BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5595
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 256 bits (654), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 117/191 (61%), Positives = 151/191 (79%), Gaps = 9/191 (4%)
Query: 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAI 105
+G AID +N++ RGQK+P+FS +GLPH E+AAQI RQA ++ DS D+FA+
Sbjct: 136 QTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVL---------DSSDDFAV 186
Query: 106 VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQC 165
VFAA+G+ E A FF +DF + G+++ +F+NLANDP IERI TPR+ALT AE+LAY+
Sbjct: 187 VFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTAAEYLAYEK 246
Query: 166 EKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSIT 225
HVLVI+TDM++YAEALRE+SAAR EVPGRRG+PGY+YTNLAT++ERAGR+ G GS+T
Sbjct: 247 GMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGLKGSVT 306
Query: 226 QIPILTMPNDD 236
QIPILTMP DD
Sbjct: 307 QIPILTMPEDD 317
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 31
+ V+GE AL+ D +Y +F +FE +V+Q
Sbjct: 392 LAVVLGESALSDIDKIYAKFAERFENEYVNQ 422
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 254 bits (648), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 120/191 (62%), Positives = 152/191 (79%), Gaps = 2/191 (1%)
Query: 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAI 105
+G IDVMN++ RGQK+PIFS +GLP NEIAAQI RQA + P S + E+ FA+
Sbjct: 132 QTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATV--RPDLSGEGEKEEPFAV 189
Query: 106 VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQC 165
VFAAMG+ +F Q+FE G++ LFLN A+DPTIERI+TPR+ALT AE+LA++
Sbjct: 190 VFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEH 249
Query: 166 EKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSIT 225
+ HVLVILTDM++Y+EALRE+ AAREE+PGRRG+PGYMYT+LATIYERAG VEG+ GS+T
Sbjct: 250 DYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVT 309
Query: 226 QIPILTMPNDD 236
QIPIL+MP+DD
Sbjct: 310 QIPILSMPDDD 320
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 31
+ A++GE+ALT +D YL+F FE+ F++Q
Sbjct: 395 LVAIIGEDALTENDRRYLQFADAFERFFINQ 425
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 120/191 (62%), Positives = 151/191 (79%), Gaps = 2/191 (1%)
Query: 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAI 105
+G IDVMN++ RGQK+PIFS +GLP NEIAAQI RQA + P S + E+ FA+
Sbjct: 132 QTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATV--RPDLSGEGEKEEPFAV 189
Query: 106 VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQC 165
VFAAMG+ +F Q+FE G++ LFLN A+DPTIERI+TPR+ALT AE+LA++
Sbjct: 190 VFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEH 249
Query: 166 EKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSIT 225
+ HVLVILTDM++Y EALRE+ AAREE+PGRRG+PGYMYT+LATIYERAG VEG+ GS+T
Sbjct: 250 DYHVLVILTDMTNYCEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVT 309
Query: 226 QIPILTMPNDD 236
QIPIL+MP+DD
Sbjct: 310 QIPILSMPDDD 320
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 31
+ A++GE+ALT +D YL+F FE+ F++Q
Sbjct: 395 LVAIIGEDALTENDRRYLQFADAFERFFINQ 425
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 252 bits (644), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 122/199 (61%), Positives = 154/199 (77%), Gaps = 11/199 (5%)
Query: 39 PRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD 98
P+D I +G ID N++ RGQK+PIFSA+GLPHNEIA QI RQA +PG
Sbjct: 132 PKDFI--QTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQA---SVPG------ 180
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
SE FA+VFAAMG+ E A++F DFE+ G++E +FLNLA+DP +ERI+TPR+ALT A
Sbjct: 181 SESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAA 240
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+LAY+ HVLVILTD+++YAEALR++ AAR EVPGRRG+PGYMYT+LAT+YERAG V+
Sbjct: 241 EYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVK 300
Query: 219 GRNGSITQIPILTMPNDDF 237
G GS+TQIPIL+MP DD
Sbjct: 301 GAKGSVTQIPILSMPGDDI 319
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLI 43
+ A+VG+EAL+ D +LEF FE FV Q + T D +
Sbjct: 393 LVAIVGKEALSERDTKFLEFADLFEDKFVRQGWNENRTIEDTL 435
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 252 bits (643), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 122/199 (61%), Positives = 154/199 (77%), Gaps = 11/199 (5%)
Query: 39 PRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD 98
P+D I +G ID N++ RGQK+PIFSA+GLPHNEIA QI RQA +PG
Sbjct: 132 PKDFI--QTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQA---SVPG------ 180
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
SE FA+VFAAMG+ E A++F DFE+ G++E +FLNLA+DP +ERI+TPR+ALT A
Sbjct: 181 SESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAA 240
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+LAY+ HVLVILTD+++YAEALR++ AAR EVPGRRG+PGYMYT+LAT+YERAG V+
Sbjct: 241 EYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVK 300
Query: 219 GRNGSITQIPILTMPNDDF 237
G GS+TQIPIL+MP DD
Sbjct: 301 GAKGSVTQIPILSMPGDDI 319
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 31
+ A+VG+EAL+ D +LEF FE FV Q
Sbjct: 393 LVAIVGKEALSERDTKFLEFADLFEDKFVRQ 423
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 250 bits (638), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 121/199 (60%), Positives = 153/199 (76%), Gaps = 11/199 (5%)
Query: 39 PRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD 98
P+D I +G ID N++ RGQK+PIFSA+GLPH EIA QI RQA +PG
Sbjct: 123 PKDFI--QTGISTIDGTNTLVRGQKLPIFSASGLPHTEIALQIARQA---SVPG------ 171
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
SE FA+VFAAMG+ E A++F DFE+ G++E +FLNLA+DP +ERI+TPR+ALT A
Sbjct: 172 SESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAA 231
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+LAY+ HVLVILTD+++YAEALR++ AAR EVPGRRG+PGYMYT+LAT+YERAG V+
Sbjct: 232 EYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVK 291
Query: 219 GRNGSITQIPILTMPNDDF 237
G GS+TQIPIL+MP DD
Sbjct: 292 GAKGSVTQIPILSMPGDDI 310
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 31
+ A+VG+EAL+ D +LEF FE FV Q
Sbjct: 384 LVAIVGKEALSERDTKFLEFADLFEDKFVRQ 414
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 249 bits (636), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/199 (60%), Positives = 153/199 (76%), Gaps = 11/199 (5%)
Query: 39 PRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD 98
P+D I +G ID N++ RGQK+PIFSA+GLPH EIA QI RQA +PG
Sbjct: 123 PKDFI--QTGISTIDGTNTLVRGQKLPIFSASGLPHAEIALQIARQA---SVPG------ 171
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
SE FA+VFAAMG+ E A++F DFE+ G++E +FLNLA+DP +ERI+TPR+ALT A
Sbjct: 172 SESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAA 231
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+LAY+ HVLVILTD+++YAEALR++ AAR EVPGRRG+PGYMYT+LAT+YERAG V+
Sbjct: 232 EYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVK 291
Query: 219 GRNGSITQIPILTMPNDDF 237
G GS+TQIPIL+MP DD
Sbjct: 292 GAKGSVTQIPILSMPGDDI 310
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 31
+ A+VG+EAL+ D +LEF FE FV Q
Sbjct: 384 LVAIVGKEALSERDTKFLEFADLFEDKFVRQ 414
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 248 bits (633), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/199 (60%), Positives = 153/199 (76%), Gaps = 11/199 (5%)
Query: 39 PRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD 98
P+D I +G ID N++ RGQK+PIFSA+GLP NEIA QI RQA +PG
Sbjct: 123 PKDFI--QTGISTIDGTNTLVRGQKLPIFSASGLPANEIALQIARQA---SVPG------ 171
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
SE FA+VFAAMG+ E A++F DFE+ G++E +FLNLA+DP +ERI+TPR+ALT A
Sbjct: 172 SESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAA 231
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+LAY+ HVLVILTD+++YAEALR++ AAR EVPGRRG+PGYMYT+LAT+YERAG V+
Sbjct: 232 EYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVK 291
Query: 219 GRNGSITQIPILTMPNDDF 237
G GS+TQIPIL+MP DD
Sbjct: 292 GAKGSVTQIPILSMPGDDI 310
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 31
+ A+VG+EAL+ D +LEF FE FV Q
Sbjct: 384 LVAIVGKEALSERDTKFLEFADLFEDKFVRQ 414
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 229 bits (584), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/191 (60%), Positives = 145/191 (75%), Gaps = 9/191 (4%)
Query: 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAI 105
+G AID +N++ RGQK+P+FS +GLPH E+AAQI RQA ++ DS D+FA+
Sbjct: 136 QTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVL---------DSSDDFAV 186
Query: 106 VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQC 165
VFAA+G+ E A FF +DF + G+++ F NLANDP IERI TPR ALT AE+LAY+
Sbjct: 187 VFAAIGITFEEAEFFXEDFRQTGAIDRSVXFXNLANDPAIERIATPRXALTAAEYLAYEK 246
Query: 166 EKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSIT 225
HVLVI TD ++YAEALRE+SAAR EVPGRRG+PGY+YTNLAT++ERAGR+ G GS+T
Sbjct: 247 GXHVLVIXTDXTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGLKGSVT 306
Query: 226 QIPILTMPNDD 236
QIPILT P DD
Sbjct: 307 QIPILTXPEDD 317
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 31
+ V+GE AL+ D +Y +F +FE +V+Q
Sbjct: 392 LAVVLGESALSDIDKIYAKFAERFENEYVNQ 422
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 16/192 (8%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G AID M + RGQ+ I RQ G + ++L+ N V
Sbjct: 149 TGLIAIDAMIPVGRGQRELIIGD-------------RQTGKTAVATDTILNQQGQNVICV 195
Query: 107 FAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 166
+ A+G + +F+E G+ME + A+ P + + P AE+ Y+ E
Sbjct: 196 YVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYR-E 254
Query: 167 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGR--NGSI 224
+H L+I D+S A+A R++S PGR +PG ++ + + ERA ++ GS+
Sbjct: 255 RHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSM 314
Query: 225 TQIPILTMPNDD 236
T +PI+ D
Sbjct: 315 TALPIVETQAGD 326
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
ME L N +N P R + +T AE+ ++ + + ++ D +S +AEALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEY--FRDMGYDVALMADSTSRWAEALREISG 345
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P DF
Sbjct: 346 RLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPN 287
++S EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPG 396
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
ME L N +N P R + +T AE+ ++ + + ++ D +S +AEALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEY--FRDMGYDVALMADSTSRWAEALREISG 345
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P DF
Sbjct: 346 RLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPN 287
++S EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPG 396
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
ME L N +N P R + +T AE+ ++ + + ++ D +S +AEALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEY--FRDMGYDVALMADSTSRWAEALREISG 345
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P DF
Sbjct: 346 RLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPN 287
++S EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPG 396
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
ME L N +N P R + +T AE+ ++ + + ++ D +S +AEALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEY--FRDMGYDVALMADSTSRWAEALREISG 345
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P DF
Sbjct: 346 RLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPN 287
++S EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPG 396
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
ME L N +N P R + +T AE+ ++ + + ++ D +S +AEALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEY--FRDMGYDVALMADSTSRWAEALREISG 345
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P DF
Sbjct: 346 RLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPN 287
++S EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPG 396
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
ME L N +N P R + +T AE+ ++ + + ++ D +S +AEALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEY--FRDMGYDVALMADSTSRWAEALREISG 345
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P DF
Sbjct: 346 RLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPN 287
++S EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPG 396
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
ME L N +N P R + +T AE+ ++ + + ++ D +S +AEALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEY--FRDMGYDVALMADSTSRWAEALREISG 345
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P DF
Sbjct: 346 RLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPN 287
++S EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPG 396
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
ME L N +N P R + +T AE+ ++ + + ++ D +S +AEALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEY--FRDMGYDVALMADSTSRWAEALREISG 345
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P DF
Sbjct: 346 RLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPN 287
++S EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPG 396
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
ME L N +N P R + +T AE+ ++ + + ++ D +S +AEALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEY--FRDMGYDVALMADSTSRWAEALREISG 345
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P DF
Sbjct: 346 RLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPN 287
++S EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPG 396
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 21/154 (13%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
ME L N +N P R + +T AE+ ++ + + ++ D +S +AEALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEY--FRDMGYDVALMADSTSRWAEALREISG 345
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF------ 237
EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P DF
Sbjct: 346 RLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQ 405
Query: 238 ------KVSAARE-EVPGRRGFPGYMYTNLATIY 264
KV A + ++ RR FP + ++Y
Sbjct: 406 NTLRVVKVFWALDADLARRRHFPAINWLTSYSLY 439
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPN 287
++S EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPG 396
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
ME L N +N P R + +T AE+ ++ + + ++ D +S +AEALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEY--FRDMGYDVALMADSTSRWAEALREISG 345
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P DF
Sbjct: 346 RLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPN 287
++S EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPG 396
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
ME L N +N P R + +T AE+ ++ + + ++ D +S +AEALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEY--FRDMGYDVALMADSTSRWAEALREISG 345
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P DF
Sbjct: 346 RLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPN 287
++S EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPG 396
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 27/203 (13%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G +A+D M I RGQ+ I RQ G + ++++ + +
Sbjct: 148 TGYKAVDSMIPIGRGQRELIIGD-------------RQTGKTALAIDAIINQRDSGIKCI 194
Query: 107 FAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 166
+ A+G T + EE+G++ N + + A++ + + P E+ + E
Sbjct: 195 YVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGE 254
Query: 167 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGR---------- 216
L+I D+S A A R++S PGR FPG ++ + + ERA R
Sbjct: 255 D-ALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFT 313
Query: 217 ---VEGRNGSITQIPILTMPNDD 236
V+G+ GS+T +PI+ D
Sbjct: 314 KGEVKGKTGSLTALPIIETQAGD 336
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
ME L N +N P R + +T AE+ ++ + + I+ D +S +AEALRE+S
Sbjct: 293 MERTVLIANTSNMPVAAREASIYTGITIAEY--FRDMGYDVAIMADSTSRWAEALREMSG 350
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE+PG G+P Y+ + LA YER+GRV + R GSIT I ++ D
Sbjct: 351 RLEEMPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDI 404
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 17/193 (8%)
Query: 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAI 105
+G +AID I RGQ+ I RQ G + ++++
Sbjct: 160 QTGIKAIDSXIPIGRGQRELIIGD-------------RQTGKTAIAIDTIINQKGQGVYC 206
Query: 106 VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQC 165
++ A+G + G+ E + + A+DP + I P E+ AY
Sbjct: 207 IYVAIGQKKSAIARIIDKLRQYGAXEYTTVVVASASDPASLQYIAPYAGCAXGEYFAYSG 266
Query: 166 EKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGR--NGS 223
+ LV+ D+S +A A R++S PGR +PG ++ + + ERA R+ + GS
Sbjct: 267 -RDALVVYDDLSKHAVAYRQLSLLXRRPPGREAYPGDIFYLHSRLLERAVRLNDKLGGGS 325
Query: 224 ITQIPIL-TMPND 235
+T +PI+ T ND
Sbjct: 326 LTALPIVETQAND 338
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAI 105
+G +AID M I RGQ+ I RQ G + ++++ +
Sbjct: 147 QTGIKAIDSMIPIGRGQRELIIGD-------------RQTGKTTIAIDTIINQKGQDVIC 193
Query: 106 VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQC 165
++ A+G T + ++ +++ + A++P + P E+ Y+
Sbjct: 194 IYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKG 253
Query: 166 EKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRV--EGRNGS 223
KH LV+ D+S A A RE+S PGR +PG ++ + + ERA ++ E GS
Sbjct: 254 -KHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEKGGGS 312
Query: 224 ITQIPIL 230
+T +P +
Sbjct: 313 LTALPFI 319
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 19/189 (10%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVF 107
G RAID + + GQ+I IF+ +G+ + + IC A S D IV
Sbjct: 58 GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA-------------SAD--IIVL 102
Query: 108 AAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 167
A +G F ++ ++ L + ++ P +ER+ A T AE+ Q K
Sbjct: 103 ALIGERGREVNEFLALLPQS-TLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQG-K 160
Query: 168 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQI 227
+VL+++ ++ YA A R+V A E R GFP ++++L + ERAG GSIT I
Sbjct: 161 NVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAG--PAPKGSITAI 218
Query: 228 PILTMPNDD 236
+ + +D+
Sbjct: 219 YTVLLESDN 227
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 16/194 (8%)
Query: 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAI 105
+G +AID + I RGQ+ I RQ G + ++++ + N
Sbjct: 147 QTGIKAIDALVPIGRGQRELIIGD-------------RQTGKTSVAIDTIINQKDQNMIC 193
Query: 106 VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQC 165
++ A+G T + ++G+ + + A+ P + P + E+
Sbjct: 194 IYVAIGQKESTVATVVETLAKHGAPDYTIVVTASASQPAPLLFLAPYAGVAMGEYFMIMG 253
Query: 166 EKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRN--GS 223
KHVLV++ D+S A A R++S PGR +PG ++ + + ERA ++ GS
Sbjct: 254 -KHVLVVIDDLSKQAAAYRQLSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSDAKGGGS 312
Query: 224 ITQIPILTMPNDDF 237
+T +P + D
Sbjct: 313 LTALPFVETQAGDI 326
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
M L N +N P R + + +T AE+ ++ + + ++ D +S +AEALRE+S+
Sbjct: 282 MHRTVLIANTSNMPVAAREASIYVGVTIAEY--FRDQGFSVALMADSTSRWAEALREISS 339
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV---EGRNGSITQIPILTMPNDDF 237
EE+P G+P Y+ LA YERAG+V G G++T + ++ P D
Sbjct: 340 RLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDM 391
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV---EGRNGSITQIPILTMPN 287
++S+ EE+P G+P Y+ LA YERAG+V G G++T + ++ P
Sbjct: 336 EISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPG 388
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 131 ENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSAA 189
E L N +N P R + +T AE+ ++ + + I D +S +AEALRE S
Sbjct: 294 ERTVLIANTSNXPVAAREASIYTGITIAEY--FRDXGYDVAIXADSTSRWAEALREXSGR 351
Query: 190 REEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE PG G+P Y+ + LA YER+GRV + R GSIT I ++ D
Sbjct: 352 LEEXPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDI 404
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 240 SAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILT 284
S EE PG G+P Y+ + LA YER+GRV + R GSIT I ++
Sbjct: 349 SGRLEEXPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVS 398
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
M L N +N P R + + +T AE+ ++ + + ++ D +S +AEALRE+S+
Sbjct: 282 MHRTVLIANTSNMPVAAREASIYVGVTIAEY--FRDQGFSVALMADSTSRWAEALREISS 339
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV---EGRNGSITQIPILTMPNDDF 237
EE+P G+P Y+ LA YERAG+V G G++T + ++ P D
Sbjct: 340 RLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDM 391
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV---EGRNGSITQIPILTMPN 287
++S+ EE+P G+P Y+ LA YERAG+V G G++T + ++ P
Sbjct: 336 EISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPG 388
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--------D 98
+G +A+D + I RGQ+ I RQ G + ++L+ D
Sbjct: 150 TGLKAVDALVPIGRGQRELIIG-------------DRQTGKTAVALDTILNQKRWNNGSD 196
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
V+ A+G T Q E++ +M+ + A++ + + P A +
Sbjct: 197 ESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 256
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ KH L++ D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 257 EWF-RDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 315
Query: 219 GR--NGSITQIPILTMPNDD 236
+ +GS+T +P++ D
Sbjct: 316 EKEGSGSLTALPVIETQGGD 335
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--------D 98
+G +A+D + I RGQ+ I RQ G + ++L+ D
Sbjct: 125 TGLKAVDALVPIGRGQRELIIGD-------------RQTGKTAVALDTILNQKRWNNGSD 171
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
V+ A+G T Q E++ +M+ + A++ + + P A +
Sbjct: 172 ESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 231
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ KH L++ D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 232 EWF-RDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 290
Query: 219 GR--NGSITQIPILTMPNDD 236
+ +GS+T +P++ D
Sbjct: 291 EKEGSGSLTALPVIETQGGD 310
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--------D 98
+G +A+D + I RGQ+ I RQ G + ++L+ D
Sbjct: 150 TGLKAVDALVPIGRGQRELIIGD-------------RQTGKTAVALDTILNQKRWNNGSD 196
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
V+ A+G T Q E++ +M+ + A++ + + P A +
Sbjct: 197 ESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 256
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ KH L++ D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 257 EWF-RDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 315
Query: 219 GR--NGSITQIPILTMPNDD 236
+ +GS+T +P++ D
Sbjct: 316 EKEGSGSLTALPVIETQGGD 335
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--------D 98
+G +A+D + I RGQ+ I RQ G + ++L+ D
Sbjct: 150 TGLKAVDALVPIGRGQRELIIG-------------DRQTGKTAVALDTILNQKRWNNGSD 196
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
V+ A+G T Q E++ +M+ + A++ + + P A +
Sbjct: 197 ESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 256
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ KH L++ D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 257 EWF-RDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 315
Query: 219 GR--NGSITQIPILTMPNDD 236
+ +GS+T +P++ D
Sbjct: 316 EKEGSGSLTALPVIETQGGD 335
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--------D 98
+G +A+D + I RGQ+ I RQ G + ++L+ D
Sbjct: 126 TGLKAVDALVPIGRGQRELIIGD-------------RQTGKTAVALDTILNQKRWNNGSD 172
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
V+ A+G T Q E++ +M+ + A++ + + P A +
Sbjct: 173 ESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 232
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ KH L++ D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 233 EWF-RDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 291
Query: 219 GR--NGSITQIPILTMPNDD 236
+ +GS+T +P++ D
Sbjct: 292 EKEGSGSLTALPVIETQGGD 311
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--------D 98
+G +A+D + I RGQ+ I RQ G + ++L+ D
Sbjct: 185 TGLKAVDALVPIGRGQRELIIG-------------DRQTGKTAVALDTILNQKRWNNGSD 231
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
V+ A+G T Q E++ +M+ + A++ + + P A +
Sbjct: 232 ESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 291
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ KH L++ D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 292 EWF-RDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 350
Query: 219 GR--NGSITQIPILTMPNDD 236
+ +GS+T +P++ D
Sbjct: 351 EKEGSGSLTALPVIETQGGD 370
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 14/191 (7%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + ID++ A+G KI +F AG+ + ++ E V
Sbjct: 130 TGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVA------------QEHGGLSV 177
Query: 107 FAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 166
FA +G + +++G + + N+P R+ LT AE+ +
Sbjct: 178 FAGVGERTREGNDLYHEMKDSGVISKTSMVFGQMNEPPGARLRVALTGLTMAEYFRDREG 237
Query: 167 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQ 226
+ VL+ + ++ + +A EVSA +P G+ + T + + ER + GSIT
Sbjct: 238 QDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERI--TSTKKGSITS 295
Query: 227 IPILTMPNDDF 237
I + +P DD+
Sbjct: 296 IQAIYVPADDY 306
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 43/212 (20%)
Query: 38 TPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ-------AGLVKM 90
TP + + D+ G RAI+ + ++ RGQ++ +F+ +G+ + + + R GL+
Sbjct: 135 TPIEHVLDT-GVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193
Query: 91 PGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIIT 150
G+ V D F + +G +V + ++
Sbjct: 194 RGREVKD---------------------FIENILGPDGRARSVVI--------AAPADVS 224
Query: 151 PRLALTTAEFLAYQCE------KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMY 204
P L + A + E +HVL+I+ ++ YA A RE++ A E P +G+P ++
Sbjct: 225 PLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVF 284
Query: 205 TNLATIYERAGRVEGRNGSITQIPILTMPNDD 236
L + ERAG GSIT + DD
Sbjct: 285 AKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 20/197 (10%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + +D++ A+G KI +F AG+ + ++ + ++ V
Sbjct: 139 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA-----------KAHGGYS-V 186
Query: 107 FAAMGVNMETARFFKQDFEENG------SMENVCLFLNLANDPTIERIITPRLALTTAEF 160
FA +G + E+G + V L N+P R LT AE+
Sbjct: 187 FAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEY 246
Query: 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGR 220
Q + VL+ + ++ + +A EVSA +P G+ + T++ T+ ER +
Sbjct: 247 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--K 304
Query: 221 NGSITQIPILTMPNDDF 237
GSIT + + +P DD
Sbjct: 305 KGSITSVQAIXVPADDL 321
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 20/197 (10%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + +D++ A+G KI +F AG+ + ++ + ++ V
Sbjct: 127 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA-----------KAHGGYS-V 174
Query: 107 FAAMGVNMETARFFKQDFEENG------SMENVCLFLNLANDPTIERIITPRLALTTAEF 160
FA +G + E+G + V L N+P R LT AE+
Sbjct: 175 FAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEY 234
Query: 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGR 220
Q + VL+ + ++ + +A EVSA +P G+ + T++ T+ ER +
Sbjct: 235 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--K 292
Query: 221 NGSITQIPILTMPNDDF 237
GSIT + + +P DD
Sbjct: 293 KGSITSVQAIYVPADDL 309
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 20/197 (10%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + +D++ A+G KI +F AG+ + ++ + ++ V
Sbjct: 135 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA-----------KAHGGYS-V 182
Query: 107 FAAMGVNMETARFFKQDFEENG------SMENVCLFLNLANDPTIERIITPRLALTTAEF 160
FA +G + E+G + V L N+P R LT AE+
Sbjct: 183 FAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEY 242
Query: 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGR 220
Q + VL+ + ++ + +A EVSA +P G+ + T++ T+ ER +
Sbjct: 243 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--K 300
Query: 221 NGSITQIPILTMPNDDF 237
GSIT + + +P DD
Sbjct: 301 KGSITSVQAIYVPADDL 317
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 20/197 (10%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + +D++ A+G KI +F AG+ + ++ + ++ V
Sbjct: 185 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA-----------KAHGGYS-V 232
Query: 107 FAAMGVNMETARFFKQDFEENG------SMENVCLFLNLANDPTIERIITPRLALTTAEF 160
FA +G + E+G + V L N+P R LT AE+
Sbjct: 233 FAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEY 292
Query: 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGR 220
Q + VL+ + ++ + +A EVSA +P G+ + T++ T+ ER +
Sbjct: 293 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--K 350
Query: 221 NGSITQIPILTMPNDDF 237
GSIT + + +P DD
Sbjct: 351 KGSITSVQAIYVPADDL 367
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 20/197 (10%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + +D++ A+G KI +F AG+ + ++ + ++ V
Sbjct: 139 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA-----------KAHGGYS-V 186
Query: 107 FAAMGVNMETARFFKQDFEENG------SMENVCLFLNLANDPTIERIITPRLALTTAEF 160
FA +G + E+G + V L N+P R LT AE+
Sbjct: 187 FAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEY 246
Query: 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGR 220
Q + VL+ + ++ + +A EVSA +P G+ + T++ T+ ER +
Sbjct: 247 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--K 304
Query: 221 NGSITQIPILTMPNDDF 237
GSIT + + +P DD
Sbjct: 305 KGSITSVQAIYVPADDL 321
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 20/197 (10%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + +D++ A+G KI +F AG+ + ++ + ++ V
Sbjct: 137 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA-----------KAHGGYS-V 184
Query: 107 FAAMGVNMETARFFKQDFEENG------SMENVCLFLNLANDPTIERIITPRLALTTAEF 160
FA +G + E+G + V L N+P R LT AE+
Sbjct: 185 FAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEY 244
Query: 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGR 220
Q + VL+ + ++ + +A EVSA +P G+ + T++ T+ ER +
Sbjct: 245 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--K 302
Query: 221 NGSITQIPILTMPNDDF 237
GSIT + + +P DD
Sbjct: 303 KGSITSVQAIYVPADDL 319
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 20/197 (10%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + +D++ A+G KI +F AG+ + ++ + ++ V
Sbjct: 139 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA-----------KAHGGYS-V 186
Query: 107 FAAMGVNMETARFFKQDFEENG------SMENVCLFLNLANDPTIERIITPRLALTTAEF 160
FA +G + E+G + V L N+P R LT AE+
Sbjct: 187 FAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEY 246
Query: 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGR 220
Q + VL+ + ++ + +A EVSA +P G+ + T++ T+ ER +
Sbjct: 247 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--K 304
Query: 221 NGSITQIPILTMPNDDF 237
GSIT + + +P DD
Sbjct: 305 KGSITSVQAIYVPADDL 321
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 15/191 (7%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + ID+M A+G K+ +F AG+ ++ R + E + V
Sbjct: 128 TGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAI------------EHSGYSV 175
Query: 107 FAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 166
FA +G F + ++ ++ V L N+P R+ LT AE +
Sbjct: 176 FAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEG- 234
Query: 167 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQ 226
+ VL+ + ++ Y A EVSA +P G+ + + + ER + GSIT
Sbjct: 235 RDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERI--TSTKTGSITS 292
Query: 227 IPILTMPNDDF 237
+ + +P DD
Sbjct: 293 VQAVYVPADDL 303
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 19/196 (9%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + +D++ ARG KI +F AG+ ++ + + F+ V
Sbjct: 131 TGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINN-----------IAKAHGGFS-V 178
Query: 107 FAAMGVNMETARFFKQDFEENGSM-----ENVCLFLNLANDPTIERIITPRLALTTAEFL 161
F +G ++ +E G + V L N+P R LT AE+
Sbjct: 179 FTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYF 238
Query: 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRN 221
+ + VL+ + ++ + +A EVSA +P G+ + T++ + ER +
Sbjct: 239 RDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTT--KK 296
Query: 222 GSITQIPILTMPNDDF 237
GS+T + + +P DD
Sbjct: 297 GSVTSVQAVYVPADDL 312
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 19/196 (9%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + +D++ ARG KI +F AG+ ++ + + F+ V
Sbjct: 142 TGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINN-----------IAKAHGGFS-V 189
Query: 107 FAAMGVNMETARFFKQDFEENGSM-----ENVCLFLNLANDPTIERIITPRLALTTAEFL 161
F +G ++ +E G + V L N+P R LT AE+
Sbjct: 190 FTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYF 249
Query: 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRN 221
+ + VL+ + ++ + +A EVSA +P G+ + T++ + ER +
Sbjct: 250 RDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTT--KK 307
Query: 222 GSITQIPILTMPNDDF 237
GS+T + + +P DD
Sbjct: 308 GSVTSVQAVYVPADDL 323
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 19/196 (9%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + +D++ ARG KI +F AG+ ++ + + F+ V
Sbjct: 136 TGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINN-----------IAKAHGGFS-V 183
Query: 107 FAAMGVNMETARFFKQDFEENGSM-----ENVCLFLNLANDPTIERIITPRLALTTAEFL 161
F +G ++ +E G + V L N+P R LT AE+
Sbjct: 184 FTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYF 243
Query: 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRN 221
+ + VL+ + ++ + +A EVSA +P G+ + T++ + ER +
Sbjct: 244 RDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTT--KK 301
Query: 222 GSITQIPILTMPNDDF 237
GS+T + + +P DD
Sbjct: 302 GSVTSVQAVYVPADDL 317
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 19/196 (9%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + +D++ ARG KI +F AG+ ++ + + F+ V
Sbjct: 131 TGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINN-----------IAKAHGGFS-V 178
Query: 107 FAAMGVNMETARFFKQDFEENGSM-----ENVCLFLNLANDPTIERIITPRLALTTAEFL 161
F +G ++ +E G + V L N+P R LT AE+
Sbjct: 179 FTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYF 238
Query: 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRN 221
+ + VL+ + ++ + +A EVSA +P G+ + T++ + ER +
Sbjct: 239 RDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTT--KK 296
Query: 222 GSITQIPILTMPNDDF 237
GS+T + + +P DD
Sbjct: 297 GSVTSVQAVYVPADDL 312
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 19/196 (9%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + +D++ ARG KI +F AG+ ++ + + F+ V
Sbjct: 142 TGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINN-----------IAKAHGGFS-V 189
Query: 107 FAAMGVNMETARFFKQDFEENGSM-----ENVCLFLNLANDPTIERIITPRLALTTAEFL 161
F +G ++ +E G + V L N+P R LT AE+
Sbjct: 190 FTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYF 249
Query: 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRN 221
+ + VL+ + ++ + +A EVSA +P G+ + T++ + ER +
Sbjct: 250 RDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAFGYQPTLATDMGLLQERITTT--KK 307
Query: 222 GSITQIPILTMPNDDF 237
GS+T + + +P DD
Sbjct: 308 GSVTSVQAVYVPADDL 323
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 22/195 (11%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPH----NEIAAQICRQAGLVKMPGKSVLDDSEDN 102
+G + +D++ +G KI +F AG+ E+ I ++ G +
Sbjct: 137 TGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS------------- 183
Query: 103 FAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLA 162
VFA +G + +++G + + N+P R+ LT AE+
Sbjct: 184 ---VFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFR 240
Query: 163 YQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNG 222
+ + L+ + ++ + +A EVSA +P G+ + T + + ER G
Sbjct: 241 DEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERI--TSTAKG 298
Query: 223 SITQIPILTMPNDDF 237
SIT I + +P DD+
Sbjct: 299 SITSIQAIYVPADDY 313
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 19/196 (9%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + +D++ ARG KI +F AG+ ++ + + F+ V
Sbjct: 169 TGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINN-----------IAKAHGGFS-V 216
Query: 107 FAAMGVNMETARFFKQDFEENGSM-----ENVCLFLNLANDPTIERIITPRLALTTAEFL 161
F +G ++ +E G + V L N+P R LT AE+
Sbjct: 217 FTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYF 276
Query: 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRN 221
+ + VL+ + ++ + +A EVSA +P G+ + T++ + ER +
Sbjct: 277 RDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERI--TTTKK 334
Query: 222 GSITQIPILTMPNDDF 237
GS+T + + +P DD
Sbjct: 335 GSVTSVQAVYVPADDL 350
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 24/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--------D 98
+G +A+D + I RGQ+ I RQ G + ++++ D
Sbjct: 148 TGIKAVDSLVPIGRGQRELIIGD-------------RQTGKTSIAIDTIINQKRFNDGTD 194
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
+ ++ A+G T + + +M+ + A+D + + P +
Sbjct: 195 EKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMG 254
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ KH L+I D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 255 EYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 313
Query: 219 GR--NGSITQIPILTMPNDD 236
GS+T +P++ D
Sbjct: 314 DSFGGGSLTALPVIETQAGD 333
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 247 PGRRGFPGYMYTNLATIYERAGRVEGR--NGSITQIPIL-TMPNDVGASI 293
PGR +PG ++ + + ERA ++ GS+T +P++ T DV A I
Sbjct: 289 PGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVSAYI 338
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 24/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--------D 98
+G +A+D + I RGQ+ I RQ G + ++++ D
Sbjct: 148 TGIKAVDSLVPIGRGQRELIIGD-------------RQTGKTSIAIDTIINQKRFNDGTD 194
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
+ ++ A+G T + + +M+ + A+D + + P +
Sbjct: 195 EKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMG 254
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ KH L+I D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 255 EYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 313
Query: 219 GR--NGSITQIPILTMPNDD 236
GS+T +P++ D
Sbjct: 314 DSFGGGSLTALPVIETQAGD 333
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 247 PGRRGFPGYMYTNLATIYERAGRVEGR--NGSITQIPIL-TMPNDVGASI 293
PGR +PG ++ + + ERA ++ GS+T +P++ T DV A I
Sbjct: 289 PGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVSAYI 338
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 24/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--------D 98
+G +A+D + I RGQ+ I RQ G + ++++ D
Sbjct: 130 TGIKAVDSLVPIGRGQRELIIGD-------------RQTGKTSIAIDTIINQKRFNDGTD 176
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
+ ++ A+G T + + +M+ + A+D + + P +
Sbjct: 177 EKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMG 236
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ KH L+I D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 237 EYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 295
Query: 219 GR--NGSITQIPILTMPNDD 236
GS+T +P++ D
Sbjct: 296 DAFGGGSLTALPVIETQAGD 315
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 247 PGRRGFPGYMYTNLATIYERAGRVEGR--NGSITQIPIL-TMPNDVGASI 293
PGR +PG ++ + + ERA ++ GS+T +P++ T DV A I
Sbjct: 271 PGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYI 320
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 24/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--------D 98
+G +A+D + I RGQ+ I RQ G + ++++ D
Sbjct: 125 TGIKAVDSLVPIGRGQRELIIGD-------------RQTGKTSIAIDTIINQKRFNDGTD 171
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
+ ++ A+G T + + +M+ + A+D + + P +
Sbjct: 172 EKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMG 231
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ KH L+I D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 232 EYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 290
Query: 219 GR--NGSITQIPILTMPNDD 236
GS+T +P++ D
Sbjct: 291 DAFGGGSLTALPVIETQAGD 310
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 247 PGRRGFPGYMYTNLATIYERAGRVEGR--NGSITQIPIL-TMPNDVGASI 293
PGR +PG ++ + + ERA ++ GS+T +P++ T DV A I
Sbjct: 266 PGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYI 315
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 24/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--------D 98
+G +A+D + I RGQ+ I RQ G + ++++ D
Sbjct: 148 TGIKAVDSLVPIGRGQRELIIGD-------------RQTGKTSIAIDTIINQKRFNDGTD 194
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
+ ++ A+G T + + +M+ + A+D + + P +
Sbjct: 195 EKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMG 254
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ KH L+I D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 255 EYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 313
Query: 219 GR--NGSITQIPILTMPNDD 236
GS+T +P++ D
Sbjct: 314 DAFGGGSLTALPVIETQAGD 333
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 247 PGRRGFPGYMYTNLATIYERAGRVEGR--NGSITQIPIL-TMPNDVGASI 293
PGR +PG ++ + + ERA ++ GS+T +P++ T DV A I
Sbjct: 289 PGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYI 338
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 24/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--------D 98
+G +A+D + I RGQ+ I RQ G + ++++ D
Sbjct: 148 TGIKAVDSLVPIGRGQRELIIGD-------------RQTGKTSIAIDTIINQKRFNDGTD 194
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
+ ++ A+G T + + +M+ + A+D + + P +
Sbjct: 195 EKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMG 254
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ KH L+I D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 255 EYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 313
Query: 219 GR--NGSITQIPILTMPNDD 236
GS+T +P++ D
Sbjct: 314 DAFGGGSLTALPVIETQAGD 333
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 247 PGRRGFPGYMYTNLATIYERAGRVEGR--NGSITQIPIL-TMPNDVGASI 293
PGR +PG ++ + + ERA ++ GS+T +P++ T DV A I
Sbjct: 289 PGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYI 338
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 24/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--------D 98
+G +A+D + I RGQ+ I RQ G + ++++ D
Sbjct: 148 TGIKAVDSLVPIGRGQRELIIGD-------------RQTGKTSIAIDTIINQKRFNDGTD 194
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
+ ++ A+G T + + +M+ + A+D + + P +
Sbjct: 195 EKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMG 254
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ KH L+I D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 255 EYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 313
Query: 219 GR--NGSITQIPILTMPNDD 236
GS+T +P++ D
Sbjct: 314 DAFGGGSLTALPVIETQAGD 333
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 247 PGRRGFPGYMYTNLATIYERAGRVEGR--NGSITQIPIL-TMPNDVGASI 293
PGR +PG ++ + + ERA ++ GS+T +P++ T DV A I
Sbjct: 289 PGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYI 338
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 24/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--------D 98
+G +A+D + I RGQ+ I RQ G + ++++ D
Sbjct: 191 TGIKAVDSLVPIGRGQRELIIGD-------------RQTGKTSIAIDTIINQKRFNDGTD 237
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
+ ++ A+G T + + +M+ + A+D + + P +
Sbjct: 238 EKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMG 297
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ KH L+I D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 298 EYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 356
Query: 219 GR--NGSITQIPILTMPNDD 236
GS+T +P++ D
Sbjct: 357 DAFGGGSLTALPVIETQAGD 376
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 247 PGRRGFPGYMYTNLATIYERAGRVEGR--NGSITQIPIL-TMPNDVGASI 293
PGR +PG ++ + + ERA ++ GS+T +P++ T DV A I
Sbjct: 332 PGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYI 381
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 125 EENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALR 184
E+N + V L N+P R+ ALT AE+ E+ VL+ + ++ + +A
Sbjct: 224 EQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGS 283
Query: 185 EVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDF 237
EVSA +P G+ + T + ++ ER + GSIT I + +P DD
Sbjct: 284 EVSALLGRMPSAVGYQPTLSTEMGSLQERI--TSTKEGSITSIQAVYVPADDL 334
>pdb|1BYO|A Chain A, Wild-Type Plastocyanin From Silene
pdb|1BYO|B Chain B, Wild-Type Plastocyanin From Silene
Length = 99
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 22/95 (23%)
Query: 30 SQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGL-- 87
S +G +F P DL SIA G+KI + AG PHN++ + AG+
Sbjct: 7 SSDGGLAFVPSDL--------------SIASGEKITFKNNAGFPHNDLFDEDEVPAGVDV 52
Query: 88 --VKMPGKSVLDDSEDNFAIVFAAMGVNMETARFF 120
+ MP + +L+ + +++ G T +F+
Sbjct: 53 TKISMPEEDLLNAPGEEYSVTLTEKG----TYKFY 83
>pdb|1BYP|A Chain A, E43k,D44k Double Mutant Plastocyanin From Silene
Length = 99
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 22/95 (23%)
Query: 30 SQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGL-- 87
S +G +F P DL SIA G+KI + AG PHN++ + AG+
Sbjct: 7 SSDGGLAFVPSDL--------------SIASGEKITFKNNAGFPHNDLFDKKEVPAGVDV 52
Query: 88 --VKMPGKSVLDDSEDNFAIVFAAMGVNMETARFF 120
+ MP + +L+ + +++ G T +F+
Sbjct: 53 TKISMPEEDLLNAPGEEYSVTLTEKG----TYKFY 83
>pdb|1BCC|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 196
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 233 PNDDFKVSAAREEVPGRRGFPGYMYTNLATI 263
P DD+ ++RE P R+GF Y+ T + T+
Sbjct: 16 PPDDYSTKSSRESDPSRKGF-SYLVTAVTTL 45
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154)
From Thermotoga Maritima At 1.70a Resolution
Length = 232
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 101 DNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160
D F + MG + A F E G+ +N+ F + + DP + R+ AL T+ +
Sbjct: 136 DQFDLAILGMGPDGHVASIFDL---ETGNKDNLVTFTDPSGDPKVPRVTLTFRALNTSLY 192
Query: 161 LAY 163
+ +
Sbjct: 193 VLF 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,596,885
Number of Sequences: 62578
Number of extensions: 350754
Number of successful extensions: 809
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 123
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)