RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5592
         (257 letters)



>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 316

 Score = 26.6 bits (58), Expect = 3.1
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 28  FKKQILSEIAQHKIEIYQFPPGGSSEDDTSKFNKNLRDRVPFAVVGSNTVVEI 80
           FK+ +  ++    IE    PP    + DTS+F+K   + + + V G +   ++
Sbjct: 260 FKEVVWEKLLSRNIETPYEPPIQQGQGDTSQFDKYPEEDINYGVQGEDPYADL 312


>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast
           (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
          Length = 102

 Score = 24.6 bits (54), Expect = 5.4
 Identities = 11/56 (19%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 158 EEEKREHEAKMKKMEVDMEQVFEMKVKEKKQKLKDSE---IDMKKSLEAQIKELEE 210
           ++E ++ EA + K++ D + V    +K++++ L D++     + + +    ++LE+
Sbjct: 21  QQELKDQEAHVAKLKED-KSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQ 75


>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
           {Rhodospirillum rubrum [TaxId: 1085]}
          Length = 610

 Score = 26.0 bits (57), Expect = 5.6
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 194 EIDMKKSLEAQIKELEEKRRGL 215
           + D K + +     ++E+R GL
Sbjct: 589 DTDPKSAGDKLYAAIQERRAGL 610


>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
           protein 1 (GBP1), C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 300

 Score = 25.5 bits (55), Expect = 7.8
 Identities = 14/69 (20%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 155 AQMEEEKREHEAKMK----KMEVDMEQVFEMKVKEKKQKLKDSEIDMKKSLEAQIKELEE 210
             ME+++R ++  +K    KME D  Q+ + + +    KL++ E  +K+  + + + ++ 
Sbjct: 232 QMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKN 291

Query: 211 KRRGLELEI 219
           + + L+ ++
Sbjct: 292 EIQDLQTKM 300


>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
           dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
           subunit {Moorella thermoacetica [TaxId: 1525]}
          Length = 673

 Score = 25.2 bits (55), Expect = 9.1
 Identities = 5/25 (20%), Positives = 11/25 (44%)

Query: 194 EIDMKKSLEAQIKELEEKRRGLELE 218
           E+D + +    +  LE +   L + 
Sbjct: 634 EMDPQVAARKILDALEYRTWKLGVH 658


>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
           UGT71G1 {Medicago truncatula [TaxId: 3880]}
          Length = 461

 Score = 25.1 bits (53), Expect = 9.4
 Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 209 EEKRRGLELEISQWEQSNGVSMDELR---RRSLERDSSLDGKEKKVKKK 254
           +E   GL L +   + S+ V+ +E+    +  +++DS +  K +++K+ 
Sbjct: 389 KEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEM 437


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 955,046
Number of extensions: 46429
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 55
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.1 bits)