RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5592
(257 letters)
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 218 bits (556), Expect = 3e-69
Identities = 94/261 (36%), Positives = 155/261 (59%), Gaps = 12/261 (4%)
Query: 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFN 60
M++L KVNIIP+IAKAD ++ E FK +I SE+ + ++IYQFP + ++ ++ N
Sbjct: 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFP---TDDESVAEIN 226
Query: 61 KNLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDL 120
+ +PFAV+GS ++I K +R R+YPWG +VEN HCDF+ LR MLIR N++DL
Sbjct: 227 GTMNAHLPFAVIGSTEELKIGNKMMRARQYPWGTVQVENEAHCDFVKLREMLIRVNMEDL 286
Query: 121 KDVTSNVHYENFRCRKLAGLG-TDGKPRLLNKNPLAQMEEEKREHEAKMKKMEVDMEQVF 179
++ T HYE +R KL +G D P + E ++ E +++K E +M Q+F
Sbjct: 287 REQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMF 346
Query: 180 EMKVKEKKQKLKDSEID-------MKKSLEAQIKELEEKRRGLELEISQWEQSNGVSMDE 232
+VKEK+ +LK++E + +KK + + K+LE+K++ L+ E++ ++Q + +
Sbjct: 347 VQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRK-TAAEL 405
Query: 233 LRRRSLERDSSLDGKEKKVKK 253
L+ + + S K K KK
Sbjct: 406 LQSQGSQAGGSQTLKRDKEKK 426
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 212 bits (541), Expect = 5e-67
Identities = 156/254 (61%), Positives = 197/254 (77%), Gaps = 14/254 (5%)
Query: 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFN 60
M+RLH+KVNIIP+IAKADT+TPEEC FKKQI+ EI +HKI+IY+FP + +++ +K
Sbjct: 161 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFP--ETDDEEENKLV 218
Query: 61 KNLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDL 120
K ++DR+P AVVGSNT++E++GK+VRGR+YPWG+AEVEN EHCDF LRNMLIRT++QDL
Sbjct: 219 KKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDL 278
Query: 121 KDVTSNVHYENFRCRKLAGLGTDG-----KPRLLNKNPLAQMEEEKREHEAKMKKMEVDM 175
KDVT+NVHYEN+R RKLA + +G L K+PLAQMEEE+REH AKMKKME++M
Sbjct: 279 KDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEM 338
Query: 176 EQVFEMKVKEKKQKLKDSEID-------MKKSLEAQIKELEEKRRGLELEISQWEQSNGV 228
EQVFEMKVKEK QKLKDSE + MKK+LEAQ KELEEKRR E E + WE +
Sbjct: 339 EQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRI 398
Query: 229 SMDELRRRSLERDS 242
+ R+LE++
Sbjct: 399 LEQQNSSRTLEKNK 412
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 173 bits (440), Expect = 1e-52
Identities = 86/190 (45%), Positives = 122/190 (64%), Gaps = 3/190 (1%)
Query: 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKF- 59
M+ +H+KVNI+PVIAKADT+T +E KK+IL EI +H I+IY P S ED+ K
Sbjct: 168 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQ 227
Query: 60 NKNLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQD 119
+ L+ +PF+VVGSN ++E GKKVRGR YPWG+ EVEN EH DF+ LR MLI T++QD
Sbjct: 228 TRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLI-THMQD 286
Query: 120 LKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKN-PLAQMEEEKREHEAKMKKMEVDMEQV 178
L++VT ++HYENFR +L G + +NK+ L + E E R + + +M+ M+
Sbjct: 287 LQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQ 346
Query: 179 FEMKVKEKKQ 188
+ +
Sbjct: 347 MQGGDGDGGA 356
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 165 bits (418), Expect = 2e-50
Identities = 95/139 (68%), Positives = 119/139 (85%), Gaps = 2/139 (1%)
Query: 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFN 60
M+RLH+KVNIIP+IAKADT+TPEEC FKKQI+ EI +HKI+IY+FP E++ K
Sbjct: 138 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEEN--KLV 195
Query: 61 KNLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDL 120
K ++DR+P AVVGSNT++E++GK+VRGR+YPWG+AEVEN EHCDF LRNMLIRT++QDL
Sbjct: 196 KKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDL 255
Query: 121 KDVTSNVHYENFRCRKLAG 139
KDVT+NVHYEN+R RKLA
Sbjct: 256 KDVTNNVHYENYRSRKLAA 274
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 151 bits (381), Expect = 2e-44
Identities = 79/153 (51%), Positives = 108/153 (70%), Gaps = 2/153 (1%)
Query: 1 MQRLHDKVNIIPVIAKADTMTPEECALFKKQILSEIAQHKIEIYQFPPGGSSEDD-TSKF 59
M+ +H+KVNI+PVIAKADT+T +E KK+IL EI +H I+IY P S ED+ +
Sbjct: 149 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQ 208
Query: 60 NKNLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQD 119
+ L+ +PF+VVGSN ++E GKKVRGR YPWG+ EVEN EH DF+ LR MLI T++QD
Sbjct: 209 TRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLI-THMQD 267
Query: 120 LKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKN 152
L++VT ++HYENFR +L G + +NK+
Sbjct: 268 LQEVTQDLHYENFRSERLKRGGRKVENEDMNKD 300
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 1e-05
Identities = 34/240 (14%), Positives = 76/240 (31%), Gaps = 66/240 (27%)
Query: 44 YQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTVVEIDGKKVRGRKYPWG---IAEVENL 100
YQ P +S D S N++ R+ +++ + ++ + Y + V+N
Sbjct: 207 YQIDPNWTSRSDHSS---NIKLRI-------HSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 101 EHCDFIALR-NMLIRTNLQDLKDVTSNVHYENFR----------------CRKLAGLGTD 143
+ + L +L+ T + + D S + K
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 144 GKPRLLNK-NPL--AQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKS 200
PR + NP + + E R+ + ++ +K + ++ S
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDG--------LATWDNWKHVNCDKLTTI------IESS 362
Query: 201 LEAQIKELEEKRRGLELEI--------SQ-----W----EQSNGVSMDELRRRSL-ERDS 242
L + E ++ L + + W + V +++L + SL E+
Sbjct: 363 LNVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Score = 42.5 bits (99), Expect = 8e-05
Identities = 33/242 (13%), Positives = 68/242 (28%), Gaps = 53/242 (21%)
Query: 30 KQIL-SEIAQ-HKIEIYQFPPGG---------SSEDDTSKFNKNLRDRVPFAVVGSNTVV 78
K + ++ +K++ +S + + + L + N
Sbjct: 163 KTWVALDVCLSYKVQ--CKMDFKIFWLNLKNCNSPETVLEMLQKL-----LYQIDPNWTS 215
Query: 79 EIDGKKVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQD----LKDVTSNVHYE--NF 132
D I ++ LR +L ++ L +V + + N
Sbjct: 216 RSD----HSSNIKLRIHSIQA-------ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 133 RCRKLAGLGTDGKPRLLNKNPLAQMEEEKREHEAKMKKMEV----DMEQVFEMKVKEKKQ 188
C+ L L T R K + H + +++ + + + Q
Sbjct: 265 SCKIL--LTT----R--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 189 KLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWEQSNGVSMDELRRRSLERDSSLDGKE 248
L + + I E R GL W+ N + + SL L+ E
Sbjct: 317 DLPREVLTTNPRRLSIIAES--IRDGLAT-WDNWKHVNCDKLTTIIESSLN---VLEPAE 370
Query: 249 KK 250
+
Sbjct: 371 YR 372
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 44.8 bits (106), Expect = 2e-05
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 154 LAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRR 213
+++ EK + K+KKME D+ + + K K++ E L + E EEK +
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE--RVSDLTTNLAEEEEKAK 1028
Query: 214 GLELEISQWEQSNGVSMDELRRRSLERDSSLDGKEKKVKK 253
L ++ E + EL R + + S EK +K
Sbjct: 1029 NLTKLKNKHES----MISELEVRLKKEEKSRQELEKIKRK 1064
Score = 43.3 bits (102), Expect = 5e-05
Identities = 20/100 (20%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 154 LAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRR 213
+ + EE ++ +A+ KKM+ M + E +++E++ + +++ K + + +IK++E+
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDL-EEQLEEEEAARQKLQLE-KVTADGKIKKMEDDIL 993
Query: 214 GLELEISQWEQSNGVSMDELRRRSLERDSSLDGKEKKVKK 253
+E + ++ + L R + ++L +E+K K
Sbjct: 994 IMEDQNNKLTKER----KLLEERVSDLTTNLAEEEEKAKN 1029
Score = 37.9 bits (88), Expect = 0.003
Identities = 17/103 (16%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 154 LAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRR 213
+A+++ + E +A++ K E +++ + E + K++ + + LE+ I +L+E
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAA--LARLEDETSQKNNALKKIRELESHISDLQEDLE 1133
Query: 214 GLELEISQWEQSNGVSMDELR--RRSLERDSSLDGKEKKVKKK 254
+ ++ E+ +EL + LE +++++
Sbjct: 1134 SEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
Score = 34.8 bits (80), Expect = 0.024
Identities = 19/105 (18%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 154 LAQMEEEKREHEAKMKKMEVDMEQVFEM--KVKEKKQKLKDSEIDMKKSLEAQIK---EL 208
++ +E++ E ++ + ++ + E + + K K + +++ L+ + K EL
Sbjct: 999 NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1058
Query: 209 EEKRRGLELEISQWEQSNGVSMDELRRRSLERDSSLDGKEKKVKK 253
E+ +R LE + EL+ + E + L KE++++
Sbjct: 1059 EKIKRKLE----GESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099
Score = 34.8 bits (80), Expect = 0.028
Identities = 18/106 (16%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 155 AQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSE------IDMKKSLEAQIKEL 208
Q E E +M+ +Q E + E + ++++ E KK ++ Q+ +L
Sbjct: 901 LQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL 960
Query: 209 EEKRRGLELEISQWEQSNGVSMDELRRRSLERDSSLDGKEKKVKKK 254
EE+ E + + + ++++ + D K K++
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER 1006
Score = 31.3 bits (71), Expect = 0.30
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 150 NKNPLAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELE 209
+ ++ RE E+ + ++ D+E K + K + + D+ + LEA ELE
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLES-----EKAARNKAEKQKRDLSEELEALKTELE 1161
Query: 210 EKRRGLELEISQWEQ 224
+ +
Sbjct: 1162 DTLDTTATQQELRGS 1176
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 43.9 bits (104), Expect = 3e-05
Identities = 9/99 (9%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 154 LAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRR 213
+ +E K++ + E K ++ + ++ K L ++ + + +++
Sbjct: 951 MNNLEITYSTETEKLRSDVERLRMSEEEA-KNATNRVLSLQEEIAK-LRKELHQTQTEKK 1008
Query: 214 GLELEISQWEQSNGVSMDELRRRSLERDSSLDGKEKKVK 252
+E +++ + EL+ ++ + + +++
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047
Score = 42.4 bits (100), Expect = 1e-04
Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 154 LAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRR 213
+A+ E +K + EA+ + + E K+ + ++K+ + + K L EK
Sbjct: 901 MAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDE--------QNKEYKSLLEKMN 952
Query: 214 GLELEISQWEQSNGVSMDELRRRSLER---DSSLDGKEKKVKK 253
LE+ S + ++ LR E + + ++++ K
Sbjct: 953 NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK 995
Score = 34.7 bits (80), Expect = 0.027
Identities = 12/101 (11%), Positives = 38/101 (37%), Gaps = 2/101 (1%)
Query: 154 LAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRR 213
+ E+ R +++ E + + +V ++++ ++ + + + K +EE
Sbjct: 958 YSTETEKLRSDVERLRMSE-EEAKNATNRVLSLQEEIAKLRKELHQ-TQTEKKTIEEWAD 1015
Query: 214 GLELEISQWEQSNGVSMDELRRRSLERDSSLDGKEKKVKKK 254
+ E Q L+ E + + + K++ +
Sbjct: 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056
Score = 34.3 bits (79), Expect = 0.040
Identities = 10/66 (15%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 156 QMEEEKREHEAKMKKMEVDMEQV---FEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKR 212
+EE +++ + +++ ++++ + + +E +++ D ++ +++E ++ E E K+
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVE-ETKQ 1067
Query: 213 RGLELE 218
L+L
Sbjct: 1068 LELDLN 1073
Score = 32.0 bits (73), Expect = 0.19
Identities = 14/95 (14%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 151 KNPLAQMEEEKREHEAKMKKMEVDMEQVFE--MKVKEKKQKLKDSEIDMKKSLEAQIKEL 208
N + ++EE + ++ + + + + + E K K + ++L + L+ + +EL
Sbjct: 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042
Query: 209 EEKRRGLELEISQWEQSNGVSMDELRRRSLERDSS 243
+ EI++ + V + L +
Sbjct: 1043 NRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077
Score = 28.2 bits (63), Expect = 3.5
Identities = 11/100 (11%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 155 AQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRG 214
+ +K + + ++ + E+ K ++ ++ G
Sbjct: 866 KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIG 925
Query: 215 LELEISQWEQSNGVSMDELRRRSLERDSSLDGKEKKVKKK 254
LE +I Q ++ +DE + ++ E +
Sbjct: 926 LENKIMQLQR----KIDEQNKEYKSLLEKMNNLEITYSTE 961
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.8 bits (87), Expect = 0.001
Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 154 LAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRR 213
+AQ + +E E+ K E EQ ++ + K+ + E E K+LEE +
Sbjct: 74 IAQADRLTQEPESIRKWRE---EQRKRLQELDAASKVMEQEW-----REKAKKDLEEWNQ 125
Query: 214 GLELEISQWEQSNGVSMDELRRRSLERDSSL 244
++ + + +N ++ + + D+ +
Sbjct: 126 RQSEQVEKNKINNRIADKAFYQ---QPDADI 153
Score = 28.6 bits (63), Expect = 1.6
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 183 VKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWEQSNGVSMDELRRRSLERDS 242
+ + + ++ E ++K E Q K L+E ++ +W + ++E +R E+
Sbjct: 74 IAQADRLTQEPES-IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ-- 130
Query: 243 SLDGKEKKVKK 253
EK
Sbjct: 131 ----VEKNKIN 137
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 35.3 bits (82), Expect = 0.017
Identities = 13/62 (20%), Positives = 31/62 (50%)
Query: 159 EEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELE 218
+E E K+ ++ + + + + EK L+D+E +++ +E K +EK+ E
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Query: 219 IS 220
++
Sbjct: 454 VT 455
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 34.5 bits (78), Expect = 0.034
Identities = 14/76 (18%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 155 AQMEEEKREHEAKMK----KMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEE 210
ME+++R ++ +K KME D Q+ + + + KL++ E +K+ + + + ++
Sbjct: 515 QMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKN 574
Query: 211 KRRGLELEISQWEQSN 226
+ + L+ ++ + +
Sbjct: 575 EIQDLQTKMRRRKACT 590
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 30.4 bits (69), Expect = 0.56
Identities = 5/68 (7%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 150 NKNPLAQMEEEKREHEAKMKKMEVDMEQVFEMK-VKEKKQKLKDSEIDM---KKSLEAQI 205
+ ++ E + +++ ++ + + + + + + + +K + Q
Sbjct: 199 SIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQF 258
Query: 206 KELEEKRR 213
++++KR+
Sbjct: 259 LKIKKKRK 266
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain,
M20 peptidase family, evolution, residue, dimerization
domain; 2.75A {Bacillus stearothermophilus}
Length = 408
Score = 29.8 bits (68), Expect = 0.76
Identities = 5/45 (11%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 196 DMKKSLEAQIKELEEKRRGLELEISQWEQSNGVSMDELRRRSLER 240
+ K++ + + + + R + + + ++ V + +R+ E
Sbjct: 295 QVWKAIAVRAETIAK-ERNVRVTTERLQEMPPVLCSDEVKRAAEA 338
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.99
Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 33/89 (37%)
Query: 1 MQRLHDKVNIIPVIAKADTMTP---EECALFKKQILSEIAQHKIEIYQFPPGGSSEDDTS 57
++ L +I I P E FK A H ++ F PGG+S
Sbjct: 468 LRVLSG--SISERIVDCIIRLPVKWETTTQFK-------ATHILD---FGPGGASG---- 511
Query: 58 KFNKNLRDRVPFAVVGSNTVVEIDGKKVR 86
+G T DG VR
Sbjct: 512 --------------LGVLTHRNKDGTGVR 526
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 29.8 bits (66), Expect = 1.1
Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 156 QMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGL 215
K E E++ + ++ E + + ++E ++++ + + EL R L
Sbjct: 718 STGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQL 777
Query: 216 ELEISQWEQSNGVSMDELRR------RSLERDSSLDGKEKKVK 252
ELE+S+ +Q V + + RD ++ G E +VK
Sbjct: 778 ELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVK 820
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin
utilization, structural genomics, PSI, Pro structure
initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP:
c.56.5.4 d.58.19.1 PDB: 2imo_A
Length = 423
Score = 29.4 bits (67), Expect = 1.1
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 196 DMKKSLEAQIKELEEKRRGLELEISQWEQSNGVSMDELRRRSLER 240
D + LE ++ + + + ++I W V M++ +L
Sbjct: 299 DFTQQLENDMRAICD-EMDIGIDIDLWMDEEPVPMNKELVATLTE 342
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae}
Length = 287
Score = 29.0 bits (64), Expect = 1.6
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 154 LAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELE---- 209
+ +++ + + ++ + + E+K + D+ L +E
Sbjct: 128 IEELKSDLKSSTEYYNTLDQQVVR--ELKESVENNTSWRESKDLHSKLSKNAASIEHYSK 185
Query: 210 --EKRRGLELEISQWEQ 224
E LE QW+Q
Sbjct: 186 NNENSSHLEEARRQWDQ 202
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 327
Score = 28.8 bits (65), Expect = 1.7
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 161 KREHEAKMKKMEVDMEQ---VFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLEL 217
H + +D E+ K++ K+ +++D L+ +I LE
Sbjct: 3 HHHHHLVPRGSMLDFEKPLFEIRNKIESLKESQDKNDVD----LQEEIDMLEASLERETK 58
Query: 218 EI 219
+I
Sbjct: 59 KI 60
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 28.8 bits (65), Expect = 2.0
Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 26/121 (21%)
Query: 112 LIRTNLQDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKNPLAQMEEEKREHEAKMKKM 171
+ +D R L + + + L + +E R+ +++ +
Sbjct: 45 SLCAYPEDAA-------------RALDLRKGELRSKDLPG--IISTWQELRQLREQIRSL 89
Query: 172 EVDMEQVFEMKVKEKKQKLKDSEIDMK----------KSLEAQIKELEEKRRGLELEISQ 221
E + E V E V+ +S++ + + Q+ L K LE +
Sbjct: 90 EEEKEAVTE-AVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148
Query: 222 W 222
Sbjct: 149 R 149
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein,
DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase;
HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A*
2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Length = 474
Score = 28.8 bits (65), Expect = 2.1
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 196 DMKKSLEAQIKEL--EEKRRGLELEISQWEQSNGVSMDELRRRSLER 240
M K A+ L L E + S V+ E+ + R
Sbjct: 330 TMLKEAAAEFDRLIKINDGGALSYESETLQVSPAVNFHEVCIECVSR 376
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 28.5 bits (64), Expect = 2.2
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 15/162 (9%)
Query: 65 DRVPFAVVGSNTVVEIDGK----KVRGRKYPWGIAEVENLEHCDFIALRNMLIRTNLQDL 120
D+V AV+ + V+ K +VR P ++ +L+ + D
Sbjct: 56 DKVEPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIA-------LLLGESTTDW 108
Query: 121 KDVTSNVHYENFRCRKLAGLGTDGKPRLLNKNPLAQMEEEKREHEAKMKKMEVDMEQVFE 180
K + S + ENF + + + K M +E + V
Sbjct: 109 KQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKW 168
Query: 181 MKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEISQW 222
+ + ++ L ++++LE+ + + ++
Sbjct: 169 AIAQLNYADMLK---RVEP-LRNELQKLEDDAKDNQQKLEAL 206
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 28.0 bits (62), Expect = 2.6
Identities = 9/105 (8%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 154 LAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRR 213
++ +E + H+ ++E + E + L + + + +++++ +R+
Sbjct: 36 VSSVELLMKYHQGINAEIETRSKNFSA--CLELGESLLQRQHQASEEIREKLQQVMSRRK 93
Query: 214 GLELEISQWEQSNGVSMD--ELRRRSLERDSSLDGKEKKVKKKGL 256
+ + + + ++ + R + ++ L +E +
Sbjct: 94 EMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGDF 138
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 27.9 bits (63), Expect = 3.3
Identities = 20/113 (17%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 112 LIRTNLQDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKNPLAQMEEEKREHEAKMKKM 171
LIR +K +LA + + + + ++++ +RE +++ +
Sbjct: 6 LIREKPDYVK-------------ERLATRDKELVSLV---DKVLELDKRRREIIKRLEAL 49
Query: 172 EVDMEQVFEMKVKEKKQKLKDSEIDMK--KSLEAQIKELEEKRRGLELEISQW 222
+ ++ + ++ + K++ KD+ K L+ +I LEE+ R +E E+
Sbjct: 50 RSERNKLSK-EIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein,
developmental protein, structural protei
phosphorylation, transport, microtubule; 2.10A {Homo
sapiens}
Length = 111
Score = 26.8 bits (59), Expect = 3.5
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 160 EKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRGLELEI 219
E+R + + + E +KEK + LE + + + L +
Sbjct: 2 EQRNRDLQADNQRLKYEV---EALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV 58
Query: 220 SQWEQSNGVSMDELRRRSLERDSSLDGKEKKVKK 253
+ EQ+N D+L R SL+ E+++ +
Sbjct: 59 RELEQAN----DDLERAKRATIVSLEDFEQRLNQ 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.6
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 9/30 (30%)
Query: 186 KKQKLKDSEIDMKK---------SLEAQIK 206
+KQ LK + +K +++A ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>2rm8_A Sensory rhodopsin II transducer; protein, chemotaxis, chromophore,
membrane, methylation, photoreceptor protein, receptor;
NMR {Natronomonas pharaonis}
Length = 68
Score = 26.0 bits (57), Expect = 3.6
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 189 KLKDSEIDMKKSLEAQIKELEEKRRGLELEISQWEQSN 226
L + +M++S+ +++ + R E + E+ N
Sbjct: 20 DLYAAFDEMRQSVRTSLEDAKNAREDAEQAQKRAEEIN 57
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 27.6 bits (62), Expect = 4.5
Identities = 8/43 (18%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 182 KVKEKKQKLKDSE--IDMKKSLEAQIKELEEKRRGLELEISQW 222
++ ++ + +D++ I K+ L + KE+ EK + +
Sbjct: 62 EIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 27.7 bits (62), Expect = 4.7
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 149 LNKNPLAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQ 204
LN N + ++ E K A+ + ++ + + ++L+ E D+
Sbjct: 956 LNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIE-DLHHHHHHH 1010
Score = 26.9 bits (60), Expect = 8.8
Identities = 4/79 (5%), Positives = 24/79 (30%), Gaps = 9/79 (11%)
Query: 154 LAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQK--------LKDSEIDMKKSLEAQI 205
+ + + + + + + + ++ V E ++ + ++ + +
Sbjct: 932 DGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVK-SSAETYKNTL 990
Query: 206 KELEEKRRGLELEISQWEQ 224
E+ + +E
Sbjct: 991 LAELERLQKIEDLHHHHHH 1009
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 27.2 bits (60), Expect = 4.9
Identities = 11/103 (10%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 154 LAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRR 213
+ E H+ +++ ++ Q+L ++ ++ L+++R
Sbjct: 45 VTGAEALLERHQEHRTEIDARAGTFQA--FEQFGQQLLAHGHYASPEIKQKLDILDQERA 102
Query: 214 GLELEISQWEQSNGVSMD--ELRRRSLERDSSLDGKEKKVKKK 254
LE Q ++ R + ++ + +E + +
Sbjct: 103 DLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAAREAFLNTE 145
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 27.4 bits (61), Expect = 5.2
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 150 NKNPLAQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELE 209
K P+ E + + + ++K+ + + ++ +A+ +LE
Sbjct: 70 KKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEA----ILKCDAERIKLE 125
Query: 210 EKRRGLELEI 219
+R EI
Sbjct: 126 AERFENLREI 135
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 27.6 bits (61), Expect = 5.8
Identities = 10/55 (18%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 157 MEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEK 211
+ E++ + E + + + ++ K+++ + ++KD ++ SL + +EL+ K
Sbjct: 1908 INEKRDQLEEEQLHLNIGLK-----KLRDTEAQVKD----LQVSLAQKNRELDVK 1953
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 26.4 bits (58), Expect = 6.4
Identities = 12/70 (17%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 155 AQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRG 214
+E E + +++++ME D++ + K + K ++K + AQ + +K +
Sbjct: 26 NTLENEFKGRASELQRMETDLQAKMK---KLQSMKAGSDRTKLEKDVMAQRQTFAQKAQA 82
Query: 215 LELEISQWEQ 224
E + ++
Sbjct: 83 FEQDRARRSN 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 27.1 bits (60), Expect = 7.1
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 155 AQMEEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEEKRRG 214
++E +R ++K+ + +V E+ K L S K+ K+ + +
Sbjct: 1864 QDLQENQRFVNVGLEKLNESVLKVNELN-KTLSISLVKSLTFEKERWLNTTKQFSKTSQE 1922
Query: 215 LELEI 219
L
Sbjct: 1923 LIGNC 1927
>2rd1_A Putative outer membrane lipoprotein; X-RAY, NESG, Q7CQI7, STR87A,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Salmonella typhimurium LT2} SCOP:
b.38.1.6
Length = 62
Score = 24.8 bits (54), Expect = 7.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 143 DGKPRLLNKNPLAQMEEEKREH 164
+G R +N N +AQ+ + EH
Sbjct: 36 EGNQREINSNDVAQLIKADLEH 57
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 26.4 bits (59), Expect = 9.9
Identities = 17/113 (15%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 112 LIRTNLQDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKNPLAQMEEEKREHEAKMKKM 171
LIR N + +K L G K + +++ + +++ E R ++ ++
Sbjct: 6 LIRENPELVK-------------NDLIKRGELEKVKWVDE--ILKLDTEWRTKLKEINRL 50
Query: 172 EVDMEQVFEMKVKEKKQKLKDSE--IDMKKSLEAQIKELEEKRRGLELEISQW 222
+ ++ ++ ++++K + + + + + +I ELE + L+ +I +
Sbjct: 51 RHERNKIAV-EIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.366
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,931,879
Number of extensions: 237769
Number of successful extensions: 891
Number of sequences better than 10.0: 1
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 213
Length of query: 257
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,133,061
Effective search space: 681955065
Effective search space used: 681955065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.3 bits)