Query psy5592
Match_columns 257
No_of_seqs 251 out of 682
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 21:29:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qag_B Septin-6, protein NEDD5 100.0 1.3E-63 4.4E-68 479.0 5.5 235 1-239 170-412 (427)
2 2qag_C Septin-7; cell cycle, c 100.0 1E-58 3.6E-63 443.0 8.2 231 1-234 161-404 (418)
3 3sop_A Neuronal-specific septi 100.0 1.3E-48 4.6E-53 352.0 11.4 136 1-137 134-270 (270)
4 2qnr_A Septin-2, protein NEDD5 100.0 2.6E-41 8.7E-46 307.8 10.6 141 2-143 150-291 (301)
5 2qag_A Septin-2, protein NEDD5 100.0 3.2E-41 1.1E-45 314.4 6.7 140 2-142 169-309 (361)
6 3t5d_A Septin-7; GTP-binding p 100.0 1.8E-39 6.1E-44 289.0 8.5 136 2-139 139-274 (274)
7 1h65_A Chloroplast outer envel 98.0 1.9E-06 6.5E-11 75.7 3.0 72 8-94 155-233 (270)
8 1wf3_A GTP-binding protein; GT 96.7 0.00087 3E-08 60.4 3.6 55 61-124 203-257 (301)
9 1nrj_B SR-beta, signal recogni 89.0 0.067 2.3E-06 43.8 -0.3 82 5-86 118-204 (218)
10 3s9g_A Protein hexim1; cyclin 83.9 8.3 0.00028 30.0 9.0 15 127-141 17-31 (104)
11 3pqc_A Probable GTP-binding pr 70.9 3.6 0.00012 32.1 3.7 41 7-47 133-174 (195)
12 4dhe_A Probable GTP-binding pr 70.5 4.4 0.00015 32.7 4.3 33 6-38 143-175 (223)
13 3mq9_A Bone marrow stromal ant 67.0 76 0.0026 29.2 12.5 52 174-225 397-458 (471)
14 3oja_B Anopheles plasmodium-re 65.9 58 0.002 30.8 11.7 16 156-171 467-482 (597)
15 2i1j_A Moesin; FERM, coiled-co 65.1 16 0.00056 35.8 7.8 8 88-95 238-245 (575)
16 1ik9_A DNA repair protein XRCC 64.5 39 0.0013 29.1 9.2 52 157-212 158-209 (213)
17 1svi_A GTP-binding protein YSX 62.6 5.9 0.0002 31.1 3.5 42 6-47 133-175 (195)
18 1f5n_A Interferon-induced guan 60.4 35 0.0012 33.6 9.2 17 31-47 221-239 (592)
19 3oja_B Anopheles plasmodium-re 58.5 1.1E+02 0.0039 28.7 12.2 9 104-112 397-405 (597)
20 2i1j_A Moesin; FERM, coiled-co 55.0 12 0.00042 36.6 4.9 19 159-177 335-353 (575)
21 2qag_B Septin-6, protein NEDD5 50.6 3.3 0.00011 39.4 0.0 18 208-225 375-392 (427)
22 2efr_A General control protein 50.5 1E+02 0.0036 25.3 12.3 35 177-211 73-113 (155)
23 1f5n_A Interferon-induced guan 49.8 99 0.0034 30.4 10.4 21 19-39 287-307 (592)
24 3bas_A Myosin heavy chain, str 49.1 77 0.0026 23.4 12.0 69 155-225 10-78 (89)
25 2v71_A Nuclear distribution pr 46.7 1.4E+02 0.0046 25.5 12.2 39 157-196 47-85 (189)
26 3plt_A Sphingolipid long chain 46.0 86 0.0029 27.6 8.4 43 89-135 53-95 (234)
27 2q2f_A Selenoprotein S; anti-p 44.5 79 0.0027 23.9 6.7 24 195-218 54-77 (89)
28 4egx_A Kinesin-like protein KI 43.7 80 0.0027 26.3 7.6 25 166-194 12-36 (184)
29 2dfs_A Myosin-5A; myosin-V, in 42.7 1.7E+02 0.0059 30.8 11.5 18 207-224 1020-1037(1080)
30 3onj_A T-snare VTI1; helix, HA 41.7 1E+02 0.0036 22.9 7.3 59 112-178 2-60 (97)
31 1pui_A ENGB, probable GTP-bind 41.6 23 0.00079 28.1 3.8 43 8-50 138-180 (210)
32 3bas_A Myosin heavy chain, str 40.9 1.1E+02 0.0036 22.6 9.3 21 197-217 64-84 (89)
33 3u1c_A Tropomyosin alpha-1 cha 39.8 1.2E+02 0.004 22.8 7.9 38 182-220 24-61 (101)
34 2yv5_A YJEQ protein; hydrolase 39.2 67 0.0023 28.1 6.8 41 6-47 109-149 (302)
35 1v95_A Nuclear receptor coacti 39.1 15 0.00051 29.6 2.2 68 6-87 9-81 (130)
36 4b4t_J 26S protease regulatory 38.8 41 0.0014 31.7 5.6 53 169-222 13-65 (405)
37 2xv5_A Lamin-A/C; structural p 36.0 1.2E+02 0.0041 21.8 8.6 47 177-224 8-54 (74)
38 3ghg_A Fibrinogen alpha chain; 36.0 1.2E+02 0.0041 29.9 8.3 11 106-116 49-59 (562)
39 3o0z_A RHO-associated protein 35.9 1.9E+02 0.0066 24.1 11.1 28 165-192 29-59 (168)
40 2v66_B Nuclear distribution pr 34.5 1.6E+02 0.0056 22.9 10.6 56 181-236 17-85 (111)
41 3sjy_A Translation initiation 32.7 35 0.0012 31.1 3.9 33 8-40 130-162 (403)
42 1wb1_A Translation elongation 31.4 43 0.0015 31.6 4.4 33 7-39 125-157 (482)
43 3nmd_A CGMP dependent protein 31.1 1.5E+02 0.0052 21.5 6.5 22 201-222 45-66 (72)
44 2rcn_A Probable GTPase ENGC; Y 30.9 88 0.003 28.7 6.3 40 7-47 160-199 (358)
45 3r07_C Putative lipoate-protei 30.8 17 0.00057 27.1 1.1 38 85-122 9-64 (91)
46 2qag_C Septin-7; cell cycle, c 30.6 11 0.00036 35.6 0.0 49 177-225 325-388 (418)
47 3ial_A Prolyl-tRNA synthetase; 29.6 87 0.003 30.4 6.3 65 7-76 301-371 (518)
48 3u59_A Tropomyosin beta chain; 29.4 1.8E+02 0.006 21.7 7.9 14 182-195 24-37 (101)
49 2xnx_M M protein, M1-BC1; cell 28.6 2.4E+02 0.0083 23.1 9.6 43 197-241 81-123 (146)
50 2v71_A Nuclear distribution pr 28.4 2.7E+02 0.0093 23.6 11.6 22 156-177 28-49 (189)
51 4etp_A Kinesin-like protein KA 28.3 2E+02 0.0069 26.7 8.4 40 183-223 19-58 (403)
52 3bma_A D-alanyl-lipoteichoic a 27.8 38 0.0013 32.0 3.3 41 10-50 296-340 (407)
53 1kk1_A EIF2gamma; initiation o 27.7 65 0.0022 29.2 4.8 38 8-45 138-178 (410)
54 1qf6_A THRRS, threonyl-tRNA sy 27.2 51 0.0017 32.5 4.2 68 7-89 541-612 (642)
55 1i84_S Smooth muscle myosin he 25.9 3.3E+02 0.011 28.7 10.3 8 26-33 660-667 (1184)
56 2qpt_A EH domain-containing pr 25.7 44 0.0015 32.3 3.4 27 7-33 218-244 (550)
57 3na7_A HP0958; flagellar bioge 25.5 3.2E+02 0.011 23.4 10.8 41 154-195 92-132 (256)
58 2oqq_A Transcription factor HY 25.4 1.3E+02 0.0046 19.6 4.6 26 201-226 8-33 (42)
59 1dip_A Delta-sleep-inducing pe 24.0 1E+02 0.0035 22.7 4.3 26 199-224 18-43 (78)
60 1lq7_A Alpha3W; three helix bu 23.9 1.5E+02 0.0052 20.6 4.9 25 196-220 36-65 (67)
61 1use_A VAsp, vasodilator-stimu 22.9 83 0.0028 21.0 3.3 20 19-38 3-22 (45)
62 1t9h_A YLOQ, probable GTPase E 22.7 55 0.0019 29.3 3.2 41 6-46 116-156 (307)
63 3hnw_A Uncharacterized protein 22.2 3E+02 0.01 21.9 11.0 10 112-121 36-45 (138)
64 3llu_A RAS-related GTP-binding 21.9 97 0.0033 24.2 4.3 28 5-32 127-154 (196)
65 3r7w_A Gtpase1, GTP-binding pr 21.8 1.9E+02 0.0064 25.0 6.5 42 5-46 113-161 (307)
66 1lwu_C Fibrinogen gamma chain; 21.7 3.3E+02 0.011 24.8 8.3 9 227-235 73-81 (323)
67 3lxx_A GTPase IMAP family memb 21.6 47 0.0016 27.3 2.4 41 8-48 146-190 (239)
68 1gk6_A Vimentin; intermediate 21.0 2E+02 0.0069 19.5 7.5 44 180-224 6-49 (59)
69 3ktb_A Arsenical resistance op 21.0 1.3E+02 0.0043 23.3 4.5 59 22-91 26-92 (106)
70 2k48_A Nucleoprotein; viral pr 20.0 3.1E+02 0.011 21.3 9.8 42 183-224 51-103 (107)
No 1
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-63 Score=478.99 Aligned_cols=235 Identities=37% Similarity=0.652 Sum_probs=109.2
Q ss_pred CCCcCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCeeeee
Q psy5592 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTVVEI 80 (257)
Q Consensus 1 MK~L~~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~~~~ 80 (257)
|+.|+..+||||||+|+|+||++|+..|+..|+++|..+||.||.||.+ |++....+..+++.+|||||||++++++
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~---d~~~~~~~~~~~~~~PFavvgs~~~~~~ 246 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD---DESVAEINGTMNAHLPFAVIGSTEELKI 246 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--------CCSHHHHHTTC-CCBCCC-------
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC---chhHHHHHhhhcCCCCeEEECCCCeeee
Confidence 4678899999999999999999999999999999999999999999863 4445567888999999999999999999
Q ss_pred CCeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhhhhHHHhHHHHhhcCCCCCCC-CCCCCCchhhHHH
Q psy5592 81 DGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSNVHYENFRCRKLAGLGTDGKP-RLLNKNPLAQMEE 159 (257)
Q Consensus 81 ~g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~~~YE~YRt~kL~~~~~~~~~-~~~~~~p~~~~ee 159 (257)
+|+.||||+||||+|+|+||+||||++||++||+|||+||+++|+++|||+||+++|+.++..+.. ...+.+|...+++
T Consensus 247 ~g~~vrgR~ypWG~~even~~h~DF~~Lr~~l~~t~~~dL~~~T~~~~YE~yR~~~L~~~~~~~~~~~~~~~~~~~~~~~ 326 (427)
T 2qag_B 247 GNKMMRARQYPWGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEA 326 (427)
T ss_dssp -CCCC-----CCCCCC-----CCSSHHHHHHHHHTSTTHHHHHHHHHTTHHHHHHHHHHHC-------------------
T ss_pred CCcEEEEecCCCceEEeCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998765432 1222355677889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcchHH
Q psy5592 160 EKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEID-------MKKSLEAQIKELEEKRRGLELEISQWEQSNGVSMDE 232 (257)
Q Consensus 160 e~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e-------~~~~l~~q~~~leek~~~le~e~~~~~~~~~~~~~~ 232 (257)
++++|+.+|++||++|+++|+++|++++++|+++|++ |++.+++|+++||+++++||+|+++|++.++.. +.
T Consensus 327 ~~~~~~~~~~~~e~~~~~~f~~~v~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~-~~ 405 (427)
T 2qag_B 327 KRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAA-EL 405 (427)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 9999999999999999999999999999999999997 888899999999999999999999999997655 33
Q ss_pred HHhhhhh
Q psy5592 233 LRRRSLE 239 (257)
Q Consensus 233 l~~~~l~ 239 (257)
++.++..
T Consensus 406 ~~~~~~~ 412 (427)
T 2qag_B 406 LQSQGSQ 412 (427)
T ss_dssp -------
T ss_pred Hhhhhhh
Confidence 5555433
No 2
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=100.00 E-value=1e-58 Score=443.00 Aligned_cols=231 Identities=66% Similarity=1.043 Sum_probs=100.9
Q ss_pred CCCcCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCeeeee
Q psy5592 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTVVEI 80 (257)
Q Consensus 1 MK~L~~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~~~~ 80 (257)
|+.|+..+||||||+|+|++|+.++..||..|++.+..+||++|.||..+ +++.......+...+|||||||++.+++
T Consensus 161 lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~--~~~v~~~~~~l~~~iPfavv~s~~~~~~ 238 (418)
T 2qag_C 161 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETD--DEEENKLVKKIKDRLPLAVVGSNTIIEV 238 (418)
T ss_dssp HHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-------------------CCEEECC-------
T ss_pred HHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCC--CcCHHHHHHHHHhhCCcceeecceeEec
Confidence 34567789999999999999999999999999999999999999999653 2223346778889999999999999999
Q ss_pred CCeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhhhhHHHhHHHHhhcC---CCCCCC---CCCCCCch
Q psy5592 81 DGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSNVHYENFRCRKLAGL---GTDGKP---RLLNKNPL 154 (257)
Q Consensus 81 ~g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~~~YE~YRt~kL~~~---~~~~~~---~~~~~~p~ 154 (257)
+|+.|+||+||||+|+|+|+.||||+.||++||+|||+||+++|+++|||+||+++|.++ +..+.. +..+ +|.
T Consensus 239 ~g~~vr~R~y~wg~i~Ven~~h~df~~Lr~~Li~~~~~dl~~~T~~~~Ye~yR~~~l~~~~~~~~~~~~~~~~~~~-~~~ 317 (418)
T 2qag_C 239 NGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTK-SPL 317 (418)
T ss_dssp ------CEECSSCEECC--CCSSTTTHHHHHHHTTSHHHHHHHHHHHTHHHHHHHHCC----------------------
T ss_pred CCceeecccccceEEEecchhhCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCccccccccccCC-ChH
Confidence 999999999999999999999999999999999999999999999999999999999987 443221 1112 688
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q psy5592 155 AQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEID-------MKKSLEAQIKELEEKRRGLELEISQWEQSNG 227 (257)
Q Consensus 155 ~~~eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e-------~~~~l~~q~~~leek~~~le~e~~~~~~~~~ 227 (257)
+++++++++|+.+|++||++|+++|+++|++++++|+++|++ |++.|++++++||+++++|+.++++|+++++
T Consensus 318 ~~~~~~~~~~~~~~~~~e~~~~~~f~~~v~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 397 (418)
T 2qag_C 318 AQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQR 397 (418)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998 7888999999999999999999999999987
Q ss_pred cchHHHH
Q psy5592 228 VSMDELR 234 (257)
Q Consensus 228 ~~~~~l~ 234 (257)
...+..+
T Consensus 398 ~~~~~~~ 404 (418)
T 2qag_C 398 ILEQQNS 404 (418)
T ss_dssp -------
T ss_pred hhhcccc
Confidence 6655433
No 3
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=100.00 E-value=1.3e-48 Score=352.05 Aligned_cols=136 Identities=50% Similarity=0.831 Sum_probs=121.4
Q ss_pred CCCcCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhh-hcCCCeeEeecCeeee
Q psy5592 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNL-RDRVPFAVVGSNTVVE 79 (257)
Q Consensus 1 MK~L~~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l-~~~~PFAVVgS~~~~~ 79 (257)
|+.|+..+||||||+|||+||++|+..||..|++.|..+||++|+||..++ |+++...+..+ ++.+|||||||+.+++
T Consensus 134 l~~L~~~~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~pfavv~s~~~~~ 212 (270)
T 3sop_A 134 MKHLSKVVNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYPQKEFDE-DLEDKTENDKIRQESMPFAVVGSDKEYQ 212 (270)
T ss_dssp HHHHHTTSEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTCCCSSCSCC----CHHHHHHHHHHHTTCSEECCCCCCEEE
T ss_pred HHHHHhcCcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCccccCCCCCCc-chHHHHHHHHHHhcCCCeEEEecceEEE
Confidence 456777799999999999999999999999999999999999999987643 33444444444 5899999999999999
Q ss_pred eCCeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhhhhHHHhHHHHh
Q psy5592 80 IDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSNVHYENFRCRKL 137 (257)
Q Consensus 80 ~~g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~~~YE~YRt~kL 137 (257)
++|+.|+||+||||+|+|||++||||++||+|||+|||+|||++|+++|||+||+++|
T Consensus 213 ~~g~~~~~r~y~wg~~~v~n~~h~df~~lr~~l~~~~~~~l~~~t~~~~ye~~r~~~l 270 (270)
T 3sop_A 213 VNGKRVLGRKTPWGIIEVENLNHCEFALLRDFVIRTHLQDLKEVTHNIHYETYRAKRL 270 (270)
T ss_dssp ETTEEEEEECCCC-CEESSCTTTCSHHHHHHHHHTTTHHHHHHHHHHTHHHHHHHHHC
T ss_pred eCCcEEEEeecCceEEEeCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999987
No 4
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=100.00 E-value=2.6e-41 Score=307.81 Aligned_cols=141 Identities=54% Similarity=0.912 Sum_probs=117.0
Q ss_pred CCcCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChh-hhHhhhhhhcCCCeeEeecCeeeee
Q psy5592 2 QRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDD-TSKFNKNLRDRVPFAVVGSNTVVEI 80 (257)
Q Consensus 2 K~L~~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e-~~~~~~~l~~~~PFAVVgS~~~~~~ 80 (257)
++++..+|+|||++|+|++|+.|+..++..|++.+..+||++|.++....+.++ -...+..+...+|||||||+..+++
T Consensus 150 ~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~~v~e~f~~l~~~i~~~~p~avigs~~~~~~ 229 (301)
T 2qnr_A 150 KAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEA 229 (301)
T ss_dssp HHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC---------CHHHHHHHHTTCSEECCCCCCBCC-
T ss_pred HHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccccccHHHHHHHHHhhcCCCceEECCCceEec
Confidence 456778999999999999999999999999999999999999999854322222 2345677888999999999999999
Q ss_pred CCeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhhhhHHHhHHHHhhcCCCC
Q psy5592 81 DGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSNVHYENFRCRKLAGLGTD 143 (257)
Q Consensus 81 ~g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~~~YE~YRt~kL~~~~~~ 143 (257)
+|+.+|||+||||+|+|+||+||||++||++|| |||+||++.|+++|||+||+++|.+++..
T Consensus 230 ~g~~~~~r~y~wg~~~v~n~~h~df~~lr~~l~-~~~~~l~~~t~~~~ye~~r~~~l~~~~~~ 291 (301)
T 2qnr_A 230 KGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGRK 291 (301)
T ss_dssp ----CBEEEETTEEEETTCTTTCSHHHHHHHHH-HTHHHHHHHHHHTHHHHHHHHHHHC----
T ss_pred CCcEEeeEcCCCceEeeCCCccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999 99999999999999999999999988754
No 5
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-41 Score=314.45 Aligned_cols=140 Identities=54% Similarity=0.917 Sum_probs=111.9
Q ss_pred CCcCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChh-hhHhhhhhhcCCCeeEeecCeeeee
Q psy5592 2 QRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDD-TSKFNKNLRDRVPFAVVGSNTVVEI 80 (257)
Q Consensus 2 K~L~~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e-~~~~~~~l~~~~PFAVVgS~~~~~~ 80 (257)
+.|+..+|+|||++|+|++++.++..+|..|...+..+||++|.++....++++ -......+...+|||||||+..+++
T Consensus 169 ~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~~vv~s~~~~~~ 248 (361)
T 2qag_A 169 KAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEA 248 (361)
T ss_dssp HHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHHHHHHHHHTCSCEECCCSEEC--
T ss_pred HHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHHHHHHHHhcCCCCEeCCCCcccc
Confidence 467789999999999999999999999999999999999999998854322222 3456778889999999999999999
Q ss_pred CCeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhhhhHHHhHHHHhhcCCC
Q psy5592 81 DGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSNVHYENFRCRKLAGLGT 142 (257)
Q Consensus 81 ~g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~~~YE~YRt~kL~~~~~ 142 (257)
+|+.++||.||||+|+|+|++||||+.||++|| |||+||++.|+++|||+||+++|..++.
T Consensus 249 ~g~~~~gr~ypwg~~~ven~~h~df~~Lr~~l~-~~~~dl~~~t~~~~ye~yr~~~l~~~~~ 309 (361)
T 2qag_A 249 KGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGR 309 (361)
T ss_dssp ----CEEECCSSCCEESSCC-CCTHHHHHHHHH-HCCGGGTHHHHTTTHHHHHTTTC-----
T ss_pred CCeEEEEEecCCceEecCCCccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999 9999999999999999999999998764
No 6
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=100.00 E-value=1.8e-39 Score=289.04 Aligned_cols=136 Identities=68% Similarity=1.181 Sum_probs=112.1
Q ss_pred CCcCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCeeeeeC
Q psy5592 2 QRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTVVEID 81 (257)
Q Consensus 2 K~L~~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~~~~~ 81 (257)
+.|+..+|+|||++|+|++++.++..++..|++.+..+||++|.|+.. +++........|...+|||||||+..+..+
T Consensus 139 ~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~--~~~~~~~l~~~l~~~~p~~vv~s~~~~~~~ 216 (274)
T 3t5d_A 139 KRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPET--DDEEENKLVKKIKDRLPLAVVGSNTIIEVN 216 (274)
T ss_dssp HHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-------------CHHHHHTCSEECCCCCCC----
T ss_pred HHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCC--CChhHHHHHHHHhcCCCcEEEEeeeEEeeC
Confidence 456668999999999999999999999999999999999999999864 334445667888999999999999999999
Q ss_pred CeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhhhhHHHhHHHHhhc
Q psy5592 82 GKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSNVHYENFRCRKLAG 139 (257)
Q Consensus 82 g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~~~YE~YRt~kL~~ 139 (257)
|..+|||.||||+|+|+|+.||||..||++||+|||+||++.|++.|||+||+++|++
T Consensus 217 ~~~~~~r~y~wg~~~ve~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~yr~~~l~~ 274 (274)
T 3t5d_A 217 GKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAA 274 (274)
T ss_dssp ----CEEECSSCEEESSCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred CeEEEeeecccceEEecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999974
No 7
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.03 E-value=1.9e-06 Score=75.68 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=52.0
Q ss_pred cceeeeeecCCCCCHH--HHHHHHHHHHHHHHh---CCCccccCCCCCCCChhhhHhhhhhhcCCCeeEeecCeee--ee
Q psy5592 8 VNIIPVIAKADTMTPE--ECALFKKQILSEIAQ---HKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTVV--EI 80 (257)
Q Consensus 8 VNIIPVIaKADtLT~~--El~~fK~~I~~~l~~---~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAVVgS~~~~--~~ 80 (257)
+++|+|++|+|..+++ ++..|...+...|.. ++..++... -...+||+||++...+ ..
T Consensus 155 ~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------~~~~~p~~~v~~~~~~~~~~ 219 (270)
T 1h65_A 155 NKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDA---------------QASDIPVVLIENSGRCNKND 219 (270)
T ss_dssp GGEEEEEECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTTS---------------GGGCCCEEECCCCTTCCBCT
T ss_pred cCEEEEEECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhhh---------------hhccCCEEEEeCCCcccccC
Confidence 6999999999998876 577777766666554 233332211 0346899999998643 34
Q ss_pred CCeeeecccCCcee
Q psy5592 81 DGKKVRGRKYPWGI 94 (257)
Q Consensus 81 ~g~~vrgR~YpWG~ 94 (257)
.|+.|++|.||||.
T Consensus 220 ~~~~v~~~~~~w~~ 233 (270)
T 1h65_A 220 SDEKVLPNGIAWIP 233 (270)
T ss_dssp TSCBBCTTSCBHHH
T ss_pred CCceECCCCCCcHH
Confidence 68899999999997
No 8
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.72 E-value=0.00087 Score=60.43 Aligned_cols=55 Identities=25% Similarity=0.291 Sum_probs=41.0
Q ss_pred hhhhcCCCeeEeecCeeeeeCCeeeecccCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhh
Q psy5592 61 KNLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVT 124 (257)
Q Consensus 61 ~~l~~~~PFAVVgS~~~~~~~g~~vrgR~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T 124 (257)
..+...+||+|..+...++.++. |+.|+|++|.||++.||.++ |+..=.-||..-
T Consensus 203 ~~l~~eiP~~~~v~i~~~~~~~~---~~~~i~~~i~ve~~~~k~ii------ig~~g~~lk~i~ 257 (301)
T 1wf3_A 203 KRLWHEVPYAVATKVEEVAEREN---GVLYIKAILYVERPSQKAIV------IGEGGRKIKEIG 257 (301)
T ss_dssp HTCCTTHHHHCEEEEEEEEEETT---TEEEEEEEEEESSHHHHHHH------HCGGGHHHHHHH
T ss_pred HHhhcccCceEEEEEEEEEecCC---CeEEEEEEEEEeeCCceEEE------EeCCchHHHHHH
Confidence 34567899999988887765432 78999999999999997664 565555555543
No 9
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.97 E-value=0.067 Score=43.84 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=40.3
Q ss_pred CCCcceeeeeecCCCCCHHHHHHHHHHHHHHHH----hCCCccccCCCCCCCChhhhHhhhhhhcCCCeeE-eecCeeee
Q psy5592 5 HDKVNIIPVIAKADTMTPEECALFKKQILSEIA----QHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAV-VGSNTVVE 79 (257)
Q Consensus 5 ~~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~----~~~I~iy~fp~~~~dd~e~~~~~~~l~~~~PFAV-VgS~~~~~ 79 (257)
...+.+|.|+.|+|..+..++...+..+..++. .+++.+|.......+++........+....+|.+ +.++.+..
T Consensus 118 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~l~~~~~f~~~~~~~~v~~ 197 (218)
T 1nrj_B 118 ENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFANLEASVVA 197 (218)
T ss_dssp TTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CTTC----CCCGGGSSSCEEE
T ss_pred cCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccchhhhcccccCCCCccccccCCceEE
Confidence 356789999999999987666655555544433 3466666544322122222223334444577876 55555555
Q ss_pred eCCeeee
Q psy5592 80 IDGKKVR 86 (257)
Q Consensus 80 ~~g~~vr 86 (257)
+.|....
T Consensus 198 ~~~s~~~ 204 (218)
T 1nrj_B 198 FEGSINK 204 (218)
T ss_dssp EECBTTT
T ss_pred EeccccC
Confidence 5554443
No 10
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=83.88 E-value=8.3 Score=30.01 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=13.0
Q ss_pred hhHHHhHHHHhhcCC
Q psy5592 127 VHYENFRCRKLAGLG 141 (257)
Q Consensus 127 ~~YE~YRt~kL~~~~ 141 (257)
.-||.|++++|.+|+
T Consensus 17 e~YE~~h~ErL~~mS 31 (104)
T 3s9g_A 17 ETYERYHTESLQNMS 31 (104)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhcc
Confidence 479999999999873
No 11
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=70.87 E-value=3.6 Score=32.06 Aligned_cols=41 Identities=15% Similarity=0.094 Sum_probs=32.8
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHHHh-CCCccccCC
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEIAQ-HKIEIYQFP 47 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~-~~I~iy~fp 47 (257)
.+++|.|+.|+|.+++.++......+...+.. +++++|...
T Consensus 133 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (195)
T 3pqc_A 133 NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTS 174 (195)
T ss_dssp TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECC
T ss_pred CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEe
Confidence 47899999999999998888888888888777 446666544
No 12
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=70.48 E-value=4.4 Score=32.74 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=27.2
Q ss_pred CCcceeeeeecCCCCCHHHHHHHHHHHHHHHHh
Q psy5592 6 DKVNIIPVIAKADTMTPEECALFKKQILSEIAQ 38 (257)
Q Consensus 6 ~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~ 38 (257)
..+++|.|+.|+|.++..++......+.+.+..
T Consensus 143 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 143 TGKPIHSLLTKCDKLTRQESINALRATQKSLDA 175 (223)
T ss_dssp GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence 357899999999999999888877777777765
No 13
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=66.98 E-value=76 Score=29.25 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy5592 174 DMEQVFEMKVKEKKQKLKDSEID----------MKKSLEAQIKELEEKRRGLELEISQWEQS 225 (257)
Q Consensus 174 em~~vF~~kv~eke~kl~~~e~e----------~~~~l~~q~~~leek~~~le~e~~~~~~~ 225 (257)
...+.+++++.+-+..|.+.|+. |+..|+++...-+.+..+||.|+..+++.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHK 458 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888999999999988887 67777776666556666677777666655
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.90 E-value=58 Score=30.76 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHHHHH
Q psy5592 156 QMEEEKREHEAKMKKM 171 (257)
Q Consensus 156 ~~eee~~~~~~kl~k~ 171 (257)
+++++....++.++.+
T Consensus 467 ~l~~~~~~~~~~l~~~ 482 (597)
T 3oja_B 467 QLTNEQIQQEQLLQGL 482 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 15
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=65.09 E-value=16 Score=35.77 Aligned_cols=8 Identities=25% Similarity=0.846 Sum_probs=5.0
Q ss_pred ccCCceee
Q psy5592 88 RKYPWGIA 95 (257)
Q Consensus 88 R~YpWG~v 95 (257)
-.|||.-|
T Consensus 238 ~~f~w~~I 245 (575)
T 2i1j_A 238 IGFPWSEI 245 (575)
T ss_dssp EEEEGGGE
T ss_pred eEecHHHh
Confidence 45899443
No 16
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=64.46 E-value=39 Score=29.13 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 157 MEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKR 212 (257)
Q Consensus 157 ~eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~ 212 (257)
+-++..+....=..+|.+|-+-|..-+.||+.|+ ++++..|..+.++.|+.+
T Consensus 158 l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KI----R~lq~~Ll~~~~~~~~~~ 209 (213)
T 1ik9_A 158 VQGRFEKAVSAKEALETDLYKRFILVLNEKKTKI----RSLHNKLLNAAQEREKDI 209 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHhhhhh
Confidence 3445555666677899999999999999999999 445555666666666544
No 17
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=62.61 E-value=5.9 Score=31.07 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=30.4
Q ss_pred CCcceeeeeecCCCCCHHHHHHHHHHHHHHHHh-CCCccccCC
Q psy5592 6 DKVNIIPVIAKADTMTPEECALFKKQILSEIAQ-HKIEIYQFP 47 (257)
Q Consensus 6 ~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~-~~I~iy~fp 47 (257)
..+++|.|+.|+|.+...++......+.+.+.. +++++|...
T Consensus 133 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (195)
T 1svi_A 133 YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEE
Confidence 357899999999999988887777777776654 355665443
No 18
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=60.41 E-value=35 Score=33.63 Aligned_cols=17 Identities=18% Similarity=0.088 Sum_probs=7.9
Q ss_pred HHHHHHHhC--CCccccCC
Q psy5592 31 QILSEIAQH--KIEIYQFP 47 (257)
Q Consensus 31 ~I~~~l~~~--~I~iy~fp 47 (257)
.++..|... .+..|.||
T Consensus 221 ~~R~~I~~~F~~~~cf~lp 239 (592)
T 1f5n_A 221 LPRLCIRKFFPKKKCFVFD 239 (592)
T ss_dssp HHHHHHHHHCSCEEEEECC
T ss_pred hHHHHHHHhCCCCcEEEeC
Confidence 344444442 34455554
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.53 E-value=1.1e+02 Score=28.73 Aligned_cols=9 Identities=33% Similarity=0.276 Sum_probs=4.0
Q ss_pred chHHHHHHH
Q psy5592 104 DFIALRNML 112 (257)
Q Consensus 104 DF~~LR~~L 112 (257)
+...+..++
T Consensus 397 ~~~~~~~~~ 405 (597)
T 3oja_B 397 DKPYLDRLL 405 (597)
T ss_dssp SSHHHHHHH
T ss_pred CccchhHHH
Confidence 444444443
No 20
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=54.95 E-value=12 Score=36.63 Aligned_cols=19 Identities=21% Similarity=0.599 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5592 159 EEKREHEAKMKKMEVDMEQ 177 (257)
Q Consensus 159 ee~~~~~~kl~k~E~em~~ 177 (257)
.++.+.+.+|+.+|+++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~ 353 (575)
T 2i1j_A 335 KKQQEYQDRLRQMQEEMER 353 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3334444455555555444
No 21
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=50.56 E-value=3.3 Score=39.41 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHhh
Q psy5592 208 LEEKRRGLELEISQWEQS 225 (257)
Q Consensus 208 leek~~~le~e~~~~~~~ 225 (257)
++++++.||+.+..++..
T Consensus 375 ~~~~~~~le~~~~~~~~~ 392 (427)
T 2qag_B 375 HQDEKKKLEDKKKSLDDE 392 (427)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555444444
No 22
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=50.54 E-value=1e+02 Score=25.30 Aligned_cols=35 Identities=31% Similarity=0.482 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q psy5592 177 QVFEMKVKEKKQKLKDSEID------MKKSLEAQIKELEEK 211 (257)
Q Consensus 177 ~vF~~kv~eke~kl~~~e~e------~~~~l~~q~~~leek 211 (257)
..|+.+++.-..+|+++|.. .-..|+..+..||+.
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~ 113 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777888888888877765 223355555555544
No 23
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=49.78 E-value=99 Score=30.43 Aligned_cols=21 Identities=5% Similarity=0.017 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhC
Q psy5592 19 TMTPEECALFKKQILSEIAQH 39 (257)
Q Consensus 19 tLT~~El~~fK~~I~~~l~~~ 39 (257)
++|-..+..+=+...+.|...
T Consensus 287 ~vtG~~L~~l~~~yv~ain~g 307 (592)
T 1f5n_A 287 QVNGPRLESLVLTYVNAISSG 307 (592)
T ss_dssp ECBHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHhCC
Confidence 444444444444444444443
No 24
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=49.12 E-value=77 Score=23.35 Aligned_cols=69 Identities=29% Similarity=0.286 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy5592 155 AQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWEQS 225 (257)
Q Consensus 155 ~~~eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~~~~~~ 225 (257)
+..+++....+.+++++...+... +...++-+.+......+ +..|..|+.+.|+++..|...+..++..
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~-e~~rkele~~~~~l~~e-k~~L~~ql~eaEe~~~~L~~~K~eLE~~ 78 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKT-ERIKKELEEQNVTLLEQ-KNDLFGSMKQLEDKVEELLSKNYHLENE 78 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666555432 12222333333222222 1223334666666666666666555544
No 25
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=46.69 E-value=1.4e+02 Score=25.46 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 157 MEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEID 196 (257)
Q Consensus 157 ~eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~e 196 (257)
+|.++...+.+.+.......+. ...+..+..|+..+-.+
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L-~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRL-KYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4444444444444444444332 23455666666666555
No 26
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=45.99 E-value=86 Score=27.61 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=27.3
Q ss_pred cCCceeeeecCCccCchHHHHHHHHHhhHHHHHHhhhhhhHHHhHHH
Q psy5592 89 KYPWGIAEVENLEHCDFIALRNMLIRTNLQDLKDVTSNVHYENFRCR 135 (257)
Q Consensus 89 ~YpWG~veVeN~~HcDF~~LR~~Li~thl~dLkd~T~~~~YE~YRt~ 135 (257)
-+.||.-+ +++-+|-.-==-.|+ .|+-++-+.= ..+|+.||..
T Consensus 53 Ls~WG~~e--dddl~DIsdklgvLl-~e~ge~e~~~-a~~~d~yR~~ 95 (234)
T 3plt_A 53 LSLWGADN--DDDVSDVTDKLGVLI-YELGELQDQF-IDKYDQYRVT 95 (234)
T ss_dssp HHHHHHTS--CHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHhcCC--CchHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHH
Confidence 36799875 455555433222333 5777776654 5799999976
No 27
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=44.52 E-value=79 Score=23.89 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q psy5592 195 IDMKKSLEAQIKELEEKRRGLELE 218 (257)
Q Consensus 195 ~e~~~~l~~q~~~leek~~~le~e 218 (257)
..|+..|+++....-+|.++||++
T Consensus 54 lRMQEeldAqAe~~keKQkqlEEe 77 (89)
T 2q2f_A 54 LKMQEELNAQVEKHKEKLKQLEEE 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555554
No 28
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=43.73 E-value=80 Score=26.25 Aligned_cols=25 Identities=20% Similarity=0.342 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 166 AKMKKMEVDMEQVFEMKVKEKKQKLKDSE 194 (257)
Q Consensus 166 ~kl~k~E~em~~vF~~kv~eke~kl~~~e 194 (257)
++|+..|..|.++= +.|++||+++|
T Consensus 12 e~L~~~e~l~~el~----~tWeeKl~~te 36 (184)
T 4egx_A 12 ERLKETEKIIAELN----ETWEEKLRRTE 36 (184)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----hHHHHHHHHHH
Confidence 35555555554421 23566665443
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=42.67 E-value=1.7e+02 Score=30.82 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHHHHHHHh
Q psy5592 207 ELEEKRRGLELEISQWEQ 224 (257)
Q Consensus 207 ~leek~~~le~e~~~~~~ 224 (257)
+|+++...|+.+...++.
T Consensus 1020 ~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 30
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=41.68 E-value=1e+02 Score=22.89 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHhhHHHHHHhhhhhhHHHhHHHHhhcCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 112 LIRTNLQDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKNPLAQMEEEKREHEAKMKKMEVDMEQV 178 (257)
Q Consensus 112 Li~thl~dLkd~T~~~~YE~YRt~kL~~~~~~~~~~~~~~~p~~~~eee~~~~~~kl~k~E~em~~v 178 (257)
||.++-+|+..++.++ +.+|..... ..+..-+.-+...+....+-.+=|..|+.|++.+
T Consensus 2 lF~~YE~df~~~~~~i------~~~l~~~~~--~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 2 LLISYESDFKTTLEQA------KASLAEAPS--QPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHGGG--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH------HHHHHHHhc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5666777777666553 223333210 0000001123445555556666677777777665
No 31
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=41.61 E-value=23 Score=28.06 Aligned_cols=43 Identities=7% Similarity=0.092 Sum_probs=28.2
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCC
Q psy5592 8 VNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGG 50 (257)
Q Consensus 8 VNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~ 50 (257)
+.++.|..|+|.++..+.+..-..++..+...++.+..+|.+.
T Consensus 138 ~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 180 (210)
T 1pui_A 138 IAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSS 180 (210)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBT
T ss_pred CCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEee
Confidence 4567788999999988766544556666666554444455543
No 32
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=40.88 E-value=1.1e+02 Score=22.58 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q psy5592 197 MKKSLEAQIKELEEKRRGLEL 217 (257)
Q Consensus 197 ~~~~l~~q~~~leek~~~le~ 217 (257)
+...|.++..+||.+.+.|+.
T Consensus 64 ~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 64 KVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555433
No 33
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.83 E-value=1.2e+02 Score=22.84 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5592 182 KVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEIS 220 (257)
Q Consensus 182 kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~ 220 (257)
++..-+.++++.+....+ .+.++..|.-+...+|.++.
T Consensus 24 rae~~e~~~k~~e~~~~~-~E~Ei~sL~kk~~~lE~eld 61 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQ-LEDDIVQLEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333111 33334444444444444433
No 34
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=39.15 E-value=67 Score=28.13 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=26.8
Q ss_pred CCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCC
Q psy5592 6 DKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFP 47 (257)
Q Consensus 6 ~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp 47 (257)
..+.+|-|+.|+|.+++.+... ...+.......|+++|...
T Consensus 109 ~~~~~ilV~NK~DL~~~~~v~~-~~~~~~~~~~~g~~~~~~S 149 (302)
T 2yv5_A 109 FKVEPVIVFNKIDLLNEEEKKE-LERWISIYRDAGYDVLKVS 149 (302)
T ss_dssp TTCEEEEEECCGGGCCHHHHHH-HHHHHHHHHHTTCEEEECC
T ss_pred CCCCEEEEEEcccCCCccccHH-HHHHHHHHHHCCCeEEEEE
Confidence 3467889999999998864321 2234455566788776543
No 35
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=39.13 E-value=15 Score=29.56 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=42.6
Q ss_pred CCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccc-cCCCCCCCChhhhHhhhhhh----cCCCeeEeecCeeeee
Q psy5592 6 DKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIY-QFPPGGSSEDDTSKFNKNLR----DRVPFAVVGSNTVVEI 80 (257)
Q Consensus 6 ~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy-~fp~~~~dd~e~~~~~~~l~----~~~PFAVVgS~~~~~~ 80 (257)
.-|-||||= | +...|=+.|...|...||.+= +++.. ...++..|+ ..+||.+|.+...++.
T Consensus 9 ~Qv~IlpVs---~-----~~~~YA~~V~~~L~~~GiRvevD~~r~------~e~Lg~kIR~a~~~kvPy~lVVG~kE~e~ 74 (130)
T 1v95_A 9 VDCSVIVVN---K-----QTKDYAESVGRKVRDLGMVVDLIFLNT------EVSLSQALEDVSRGGSPFAIVITQQHQIH 74 (130)
T ss_dssp CTEEEEESS---S-----GGGHHHHHHHHHHHTTTCCEEEEECTT------SSCHHHHHHHHHHHTCSEEEEECHHHHHH
T ss_pred CeEEEEEeC---c-----chHHHHHHHHHHHHHCCCEEEEecCCC------CCcHHHHHHHHHHcCCCEEEEEechHHhc
Confidence 357789983 2 244777889999999999873 12210 123444444 5799998887766554
Q ss_pred CCeeeec
Q psy5592 81 DGKKVRG 87 (257)
Q Consensus 81 ~g~~vrg 87 (257)
+.-.||-
T Consensus 75 ~sVsVR~ 81 (130)
T 1v95_A 75 RSCTVNI 81 (130)
T ss_dssp TEEEEEE
T ss_pred CeeEEEe
Confidence 4434443
No 36
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.79 E-value=41 Score=31.66 Aligned_cols=53 Identities=26% Similarity=0.391 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5592 169 KKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQW 222 (257)
Q Consensus 169 ~k~E~em~~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~~~ 222 (257)
...|..+++.|++++++.+.++++....++ .|+.|+..|..+.+.+++|+..+
T Consensus 13 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~~~e~~~l 65 (405)
T 4b4t_J 13 ETHESGIKPYFEQKIQETELKIRSKTENVR-RLEAQRNALNDKVRFIKDELRLL 65 (405)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556667777777777766655444433 36666677776666666666543
No 37
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=36.00 E-value=1.2e+02 Score=21.84 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy5592 177 QVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWEQ 224 (257)
Q Consensus 177 ~vF~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~~~~~ 224 (257)
+.++..|...+..|.+..++|...+. +-.+|=.-+-.|+.||+.|.+
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~-EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLD-EYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33556667777777777777766544 344555566779999999863
No 38
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.96 E-value=1.2e+02 Score=29.88 Aligned_cols=11 Identities=9% Similarity=0.311 Sum_probs=7.4
Q ss_pred HHHHHHHHHhh
Q psy5592 106 IALRNMLIRTN 116 (257)
Q Consensus 106 ~~LR~~Li~th 116 (257)
+.|+.+|+.+.
T Consensus 49 CrLQglLdkqE 59 (562)
T 3ghg_A 49 CRMKGLIDEVN 59 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred cchhhhHHhhc
Confidence 46778887654
No 39
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=35.92 E-value=1.9e+02 Score=24.13 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy5592 165 EAKMKKMEVDME---QVFEMKVKEKKQKLKD 192 (257)
Q Consensus 165 ~~kl~k~E~em~---~vF~~kv~eke~kl~~ 192 (257)
.++++|..+||. +.++..++|-..++..
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~ 59 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESLNRELQERNRI 59 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677766666 3445555554444433
No 40
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=34.54 E-value=1.6e+02 Score=22.91 Aligned_cols=56 Identities=25% Similarity=0.357 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHhHHHHHHHHHhhh---hcchHHHHhh
Q psy5592 181 MKVKEKKQKLKDSEID-------MKKSL---EAQIKELEEKRRGLELEISQWEQSN---GVSMDELRRR 236 (257)
Q Consensus 181 ~kv~eke~kl~~~e~e-------~~~~l---~~q~~~leek~~~le~e~~~~~~~~---~~~~~~l~~~ 236 (257)
..|.+|..|+..+..+ |++.+ ......|-.+.|.||..=.++++.. ..|++++..+
T Consensus 17 ~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k 85 (111)
T 2v66_B 17 YEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQR 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence 3566688888888776 33333 3355566667777777777777654 4456666654
No 41
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=32.69 E-value=35 Score=31.10 Aligned_cols=33 Identities=27% Similarity=0.159 Sum_probs=27.6
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHHHhCC
Q psy5592 8 VNIIPVIAKADTMTPEECALFKKQILSEIAQHK 40 (257)
Q Consensus 8 VNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~ 40 (257)
.++|.|+.|+|..+.++.......|.+.+...+
T Consensus 130 ~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~ 162 (403)
T 3sjy_A 130 KNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW 162 (403)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTST
T ss_pred CCEEEEEECccccchHHHHHHHHHHHHHHHhhC
Confidence 378999999999999998888888887776654
No 42
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=31.37 E-value=43 Score=31.61 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=28.5
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHHHhC
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEIAQH 39 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~ 39 (257)
.+.+|.|+.|+|...++.+......+.+.+...
T Consensus 125 ~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~ 157 (482)
T 1wb1_A 125 NIPIIVVITKSDNAGTEEIKRTEMIMKSILQST 157 (482)
T ss_dssp TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEECCCcccchhHHHHHHHHHHHHhhh
Confidence 366799999999999888888888888888877
No 43
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.07 E-value=1.5e+02 Score=21.48 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q psy5592 201 LEAQIKELEEKRRGLELEISQW 222 (257)
Q Consensus 201 l~~q~~~leek~~~le~e~~~~ 222 (257)
|+.++.+.++..+.|..++..|
T Consensus 45 LEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444433
No 44
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=30.86 E-value=88 Score=28.69 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=27.3
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCC
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFP 47 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp 47 (257)
...+|-|+.|+|.+++++.... ..+...+...|++++...
T Consensus 160 ~~~~iivlNK~DL~~~~~~~~~-~~~~~~y~~~G~~v~~~S 199 (358)
T 2rcn_A 160 QVEPLIVLNKIDLLDDEGMDFV-NEQMDIYRNIGYRVLMVS 199 (358)
T ss_dssp TCEEEEEEECGGGCCHHHHHHH-HHHHHHHHTTTCCEEECB
T ss_pred CCCEEEEEECccCCCchhHHHH-HHHHHHHHhCCCcEEEEe
Confidence 3567889999999998764323 334456677788876543
No 45
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=30.78 E-value=17 Score=27.13 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=22.6
Q ss_pred eecccCCceeeeec----CCc------c--------CchHHHHHHHHHhhHHHHHH
Q psy5592 85 VRGRKYPWGIAEVE----NLE------H--------CDFIALRNMLIRTNLQDLKD 122 (257)
Q Consensus 85 vrgR~YpWG~veVe----N~~------H--------cDF~~LR~~Li~thl~dLkd 122 (257)
.+.++||||.|+|. +.. . .|...|-+.|.++-..+|..
T Consensus 9 ~~~~kf~~G~v~v~l~v~~G~I~~vki~GDFf~~p~~~i~~le~~L~G~~~~~i~~ 64 (91)
T 3r07_C 9 SKNWKAKKGLIRVTLDLDGNRIKDIHISGDFFMFPEDSINRLEDMLRGSSIEKIND 64 (91)
T ss_dssp EEEEECSSCEEEEEEEEETTEEEEEEEEEEBCCBSTTHHHHHHHHHTTSBTTSHHH
T ss_pred EEEEEcCCcEEEEEEEEcCCEEEEEEEEcccCCCcchhHHHHHHHHCCCCHHHHHH
Confidence 45678999998764 221 1 23556666776655554433
No 46
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=30.62 E-value=11 Score=35.55 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHhh
Q psy5592 177 QVFEMKVKEKKQKL--------KDSEIDMKKSLEA-------QIKELEEKRRGLELEISQWEQS 225 (257)
Q Consensus 177 ~vF~~kv~eke~kl--------~~~e~e~~~~l~~-------q~~~leek~~~le~e~~~~~~~ 225 (257)
+.+..+.+++|.++ ++.|..+++.-.+ ..+.|+++.++||+.+..++..
T Consensus 325 ~~~~~~~~~~e~~~~~~f~~~v~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 388 (418)
T 2qag_C 325 REHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDE 388 (418)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666664444 3444444443222 2245555555555555555544
No 47
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=29.63 E-value=87 Score=30.35 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=38.0
Q ss_pred CcceeeeeecCCCCCH---HHHHHHHHHHHHHHHhC-CCccccCCCCCCCChhh--hHhhhhhhcCCCeeEeecCe
Q psy5592 7 KVNIIPVIAKADTMTP---EECALFKKQILSEIAQH-KIEIYQFPPGGSSEDDT--SKFNKNLRDRVPFAVVGSNT 76 (257)
Q Consensus 7 rVNIIPVIaKADtLT~---~El~~fK~~I~~~l~~~-~I~iy~fp~~~~dd~e~--~~~~~~l~~~~PFAVVgS~~ 76 (257)
.|=||||-.| |..+. +++..+=..|.+.|..+ ||.+.- ++ .++.. .+....-...+||.||-+..
T Consensus 301 qV~IiPi~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~--Dd--r~~~s~G~K~~~ael~GvP~~i~vG~k 371 (518)
T 3ial_A 301 HVVIIPIGCG-KKNNQESDQQVLGKVNEIADTLKSKLGLRVSI--DD--DFSKSMGDKLYYYELKGVPLRIEVGQR 371 (518)
T ss_dssp SEEEEEESCS-CTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEE--CC--CTTSCHHHHHHHHHHTTCSEEEEEEHH
T ss_pred EEEEEEeecC-ccccccchHHHHHHHHHHHHHHHhccCeEEEE--EC--CCCCCHHHHHHHHHHcCCCEEEEECcc
Confidence 4778998754 33332 45667777899999999 998852 10 00111 12222222368998865543
No 48
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=29.44 E-value=1.8e+02 Score=21.70 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q psy5592 182 KVKEKKQKLKDSEI 195 (257)
Q Consensus 182 kv~eke~kl~~~e~ 195 (257)
++..-+.++++.+.
T Consensus 24 ~ae~~e~~~k~~e~ 37 (101)
T 3u59_A 24 RAEQAEADKKQAED 37 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 49
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=28.63 E-value=2.4e+02 Score=23.06 Aligned_cols=43 Identities=23% Similarity=0.450 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcchHHHHhhhhhcc
Q psy5592 197 MKKSLEAQIKELEEKRRGLELEISQWEQSNGVSMDELRRRSLERD 241 (257)
Q Consensus 197 ~~~~l~~q~~~leek~~~le~e~~~~~~~~~~~~~~l~~~~l~~~ 241 (257)
.++.++.++..|+.+..+|+.+...++..++.| +-++++|.++
T Consensus 81 akk~~ea~la~l~~~~~~LeAE~aKLeEekQIs--eASRqgLrRD 123 (146)
T 2xnx_M 81 LLGNAKLELDQLSSEKEQLTIEKAKLEEEKQIS--DASRQSLRRD 123 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC------------
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence 445566777788888888888888888776533 3445555544
No 50
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.39 E-value=2.7e+02 Score=23.55 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy5592 156 QMEEEKREHEAKMKKMEVDMEQ 177 (257)
Q Consensus 156 ~~eee~~~~~~kl~k~E~em~~ 177 (257)
+++++..++..-=+.+|++|++
T Consensus 28 ~le~El~EFqesSrELE~ELE~ 49 (189)
T 2v71_A 28 EARDELVEFQEGSRELEAELEA 49 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 51
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.34 E-value=2e+02 Score=26.68 Aligned_cols=40 Identities=33% Similarity=0.482 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5592 183 VKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWE 223 (257)
Q Consensus 183 v~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~~~~ 223 (257)
+.+.++.+++.+.+++. +.++..+-|..||.|-.++.+..
T Consensus 19 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 19 IAALKEKIKDTELGMKE-LNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455555555544433 44455555666666655555544
No 52
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Probab=27.84 E-value=38 Score=32.05 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=35.0
Q ss_pred eeeeeecCC---CCCHHHHHHHHHHHHHHHHhCCC-ccccCCCCC
Q psy5592 10 IIPVIAKAD---TMTPEECALFKKQILSEIAQHKI-EIYQFPPGG 50 (257)
Q Consensus 10 IIPVIaKAD---tLT~~El~~fK~~I~~~l~~~~I-~iy~fp~~~ 50 (257)
|+||=+|-= .|+.+..+.+=..|+..|..+|+ +|++|...+
T Consensus 296 i~PVNgkWydytGl~~e~r~~~~~KIk~~l~s~Gf~~i~D~s~~~ 340 (407)
T 3bma_A 296 IPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDG 340 (407)
T ss_dssp ECCCCHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCCCEEECTTCT
T ss_pred EeCCchHHHHhcCCCHHHHHHHHHHHHHHHHHCCCcceeeccccC
Confidence 567777643 59999999999999999999999 999998753
No 53
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=27.70 E-value=65 Score=29.25 Aligned_cols=38 Identities=24% Similarity=0.142 Sum_probs=27.9
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHHHh---CCCcccc
Q psy5592 8 VNIIPVIAKADTMTPEECALFKKQILSEIAQ---HKIEIYQ 45 (257)
Q Consensus 8 VNIIPVIaKADtLT~~El~~fK~~I~~~l~~---~~I~iy~ 45 (257)
.++|.|+.|+|....++.......|.+.+.. .+++++.
T Consensus 138 ~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~ 178 (410)
T 1kk1_A 138 KNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIP 178 (410)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEE
T ss_pred CcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEE
Confidence 4689999999999988776666677766664 3555553
No 54
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=27.17 E-value=51 Score=32.55 Aligned_cols=68 Identities=19% Similarity=0.332 Sum_probs=42.0
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhhhhh----hcCCCeeEeecCeeeeeCC
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNL----RDRVPFAVVGSNTVVEIDG 82 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~~~l----~~~~PFAVVgS~~~~~~~g 82 (257)
.|=||||- ++...+=..|.+.|..+||.+.- |+ .......++ ...+||+||-+...++.+-
T Consensus 541 qv~vipi~--------~~~~~~a~~v~~~L~~~Gi~v~~------D~-~~~~~g~kir~a~~~g~p~~ivvG~~E~~~~~ 605 (642)
T 1qf6_A 541 QVVIMNIT--------DSQSEYVNELTQKLSNAGIRVKA------DL-RNEKIGFKIREHTLRRVPYMLVCGDKEVESGK 605 (642)
T ss_dssp CEEEEESS--------HHHHHHHHHHHHHHHTTTCCEEE------EC-CSSCHHHHHHHHHHTTCSEEEEECTTTGGGCC
T ss_pred eEEEEEeC--------HHHHHHHHHHHHHHHhCCCEEEE------EC-CCCCHHHHHHHHHHcCCCEEEEECchhhhcCe
Confidence 46788873 56677778999999999998742 11 111223333 3469999877666554443
Q ss_pred eeeeccc
Q psy5592 83 KKVRGRK 89 (257)
Q Consensus 83 ~~vrgR~ 89 (257)
-.||.|.
T Consensus 606 V~vr~r~ 612 (642)
T 1qf6_A 606 VAVRTRR 612 (642)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 3444443
No 55
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=25.91 E-value=3.3e+02 Score=28.71 Aligned_cols=8 Identities=38% Similarity=0.729 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q psy5592 26 ALFKKQIL 33 (257)
Q Consensus 26 ~~fK~~I~ 33 (257)
..||..+.
T Consensus 660 ~~f~~~l~ 667 (1184)
T 1i84_S 660 QLYKEQLT 667 (1184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34665443
No 56
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=25.68 E-value=44 Score=32.26 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.9
Q ss_pred CcceeeeeecCCCCCHHHHHHHHHHHH
Q psy5592 7 KVNIIPVIAKADTMTPEECALFKKQIL 33 (257)
Q Consensus 7 rVNIIPVIaKADtLT~~El~~fK~~I~ 33 (257)
.+++|.|++|+|.++.+++..+...++
T Consensus 218 ~~pvilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp GGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCccCHHHHHHHHHHhh
Confidence 478999999999999999988887776
No 57
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.46 E-value=3.2e+02 Score=23.35 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5592 154 LAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEI 195 (257)
Q Consensus 154 ~~~~eee~~~~~~kl~k~E~em~~vF~~kv~eke~kl~~~e~ 195 (257)
+..+..++.....+....|.++..+. .++.+++..+...+.
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~-e~ie~~~~~l~~~~~ 132 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQ-NEIKRKSEKQEDLKK 132 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44455555555555666665555433 344444444443333
No 58
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=25.39 E-value=1.3e+02 Score=19.63 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhh
Q psy5592 201 LEAQIKELEEKRRGLELEISQWEQSN 226 (257)
Q Consensus 201 l~~q~~~leek~~~le~e~~~~~~~~ 226 (257)
|+...++||.+-..||+-++-+...+
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444444444444444444444444
No 59
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=24.05 E-value=1e+02 Score=22.66 Aligned_cols=26 Identities=38% Similarity=0.414 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy5592 199 KSLEAQIKELEEKRRGLELEISQWEQ 224 (257)
Q Consensus 199 ~~l~~q~~~leek~~~le~e~~~~~~ 224 (257)
+.|.+++++|+++..+||.|-.-+..
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778899999999999998766653
No 60
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=23.93 E-value=1.5e+02 Score=20.56 Aligned_cols=25 Identities=40% Similarity=0.666 Sum_probs=14.9
Q ss_pred HHHHHHHH-----HHHHHHHHHHhHHHHHH
Q psy5592 196 DMKKSLEA-----QIKELEEKRRGLELEIS 220 (257)
Q Consensus 196 e~~~~l~~-----q~~~leek~~~le~e~~ 220 (257)
++++..++ +.+..|+..+.|++++.
T Consensus 36 elkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 36 ELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp HHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 35555544 45666666667776664
No 61
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=22.94 E-value=83 Score=20.96 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q psy5592 19 TMTPEECALFKKQILSEIAQ 38 (257)
Q Consensus 19 tLT~~El~~fK~~I~~~l~~ 38 (257)
+.|..++..||+-|+.++..
T Consensus 3 ~~~~~dle~~KqEIL~E~Rk 22 (45)
T 1use_A 3 SSDYSDLQRVKQELLEEVKK 22 (45)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 57888899999988887654
No 62
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=22.70 E-value=55 Score=29.33 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=25.8
Q ss_pred CCcceeeeeecCCCCCHHHHHHHHHHHHHHHHhCCCccccC
Q psy5592 6 DKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQF 46 (257)
Q Consensus 6 ~rVNIIPVIaKADtLT~~El~~fK~~I~~~l~~~~I~iy~f 46 (257)
....+|-|+.|+|.+++.+....-+.+.+.....|.+++..
T Consensus 116 ~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~ 156 (307)
T 1t9h_A 116 NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLT 156 (307)
T ss_dssp TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEE
Confidence 34678889999999988663222233444555557666643
No 63
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.18 E-value=3e+02 Score=21.87 Aligned_cols=10 Identities=10% Similarity=0.464 Sum_probs=5.4
Q ss_pred HHHhhHHHHH
Q psy5592 112 LIRTNLQDLK 121 (257)
Q Consensus 112 Li~thl~dLk 121 (257)
++...|.+++
T Consensus 36 ~vd~km~ei~ 45 (138)
T 3hnw_A 36 YINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3455555555
No 64
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=21.95 E-value=97 Score=24.23 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=19.7
Q ss_pred CCCcceeeeeecCCCCCHHHHHHHHHHH
Q psy5592 5 HDKVNIIPVIAKADTMTPEECALFKKQI 32 (257)
Q Consensus 5 ~~rVNIIPVIaKADtLT~~El~~fK~~I 32 (257)
...+.+|-|..|+|.+.+++...-.+.|
T Consensus 127 ~~~~piilv~nK~Dl~~~~~~~~~~~~v 154 (196)
T 3llu_A 127 NPDMNFEVFIHKVDGLSDDHKIETQRDI 154 (196)
T ss_dssp CTTCEEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeccccCchhhhhHHHhHH
Confidence 3567899999999999876554333333
No 65
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=21.79 E-value=1.9e+02 Score=25.03 Aligned_cols=42 Identities=10% Similarity=0.162 Sum_probs=30.1
Q ss_pred CCCcceeeeeecCCCCCHHHHH----HHHHHHHHHHHhCC---CccccC
Q psy5592 5 HDKVNIIPVIAKADTMTPEECA----LFKKQILSEIAQHK---IEIYQF 46 (257)
Q Consensus 5 ~~rVNIIPVIaKADtLT~~El~----~fK~~I~~~l~~~~---I~iy~f 46 (257)
...+++|-|+.|+|...+++.. .....+.+-...+| +++|..
T Consensus 113 ~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 113 SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 3468999999999999977766 44456666666677 455543
No 66
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.68 E-value=3.3e+02 Score=24.75 Aligned_cols=9 Identities=11% Similarity=0.246 Sum_probs=4.5
Q ss_pred hcchHHHHh
Q psy5592 227 GVSMDELRR 235 (257)
Q Consensus 227 ~~~~~~l~~ 235 (257)
..+|.++..
T Consensus 73 ~~dC~~i~~ 81 (323)
T 1lwu_C 73 GKDCQQVVD 81 (323)
T ss_dssp CSSHHHHHT
T ss_pred CcCHHHHHh
Confidence 345555543
No 67
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=21.61 E-value=47 Score=27.29 Aligned_cols=41 Identities=7% Similarity=0.059 Sum_probs=19.0
Q ss_pred cceeeeeecCCCCCHHHHHHHH----HHHHHHHHhCCCccccCCC
Q psy5592 8 VNIIPVIAKADTMTPEECALFK----KQILSEIAQHKIEIYQFPP 48 (257)
Q Consensus 8 VNIIPVIaKADtLT~~El~~fK----~~I~~~l~~~~I~iy~fp~ 48 (257)
.++|.|+.|+|.+...++..+- ..+...+...|.+++.|..
T Consensus 146 ~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~ 190 (239)
T 3lxx_A 146 SFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNN 190 (239)
T ss_dssp GGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCT
T ss_pred ceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEEC
Confidence 3677788888877766555332 2344455555655554443
No 68
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=21.02 E-value=2e+02 Score=19.48 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy5592 180 EMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWEQ 224 (257)
Q Consensus 180 ~~kv~eke~kl~~~e~e~~~~l~~q~~~leek~~~le~e~~~~~~ 224 (257)
+.++...+..|.+..++|...+. +-.+|=.-+-.|+.|++.|.+
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~-eYq~LlniK~~Le~EIatYRk 49 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKK-LVGDLLNVKMALDIEIATYRK 49 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHH
Confidence 45666667777666666665543 334455566678899988863
No 69
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=20.96 E-value=1.3e+02 Score=23.33 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccCCCCCCCChhhhHhh----hhh----hcCCCeeEeecCeeeeeCCeeeecccCC
Q psy5592 22 PEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFN----KNL----RDRVPFAVVGSNTVVEIDGKKVRGRKYP 91 (257)
Q Consensus 22 ~~El~~fK~~I~~~l~~~~I~iy~fp~~~~dd~e~~~~~----~~l----~~~~PFAVVgS~~~~~~~g~~vrgR~Yp 91 (257)
+.||..|-. ..+.|..+||.|..|.-. .+......| +.| ...+|--+| ||+.+..-+||
T Consensus 26 d~eL~~~~~-~~~~lk~~Gi~V~RyNL~--~~P~~F~~N~~V~~~L~~~G~~~LP~~~V--------DGevv~~G~yP 92 (106)
T 3ktb_A 26 NPELMRIAV-VIESLKKQGIIVTRHNLR--DEPQVYVSNKTVNDFLQKHGADALPITLV--------DGEIAVSQTYP 92 (106)
T ss_dssp CHHHHHHHH-HHHHHHHTTCCCEEEETT--TCTTHHHHSHHHHHHHHTTCGGGCSEEEE--------TTEEEECSSCC
T ss_pred CHHHHHHHH-HHHHHHHCCCEEEEEccc--cChHHHhcCHHHHHHHHHcCcccCCEEEE--------CCEEEEeccCC
Confidence 356666654 456788899998776543 112222222 222 246776655 77888888888
No 70
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.03 E-value=3.1e+02 Score=21.28 Aligned_cols=42 Identities=31% Similarity=0.413 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHH-------H-HHHH---HHHHHHHHHHHHhHHHHHHHHHh
Q psy5592 183 VKEKKQKLKDSEID-------M-KKSL---EAQIKELEEKRRGLELEISQWEQ 224 (257)
Q Consensus 183 v~eke~kl~~~e~e-------~-~~~l---~~q~~~leek~~~le~e~~~~~~ 224 (257)
+-.-.|||++++.. + +..+ +.....|+.|..+|...+++.-+
T Consensus 51 L~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 51 LVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777766 2 3333 34677899999999888877654
Done!