred eEEEEEccCCCCC---CHHHHHHHHHHHHHHHHCCCEEEE-ECC--CCCHHHHHHHHHHCCCCEEEEECcchh
Confidence 46799985 3333 245666777899999999998852 110 111112223333457899887665544
No 103
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=27.79 E-value=80 Score=23.78 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=18.0
Q ss_pred CCcceeeeeecCCCCCHHHHHHHH
Q psy5592 6 DKVNIIPVIAKADTMTPEECALFK 29 (257)
Q Consensus 6 ~rVNIIPVIaKADtLT~~El~~fK 29 (257)
...++|.|+.|+|.+++.+.....
T Consensus 103 ~~~~~ivv~nK~D~~~~~~~~~~~ 126 (163)
T cd00880 103 RGKPVLLVLNKIDLLPEEEEEELL 126 (163)
T ss_pred cCCeEEEEEEccccCChhhHHHHH
Confidence 456788888898888877766543
No 104
>KOG4364|consensus
Probab=27.69 E-value=5.5e+02 Score=27.54 Aligned_cols=7 Identities=71% Similarity=0.790 Sum_probs=2.9
Q ss_pred HHHHHHh
Q psy5592 208 LEEKRRG 214 (257)
Q Consensus 208 leek~~~ 214 (257)
-|||++.
T Consensus 314 keEKrrK 320 (811)
T KOG4364|consen 314 KEEKRRK 320 (811)
T ss_pred HHHHhhh
Confidence 3344443
No 105
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=27.65 E-value=75 Score=22.22 Aligned_cols=16 Identities=50% Similarity=0.698 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhHH
Q psy5592 201 LEAQIKELEEKRRGLE 216 (257)
Q Consensus 201 l~~q~~~leek~~~le 216 (257)
+.+|+.+||+||..|-
T Consensus 24 id~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 24 IDEQIAELEAKRQRLV 39 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677777766663
No 106
>KOG1490|consensus
Probab=27.57 E-value=38 Score=34.86 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=34.9
Q ss_pred ceeeeeecCCCCCHHHHHHHHHHHHHHHHhCC-CccccCCC
Q psy5592 9 NIIPVIAKADTMTPEECALFKKQILSEIAQHK-IEIYQFPP 48 (257)
Q Consensus 9 NIIPVIaKADtLT~~El~~fK~~I~~~l~~~~-I~iy~fp~ 48 (257)
-+|-|++|.|.|.++.|..=++.++++|..-| ++|++-..
T Consensus 283 ~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 283 VTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred ceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence 47889999999999999999999999988877 88887543
No 107
>PF14992 TMCO5: TMCO5 family
Probab=27.44 E-value=2.6e+02 Score=26.52 Aligned_cols=66 Identities=29% Similarity=0.369 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhHHHHHHHHHhhhh---cchHHHHhhhhh
Q psy5592 174 DMEQVFEMKVKEKKQKLKDSEIDMKKS---------LEAQIKELEEKRRGLELEISQWEQSNG---VSMDELRRRSLE 239 (257)
Q Consensus 174 em~~vF~~kv~eke~kl~~~e~e~~~~---------l~~q~~~leek~~~le~e~~~~~~~~~---~~~~~l~~~~l~ 239 (257)
+--+.|-+|+.++|...+..+.|+-+. .+.=..+-|.-.+.||.+.+.++..+. .|+++||+..-+
T Consensus 18 E~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e 95 (280)
T PF14992_consen 18 EANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDE 95 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhcc
Confidence 446789999999999999989882111 111112233334556667777776652 347899888654
No 108
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=27.34 E-value=1.2e+02 Score=17.96 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q psy5592 200 SLEAQIKELEEK 211 (257)
Q Consensus 200 ~l~~q~~~leek 211 (257)
.|+.++.+|++.
T Consensus 5 ~lEa~~qkLe~e 16 (21)
T PF02370_consen 5 QLEADHQKLEAE 16 (21)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 109
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=26.24 E-value=5.8e+02 Score=27.09 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q psy5592 201 LEAQIKELEEKRRGLELEIS 220 (257)
Q Consensus 201 l~~q~~~leek~~~le~e~~ 220 (257)
|..+++..||..+.+|.+..
T Consensus 557 lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 557 LRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555553
No 110
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=25.95 E-value=7.4e+02 Score=25.51 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q psy5592 200 SLEAQIKELEEKRRGLELEISQWE 223 (257)
Q Consensus 200 ~l~~q~~~leek~~~le~e~~~~~ 223 (257)
.++.++..++.++.+.+..+..|-
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555566666666555555555554
No 111
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.91 E-value=5.1e+02 Score=23.60 Aligned_cols=92 Identities=18% Similarity=0.369 Sum_probs=52.0
Q ss_pred chHHHHHHHHHhhHHHHHHhhhhhhHHHhHHHHhhcCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 104 DFIALRNMLIRTNLQDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKNPLAQMEEEKREHEAKMKKMEVDMEQVFEMKV 183 (257)
Q Consensus 104 DF~~LR~~Li~thl~dLkd~T~~~~YE~YRt~kL~~~~~~~~~~~~~~~p~~~~eee~~~~~~kl~k~E~em~~vF~~kv 183 (257)
+|.++++-|+ .++..+.... .+-+.|+.+. ..+..|+..|++.|+.+.+....
T Consensus 12 ~lek~k~~i~-~e~~~~e~ee--~~L~e~~kE~------------------~~L~~Er~~h~eeLrqI~~DIn~------ 64 (230)
T PF10146_consen 12 ELEKLKNEIL-QEVESLENEE--KCLEEYRKEM------------------EELLQERMAHVEELRQINQDINT------ 64 (230)
T ss_pred HHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH------
Confidence 4556666654 3444544433 4566666552 34677888888888877765544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy5592 184 KEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWEQS 225 (257)
Q Consensus 184 ~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~~~~~~ 225 (257)
-+.-+++++.+..+ ....+..+.+....|..++.....+
T Consensus 65 --lE~iIkqa~~er~~-~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 65 --LENIIKQAESERNK-RQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred --HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666655433 3333344445555566665555444
No 112
>KOG0245|consensus
Probab=25.65 E-value=4.3e+02 Score=29.73 Aligned_cols=70 Identities=23% Similarity=0.346 Sum_probs=44.6
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q psy5592 150 NKNPLAQMEEEKREHEAKMKKMEVDMEQ------------VFEMKVKEKKQKLKDSEID---MKKSLEAQIKELEEKRRG 214 (257)
Q Consensus 150 ~~~p~~~~eee~~~~~~kl~k~E~em~~------------vF~~kv~eke~kl~~~e~e---~~~~l~~q~~~leek~~~ 214 (257)
+-+|-+.+--|+++...+|+.+-..-.. ++..-+-+-.++|++.|++ |++.-++.+++-|..|.+
T Consensus 355 NEdpnaKLIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e 434 (1221)
T KOG0245|consen 355 NEDPNAKLIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIRME 434 (1221)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777778888888888876543211 4455677777788887777 555555666666655554
Q ss_pred HHHHH
Q psy5592 215 LELEI 219 (257)
Q Consensus 215 le~e~ 219 (257)
=+.++
T Consensus 435 ~~~~L 439 (1221)
T KOG0245|consen 435 REALL 439 (1221)
T ss_pred HHHHH
Confidence 44443
No 113
>KOG3231|consensus
Probab=25.50 E-value=2.8e+02 Score=24.71 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5592 197 MKKSLEAQIKELEEKRRGLELEISQWE 223 (257)
Q Consensus 197 ~~~~l~~q~~~leek~~~le~e~~~~~ 223 (257)
.++.++..++.+|++-++||.|+...-
T Consensus 23 t~RdierdRr~me~~Ek~LElEIkk~A 49 (208)
T KOG3231|consen 23 TQRDIERDRRAMEKQEKQLELEIKKMA 49 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777766554
No 114
>KOG4661|consensus
Probab=25.40 E-value=5.4e+02 Score=27.31 Aligned_cols=30 Identities=33% Similarity=0.330 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5592 194 EIDMKKSLEAQIKELEEKRRGLELEISQWE 223 (257)
Q Consensus 194 e~e~~~~l~~q~~~leek~~~le~e~~~~~ 223 (257)
|.+-...|+.++-.||-+|..||.|+...+
T Consensus 644 ERee~eRl~~erlrle~qRQrLERErmErE 673 (940)
T KOG4661|consen 644 EREELERLKAERLRLERQRQRLERERMERE 673 (940)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666666666666665554
No 115
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=25.22 E-value=4.8e+02 Score=23.03 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5592 162 REHEAKMKKMEVDMEQ 177 (257)
Q Consensus 162 ~~~~~kl~k~E~em~~ 177 (257)
..+...++.+|.++..
T Consensus 106 ~~~~e~~k~le~~~~~ 121 (190)
T PF05266_consen 106 EKLLEERKKLEKKIEE 121 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555544444
No 116
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=25.16 E-value=5.4e+02 Score=23.67 Aligned_cols=76 Identities=20% Similarity=0.364 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhHHHHHHHHHhhhhcch
Q psy5592 159 EEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMK--------KSLEAQIKELEEKRRGLELEISQWEQSNGVSM 230 (257)
Q Consensus 159 ee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e~~--------~~l~~q~~~leek~~~le~e~~~~~~~~~~~~ 230 (257)
....+...++..+...|...+..++....++|......+. ..++.+...|+.-..+|...+...-......+
T Consensus 143 ~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L 222 (319)
T PF02601_consen 143 PDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRL 222 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666788888888888888899888888877776621 23555666666666666665555544444455
Q ss_pred HHHH
Q psy5592 231 DELR 234 (257)
Q Consensus 231 ~~l~ 234 (257)
+.++
T Consensus 223 ~~l~ 226 (319)
T PF02601_consen 223 QNLS 226 (319)
T ss_pred HHHH
Confidence 5544
No 117
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.06 E-value=75 Score=30.49 Aligned_cols=38 Identities=18% Similarity=0.400 Sum_probs=25.2
Q ss_pred CcCCCcceeeee----ecCCCCCHHHHHHHHHHHHHHHHhCCCccc
Q psy5592 3 RLHDKVNIIPVI----AKADTMTPEECALFKKQILSEIAQHKIEIY 44 (257)
Q Consensus 3 ~L~~rVNIIPVI----aKADtLT~~El~~fK~~I~~~l~~~~I~iy 44 (257)
.+..+|||||.- .|....+++++..|++. |..+||.+.
T Consensus 282 ~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~----L~~~Gi~vt 323 (345)
T PRK14457 282 GFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRV----LEQRGVAVS 323 (345)
T ss_pred cCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHH----HHHCCCeEE
Confidence 445578888873 35566777887776543 566787764
No 118
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=24.97 E-value=4.7e+02 Score=22.82 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=39.0
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCC-hhhhHhhhhhhcCCCeeEeecCeee
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSE-DDTSKFNKNLRDRVPFAVVGSNTVV 78 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd-~e~~~~~~~l~~~~PFAVVgS~~~~ 78 (257)
.|=||||..+.+ ..+.+...-..|...|..+||.+.--.. +. .-..+....-...+||.|+-+...+
T Consensus 12 qVvIipi~~~~~--~~~~~~~~a~~i~~~Lr~~Girv~~D~r---~~~s~g~K~~~ae~~GvP~~I~IG~~El 79 (202)
T cd00862 12 QVVIVPIGIKDE--KREEVLEAADELAERLKAAGIRVHVDDR---DNYTPGWKFNDWELKGVPLRIEIGPRDL 79 (202)
T ss_pred eEEEEEecCCcc--chHHHHHHHHHHHHHHHHCCCEEEEECC---CCCCHhHHHHHHHhCCCCEEEEECcchh
Confidence 456888864411 2345667788999999999998842110 11 1112233333456899886665544
No 119
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=24.65 E-value=2.8e+02 Score=22.27 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHH-------HHHHHhh
Q psy5592 180 EMKVKEKKQKLKDSEID--MKKSLEAQIKELEEKRRGLELE-------ISQWEQS 225 (257)
Q Consensus 180 ~~kv~eke~kl~~~e~e--~~~~l~~q~~~leek~~~le~e-------~~~~~~~ 225 (257)
+.|+.+|.++|....+= +-..|..|+..|.+|...+... +.+|...
T Consensus 3 ~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV 57 (103)
T PF08654_consen 3 QARIAEKKAELEALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNV 57 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHH
Confidence 46777888877554433 6667778888999998887665 5666644
No 120
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=24.56 E-value=9e+02 Score=27.12 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHh
Q psy5592 201 LEAQIKELEEKRRGLELEISQWEQ 224 (257)
Q Consensus 201 l~~q~~~leek~~~le~e~~~~~~ 224 (257)
++.++..++....++..++..|..
T Consensus 683 ~~~~l~~l~~~l~~~~~e~~~~~~ 706 (1201)
T PF12128_consen 683 IEEQLNELEEELKQLKQELEELLE 706 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 121
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=24.48 E-value=89 Score=26.00 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=26.3
Q ss_pred eeeeeecC-C--CCCHHHHHHHHHHHHHHHHhCCCccccCCCC
Q psy5592 10 IIPVIAKA-D--TMTPEECALFKKQILSEIAQHKIEIYQFPPG 49 (257)
Q Consensus 10 IIPVIaKA-D--tLT~~El~~fK~~I~~~l~~~~I~iy~fp~~ 49 (257)
++||=+|- | .|+.+.++.+=+.|...+..+|.++++|...
T Consensus 56 i~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s~~ 98 (130)
T PF04914_consen 56 IQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADFSDD 98 (130)
T ss_dssp E----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-TTG
T ss_pred ecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEecccC
Confidence 56776653 3 4789999999999999999999999999875
No 122
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=24.39 E-value=1.1e+02 Score=22.96 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=25.0
Q ss_pred CCCeeEeecCee---eeeCCeeeecccC------------CceeeeecCCccCch
Q psy5592 66 RVPFAVVGSNTV---VEIDGKKVRGRKY------------PWGIAEVENLEHCDF 105 (257)
Q Consensus 66 ~~PFAVVgS~~~---~~~~g~~vrgR~Y------------pWG~veVeN~~HcDF 105 (257)
++||.|.|+-.. .--||+.+....| -.|.+.+.++.+.|-
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~ 56 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNN 56 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccC
Confidence 579999987642 1236655543222 257788888887763
No 123
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=23.92 E-value=33 Score=27.75 Aligned_cols=11 Identities=36% Similarity=1.319 Sum_probs=9.7
Q ss_pred eeecccCCcee
Q psy5592 84 KVRGRKYPWGI 94 (257)
Q Consensus 84 ~vrgR~YpWG~ 94 (257)
.||...||||-
T Consensus 80 rIRtK~FPWG~ 90 (102)
T PLN02595 80 HIRNKEFPWGP 90 (102)
T ss_pred eeecCCCCCCC
Confidence 58999999995
No 124
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.65 E-value=4.5e+02 Score=22.20 Aligned_cols=36 Identities=17% Similarity=0.420 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 160 EKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEID 196 (257)
Q Consensus 160 e~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e 196 (257)
+..+....+...+.++.+ ++.++.+....+...+..
T Consensus 82 e~~~~~~~l~~l~~el~~-l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQ-LQERIQELESELEKLKED 117 (191)
T ss_pred hHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 444445555555555554 445555555555444333
No 125
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.49 E-value=4.4e+02 Score=28.20 Aligned_cols=12 Identities=42% Similarity=0.672 Sum_probs=7.2
Q ss_pred HHHHhhHHHHHH
Q psy5592 111 MLIRTNLQDLKD 122 (257)
Q Consensus 111 ~Li~thl~dLkd 122 (257)
+++.||..+|+.
T Consensus 438 viitTH~~eL~~ 449 (771)
T TIGR01069 438 VLITTHYKELKA 449 (771)
T ss_pred EEEECChHHHHH
Confidence 355667766654
No 126
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=22.85 E-value=3.6e+02 Score=22.39 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhc
Q psy5592 195 IDMKKSLEAQIKELEEKRRGLELEISQWEQSNGV 228 (257)
Q Consensus 195 ~e~~~~l~~q~~~leek~~~le~e~~~~~~~~~~ 228 (257)
++++..++.++..|+.++..|+..+..|-..+..
T Consensus 31 ~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~ 64 (149)
T PF07352_consen 31 ARIKEWYEAEIAPLQNRIEYLEGLLQAYAEANRD 64 (149)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence 3466677888888999999999999999887633
No 127
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=22.57 E-value=37 Score=26.60 Aligned_cols=11 Identities=36% Similarity=1.189 Sum_probs=9.6
Q ss_pred eeecccCCcee
Q psy5592 84 KVRGRKYPWGI 94 (257)
Q Consensus 84 ~vrgR~YpWG~ 94 (257)
.+|...||||-
T Consensus 57 ~IR~K~FpWGD 67 (86)
T cd00925 57 NIRTKPFPWGD 67 (86)
T ss_pred eeecCCCCCCC
Confidence 58999999984
No 128
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=22.42 E-value=2e+02 Score=25.86 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=25.0
Q ss_pred CCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccC
Q psy5592 6 DKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQF 46 (257)
Q Consensus 6 ~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~f 46 (257)
..+.+|-|+.|+|.....+... .....+..+|+++|..
T Consensus 66 ~~i~~vIV~NK~DL~~~~~~~~---~~~~~~~~~g~~v~~~ 103 (245)
T TIGR00157 66 QNIEPIIVLNKIDLLDDEDMEK---EQLDIYRNIGYQVLMT 103 (245)
T ss_pred CCCCEEEEEECcccCCCHHHHH---HHHHHHHHCCCeEEEE
Confidence 4577899999999876554332 3334556678777643
No 129
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=22.19 E-value=6.2e+02 Score=23.31 Aligned_cols=20 Identities=15% Similarity=-0.066 Sum_probs=12.7
Q ss_pred CccCchHHHHHHHHHhhHHH
Q psy5592 100 LEHCDFIALRNMLIRTNLQD 119 (257)
Q Consensus 100 ~~HcDF~~LR~~Li~thl~d 119 (257)
..|.+|....+-+...+-..
T Consensus 148 gg~~~~~~~~~~~~~~Y~~~ 167 (297)
T PF02841_consen 148 GGYQLFLKELDELEKEYEQE 167 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHhhc
Confidence 34667777777776665444
No 130
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.13 E-value=6.3e+02 Score=23.31 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q psy5592 200 SLEAQIKELEEKRRGLELEISQWE 223 (257)
Q Consensus 200 ~l~~q~~~leek~~~le~e~~~~~ 223 (257)
+|+.++..+.++...|+.++....
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~ 116 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELM 116 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 131
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=21.92 E-value=1.1e+02 Score=24.72 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=16.4
Q ss_pred CcceeeeeecCCCCCHHHHHH
Q psy5592 7 KVNIIPVIAKADTMTPEECAL 27 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~ 27 (257)
..++|-|+.|+|.++.++...
T Consensus 41 ~~p~iiv~NK~Dl~~~~~~~~ 61 (156)
T cd01859 41 GKKLLIVLNKADLVPKEVLEK 61 (156)
T ss_pred CCcEEEEEEhHHhCCHHHHHH
Confidence 468999999999987665543
No 132
>KOG1144|consensus
Probab=21.81 E-value=9e+02 Score=26.68 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy5592 162 REHEAKMKKMEVDME 176 (257)
Q Consensus 162 ~~~~~kl~k~E~em~ 176 (257)
++.++++++.|++-+
T Consensus 235 reeEE~~r~eeEEer 249 (1064)
T KOG1144|consen 235 REEEERLRREEEEER 249 (1064)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 133
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.76 E-value=8.2e+02 Score=24.53 Aligned_cols=6 Identities=17% Similarity=0.379 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy5592 215 LELEIS 220 (257)
Q Consensus 215 le~e~~ 220 (257)
|.+-++
T Consensus 117 La~~L~ 122 (420)
T COG4942 117 LAEQLA 122 (420)
T ss_pred HHHHHH
Confidence 333333
No 134
>COG3365 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.72 E-value=76 Score=26.16 Aligned_cols=31 Identities=45% Similarity=0.703 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHHHHh---CCCccccCCCC
Q psy5592 19 TMTPEECALFKKQILSEIAQ---HKIEIYQFPPG 49 (257)
Q Consensus 19 tLT~~El~~fK~~I~~~l~~---~~I~iy~fp~~ 49 (257)
.|||+|...+=..-|.+|.- -||.||.||..
T Consensus 41 gL~P~eeaklIe~TM~eId~e~F~GIei~s~p~~ 74 (118)
T COG3365 41 GLTPEEEAKLIEMTMSEIDPENFSGIEIYSYPPK 74 (118)
T ss_pred CCChHHHHHHHHHHHHhcCcccccceEEEEeCCc
Confidence 69999999888888887765 68999999975
No 135
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=21.70 E-value=1.7e+02 Score=24.43 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=22.7
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHH
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEI 36 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l 36 (257)
.+++|-||.|.|.+ ..++....+.+...+
T Consensus 122 ~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l 150 (188)
T PF00009_consen 122 GIPIIVVLNKMDLI-EKELEEIIEEIKEKL 150 (188)
T ss_dssp T-SEEEEEETCTSS-HHHHHHHHHHHHHHH
T ss_pred ccceEEeeeeccch-hhhHHHHHHHHHHHh
Confidence 46699999999999 777777777777555
No 136
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=21.51 E-value=7.2e+02 Score=23.80 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=15.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHH
Q psy5592 152 NPLAQMEEEKREHEAKMKKMEVDM 175 (257)
Q Consensus 152 ~p~~~~eee~~~~~~kl~k~E~em 175 (257)
.|+.|.|--+|-..++|+..+..+
T Consensus 61 TPLQQKEV~iRHLkakLkes~~~l 84 (305)
T PF15290_consen 61 TPLQQKEVCIRHLKAKLKESENRL 84 (305)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777667776665443
No 137
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=21.20 E-value=3.9e+02 Score=25.93 Aligned_cols=55 Identities=29% Similarity=0.469 Sum_probs=37.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5592 152 NPLAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGL 215 (257)
Q Consensus 152 ~p~~~~eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~l 215 (257)
-|+-+.-||+|....+|+++-..+ -|.|+-++ +|+.|+++|+-.++-|||-.+..
T Consensus 108 MPVKqWLEERR~lQgEmQ~LrDKL------AiaERtAk---aEaQLkeK~klRLK~LEe~Lk~~ 162 (351)
T PF07058_consen 108 MPVKQWLEERRFLQGEMQQLRDKL------AIAERTAK---AEAQLKEKLKLRLKVLEEGLKGS 162 (351)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH---HHHHHHHHHHHHHHHHHhhccCC
Confidence 588898888988766666555443 23444443 57778888888888887765543
No 138
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=20.99 E-value=1.6e+02 Score=26.57 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhh-cCCCeeEeecCe
Q psy5592 21 TPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLR-DRVPFAVVGSNT 76 (257)
Q Consensus 21 T~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~-~~~PFAVVgS~~ 76 (257)
+|+++...-..+++.|...||+++..|..+- ||--........ ...+..||+++.
T Consensus 79 ~p~~l~~q~~~~~~~l~~~gi~~i~~~~~EA-DD~ia~la~~~~~~g~~~~I~S~Dk 134 (240)
T cd00008 79 MPEELREQIPLIKELLEALGIPVLEIEGYEA-DDVIGTLAKKAEAEGYKVVIVSGDK 134 (240)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEecCCcCH-HHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 6889999999999999999999998886531 222122222222 224566776664
No 139
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=20.92 E-value=8.1e+02 Score=24.11 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 160 EKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEID 196 (257)
Q Consensus 160 e~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e 196 (257)
.+.+...+|..++..|.+.+..++..++++|......
T Consensus 256 ~~~el~qrLd~l~~RL~~am~~~L~~~r~rL~~L~~R 292 (432)
T TIGR00237 256 NQDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVAS 292 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888889999999999999999888776655
No 140
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=20.75 E-value=1.2e+02 Score=23.40 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=10.0
Q ss_pred cceeeeeecCCCCCHHH
Q psy5592 8 VNIIPVIAKADTMTPEE 24 (257)
Q Consensus 8 VNIIPVIaKADtLT~~E 24 (257)
+++|.|+.|+|.....+
T Consensus 106 ~piiiv~nK~D~~~~~~ 122 (157)
T cd01894 106 KPVILVVNKVDNIKEED 122 (157)
T ss_pred CCEEEEEECcccCChHH
Confidence 55666666666655443
No 141
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=20.69 E-value=6.2e+02 Score=22.67 Aligned_cols=10 Identities=10% Similarity=0.411 Sum_probs=3.6
Q ss_pred HHHHHHHHHh
Q psy5592 205 IKELEEKRRG 214 (257)
Q Consensus 205 ~~~leek~~~ 214 (257)
+..|.+++..
T Consensus 94 l~~L~~ri~~ 103 (247)
T PF06705_consen 94 LDSLNDRIEA 103 (247)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 142
>PRK00098 GTPase RsgA; Reviewed
Probab=20.44 E-value=1.6e+02 Score=27.19 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccC
Q psy5592 6 DKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQF 46 (257)
Q Consensus 6 ~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~f 46 (257)
..+++|-|+.|+|.....+. . ......+...|++++..
T Consensus 110 ~~ip~iIVlNK~DL~~~~~~--~-~~~~~~~~~~g~~v~~v 147 (298)
T PRK00098 110 NGIKPIIVLNKIDLLDDLEE--A-RELLALYRAIGYDVLEL 147 (298)
T ss_pred CCCCEEEEEEhHHcCCCHHH--H-HHHHHHHHHCCCeEEEE
Confidence 35789999999998633221 1 12334455667776643
No 143
>KOG4715|consensus
Probab=20.27 E-value=8.2e+02 Score=23.96 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 166 AKMKKMEVDMEQVFEMKVKEKKQKLKDSEID 196 (257)
Q Consensus 166 ~kl~k~E~em~~vF~~kv~eke~kl~~~e~e 196 (257)
..-+|+|+|+.++ +.+..+|.+++.+|-..
T Consensus 235 ~HQ~KLEaEL~q~-Ee~hq~kKrk~~estds 264 (410)
T KOG4715|consen 235 VHQRKLEAELLQI-EERHQEKKRKFLESTDS 264 (410)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhccHH
Confidence 3445667776543 34666777777666544
No 144
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=20.07 E-value=8.1e+02 Score=23.78 Aligned_cols=36 Identities=11% Similarity=0.335 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 161 KREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEID 196 (257)
Q Consensus 161 ~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e 196 (257)
+.+...++..++..|.+.+..++..++++|......
T Consensus 262 ~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~r 297 (438)
T PRK00286 262 RAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARR 297 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667888888899999889999888888765555
No 145
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=20.01 E-value=5.2e+02 Score=21.55 Aligned_cols=61 Identities=13% Similarity=0.242 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHhhhhcchHHH
Q psy5592 173 VDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQI----KELEEKRRGLELEISQWEQSNGVSMDEL 233 (257)
Q Consensus 173 ~em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~----~~leek~~~le~e~~~~~~~~~~~~~~l 233 (257)
+++.+-|...+..-+.+|.+.+-+.++.+.+.. ..+..=+.+++.+++.+..........|
T Consensus 19 ~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql 83 (131)
T PF11068_consen 19 EELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQL 83 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777888888888888888777666544 4555556667777777776655444333
Done!